Query 005142
Match_columns 712
No_of_seqs 467 out of 3254
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 18:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 3E-109 6E-114 955.8 58.5 585 46-665 20-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-103 2E-108 916.7 62.2 566 67-663 36-615 (617)
3 PLN03211 ABC transporter G-25; 100.0 6E-103 1E-107 911.5 65.7 576 46-660 34-657 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 1E-101 3E-106 961.5 66.1 591 48-663 26-696 (1394)
5 PLN03140 ABC transporter G fam 100.0 2E-100 3E-105 948.9 63.7 580 49-664 865-1469(1470)
6 PLN03140 ABC transporter G fam 100.0 3.1E-99 7E-104 937.4 61.2 592 47-661 127-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 6.7E-98 1E-102 928.3 62.0 576 49-663 757-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1.3E-96 3E-101 863.2 40.4 577 51-665 787-1387(1391)
9 KOG0065 Pleiotropic drug resis 100.0 3.8E-91 8.3E-96 817.1 43.0 574 69-665 128-734 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.2E-51 2.7E-56 404.3 23.0 216 51-282 2-223 (240)
11 COG1135 AbcC ABC-type metal io 100.0 3E-48 6.4E-53 398.3 23.6 220 52-283 2-230 (339)
12 COG1125 OpuBA ABC-type proline 100.0 3.6E-48 7.8E-53 386.8 22.8 216 52-284 2-225 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-47 2.5E-52 381.8 24.3 220 49-284 6-235 (263)
14 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-47 2.3E-52 387.2 23.5 204 51-271 3-207 (248)
15 COG1131 CcmA ABC-type multidru 100.0 2.7E-47 5.8E-52 404.8 27.6 221 51-288 4-230 (293)
16 COG1136 SalX ABC-type antimicr 100.0 2.9E-47 6.2E-52 383.6 25.5 209 52-273 2-220 (226)
17 COG1120 FepC ABC-type cobalami 100.0 1.3E-47 2.8E-52 393.3 23.0 219 51-283 2-227 (258)
18 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.7E-47 2.1E-51 385.0 24.9 219 50-284 3-227 (254)
19 COG3839 MalK ABC-type sugar tr 100.0 1.5E-46 3.4E-51 399.1 24.9 217 51-284 3-223 (338)
20 COG3842 PotA ABC-type spermidi 100.0 1.1E-46 2.3E-51 402.3 22.4 217 50-282 4-224 (352)
21 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-46 3.4E-51 384.7 20.8 220 50-284 1-227 (345)
22 COG3638 ABC-type phosphate/pho 100.0 5.5E-46 1.2E-50 368.9 21.0 222 50-284 2-237 (258)
23 COG4555 NatA ABC-type Na+ tran 100.0 4.2E-46 9.2E-51 360.5 19.4 217 52-284 2-222 (245)
24 PRK13537 nodulation ABC transp 100.0 1.7E-44 3.8E-49 386.1 29.1 217 51-284 7-227 (306)
25 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-44 3.4E-49 392.9 29.1 217 51-284 4-224 (353)
26 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-44 4.7E-49 389.6 29.3 219 52-283 2-229 (343)
27 COG1117 PstB ABC-type phosphat 100.0 2.7E-45 5.9E-50 358.1 19.9 221 50-283 6-236 (253)
28 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-44 4.2E-49 392.6 29.0 217 51-283 3-223 (356)
29 COG2884 FtsE Predicted ATPase 100.0 3.6E-45 7.9E-50 351.3 20.3 211 52-278 2-220 (223)
30 PRK11432 fbpC ferric transport 100.0 2.7E-44 5.9E-49 390.5 29.2 216 51-283 6-225 (351)
31 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-44 5.9E-49 370.6 27.3 215 52-282 1-224 (235)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 5.5E-44 1.2E-48 389.3 29.3 216 51-283 5-227 (362)
33 PRK10851 sulfate/thiosulfate t 100.0 5.8E-44 1.3E-48 388.4 28.9 219 51-283 2-225 (353)
34 PRK13536 nodulation factor exp 100.0 8.8E-44 1.9E-48 385.2 30.1 219 49-284 39-261 (340)
35 COG1124 DppF ABC-type dipeptid 100.0 2.4E-44 5.2E-49 359.7 23.1 221 50-284 2-231 (252)
36 PRK09452 potA putrescine/sperm 100.0 8.6E-44 1.9E-48 389.3 29.5 218 49-283 12-233 (375)
37 KOG0058 Peptide exporter, ABC 100.0 1E-44 2.3E-49 407.1 20.9 250 1-284 432-691 (716)
38 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-43 2.7E-48 362.1 26.4 213 52-281 1-218 (220)
39 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.9E-43 4E-48 360.8 27.3 216 52-280 1-219 (220)
40 COG1122 CbiO ABC-type cobalt t 100.0 7.1E-44 1.5E-48 364.9 24.1 218 51-284 3-228 (235)
41 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-43 2.8E-48 360.1 25.8 209 52-277 1-213 (213)
42 PRK11607 potG putrescine trans 100.0 2.6E-43 5.6E-48 386.1 30.0 217 50-283 18-238 (377)
43 TIGR01288 nodI ATP-binding ABC 100.0 2.5E-43 5.3E-48 377.1 29.2 218 50-284 3-224 (303)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1.8E-43 3.9E-48 364.5 26.8 217 52-282 1-230 (236)
45 cd03296 ABC_CysA_sulfate_impor 100.0 2.9E-43 6.2E-48 364.0 28.0 218 51-282 2-224 (239)
46 PRK11000 maltose/maltodextrin 100.0 2.8E-43 6.1E-48 385.7 29.2 216 51-283 3-222 (369)
47 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-43 5.6E-48 362.3 26.7 214 52-282 1-220 (232)
48 TIGR00960 3a0501s02 Type II (G 100.0 1.8E-43 4E-48 359.7 25.1 207 52-273 2-216 (216)
49 cd03258 ABC_MetN_methionine_tr 100.0 4E-43 8.7E-48 361.3 26.8 218 52-282 2-228 (233)
50 PRK13643 cbiO cobalt transport 100.0 5.3E-43 1.2E-47 371.9 28.3 232 52-296 2-248 (288)
51 PRK11153 metN DL-methionine tr 100.0 5.9E-43 1.3E-47 379.9 29.2 219 52-283 2-229 (343)
52 cd03301 ABC_MalK_N The N-termi 100.0 5.1E-43 1.1E-47 355.5 26.4 209 52-277 1-213 (213)
53 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-43 2.8E-48 338.0 20.0 213 52-283 2-218 (231)
54 cd03269 ABC_putative_ATPase Th 100.0 5.3E-43 1.1E-47 354.8 25.2 209 52-277 1-210 (210)
55 PRK13637 cbiO cobalt transport 100.0 1.5E-42 3.2E-47 368.3 29.8 221 51-283 2-233 (287)
56 cd03256 ABC_PhnC_transporter A 100.0 6.8E-43 1.5E-47 361.2 26.4 218 52-282 1-232 (241)
57 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-42 2.3E-47 371.8 28.7 216 51-284 2-221 (301)
58 cd03224 ABC_TM1139_LivF_branch 100.0 6.7E-43 1.4E-47 356.8 25.3 212 52-282 1-219 (222)
59 cd03263 ABC_subfamily_A The AB 100.0 8.6E-43 1.9E-47 355.6 26.0 215 52-282 1-219 (220)
60 cd03260 ABC_PstB_phosphate_tra 100.0 5.5E-43 1.2E-47 358.9 24.5 214 52-281 1-226 (227)
61 COG4988 CydD ABC-type transpor 100.0 7E-43 1.5E-47 385.9 26.8 248 1-284 285-543 (559)
62 TIGR01188 drrA daunorubicin re 100.0 7.9E-43 1.7E-47 373.0 26.4 205 68-284 5-213 (302)
63 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-42 4.2E-47 357.9 28.1 215 52-282 2-223 (240)
64 PRK11264 putative amino-acid A 100.0 1.9E-42 4E-47 360.1 27.9 216 51-282 3-231 (250)
65 cd03266 ABC_NatA_sodium_export 100.0 1.2E-42 2.6E-47 354.1 25.9 213 52-277 2-218 (218)
66 PRK13634 cbiO cobalt transport 100.0 2.4E-42 5.1E-47 367.2 29.2 220 51-283 2-234 (290)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.7E-43 1.7E-47 355.5 24.3 208 52-273 1-218 (218)
68 PRK15079 oligopeptide ABC tran 100.0 2.6E-42 5.7E-47 372.5 29.4 225 49-283 6-250 (331)
69 PRK13651 cobalt transporter AT 100.0 2.3E-42 5.1E-47 369.3 28.7 221 51-283 2-253 (305)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-42 4.1E-47 358.5 27.2 215 52-282 1-223 (242)
71 PRK13631 cbiO cobalt transport 100.0 4.3E-42 9.3E-47 369.5 30.8 232 50-294 20-278 (320)
72 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-42 2.3E-47 360.2 24.6 218 52-282 2-233 (243)
73 PRK13647 cbiO cobalt transport 100.0 4.2E-42 9.2E-47 362.5 29.5 216 51-282 4-225 (274)
74 COG0444 DppD ABC-type dipeptid 100.0 1.3E-42 2.9E-47 361.4 25.2 227 52-283 2-242 (316)
75 PRK09536 btuD corrinoid ABC tr 100.0 2.2E-42 4.8E-47 380.4 28.1 219 51-283 3-227 (402)
76 PRK11831 putative ABC transpor 100.0 4.1E-42 8.8E-47 361.7 28.7 216 51-282 7-231 (269)
77 COG2274 SunT ABC-type bacterio 100.0 4.9E-43 1.1E-47 407.1 23.6 249 2-284 438-696 (709)
78 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-42 3.4E-47 350.8 24.0 205 52-277 1-208 (208)
79 TIGR01186 proV glycine betaine 100.0 2.7E-42 5.8E-47 375.4 27.5 205 67-283 4-218 (363)
80 PRK10895 lipopolysaccharide AB 100.0 3E-42 6.5E-47 356.7 26.5 216 51-282 3-224 (241)
81 PRK11248 tauB taurine transpor 100.0 5.3E-42 1.2E-46 358.0 28.3 212 52-280 2-216 (255)
82 PRK13646 cbiO cobalt transport 100.0 4.1E-42 8.9E-47 364.7 27.7 220 51-283 2-234 (286)
83 PRK11629 lolD lipoprotein tran 100.0 6.9E-42 1.5E-46 352.3 28.4 215 51-279 5-229 (233)
84 TIGR02673 FtsE cell division A 100.0 3.4E-42 7.4E-47 349.7 25.3 205 52-272 2-214 (214)
85 cd03292 ABC_FtsE_transporter F 100.0 3.2E-42 7E-47 349.8 25.1 206 52-273 1-214 (214)
86 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9E-42 2E-46 352.1 28.7 214 52-283 2-220 (236)
87 PRK11124 artP arginine transpo 100.0 5.4E-42 1.2E-46 355.0 27.1 214 51-281 2-227 (242)
88 cd03264 ABC_drug_resistance_li 100.0 3.3E-42 7.2E-47 349.2 24.7 207 52-277 1-211 (211)
89 PRK10619 histidine/lysine/argi 100.0 7.8E-42 1.7E-46 357.1 28.2 216 51-282 5-239 (257)
90 TIGR00972 3a0107s01c2 phosphat 100.0 9.3E-42 2E-46 354.4 28.4 216 52-282 2-230 (247)
91 PRK11614 livF leucine/isoleuci 100.0 4.4E-42 9.5E-47 354.6 25.8 214 51-283 5-225 (237)
92 PRK13650 cbiO cobalt transport 100.0 8.7E-42 1.9E-46 361.0 28.6 218 51-283 4-228 (279)
93 PRK11174 cysteine/glutathione 100.0 2.4E-42 5.3E-47 401.3 26.8 247 2-284 316-572 (588)
94 COG1137 YhbG ABC-type (unclass 100.0 1.7E-43 3.6E-48 342.1 13.8 219 51-284 4-228 (243)
95 COG0411 LivG ABC-type branched 100.0 1.2E-42 2.5E-47 347.9 20.2 220 51-284 4-239 (250)
96 PRK11247 ssuB aliphatic sulfon 100.0 5.7E-42 1.2E-46 358.0 26.2 207 51-280 12-219 (257)
97 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4E-42 8.6E-47 361.8 25.1 214 53-283 26-249 (269)
98 cd03234 ABCG_White The White s 100.0 8.4E-42 1.8E-46 350.1 26.6 220 52-277 4-226 (226)
99 PRK11300 livG leucine/isoleuci 100.0 1.1E-41 2.3E-46 355.5 27.4 218 51-282 5-241 (255)
100 PRK13649 cbiO cobalt transport 100.0 1.8E-41 3.9E-46 358.8 29.4 220 51-283 2-233 (280)
101 cd03226 ABC_cobalt_CbiO_domain 100.0 3.7E-42 8.1E-47 347.4 22.9 201 54-274 2-205 (205)
102 PRK09473 oppD oligopeptide tra 100.0 2.2E-41 4.8E-46 365.4 30.4 228 50-283 11-250 (330)
103 KOG0055 Multidrug/pheromone ex 100.0 7.6E-41 1.6E-45 394.7 37.5 251 2-284 316-576 (1228)
104 TIGR03005 ectoine_ehuA ectoine 100.0 1.3E-41 2.8E-46 354.3 27.6 215 52-282 1-234 (252)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 5.8E-42 1.3E-46 347.6 24.2 206 52-273 1-213 (213)
106 PRK13641 cbiO cobalt transport 100.0 1.6E-41 3.5E-46 360.4 28.5 220 51-283 2-233 (287)
107 PRK11308 dppF dipeptide transp 100.0 1.9E-41 4.2E-46 365.4 29.4 222 51-283 5-243 (327)
108 PRK10908 cell division protein 100.0 1.3E-41 2.8E-46 347.7 26.6 207 52-274 2-216 (222)
109 PRK10070 glycine betaine trans 100.0 1.8E-41 3.9E-46 373.0 29.0 202 70-283 42-253 (400)
110 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-41 3.2E-46 346.7 26.3 209 52-274 2-220 (221)
111 TIGR01978 sufC FeS assembly AT 100.0 1.8E-41 3.8E-46 351.0 27.2 219 52-283 1-233 (243)
112 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-41 3.8E-46 351.1 27.1 216 52-282 3-229 (242)
113 PRK13638 cbiO cobalt transport 100.0 2.1E-41 4.5E-46 356.7 27.8 215 52-283 2-224 (271)
114 PRK11231 fecE iron-dicitrate t 100.0 1.5E-41 3.3E-46 354.5 26.4 218 51-282 2-225 (255)
115 PRK14267 phosphate ABC transpo 100.0 2.8E-41 6.2E-46 351.9 28.2 224 51-283 4-236 (253)
116 PRK13636 cbiO cobalt transport 100.0 2.9E-41 6.2E-46 357.8 28.6 228 51-294 5-244 (283)
117 PRK13635 cbiO cobalt transport 100.0 3.5E-41 7.6E-46 356.3 29.1 217 51-283 5-228 (279)
118 cd03257 ABC_NikE_OppD_transpor 100.0 2E-41 4.3E-46 347.2 26.4 214 52-277 2-228 (228)
119 PRK13548 hmuV hemin importer A 100.0 2.6E-41 5.5E-46 353.5 27.7 216 51-283 2-229 (258)
120 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-41 2.4E-46 345.3 24.2 204 54-272 2-211 (211)
121 PRK11022 dppD dipeptide transp 100.0 3.1E-41 6.6E-46 363.9 29.1 227 51-283 3-242 (326)
122 PRK14268 phosphate ABC transpo 100.0 3E-41 6.5E-46 352.9 27.8 216 51-282 12-240 (258)
123 cd03235 ABC_Metallic_Cations A 100.0 6.3E-42 1.4E-46 347.7 22.0 209 54-277 2-213 (213)
124 PRK14247 phosphate ABC transpo 100.0 4.9E-41 1.1E-45 349.5 28.9 224 51-283 3-233 (250)
125 PRK13644 cbiO cobalt transport 100.0 1.8E-41 3.9E-46 357.7 25.9 215 52-283 2-223 (274)
126 PRK10575 iron-hydroxamate tran 100.0 2.9E-41 6.2E-46 354.5 27.2 220 49-282 9-235 (265)
127 COG0410 LivF ABC-type branched 100.0 1.3E-41 2.8E-46 338.0 23.0 216 51-284 3-226 (237)
128 TIGR03410 urea_trans_UrtE urea 100.0 1.6E-41 3.4E-46 348.8 24.5 211 52-282 1-219 (230)
129 PRK14273 phosphate ABC transpo 100.0 3.7E-41 8.1E-46 351.3 27.6 218 51-283 7-237 (254)
130 PRK09984 phosphonate/organopho 100.0 2.9E-41 6.3E-46 353.8 26.9 220 51-281 4-239 (262)
131 PRK13639 cbiO cobalt transport 100.0 8.6E-41 1.9E-45 352.7 29.9 216 52-283 2-225 (275)
132 PRK14242 phosphate transporter 100.0 5.8E-41 1.3E-45 349.6 28.3 221 51-282 6-235 (253)
133 TIGR02769 nickel_nikE nickel i 100.0 4.5E-41 9.8E-46 353.0 27.5 222 51-283 2-239 (265)
134 TIGR03740 galliderm_ABC gallid 100.0 3.5E-41 7.6E-46 344.7 26.0 208 52-280 1-209 (223)
135 COG4152 ABC-type uncharacteriz 100.0 4.6E-42 1E-46 341.0 18.8 220 51-287 2-222 (300)
136 cd03298 ABC_ThiQ_thiamine_tran 100.0 3E-41 6.5E-46 342.2 25.0 207 52-277 1-211 (211)
137 PRK10253 iron-enterobactin tra 100.0 4.7E-41 1E-45 352.8 27.3 221 49-283 5-232 (265)
138 COG1132 MdlB ABC-type multidru 100.0 1.1E-41 2.4E-46 394.1 24.8 246 2-284 297-552 (567)
139 COG1123 ATPase components of v 100.0 2.9E-41 6.2E-46 374.6 26.9 227 51-284 5-244 (539)
140 TIGR03873 F420-0_ABC_ATP propo 100.0 4.4E-41 9.6E-46 351.2 26.7 217 52-282 2-224 (256)
141 PRK13652 cbiO cobalt transport 100.0 5.5E-41 1.2E-45 354.5 27.6 217 51-283 3-226 (277)
142 TIGR03415 ABC_choXWV_ATP choli 100.0 5.7E-41 1.2E-45 366.7 28.1 204 68-283 36-253 (382)
143 cd03300 ABC_PotA_N PotA is an 100.0 8E-41 1.7E-45 344.3 27.5 214 52-282 1-218 (232)
144 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-41 5.4E-46 399.4 27.0 242 2-284 420-673 (686)
145 PRK10584 putative ABC transpor 100.0 8.1E-41 1.8E-45 343.0 27.3 211 51-275 6-226 (228)
146 PRK14256 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 347.2 28.8 222 51-282 4-234 (252)
147 PRK13648 cbiO cobalt transport 100.0 1.4E-40 3E-45 350.1 29.5 228 51-294 7-244 (269)
148 PRK14269 phosphate ABC transpo 100.0 9.8E-41 2.1E-45 346.6 27.9 222 51-282 2-228 (246)
149 PRK10744 pstB phosphate transp 100.0 1.2E-40 2.5E-45 348.9 28.4 224 49-283 11-243 (260)
150 PRK14235 phosphate transporter 100.0 9.8E-41 2.1E-45 350.8 28.0 222 51-282 19-249 (267)
151 PRK14245 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 346.4 28.7 222 50-283 2-233 (250)
152 TIGR00968 3a0106s01 sulfate AB 100.0 9E-41 1.9E-45 345.1 27.0 215 52-283 1-219 (237)
153 PRK14237 phosphate transporter 100.0 1.7E-40 3.6E-45 349.1 29.4 223 49-282 18-249 (267)
154 PRK13640 cbiO cobalt transport 100.0 1.4E-40 3.1E-45 352.3 29.0 220 51-283 5-231 (282)
155 COG4175 ProV ABC-type proline/ 100.0 1.2E-41 2.6E-46 349.0 19.9 223 50-284 3-254 (386)
156 PRK10771 thiQ thiamine transpo 100.0 8.9E-41 1.9E-45 343.8 26.6 213 52-283 2-218 (232)
157 PRK14274 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 348.4 28.1 221 51-282 12-241 (259)
158 PRK13645 cbiO cobalt transport 100.0 8.6E-41 1.9E-45 355.2 27.2 220 51-283 6-239 (289)
159 PRK14250 phosphate ABC transpo 100.0 7.8E-41 1.7E-45 346.4 26.1 210 51-282 3-219 (241)
160 PRK13632 cbiO cobalt transport 100.0 8.1E-41 1.8E-45 352.2 26.7 218 50-283 6-230 (271)
161 TIGR01257 rim_protein retinal- 100.0 7.2E-39 1.6E-43 401.0 48.7 222 49-286 926-1151(2272)
162 PRK15093 antimicrobial peptide 100.0 1.6E-40 3.4E-45 359.2 29.4 229 51-283 3-247 (330)
163 PRK13633 cobalt transporter AT 100.0 1.2E-40 2.6E-45 352.5 27.7 219 51-283 4-232 (280)
164 TIGR02142 modC_ABC molybdenum 100.0 9.3E-41 2E-45 364.3 27.2 207 56-283 4-220 (354)
165 PRK14241 phosphate transporter 100.0 1.7E-40 3.6E-45 347.3 27.8 219 51-283 4-241 (258)
166 PRK11176 lipid transporter ATP 100.0 7.9E-41 1.7E-45 388.2 27.9 245 2-283 310-566 (582)
167 cd03299 ABC_ModC_like Archeal 100.0 1.8E-40 3.9E-45 342.3 27.5 213 52-282 1-217 (235)
168 PRK11144 modC molybdate transp 100.0 9.8E-41 2.1E-45 363.7 26.8 206 52-283 2-217 (352)
169 COG4525 TauB ABC-type taurine 100.0 7.9E-41 1.7E-45 322.0 22.7 220 51-285 3-225 (259)
170 PRK15112 antimicrobial peptide 100.0 1.5E-40 3.3E-45 349.4 26.7 222 51-283 4-238 (267)
171 PRK14239 phosphate transporter 100.0 2.6E-40 5.6E-45 344.4 28.1 221 51-282 5-234 (252)
172 PRK11160 cysteine/glutathione 100.0 1E-40 2.2E-45 386.3 27.6 246 2-284 306-562 (574)
173 PRK14244 phosphate ABC transpo 100.0 2.2E-40 4.8E-45 344.9 27.4 222 51-282 5-235 (251)
174 TIGR01277 thiQ thiamine ABC tr 100.0 1.9E-40 4.1E-45 337.1 26.1 208 52-278 1-212 (213)
175 TIGR01184 ntrCD nitrate transp 100.0 8.4E-41 1.8E-45 343.8 23.8 199 72-280 1-200 (230)
176 PRK14270 phosphate ABC transpo 100.0 2.7E-40 5.8E-45 344.3 27.8 223 50-283 3-234 (251)
177 PRK14262 phosphate ABC transpo 100.0 2.8E-40 6E-45 343.9 27.8 222 51-283 3-233 (250)
178 PRK14240 phosphate transporter 100.0 3.7E-40 8.1E-45 342.9 28.5 221 51-282 3-232 (250)
179 PRK10790 putative multidrug tr 100.0 2.2E-40 4.8E-45 385.2 29.6 241 2-283 310-562 (592)
180 PRK13549 xylose transporter AT 100.0 1.7E-40 3.6E-45 379.2 27.8 220 51-282 5-230 (506)
181 PRK14248 phosphate ABC transpo 100.0 4.6E-40 1E-44 345.9 28.6 223 49-282 19-250 (268)
182 cd03233 ABC_PDR_domain1 The pl 100.0 2E-40 4.4E-45 334.3 24.8 195 51-277 3-202 (202)
183 PRK14272 phosphate ABC transpo 100.0 5.3E-40 1.1E-44 342.1 28.7 220 50-283 3-235 (252)
184 PRK11701 phnK phosphonate C-P 100.0 4E-40 8.6E-45 344.4 27.6 216 51-282 6-239 (258)
185 PRK13547 hmuV hemin importer A 100.0 3E-40 6.5E-45 347.8 26.4 220 52-282 2-242 (272)
186 TIGR00958 3a01208 Conjugate Tr 100.0 7E-41 1.5E-45 396.3 24.3 245 2-284 446-702 (711)
187 cd03267 ABC_NatA_like Similar 100.0 2.1E-40 4.6E-45 342.1 24.8 198 68-277 33-236 (236)
188 PRK10762 D-ribose transporter 100.0 2.3E-40 5E-45 377.6 27.6 218 51-282 4-228 (501)
189 TIGR03375 type_I_sec_LssB type 100.0 1.3E-40 2.9E-45 393.7 26.4 247 2-284 430-688 (694)
190 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-40 2.2E-45 395.8 25.3 251 2-284 438-700 (710)
191 COG4987 CydC ABC-type transpor 100.0 3.3E-41 7.2E-46 367.0 19.4 245 2-284 305-561 (573)
192 PRK14259 phosphate ABC transpo 100.0 3.7E-40 8E-45 346.8 26.4 223 49-284 11-253 (269)
193 PRK14253 phosphate ABC transpo 100.0 4.8E-40 1.1E-44 341.8 26.9 221 51-282 3-231 (249)
194 PRK14261 phosphate ABC transpo 100.0 7.1E-40 1.5E-44 341.5 27.9 221 51-282 6-235 (253)
195 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-40 2.2E-45 395.5 24.3 246 2-284 440-697 (708)
196 cd03297 ABC_ModC_molybdenum_tr 100.0 4.1E-40 8.8E-45 334.8 25.2 200 56-277 5-214 (214)
197 PRK13642 cbiO cobalt transport 100.0 9.2E-40 2E-44 345.2 28.7 218 51-283 4-228 (277)
198 COG4559 ABC-type hemin transpo 100.0 1.3E-40 2.9E-45 324.6 20.4 218 52-284 2-230 (259)
199 PRK14255 phosphate ABC transpo 100.0 1.1E-39 2.4E-44 339.7 28.9 222 50-282 4-234 (252)
200 PRK14260 phosphate ABC transpo 100.0 7.1E-40 1.5E-44 342.8 27.4 218 51-283 7-242 (259)
201 PRK09700 D-allose transporter 100.0 3.2E-40 7E-45 377.2 26.8 218 51-282 5-232 (510)
202 PRK14249 phosphate ABC transpo 100.0 9.8E-40 2.1E-44 340.0 27.9 221 51-282 4-233 (251)
203 COG4181 Predicted ABC-type tra 100.0 8E-41 1.7E-45 315.8 17.6 211 51-275 6-226 (228)
204 PRK14271 phosphate ABC transpo 100.0 1.4E-39 3E-44 343.7 29.2 223 50-283 20-250 (276)
205 PRK14251 phosphate ABC transpo 100.0 1E-39 2.3E-44 339.8 27.6 217 51-282 4-233 (251)
206 PRK14236 phosphate transporter 100.0 1.2E-39 2.7E-44 343.4 28.5 221 51-282 25-254 (272)
207 cd03252 ABCC_Hemolysin The ABC 100.0 2.1E-40 4.5E-45 342.0 21.9 212 52-283 1-224 (237)
208 TIGR01842 type_I_sec_PrtD type 100.0 4.4E-40 9.6E-45 378.9 27.0 246 2-283 286-541 (544)
209 PRK14258 phosphate ABC transpo 100.0 1.4E-39 3E-44 341.0 28.3 223 51-283 7-244 (261)
210 PRK14238 phosphate transporter 100.0 1.5E-39 3.2E-44 342.6 28.4 222 50-282 23-253 (271)
211 PRK15439 autoinducer 2 ABC tra 100.0 6.5E-40 1.4E-44 374.5 27.5 211 51-282 11-227 (510)
212 PRK14275 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 345.1 28.2 220 48-282 36-268 (286)
213 TIGR03608 L_ocin_972_ABC putat 100.0 4.2E-40 9.1E-45 332.3 22.9 197 54-268 1-206 (206)
214 KOG0055 Multidrug/pheromone ex 100.0 3.2E-40 7E-45 389.4 25.5 251 2-284 953-1213(1228)
215 TIGR02982 heterocyst_DevA ABC 100.0 8.2E-40 1.8E-44 334.0 25.2 209 52-273 2-219 (220)
216 COG1123 ATPase components of v 100.0 6.1E-40 1.3E-44 364.1 25.7 226 49-284 278-519 (539)
217 PRK10418 nikD nickel transport 100.0 1.5E-39 3.2E-44 339.4 27.2 215 51-282 4-228 (254)
218 KOG0057 Mitochondrial Fe/S clu 100.0 1.3E-40 2.9E-45 362.5 19.7 215 50-284 350-574 (591)
219 PRK14257 phosphate ABC transpo 100.0 1.8E-39 3.9E-44 350.3 28.2 224 50-283 79-312 (329)
220 CHL00131 ycf16 sulfate ABC tra 100.0 2.7E-39 5.9E-44 336.7 28.6 219 51-282 7-239 (252)
221 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-39 4E-44 338.2 27.3 216 51-282 3-236 (253)
222 PRK13657 cyclic beta-1,2-gluca 100.0 8.4E-40 1.8E-44 380.0 27.1 245 2-283 301-557 (588)
223 PRK14263 phosphate ABC transpo 100.0 3E-39 6.5E-44 338.4 28.1 223 48-283 5-244 (261)
224 PRK10419 nikE nickel transport 100.0 2.5E-39 5.5E-44 340.3 27.6 222 51-283 3-240 (268)
225 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-39 3.7E-44 325.5 24.8 188 50-277 2-194 (194)
226 PRK14265 phosphate ABC transpo 100.0 2.8E-39 6E-44 341.0 27.6 224 47-283 16-257 (274)
227 TIGR02770 nickel_nikD nickel i 100.0 1.6E-39 3.4E-44 334.2 24.6 204 71-283 1-214 (230)
228 cd03251 ABCC_MsbA MsbA is an e 100.0 6.9E-40 1.5E-44 337.3 21.9 213 52-284 1-225 (234)
229 PRK14254 phosphate ABC transpo 100.0 4.5E-39 9.7E-44 341.2 28.4 216 50-282 38-267 (285)
230 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-39 4.7E-44 369.6 27.7 218 52-281 2-227 (500)
231 PRK14266 phosphate ABC transpo 100.0 4.2E-39 9.1E-44 335.0 27.3 221 51-282 3-232 (250)
232 cd03232 ABC_PDR_domain2 The pl 100.0 2.1E-39 4.6E-44 324.3 24.1 188 51-277 3-192 (192)
233 PRK10982 galactose/methyl gala 100.0 1.7E-39 3.7E-44 369.6 26.4 214 55-282 2-221 (491)
234 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-39 2.6E-44 377.4 25.5 245 2-283 299-555 (571)
235 TIGR01846 type_I_sec_HlyB type 100.0 1.3E-39 2.9E-44 385.0 26.2 246 2-284 423-680 (694)
236 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.7E-40 1.9E-44 337.6 21.3 214 52-284 1-226 (238)
237 PRK11288 araG L-arabinose tran 100.0 3.6E-39 7.8E-44 367.8 28.2 214 51-278 4-223 (501)
238 PRK15056 manganese/iron transp 100.0 3.2E-39 6.9E-44 340.2 25.7 219 50-282 5-228 (272)
239 PRK10261 glutathione transport 100.0 4.1E-39 9E-44 375.6 29.3 223 50-283 312-552 (623)
240 PTZ00265 multidrug resistance 100.0 6.5E-40 1.4E-44 409.8 23.8 257 2-283 1128-1451(1466)
241 PRK14246 phosphate ABC transpo 100.0 4.7E-39 1E-43 336.2 26.2 220 51-283 10-240 (257)
242 PRK10789 putative multidrug tr 100.0 1.7E-39 3.7E-44 375.8 24.6 245 2-284 282-538 (569)
243 PRK14243 phosphate transporter 100.0 5.2E-39 1.1E-43 337.2 25.9 220 51-283 10-247 (264)
244 PRK09580 sufC cysteine desulfu 100.0 1.1E-38 2.4E-43 331.2 28.1 218 52-282 2-233 (248)
245 cd03254 ABCC_Glucan_exporter_l 100.0 1.6E-39 3.5E-44 333.6 21.4 212 51-283 2-225 (229)
246 PRK13538 cytochrome c biogenes 100.0 4.4E-39 9.6E-44 324.9 24.2 197 52-268 2-202 (204)
247 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-39 5.2E-44 330.3 22.1 207 52-277 3-220 (220)
248 TIGR01192 chvA glucan exporter 100.0 3.9E-39 8.4E-44 373.8 26.7 248 2-284 301-558 (585)
249 PRK14264 phosphate ABC transpo 100.0 1.3E-38 2.9E-43 340.8 28.8 225 49-282 43-287 (305)
250 PRK13543 cytochrome c biogenes 100.0 6.5E-39 1.4E-43 326.2 24.9 201 50-270 10-212 (214)
251 PRK13546 teichoic acids export 100.0 2.3E-38 5E-43 332.0 29.8 215 50-284 3-232 (264)
252 PRK03695 vitamin B12-transport 100.0 5E-39 1.1E-43 334.3 24.3 198 71-282 11-220 (248)
253 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.6E-39 7.8E-44 330.4 22.8 202 52-277 23-224 (224)
254 COG4618 ArpD ABC-type protease 100.0 1.9E-39 4.1E-44 350.3 21.6 255 2-287 304-563 (580)
255 TIGR03269 met_CoM_red_A2 methy 100.0 5.8E-39 1.3E-43 367.8 27.0 217 52-285 1-259 (520)
256 cd03230 ABC_DR_subfamily_A Thi 100.0 4.4E-39 9.5E-44 316.7 22.3 169 52-273 1-173 (173)
257 PRK10247 putative ABC transpor 100.0 4.5E-39 9.7E-44 329.8 23.2 207 51-278 7-221 (225)
258 TIGR03269 met_CoM_red_A2 methy 100.0 6.3E-39 1.4E-43 367.4 26.8 220 51-283 279-516 (520)
259 TIGR02204 MsbA_rel ABC transpo 100.0 3.9E-39 8.5E-44 373.6 25.3 248 2-283 303-562 (576)
260 COG4598 HisP ABC-type histidin 100.0 7.1E-40 1.5E-44 311.3 15.5 217 51-283 6-240 (256)
261 PRK10261 glutathione transport 100.0 5.4E-39 1.2E-43 374.6 26.4 221 51-283 12-257 (623)
262 PRK14252 phosphate ABC transpo 100.0 2.1E-38 4.6E-43 332.7 28.1 223 49-282 14-247 (265)
263 TIGR01257 rim_protein retinal- 100.0 8.2E-39 1.8E-43 400.5 28.6 223 50-287 1936-2162(2272)
264 cd03231 ABC_CcmA_heme_exporter 100.0 7.7E-39 1.7E-43 322.5 23.1 194 52-268 1-198 (201)
265 COG1129 MglA ABC-type sugar tr 100.0 8.1E-39 1.8E-43 353.0 25.3 216 50-279 7-229 (500)
266 PRK15134 microcin C ABC transp 100.0 1.3E-38 2.9E-43 365.4 28.0 224 51-283 5-245 (529)
267 PRK15134 microcin C ABC transp 100.0 8.7E-39 1.9E-43 367.0 26.1 222 51-283 275-514 (529)
268 COG4604 CeuD ABC-type enteroch 100.0 2.9E-40 6.4E-45 318.6 11.5 218 52-284 2-225 (252)
269 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.2E-38 2.7E-43 320.8 23.8 186 52-286 1-195 (200)
270 cd03253 ABCC_ATM1_transporter 100.0 4.8E-39 1E-43 331.5 21.2 211 52-283 1-223 (236)
271 PRK09544 znuC high-affinity zi 100.0 1.4E-38 3.1E-43 331.4 24.8 201 51-282 4-207 (251)
272 TIGR02868 CydC thiol reductant 100.0 2.9E-39 6.2E-44 371.1 20.4 220 2-254 299-529 (529)
273 TIGR02324 CP_lyasePhnL phospho 100.0 3.1E-38 6.6E-43 323.1 25.3 206 52-269 2-223 (224)
274 cd03229 ABC_Class3 This class 100.0 1.5E-38 3.3E-43 314.3 22.0 170 52-272 1-178 (178)
275 PRK13539 cytochrome c biogenes 100.0 3E-38 6.6E-43 319.6 23.9 197 51-270 2-200 (207)
276 cd03289 ABCC_CFTR2 The CFTR su 100.0 2E-38 4.4E-43 333.9 23.4 212 51-284 2-225 (275)
277 PRK13549 xylose transporter AT 100.0 2.1E-38 4.6E-43 361.8 25.0 221 51-282 259-492 (506)
278 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-38 4.6E-43 323.5 22.1 207 51-278 2-220 (221)
279 TIGR01189 ccmA heme ABC export 100.0 3.1E-38 6.7E-43 317.2 22.9 193 52-267 1-197 (198)
280 cd03215 ABC_Carb_Monos_II This 100.0 3.3E-38 7.1E-43 313.0 22.4 170 51-273 4-182 (182)
281 PRK09700 D-allose transporter 100.0 2.5E-38 5.3E-43 361.7 24.6 213 51-279 265-493 (510)
282 PRK13545 tagH teichoic acids e 100.0 1.2E-37 2.5E-42 347.2 28.5 214 51-286 21-234 (549)
283 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-38 2.8E-43 326.4 18.8 210 50-273 10-226 (226)
284 COG4161 ArtP ABC-type arginine 100.0 1.8E-38 3.8E-43 297.0 17.9 214 51-280 2-226 (242)
285 PRK10938 putative molybdenum t 100.0 3.7E-38 8E-43 358.6 23.7 208 51-283 3-223 (490)
286 KOG0056 Heavy metal exporter H 100.0 4.3E-39 9.4E-44 343.3 14.9 246 6-284 508-761 (790)
287 TIGR02857 CydD thiol reductant 100.0 3.1E-38 6.8E-43 362.5 23.0 229 2-268 289-529 (529)
288 COG0396 sufC Cysteine desulfur 100.0 2.3E-37 5E-42 306.4 25.3 231 50-293 2-242 (251)
289 PLN03232 ABC transporter C fam 100.0 8.5E-38 1.8E-42 393.7 28.3 249 2-284 1198-1458(1495)
290 PLN03130 ABC transporter C fam 100.0 6.3E-38 1.4E-42 395.4 27.1 249 2-284 1201-1461(1622)
291 TIGR03771 anch_rpt_ABC anchore 100.0 6.3E-38 1.4E-42 321.0 22.1 197 77-283 1-200 (223)
292 cd03246 ABCC_Protease_Secretio 100.0 6.3E-38 1.4E-42 308.5 21.1 168 52-273 1-173 (173)
293 TIGR01166 cbiO cobalt transpor 100.0 6.2E-38 1.3E-42 312.9 21.2 176 68-255 4-188 (190)
294 PRK13540 cytochrome c biogenes 100.0 8.6E-38 1.9E-42 314.6 22.4 192 52-266 2-197 (200)
295 COG4148 ModC ABC-type molybdat 100.0 7.9E-39 1.7E-43 323.2 14.6 193 74-284 16-218 (352)
296 cd03247 ABCC_cytochrome_bd The 100.0 6.2E-38 1.4E-42 309.9 20.8 174 52-277 1-178 (178)
297 COG4172 ABC-type uncharacteriz 100.0 2.8E-37 6E-42 324.9 26.7 227 48-284 273-516 (534)
298 TIGR02633 xylG D-xylose ABC tr 100.0 9E-38 1.9E-42 356.3 24.6 221 50-280 256-488 (500)
299 cd03288 ABCC_SUR2 The SUR doma 100.0 8.9E-38 1.9E-42 326.6 22.4 212 51-283 19-242 (257)
300 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.4E-37 5.2E-42 312.8 24.0 197 51-279 6-207 (207)
301 PRK10762 D-ribose transporter 100.0 1.7E-37 3.6E-42 354.1 24.8 213 51-282 257-482 (501)
302 PRK11288 araG L-arabinose tran 100.0 1.5E-37 3.2E-42 354.6 23.6 214 51-282 257-483 (501)
303 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-37 3.7E-42 313.2 21.2 196 52-272 1-204 (204)
304 COG3845 ABC-type uncharacteriz 100.0 2.8E-37 6.1E-42 334.3 23.8 214 51-278 4-223 (501)
305 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-37 2.6E-42 308.5 18.8 174 53-277 1-180 (180)
306 PRK10522 multidrug transporter 100.0 5.2E-37 1.1E-41 353.6 26.7 232 2-276 291-530 (547)
307 TIGR00957 MRP_assoc_pro multi 100.0 4.6E-37 1E-41 387.6 28.1 249 2-284 1248-1508(1522)
308 PTZ00265 multidrug resistance 100.0 4.4E-37 9.5E-42 384.4 27.2 244 2-271 350-655 (1466)
309 PRK15439 autoinducer 2 ABC tra 100.0 4.6E-37 1E-41 351.0 24.4 212 51-281 268-489 (510)
310 TIGR01187 potA spermidine/putr 100.0 5.5E-37 1.2E-41 330.9 23.6 185 87-283 1-189 (325)
311 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.2E-36 6.8E-41 318.4 27.5 202 49-283 37-246 (282)
312 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-36 3.1E-41 350.3 26.8 209 50-276 336-551 (555)
313 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-36 2.9E-41 296.4 22.4 156 52-275 1-162 (163)
314 PTZ00243 ABC transporter; Prov 100.0 2E-36 4.3E-41 381.2 29.6 214 50-284 1307-1533(1560)
315 cd03228 ABCC_MRP_Like The MRP 100.0 8.8E-37 1.9E-41 299.8 20.4 166 52-272 1-171 (171)
316 cd03290 ABCC_SUR1_N The SUR do 100.0 1.8E-36 3.9E-41 308.8 22.6 199 53-272 2-218 (218)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-36 4.8E-41 295.7 21.1 164 52-272 1-164 (166)
318 PRK10535 macrolide transporter 100.0 6.2E-36 1.4E-40 350.2 28.7 219 51-283 4-231 (648)
319 PRK15064 ABC transporter ATP-b 100.0 2.5E-36 5.5E-41 346.7 24.8 210 52-284 2-242 (530)
320 PRK13541 cytochrome c biogenes 100.0 4.1E-36 8.9E-41 301.2 22.3 190 52-265 2-192 (195)
321 COG4172 ABC-type uncharacteriz 100.0 3.6E-36 7.7E-41 316.5 22.5 227 51-283 6-246 (534)
322 TIGR01271 CFTR_protein cystic 100.0 6.5E-36 1.4E-40 376.2 29.2 213 50-284 1216-1440(1490)
323 PRK15177 Vi polysaccharide exp 100.0 3.3E-36 7.2E-41 306.1 21.3 195 70-288 1-196 (213)
324 PRK11819 putative ABC transpor 100.0 6.1E-36 1.3E-40 345.1 26.2 210 50-282 5-248 (556)
325 COG4619 ABC-type uncharacteriz 100.0 2.1E-37 4.6E-42 291.7 9.6 192 67-273 14-212 (223)
326 PRK10982 galactose/methyl gala 100.0 6E-36 1.3E-40 340.6 23.1 215 50-280 249-476 (491)
327 COG4674 Uncharacterized ABC-ty 100.0 1.9E-36 4.2E-41 291.8 16.0 219 50-283 4-234 (249)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-35 2.6E-40 342.5 25.3 212 50-284 3-248 (552)
329 PRK10938 putative molybdenum t 100.0 5.8E-36 1.3E-40 340.6 22.4 214 50-277 259-485 (490)
330 PRK15064 ABC transporter ATP-b 100.0 9.4E-36 2E-40 341.9 24.3 203 50-283 318-524 (530)
331 COG1119 ModF ABC-type molybden 100.0 3.5E-36 7.6E-41 301.4 17.2 217 48-278 28-256 (257)
332 COG4608 AppF ABC-type oligopep 100.0 1E-35 2.2E-40 303.9 21.0 190 51-284 4-199 (268)
333 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.4E-35 5.2E-40 306.2 23.8 188 71-281 9-204 (246)
334 PLN03232 ABC transporter C fam 100.0 3.4E-35 7.4E-40 370.2 27.5 238 2-284 583-828 (1495)
335 PLN03130 ABC transporter C fam 100.0 5.1E-35 1.1E-39 369.1 27.4 236 2-283 583-827 (1622)
336 PRK11819 putative ABC transpor 100.0 1E-34 2.2E-39 334.9 25.6 203 50-280 323-529 (556)
337 COG4586 ABC-type uncharacteriz 100.0 1.9E-35 4.1E-40 298.3 16.1 207 69-287 37-249 (325)
338 COG5265 ATM1 ABC-type transpor 100.0 1.3E-35 2.8E-40 314.3 15.6 217 49-284 260-486 (497)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-34 4.5E-39 332.2 26.1 203 50-280 321-527 (552)
340 PRK13409 putative ATPase RIL; 100.0 1.3E-34 2.9E-39 334.2 24.0 199 49-279 338-537 (590)
341 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-34 2.6E-39 339.8 22.9 198 51-269 451-652 (659)
342 TIGR00957 MRP_assoc_pro multi 100.0 6E-34 1.3E-38 359.4 28.2 244 2-284 602-850 (1522)
343 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.1E-34 4.6E-39 300.4 19.5 198 56-277 5-220 (255)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.3E-34 9.2E-39 273.1 19.9 144 52-272 1-144 (144)
345 PRK10636 putative ABC transpor 100.0 5.1E-34 1.1E-38 333.3 24.5 203 50-284 311-517 (638)
346 COG1101 PhnK ABC-type uncharac 100.0 1.8E-34 4E-39 282.3 17.3 216 52-276 2-230 (263)
347 COG4136 ABC-type uncharacteriz 100.0 2.5E-34 5.5E-39 266.3 15.6 190 51-254 2-195 (213)
348 COG1134 TagH ABC-type polysacc 100.0 2.9E-33 6.3E-38 280.8 23.6 220 51-289 3-241 (249)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 9.7E-34 2.1E-38 279.2 19.8 155 55-282 4-161 (177)
350 PRK10636 putative ABC transpor 100.0 1.7E-33 3.7E-38 328.9 24.5 206 52-281 2-233 (638)
351 PRK11147 ABC transporter ATPas 100.0 1.5E-33 3.3E-38 329.7 24.1 205 49-281 317-525 (635)
352 cd03238 ABC_UvrA The excision 100.0 1.6E-33 3.5E-38 277.4 20.3 158 67-273 6-166 (176)
353 COG4167 SapF ABC-type antimicr 100.0 9.4E-34 2E-38 270.2 17.5 222 51-283 4-238 (267)
354 PLN03073 ABC transporter F fam 100.0 6.6E-33 1.4E-37 325.7 26.5 206 50-284 507-714 (718)
355 KOG0059 Lipid exporter ABCA1 a 100.0 1.4E-33 3.1E-38 339.3 19.9 223 50-288 563-791 (885)
356 TIGR01271 CFTR_protein cystic 100.0 1E-32 2.2E-37 347.4 27.6 191 69-283 439-635 (1490)
357 PRK11147 ABC transporter ATPas 100.0 9.9E-33 2.1E-37 322.9 25.2 206 51-282 3-241 (635)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.1E-32 1.1E-36 262.1 20.9 151 54-272 2-157 (157)
359 KOG0054 Multidrug resistance-a 100.0 1.8E-31 3.8E-36 322.4 25.7 239 2-283 485-730 (1381)
360 PRK13409 putative ATPase RIL; 100.0 4.4E-32 9.6E-37 313.3 19.8 181 68-271 86-287 (590)
361 COG4133 CcmA ABC-type transpor 100.0 3.5E-32 7.5E-37 261.9 15.3 187 51-256 2-192 (209)
362 COG4107 PhnK ABC-type phosphon 100.0 7.7E-32 1.7E-36 255.3 14.6 215 51-284 6-241 (258)
363 COG0488 Uup ATPase components 100.0 1.7E-31 3.7E-36 301.7 19.9 206 51-280 3-236 (530)
364 PTZ00243 ABC transporter; Prov 100.0 5.4E-31 1.2E-35 332.2 23.2 193 68-283 672-869 (1560)
365 KOG0054 Multidrug resistance-a 100.0 1.8E-30 3.9E-35 313.7 21.9 247 4-284 1104-1362(1381)
366 PLN03073 ABC transporter F fam 100.0 1.7E-30 3.7E-35 305.3 18.9 215 48-281 174-428 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 8.9E-30 1.9E-34 261.3 21.6 190 67-277 6-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 3.9E-30 8.5E-35 243.0 12.7 209 50-269 3-226 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 7.1E-30 1.5E-34 240.6 12.7 132 72-223 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1E-28 2.2E-33 257.3 20.3 195 69-279 8-261 (261)
371 COG0488 Uup ATPase components 100.0 1.7E-27 3.7E-32 269.4 22.2 204 48-283 318-524 (530)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 4.6E-28 1E-32 243.4 13.9 165 73-270 14-190 (197)
373 COG1129 MglA ABC-type sugar tr 99.9 1.2E-26 2.5E-31 256.8 22.6 214 49-280 261-486 (500)
374 COG4138 BtuD ABC-type cobalami 99.9 1.6E-28 3.5E-33 233.1 6.1 206 51-283 3-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-26 4.8E-31 238.3 13.7 183 68-269 14-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3E-27 6.5E-32 240.1 3.6 187 51-269 5-203 (212)
377 COG4178 ABC-type uncharacteriz 99.9 2.2E-25 4.8E-30 251.0 18.2 197 49-269 390-587 (604)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.8E-26 8.3E-31 238.0 11.1 182 82-269 25-242 (251)
379 PRK00635 excinuclease ABC subu 99.9 1.2E-24 2.6E-29 269.8 24.9 137 139-283 759-905 (1809)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.1E-25 8.9E-30 224.7 16.1 191 51-272 5-210 (213)
381 COG3845 ABC-type uncharacteriz 99.9 2.3E-24 5E-29 234.1 21.2 221 48-281 254-489 (501)
382 COG4615 PvdE ABC-type sideroph 99.9 1.2E-25 2.7E-30 236.3 10.8 234 2-277 291-530 (546)
383 cd03240 ABC_Rad50 The catalyti 99.9 6.1E-25 1.3E-29 222.0 13.3 164 75-271 16-199 (204)
384 COG4170 SapD ABC-type antimicr 99.9 1.3E-24 2.7E-29 211.9 11.2 229 52-284 4-248 (330)
385 PRK00349 uvrA excinuclease ABC 99.9 1.7E-23 3.6E-28 250.2 22.7 125 143-283 792-926 (943)
386 TIGR00630 uvra excinuclease AB 99.9 7.9E-23 1.7E-27 244.0 23.5 125 142-282 789-923 (924)
387 KOG0927 Predicted transporter 99.9 2.4E-23 5.2E-28 227.1 13.8 215 49-282 73-307 (614)
388 COG1245 Predicted ATPase, RNas 99.9 2.2E-22 4.9E-27 215.3 16.6 190 49-269 340-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.4E-22 3E-27 203.9 14.1 168 72-272 12-192 (198)
390 KOG0927 Predicted transporter 99.9 5.2E-23 1.1E-27 224.5 10.1 203 48-279 386-591 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.5E-22 3.2E-27 210.7 10.5 175 84-269 24-232 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 4.9E-21 1.1E-25 210.5 16.7 204 50-270 432-641 (659)
393 KOG0062 ATPase component of AB 99.9 8E-22 1.7E-26 214.2 10.2 201 49-279 78-280 (582)
394 KOG0066 eIF2-interacting prote 99.8 1.2E-20 2.6E-25 200.2 13.3 191 49-270 584-776 (807)
395 KOG2355 Predicted ABC-type tra 99.8 5.6E-20 1.2E-24 179.2 16.8 212 49-285 11-238 (291)
396 PF01061 ABC2_membrane: ABC-2 99.8 3.2E-22 7E-27 200.1 0.5 208 384-602 1-210 (210)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.6E-20 3.4E-25 189.3 11.5 146 72-277 17-172 (200)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.4E-20 7.5E-25 188.6 13.3 82 191-273 123-212 (213)
399 KOG0062 ATPase component of AB 99.8 9E-20 1.9E-24 198.4 16.0 199 48-275 359-559 (582)
400 COG1245 Predicted ATPase, RNas 99.8 3.8E-20 8.2E-25 198.4 11.0 168 79-270 97-288 (591)
401 cd03239 ABC_SMC_head The struc 99.8 7.3E-19 1.6E-23 173.9 15.9 74 195-270 95-172 (178)
402 COG0178 UvrA Excinuclease ATPa 99.8 1.6E-18 3.4E-23 197.1 19.7 127 143-284 784-919 (935)
403 PRK00635 excinuclease ABC subu 99.8 3E-18 6.5E-23 213.4 22.3 127 143-284 1661-1796(1809)
404 COG2401 ABC-type ATPase fused 99.8 1.3E-18 2.9E-23 184.5 14.6 186 68-274 395-588 (593)
405 KOG0064 Peroxisomal long-chain 99.8 5.7E-19 1.2E-23 191.8 11.8 187 51-261 481-674 (728)
406 cd03283 ABC_MutS-like MutS-lik 99.8 8.3E-19 1.8E-23 176.6 10.6 147 69-268 14-163 (199)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.1E-18 2.4E-23 178.6 9.6 153 68-278 16-175 (222)
408 cd03241 ABC_RecN RecN ATPase i 99.8 6.3E-18 1.4E-22 178.7 15.7 76 194-272 170-249 (276)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 5E-18 1.1E-22 165.4 11.6 75 194-270 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 5.6E-17 1.2E-21 194.5 15.1 136 140-283 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 7.2E-17 1.6E-21 193.3 15.8 135 141-283 433-582 (924)
412 cd03242 ABC_RecF RecF is a rec 99.7 4.7E-16 1E-20 164.0 17.0 77 192-273 181-269 (270)
413 cd03243 ABC_MutS_homologs The 99.7 3E-17 6.4E-22 165.7 6.7 154 75-281 22-176 (202)
414 KOG0066 eIF2-interacting prote 99.7 1E-16 2.2E-21 170.5 8.5 214 49-278 262-493 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 7.5E-16 1.6E-20 155.6 9.5 142 68-262 15-157 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 5.5E-15 1.2E-19 150.8 11.4 158 69-282 18-179 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.5 5.9E-14 1.3E-18 150.0 12.8 177 68-268 348-530 (592)
418 TIGR02858 spore_III_AA stage I 99.5 2.9E-14 6.4E-19 149.6 10.2 137 83-281 112-266 (270)
419 smart00534 MUTSac ATPase domai 99.5 4.2E-14 9.1E-19 140.8 5.1 80 193-275 60-141 (185)
420 PRK00064 recF recombination pr 99.4 5.1E-12 1.1E-16 138.7 20.4 77 193-273 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 9.8E-14 2.1E-18 141.6 6.1 88 168-269 121-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.4 7E-13 1.5E-17 157.5 10.2 129 74-254 313-445 (771)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2E-12 4.3E-17 131.7 12.1 128 71-254 18-154 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 1E-12 2.3E-17 118.3 6.7 72 69-152 2-78 (107)
425 KOG0063 RNAse L inhibitor, ABC 99.3 3E-12 6.6E-17 137.1 9.0 188 80-286 98-309 (592)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.3E-11 5E-16 124.5 13.9 138 69-262 18-160 (222)
427 cd01128 rho_factor Transcripti 99.3 1.3E-11 2.8E-16 128.3 10.2 181 77-273 11-211 (249)
428 TIGR01247 drrB daunorubicin re 99.3 3E-10 6.6E-15 117.1 19.9 227 392-655 1-234 (236)
429 PTZ00132 GTP-binding nuclear p 99.3 7.2E-12 1.6E-16 127.4 6.7 45 198-242 156-205 (215)
430 TIGR00634 recN DNA repair prot 99.2 1.6E-11 3.4E-16 142.5 9.8 77 193-272 439-519 (563)
431 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 3.3E-10 7.1E-15 114.6 17.7 152 479-662 57-208 (208)
432 COG0178 UvrA Excinuclease ATPa 99.2 1.1E-10 2.4E-15 134.0 14.7 138 140-284 426-577 (935)
433 PRK10869 recombination and rep 99.2 3.7E-11 8E-16 138.6 10.6 75 194-271 430-508 (553)
434 PRK08533 flagellar accessory p 99.2 1.3E-10 2.7E-15 119.9 13.2 150 78-269 20-184 (230)
435 PRK00409 recombination and DNA 99.2 1.2E-11 2.7E-16 147.3 6.6 81 193-276 389-470 (782)
436 PRK07721 fliI flagellum-specif 99.2 3.2E-10 6.8E-15 126.7 17.3 172 69-281 146-340 (438)
437 TIGR00618 sbcc exonuclease Sbc 99.2 4.8E-11 1E-15 147.8 11.4 80 191-271 947-1036(1042)
438 cd01124 KaiC KaiC is a circadi 99.2 2.8E-10 6E-15 112.7 13.1 145 85-269 2-163 (187)
439 PHA02562 46 endonuclease subun 99.2 4.4E-11 9.6E-16 138.9 8.5 79 191-273 465-555 (562)
440 PF13304 AAA_21: AAA domain; P 99.2 8.3E-11 1.8E-15 119.5 9.3 63 192-254 234-299 (303)
441 TIGR01291 nodJ ABC-2 type tran 99.1 3.4E-09 7.3E-14 110.9 20.7 232 386-659 7-249 (253)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.1 2.9E-10 6.3E-15 116.1 11.0 134 68-254 16-153 (218)
443 TIGR00025 Mtu_efflux ABC trans 99.1 9.2E-09 2E-13 106.0 20.5 223 398-657 2-228 (232)
444 PRK13695 putative NTPase; Prov 99.1 5.1E-11 1.1E-15 117.3 3.4 80 193-276 77-156 (174)
445 TIGR03861 phenyl_ABC_PedC alco 99.0 4.1E-08 8.9E-13 102.5 22.4 239 383-658 1-249 (253)
446 PRK03918 chromosome segregatio 99.0 7.3E-10 1.6E-14 135.4 10.1 77 191-269 785-867 (880)
447 PRK13830 conjugal transfer pro 99.0 5.7E-09 1.2E-13 125.8 17.0 69 210-279 650-728 (818)
448 COG3910 Predicted ATPase [Gene 99.0 5.4E-09 1.2E-13 101.8 13.3 63 192-255 127-189 (233)
449 cd01120 RecA-like_NTPases RecA 99.0 2.5E-09 5.4E-14 102.3 10.8 63 195-257 68-140 (165)
450 TIGR02788 VirB11 P-type DNA tr 99.0 1.3E-09 2.8E-14 117.3 9.8 142 75-283 137-280 (308)
451 PRK10246 exonuclease subunit S 99.0 1.5E-09 3.2E-14 134.2 11.2 80 190-270 945-1032(1047)
452 TIGR00606 rad50 rad50. This fa 99.0 1.7E-09 3.6E-14 136.9 11.3 76 184-262 1191-1277(1311)
453 PRK06793 fliI flagellum-specif 99.0 2.3E-09 5E-14 119.0 10.5 169 52-279 131-306 (432)
454 PRK06067 flagellar accessory p 98.9 3E-08 6.6E-13 102.3 16.4 162 71-270 13-187 (234)
455 PRK01156 chromosome segregatio 98.9 4.4E-09 9.5E-14 128.8 10.8 77 191-269 798-883 (895)
456 PRK15066 inner membrane transp 98.9 6.6E-07 1.4E-11 93.8 24.0 244 382-664 6-256 (257)
457 cd01131 PilT Pilus retraction 98.8 2.4E-08 5.2E-13 100.6 10.6 57 204-269 66-122 (198)
458 TIGR02168 SMC_prok_B chromosom 98.8 7E-09 1.5E-13 130.1 7.8 76 191-269 1086-1165(1179)
459 cd01125 repA Hexameric Replica 98.8 5.2E-08 1.1E-12 101.0 12.0 136 82-255 1-160 (239)
460 TIGR03238 dnd_assoc_3 dnd syst 98.7 9.7E-09 2.1E-13 114.0 4.9 50 69-123 19-69 (504)
461 PRK02224 chromosome segregatio 98.7 3.2E-08 7E-13 121.1 9.6 77 192-270 779-868 (880)
462 PRK06995 flhF flagellar biosyn 98.7 6.5E-08 1.4E-12 109.0 10.7 150 71-252 245-400 (484)
463 TIGR02169 SMC_prok_A chromosom 98.7 3E-08 6.5E-13 124.6 8.6 77 191-270 1071-1151(1164)
464 smart00382 AAA ATPases associa 98.6 9.8E-07 2.1E-11 81.0 14.7 118 81-252 1-124 (148)
465 PRK13891 conjugal transfer pro 98.5 1.1E-06 2.5E-11 106.6 15.3 69 205-274 680-751 (852)
466 TIGR02655 circ_KaiC circadian 98.5 4.8E-08 1E-12 111.5 3.0 165 71-269 9-190 (484)
467 COG0842 ABC-type multidrug tra 98.5 6.1E-06 1.3E-10 85.9 18.4 153 482-662 131-284 (286)
468 TIGR01026 fliI_yscN ATPase Fli 98.5 1.8E-06 3.9E-11 96.9 14.9 172 69-281 151-345 (440)
469 PRK07196 fliI flagellum-specif 98.5 1.8E-07 3.8E-12 104.2 5.7 173 68-276 142-333 (434)
470 COG0419 SbcC ATPase involved i 98.4 6.4E-07 1.4E-11 109.9 10.6 78 191-270 812-897 (908)
471 TIGR00611 recf recF protein. A 98.4 3.3E-07 7.2E-12 100.9 7.2 59 194-255 275-342 (365)
472 cd01130 VirB11-like_ATPase Typ 98.4 6.6E-07 1.4E-11 89.2 7.9 81 71-154 14-98 (186)
473 TIGR03881 KaiC_arch_4 KaiC dom 98.4 9.1E-08 2E-12 98.3 1.6 33 71-103 8-41 (229)
474 TIGR01420 pilT_fam pilus retra 98.4 2.3E-06 5.1E-11 93.5 12.7 56 204-268 187-242 (343)
475 PRK14079 recF recombination pr 98.4 6.6E-07 1.4E-11 98.0 8.1 74 194-275 263-345 (349)
476 cd02023 UMPK Uridine monophosp 98.3 5.1E-07 1.1E-11 90.7 5.6 112 84-227 1-113 (198)
477 PRK13898 type IV secretion sys 98.3 1.3E-05 2.8E-10 97.2 17.8 48 208-255 638-686 (800)
478 PRK05399 DNA mismatch repair p 98.3 1.4E-06 3.1E-11 105.6 9.1 138 69-264 595-738 (854)
479 TIGR00767 rho transcription te 98.3 1.3E-06 2.9E-11 95.7 7.7 81 2-107 102-193 (415)
480 PRK06002 fliI flagellum-specif 98.3 1.8E-06 3.9E-11 96.3 8.3 186 48-276 136-343 (450)
481 PLN03210 Resistant to P. syrin 98.2 4E-06 8.7E-11 105.5 9.8 163 74-291 199-365 (1153)
482 TIGR02680 conserved hypothetic 98.1 2.9E-06 6.2E-11 107.6 7.4 60 191-253 1244-1315(1353)
483 cd01122 GP4d_helicase GP4d_hel 98.1 7.9E-05 1.7E-09 78.5 16.1 37 69-105 17-53 (271)
484 PRK13873 conjugal transfer ATP 98.1 0.00015 3.4E-09 88.0 19.6 61 210-270 633-702 (811)
485 PRK09825 idnK D-gluconate kina 98.1 2.5E-06 5.4E-11 84.4 3.5 64 81-151 2-69 (176)
486 PF13555 AAA_29: P-loop contai 98.1 4.8E-06 1E-10 67.6 4.3 37 72-108 12-49 (62)
487 TIGR01248 drrC daunorubicin re 98.0 2.9E-05 6.3E-10 75.0 10.1 125 469-598 20-146 (152)
488 cd00009 AAA The AAA+ (ATPases 98.0 4.6E-05 1E-09 70.6 11.0 55 200-255 72-131 (151)
489 PRK06315 type III secretion sy 98.0 1.3E-05 2.9E-10 89.5 8.5 108 69-180 152-277 (442)
490 PRK01889 GTPase RsgA; Reviewed 98.0 5.8E-06 1.2E-10 90.9 5.1 76 72-151 185-262 (356)
491 PF06422 PDR_CDR: CDR ABC tran 98.0 8.6E-06 1.9E-10 73.4 5.3 56 612-668 26-81 (103)
492 cd01876 YihA_EngB The YihA (En 97.9 1.9E-05 4E-10 75.4 6.9 64 169-240 101-169 (170)
493 PF13558 SbcCD_C: Putative exo 97.9 2E-05 4.4E-10 69.2 6.4 49 191-239 29-90 (90)
494 PF12679 ABC2_membrane_2: ABC- 97.9 0.0014 3.1E-08 68.6 20.9 155 479-658 107-273 (277)
495 TIGR00152 dephospho-CoA kinase 97.9 1.6E-05 3.4E-10 79.4 5.5 72 197-270 60-132 (188)
496 TIGR03518 ABC_perm_GldF glidin 97.9 0.0014 3E-08 68.2 20.2 220 387-658 2-238 (240)
497 PF00488 MutS_V: MutS domain V 97.9 0.00035 7.6E-09 72.4 15.3 52 209-262 119-172 (235)
498 TIGR02903 spore_lon_C ATP-depe 97.8 4.2E-05 9.2E-10 89.8 9.0 111 81-239 174-291 (615)
499 PRK00454 engB GTP-binding prot 97.8 0.00024 5.2E-09 70.5 13.2 67 169-243 126-195 (196)
500 TIGR03880 KaiC_arch_3 KaiC dom 97.8 0.00025 5.5E-09 72.6 13.6 59 211-269 106-177 (224)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-109 Score=955.85 Aligned_cols=585 Identities=40% Similarity=0.646 Sum_probs=513.7
Q ss_pred CCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 005142 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (712)
Q Consensus 46 ~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~- 124 (712)
...++.+.|+|++++.+.+....+++|+|||++++|||++|||||||||||||||+|+|+...+...+|+|++||++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998654335689999999999999999999999999999999999999876568999999997643
Q ss_pred -CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..++.+|||+|||.++|+|||+|+|.|+|.+|+|..+++++++++|+++++++||++|+||++|+...||+||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 2357799999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||.+|++||+||||||||||||+.++.++++.|+++|++|+|||+++|||+++++++||++++|++|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCchhHHHHhhccc--hhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHHH
Q 005142 284 EFFAQAGFPCPALRNPSDHFLRCINSD--FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (712)
Q Consensus 284 ~~f~~~g~~~p~~~np~d~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~ 361 (712)
+||++.|++||++.||+||++++++.+ .+...+ ........+.++..+...+....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE----------------------AVRIAKLINKFSQTDNLKKTLEA 317 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh----------------------HHHHHHHhhhccccchhhhhHHH
Confidence 999999999999999999999998853 111110 01111122222210000000000
Q ss_pred Hh-hhhhccCccccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHH
Q 005142 362 VE-GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCAS 440 (712)
Q Consensus 362 ~~-~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lf 440 (712)
.. ...+ .... .....++||.|++.|++|.+++.+|||.+++.|+++++++|+++|++||+++++..++++|.|++|
T Consensus 318 ~~~~~~~--~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~ 394 (613)
T KOG0061|consen 318 LEKSLST--SKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFF 394 (613)
T ss_pred Hhhhccc--cccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Confidence 00 0000 0000 111278999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hHhHHHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHH
Q 005142 441 FVFGFVTFMSIG-GFPSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH 519 (712)
Q Consensus 441 f~~~~~~f~s~~-~~p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~ 519 (712)
|++.++.|.++. .++.|+.||+ +|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+||++++.+
T Consensus 395 ~~~~~~~f~~~~~~i~~f~~e~~------~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~ 468 (613)
T KOG0061|consen 395 FILSFMTFLSMFGAVPVFPQERP------IFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSR 468 (613)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHH------HHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 999999998876 6999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHH
Q 005142 520 YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQ 599 (712)
Q Consensus 520 f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~ 599 (712)
|++|++++++..++++++++++++++||..+|+++++++.++|++|+|||++.++||++ .+|++|+|+++|++||+++
T Consensus 469 f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~--~~w~~~~S~~ry~~e~l~~ 546 (613)
T KOG0061|consen 469 FLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKY--FRWISYLSYFRYAFEALLI 546 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHH--HHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999973 3469999999999999999
Q ss_pred HhhCCCccCCCCC--CCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005142 600 NDLKGLWFDNQSP--DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 665 (712)
Q Consensus 600 nef~g~~f~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~~~ 665 (712)
|||.+....|... ..+..+|+++|++ .+++.. ++|.|+.++++++++||+++|++|+++.+.+.
T Consensus 547 n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 547 NQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFEDS-SFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHhhccccccccCcCCcccccHHHHHHh-cCCccc-ccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 9998744445332 3577899999998 788754 59999999999999999999999999887653
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1e-103 Score=916.67 Aligned_cols=566 Identities=32% Similarity=0.537 Sum_probs=499.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEecCCCCCCCCC
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (712)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++...+|+|.+||++... .++.++||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35789999999999999999999999999999999999987754468999999997532 2467899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~-~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
|+|||.|++.++.+...++++++++++++++.+||.+++||.+|+. ..++|||||||||+||++|+.+|+++||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999999887776677788889999999999999999999975 368999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCchhHH
Q 005142 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~ 303 (712)
|||+.++..+++.|++++++|+|||+++|||+++++++||++++|++|+++|+|+++++.+||++.|++||+..||+||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHHHHhhhhhcc-C-----ccccCCC
Q 005142 304 LRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK-G-----TVLDAGG 377 (712)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~-----~~~~~~~ 377 (712)
+++++.+.+.. ....+..+.+.+.|+.++..++..+......... + ...+..+
T Consensus 276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (617)
T TIGR00955 276 VQVLAVIPGSE---------------------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334 (617)
T ss_pred HHHhhcCcccc---------------------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccc
Confidence 99876542110 0011233456677777665554443332111110 0 0011234
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHH-hhHhH
Q 005142 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPS 456 (712)
Q Consensus 378 ~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lff~~~~~~f~s~-~~~p~ 456 (712)
+..+|++|+.+|++|++++.+|||.+++.|+++++++|+++|++||+++++++++++|.|++|+++++++|.++ ..++.
T Consensus 335 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~ 414 (617)
T TIGR00955 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINV 414 (617)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999888865 56789
Q ss_pred HHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH
Q 005142 457 FVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 536 (712)
Q Consensus 457 ~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s 536 (712)
|..||+ +|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+++++
T Consensus 415 f~~er~------v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s 488 (617)
T TIGR00955 415 FTAELP------VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATS 488 (617)
T ss_pred HHHHHH------HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCcc-CCCCC---
Q 005142 537 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF-DNQSP--- 612 (712)
Q Consensus 537 l~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f-~~~~~--- 612 (712)
+++++++++|+..+|..+++++.+++++|+||++++++||+ +|+ |++|+||++|++|+++.|||.|..+ +|...
T Consensus 489 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~ 566 (617)
T TIGR00955 489 FGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTT 566 (617)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcCcC
Confidence 99999999999999999999999999999999999999996 465 5999999999999999999999876 56432
Q ss_pred CCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005142 613 DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 663 (712)
Q Consensus 613 ~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~ 663 (712)
+.|..+|+++|+. ||++.+ +.|.|+++|++++++|++++|++||++.+.
T Consensus 567 ~~c~~~g~~~l~~-~g~~~~-~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 567 GPCPSSGEVILET-LSFRNA-DLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred CCCCcChHHHHHh-cCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2266789999997 899864 489999999999999999999999987654
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.8e-103 Score=911.52 Aligned_cols=576 Identities=30% Similarity=0.481 Sum_probs=482.4
Q ss_pred CCceeEEEEEeEEEEEEccC------------------------CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 005142 46 GDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101 (712)
Q Consensus 46 ~~~~~~l~~~~l~~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~ 101 (712)
...++.++|.|++|+++..+ -+++.+|+|||+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34578999999999985431 024679999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEecCC-CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005142 102 LSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (712)
Q Consensus 102 LaG~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (712)
|+|+.+++ ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||+
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998764 258999999987532 2356999999999999999999999998777665555667778899999999999
Q ss_pred ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh
Q 005142 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (712)
Q Consensus 181 ~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~ 260 (712)
++.||.+|+..+++||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999998899999999999878999
Q ss_pred cCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCchhHHHHhhccchhhHHHhhhccccccccCCCCcchhhchHH
Q 005142 261 LFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 340 (712)
Q Consensus 261 ~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (712)
+||++++|++|+++++|+++++.+||++.|++||.+.|||||++++++.+.+.. +. . .... ..
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~-~----~~~~-------~~ 335 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV-S----EREK-------PN 335 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-c----cccc-------ch
Confidence 999999999999999999999999999999999999999999999987642110 00 0 0000 01
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhh--hhh---c-----cCccc--cCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 005142 341 AIKNLIDFYQTSQHSYAAKEKVEG--ISK---V-----KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408 (712)
Q Consensus 341 ~~~~l~~~~~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~ 408 (712)
..+.+.+.|++... ....+..+. ... . ..... ....+.++||+|+.+|++|++++ +||+.+.+.|+
T Consensus 336 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~ 413 (659)
T PLN03211 336 VKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRV 413 (659)
T ss_pred HHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHH
Confidence 11233445542211 111111100 000 0 00000 11224578999999999999998 89999999999
Q ss_pred HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHH-HhhHhHHHHhhcccCcceeEEeeccCCccchHHHHHH
Q 005142 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIG 487 (712)
Q Consensus 409 ~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lff~~~~~~f~s-~~~~p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la 487 (712)
++++++|+++|++||+++ ..++++|.|++||++.++.+.+ +..++.|+.||+ +|+||+.+|+|++++|++|
T Consensus 414 ~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~------v~~rE~~~~~Y~~~~Y~la 485 (659)
T PLN03211 414 FQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERA------IFVKERASGMYTLSSYFMA 485 (659)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHhhhCCCCCHHHHHHH
Confidence 999999999999999985 6789999999999988877654 567899999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc
Q 005142 488 NTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 567 (712)
Q Consensus 488 ~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsG 567 (712)
++++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++++++||+.+|+.+++++++++++|||
T Consensus 486 ~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsG 565 (659)
T PLN03211 486 RIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGG 565 (659)
T ss_pred HHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCc-----cCCCCC-----CCCCccHHHHHhhhcCcccccchhH
Q 005142 568 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSP-----DLPKIPGEYVLENVFQIDVRRSKWI 637 (712)
Q Consensus 568 f~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~-----f~~~~~-----~~~~~~G~~~L~~~~~~~~~~~~w~ 637 (712)
||++ +||+ +|+ |++|+||++||+||++.|||.+.. ++|..+ +.|...+++++. +.+.|.
T Consensus 566 f~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~ 634 (659)
T PLN03211 566 FYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPAT 634 (659)
T ss_pred hhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHH
Confidence 9996 7986 466 499999999999999999997643 356432 123334444433 235899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005142 638 DLSVIFSMIISYRIIFFVMIKIS 660 (712)
Q Consensus 638 ~~~iL~~~~~~f~~l~~~~L~~~ 660 (712)
|+++|++++++||+++|++|++.
T Consensus 635 ~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 635 SVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999854
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-101 Score=961.52 Aligned_cols=591 Identities=22% Similarity=0.381 Sum_probs=510.1
Q ss_pred ceeEEEEEeEEEEEEcc---------------------------CCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005142 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~ 100 (712)
+.+.+.|+||++..... +.+++++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 36789999999876321 112367999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEecCC----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC----CCCHHHHHHH-H
Q 005142 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (712)
Q Consensus 101 ~LaG~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~----~~~~~~~~~~-v 170 (712)
+|+|+.++. ...+|+|.+||++... .++.++||+|+|.+++.+||+|||.|+++++.+. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987531 2356999999999999999999999998877543 2344444434 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 005142 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (712)
Q Consensus 171 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (712)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999987 4999999
Q ss_pred EeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCchhHHHHhhccchhhHHHhhhccccccccCC
Q 005142 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (712)
Q Consensus 250 ~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (712)
++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++++.+.+...+.. +.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~---------e~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGY---------EK 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccc---------cc
Confidence 999998899999999999999999999999999999999999999999999999998765422111100 00
Q ss_pred CCcchhhchHHHHHHHHHHHhhchhhHHHHHHHhhhhhc------------------cCccccCCCCCCcHHHHHHHHHH
Q 005142 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (712)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~s~~~Q~~~L~~ 391 (712)
..+ ...+++++.|++|+.+++..+.+++.... .......+.+..|+|+|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 011 11235778888887766555544322110 00011124577899999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcccCcceeEE
Q 005142 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKFCNIFQVFQ 471 (712)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lff~~~~~~f~s~~~~p~~~~er~f~~~~~vf~ 471 (712)
|++++++|||.++++|+++++++|+++|++||+++++++++++|.|++||++.+.+|+++..++.++.||+ ||+
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~------i~~ 483 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP------IVE 483 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------cee
Confidence 99999999999999999999999999999999999999999999999999999999999988998899999 999
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 005142 472 RERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMG 551 (712)
Q Consensus 472 rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a 551 (712)
||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||+.+|
T Consensus 484 re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A 563 (1394)
T TIGR00956 484 KHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEA 563 (1394)
T ss_pred eeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCC--C-----------------
Q 005142 552 IITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P----------------- 612 (712)
Q Consensus 552 ~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~--~----------------- 612 (712)
+.+++++++++++|+||++++++||+ +|+ |++|+||++|||||++.|||+|..++|.. |
T Consensus 564 ~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~ 641 (1394)
T TIGR00956 564 MTPAAILLLALSIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTV 641 (1394)
T ss_pred HHHHHHHHHHHHHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccC
Confidence 99999999999999999999999996 455 59999999999999999999999998841 1
Q ss_pred -----CCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005142 613 -----DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 663 (712)
Q Consensus 613 -----~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~ 663 (712)
|.+.++|+++|+..|+++.+ ++|+|++||++|+++|++++++++.+....
T Consensus 642 ~g~~~g~~~~~G~~~L~~~~~~~~~-~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 642 VGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred CCCcCCcccccHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 12356999999976888765 599999999999999999999999887633
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-100 Score=948.94 Aligned_cols=580 Identities=27% Similarity=0.408 Sum_probs=508.7
Q ss_pred eeEEEEEeEEEEEEccC--------CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 49 SARLTWKDLTVMVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
+..++|+||+|.++.+. .+.+.+|+|||++++||+++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996432 13457999999999999999999999999999999999997643 3589999999
Q ss_pred EecCC--CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 121 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
++.+. ..+.+|||+|+|.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998887765566667778899999999999999999998777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC-CeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-G~iv~~G 277 (712)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999989999999999998788999999999996 8999999
Q ss_pred Ch----hhHHHHHHHc-CCC-CCCCCCchhHHHHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhh
Q 005142 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (712)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (712)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5799999997 675 999999999999987543110 001146788988
Q ss_pred chhhHHHHHHHhhhhhccCc--cc-cCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 005142 352 SQHSYAAKEKVEGISKVKGT--VL-DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (712)
Q Consensus 352 s~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~ 428 (712)
|+.++...+.+++....... .. ...++.+++|+|+.+|++|+++++||||.+++.|+++.+++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 88877666555443321111 11 1246789999999999999999999999999999999999999999999999987
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHH-hhHhHHHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 005142 429 Y---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISG 504 (712)
Q Consensus 429 ~---~~i~~r~g~lff~~~~~~f~s~-~~~p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~ 504 (712)
. .++++|.|++|+++.++.+..+ ..+|.|..||+ +|+|||.+|+|++++|++|++++|+|+.++.+++|+
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~------vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~ 1311 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERT------VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYT 1311 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5677889999999888887655 45799999999 999999999999999999999999999999999999
Q ss_pred hhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCcccccccc
Q 005142 505 TICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPM 584 (712)
Q Consensus 505 ~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~ 584 (712)
+|+|||+||++++.+||+|+++++++.++++++|+++++++||..+|.++++++++++++|+||++++++||. +|+ |+
T Consensus 1312 ~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~ 1389 (1470)
T PLN03140 1312 LIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WY 1389 (1470)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 576 59
Q ss_pred ceecHHHHHHHHHHHHhhCCCccCCCCCCC-CCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005142 585 SYLSFHYWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 663 (712)
Q Consensus 585 ~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~-~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~ 663 (712)
+|+||++|+++|++.|||.|.+++|..++. +..+|++++.++||++.+ +.|++++++++|+++|++++++++++.+..
T Consensus 1390 ~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1390 YWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPD-FMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcc-cccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999887766652 235788998888999865 599999999999999999999999987654
Q ss_pred c
Q 005142 664 T 664 (712)
Q Consensus 664 ~ 664 (712)
+
T Consensus 1469 ~ 1469 (1470)
T PLN03140 1469 T 1469 (1470)
T ss_pred c
Confidence 3
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.1e-99 Score=937.38 Aligned_cols=592 Identities=23% Similarity=0.379 Sum_probs=506.1
Q ss_pred CceeEEEEEeEEEEEEc-----------------------------cCCcccceeeceEEEEeCCeEEEEECCCCCcHHH
Q 005142 47 DVSARLTWKDLTVMVTL-----------------------------SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKST 97 (712)
Q Consensus 47 ~~~~~l~~~~l~~~~~~-----------------------------~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKST 97 (712)
.+.+.+.|+||++.... .+...+.||+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 35678999999997651 0123467999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-------CCCHHHH--
Q 005142 98 LLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK-- 166 (712)
Q Consensus 98 LL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-------~~~~~~~-- 166 (712)
|||+|+|+++++...+|+|.+||++... .++.++||+|+|.+++.+||+|||.|+++++.+. ..+++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 9999999998765569999999987532 2467999999999999999999999998765321 1111211
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005142 167 ----------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (712)
Q Consensus 167 ----------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsg 224 (712)
+..++++++.+||++|+||.||+..+++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235779999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCchhHH
Q 005142 225 LDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303 (712)
Q Consensus 225 LD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~ 303 (712)
||+.++.++++.|+++++ .|+|||+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 5899999999998899999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHHHHhhhhhc---cCccccCCCCCC
Q 005142 304 LRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQA 380 (712)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 380 (712)
+++++.+.... . +.....|.... ..+++++.|++|+..+...++++..... .......+++..
T Consensus 447 ~~v~s~~~~~~--~--------~~~~~~p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 447 QEVTSKKDQEQ--Y--------WADRNKPYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred HHhcCchhhhh--h--------hhccCCccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99876532110 0 00011111111 1235788999988776665554321111 111112356889
Q ss_pred cHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhHhHH
Q 005142 381 SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSF 457 (712)
Q Consensus 381 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~---~~i~~r~g~lff~~~~~~f~s~~~~p~~ 457 (712)
+++.|+..|++|++++++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||.+.+.+|.++..++.+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997543 3456778899999999999888899999
Q ss_pred HHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 005142 458 VEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL 537 (712)
Q Consensus 458 ~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl 537 (712)
+.+|+ ||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++
T Consensus 593 ~~~r~------vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l 666 (1470)
T PLN03140 593 IQRLP------VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGI 666 (1470)
T ss_pred Hhccc------hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCC-CCCCC
Q 005142 538 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS-PDLPK 616 (712)
Q Consensus 538 ~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~-~~~~~ 616 (712)
++++++++|++.+|+.+++++++++++|+||++++++||+ +|+ |++|+||++||+||++.|||.+..+.+.. .+.+.
T Consensus 667 ~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~ 744 (1470)
T PLN03140 667 FRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNST 744 (1470)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCccccCcccCCCCc
Confidence 9999999999999999999999999999999999999996 465 49999999999999999999887764321 23356
Q ss_pred ccHHHHHhhhcCcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005142 617 IPGEYVLENVFQIDVR-RSKWIDLSVIFSMIISYRIIFFVMIKISE 661 (712)
Q Consensus 617 ~~G~~~L~~~~~~~~~-~~~w~~~~iL~~~~~~f~~l~~~~L~~~~ 661 (712)
..|+++|+. +|++.+ .+.|+|+++|++|+++|+++++++|++..
T Consensus 745 ~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 745 RLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999976 899654 46899999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.7e-98 Score=928.31 Aligned_cols=576 Identities=27% Similarity=0.414 Sum_probs=500.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-Cc
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SF 127 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~ 127 (712)
...++|+||++++..+ ++.+.+|+|||++++|||++||+||||||||||||+|+|+.+++...+|+|.+||++... .+
T Consensus 757 ~~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred CceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 3468999999998532 234689999999999999999999999999999999999987543458999999998632 24
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+. ..+|||||||||+||+
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGV 914 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHH
Confidence 679999999999999999999999998887665667777889999999999999999999863 3489999999999999
Q ss_pred HHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC-eEEEecCh----hh
Q 005142 208 EILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SA 281 (712)
Q Consensus 208 aL~~~P~-llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G-~iv~~G~~----~~ 281 (712)
||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ ++
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccch
Confidence 9999997 999999999999999999999999999889999999999987788999999999987 99999997 56
Q ss_pred HHHHHHHcCC-CCCCCCCchhHHHHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHH
Q 005142 282 AFEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360 (712)
Q Consensus 282 ~~~~f~~~g~-~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 360 (712)
+.+||+..|+ +||+..|||||++++++.+... +..+++.+.|+.|...+...+
T Consensus 995 ~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHH
Confidence 8999999996 9999999999999988653110 001235677877776666555
Q ss_pred HHhhhhhccC---c---cccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHH
Q 005142 361 KVEGISKVKG---T---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA 434 (712)
Q Consensus 361 ~~~~~~~~~~---~---~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~ 434 (712)
.+++...... . ....+++.+||++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~ 1128 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4433221100 0 011245789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHhhcccCcceeE-EeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 005142 435 RGSCASFVFGFVTFMSIGGFPSFVEDMKFCNIFQVF-QRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL 513 (712)
Q Consensus 435 r~g~lff~~~~~~f~s~~~~p~~~~er~f~~~~~vf-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl 513 (712)
|.|++|+++.+..++....+|.|+.+|. +| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||
T Consensus 1129 ~~g~~f~~~~~~~~~~~~~~~~f~~~r~------~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl 1202 (1394)
T TIGR00956 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRD------LYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGF 1202 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccc
Confidence 9999999988887776677899988888 75 8999999999999999999999999999999999999999999
Q ss_pred cCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccce
Q 005142 514 HPGFIH-------YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 586 (712)
Q Consensus 514 ~~~~~~-------f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~y 586 (712)
++++.. |++|++++++..++++++|+++++++|+..+|..+++++.+++++|+||++++++||. +|+| ++|
T Consensus 1203 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~ 1280 (1394)
T TIGR00956 1203 YWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYR 1280 (1394)
T ss_pred cCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHh
Confidence 988765 9999999999999999999999999999999999999999999999999999999997 6774 999
Q ss_pred ecHHHHHHHHHHHHhhCCCccCCCCC-------------------------------C---CC----CccHHHHHhhhcC
Q 005142 587 LSFHYWALQGQYQNDLKGLWFDNQSP-------------------------------D---LP----KIPGEYVLENVFQ 628 (712)
Q Consensus 587 iS~~~Ya~e~l~~nef~g~~f~~~~~-------------------------------~---~~----~~~G~~~L~~~~~ 628 (712)
+||++|+++|++.|||.|.++.|... + .| +.+|+++|+. ++
T Consensus 1281 ~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~ 1359 (1394)
T TIGR00956 1281 CSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-IS 1359 (1394)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cC
Confidence 99999999999999999998776431 0 12 4599999998 88
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005142 629 IDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 663 (712)
Q Consensus 629 ~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~ 663 (712)
++.+ +.|+|+++++++++++ ++++++|+++.|+
T Consensus 1360 ~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1360 SKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred Cccc-ccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 8764 5999999999999999 7777877766543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-96 Score=863.21 Aligned_cols=577 Identities=28% Similarity=0.430 Sum_probs=506.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-C-CcC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFG 128 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-~-~~~ 128 (712)
...|+|+.+++..+ ++++++|+|||+.++||.++||||+||||||||||+||||...+ .++|+|++||.+.. . ..|
T Consensus 787 V~~w~dl~~~~~~q-G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQ-GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred eEEEEeCCcccccc-ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhcc
Confidence 35677777776543 46789999999999999999999999999999999999998654 57999999999854 2 357
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.+|||.|+|.|.+.+||||.|.|+|.+|+|..++.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999977 9999999999999999
Q ss_pred HhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe-CCeEEEecChhh----H
Q 005142 209 ILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----A 282 (712)
Q Consensus 209 L~~~P-~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~-~G~iv~~G~~~~----~ 282 (712)
|+.|| .||||||||||||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|+ +|++||+|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 89999999999999999999999999999999999999999999999999999997 789999999755 5
Q ss_pred HHHHHHcC-CCCCCCCCchhHHHHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHHH
Q 005142 283 FEFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (712)
Q Consensus 283 ~~~f~~~g-~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~ 361 (712)
++||++.| .+||+..|||||+++++....+. +...++.+.|+.|++++++.+.
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHH
Confidence 67999986 89999999999999998664211 0011578999999999999998
Q ss_pred HhhhhhccCc-c---ccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHH
Q 005142 362 VEGISKVKGT-V---LDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGS 437 (712)
Q Consensus 362 ~~~~~~~~~~-~---~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g 437 (712)
++++...... . ..++++.+|+|.|++.+++|++..+||+|.|+++|++..++.||++|+.||++|++.++++|..+
T Consensus 1078 v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~ 1157 (1391)
T KOG0065|consen 1078 VKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMG 1157 (1391)
T ss_pred HHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHH
Confidence 8877643222 1 12466889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhH-hHHHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCC
Q 005142 438 CASFVFGFVTFMSIGGF-PSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPG 516 (712)
Q Consensus 438 ~lff~~~~~~f~s~~~~-p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~ 516 (712)
++|..+.+..-...+.. |....||. +++||+.+|+|++.+|++|.+++|+|+.++.+.+|.+|+|||+|+..+
T Consensus 1158 a~yma~v~~~~~~~~~~~~~v~~e~~------y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~ 1231 (1391)
T KOG0065|consen 1158 AAYMATVFSGPNNNQLQQPAVATERL------YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWT 1231 (1391)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhhhhh------heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhh
Confidence 99988877766544444 44556777 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHH
Q 005142 517 FIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQG 596 (712)
Q Consensus 517 ~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~ 596 (712)
+.+|++|++.++++.++.+++|+++.+++||.++|.++.+.++.++.+|||++++++.||+ +|+| |+|+||+.|.+++
T Consensus 1232 a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~g 1309 (1391)
T KOG0065|consen 1232 ASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEG 1309 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 6885 9999999999999
Q ss_pred HHHHhhCCCccCCCCCCC------CCccHHHHHhhhcC----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005142 597 QYQNDLKGLWFDNQSPDL------PKIPGEYVLENVFQ----IDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 665 (712)
Q Consensus 597 l~~nef~g~~f~~~~~~~------~~~~G~~~L~~~~~----~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~~~ 665 (712)
++..++++.+-.|...+. +-.+..++++.++| +..+.. -....+.+.+.+++.+++.+.+++.++-+.
T Consensus 1310 li~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~-a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1310 LISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL-ATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc-ceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 999999998887765431 22455678888788 533221 122345566778888888888888776554
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-91 Score=817.11 Aligned_cols=574 Identities=26% Similarity=0.459 Sum_probs=505.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEecCCCCCCCCCHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
..+|+|+|+.++||+++.++||+||||||||++|+|.++......|+|.+||.+.+. .++.++|++|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987766668899999987543 257899999999999999999
Q ss_pred HHHHHHhhhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005142 147 ETISYSARLRLPDK----MPWSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (712)
Q Consensus 147 E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP 221 (712)
|+|.|+++++.+.. .++.++.+ .++.+++.+||++|+||+|||...||+||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999988732 33344332 67789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCch
Q 005142 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~ 300 (712)
|+|||+.++.++++.|+++++ .+.|+++++|||+++++++||+|++|++|+++|+||.+++++||+++|+.||+++++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999998 6899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccchhhHHHhhhccccccccCCCCcchhhchHHHHHHHHHHHhhchhhHHHHHHHhhhhhcc---CccccCCC
Q 005142 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK---GTVLDAGG 377 (712)
Q Consensus 301 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~ 377 (712)
||+.++.+.. ++ ...+.....+....+ ..++.+.|.+++.++....+++...... ......++
T Consensus 368 DfLt~vts~k-~~---------~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKK-DQ---------EQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCc-cc---------cccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 9988877621 11 011111222221112 2357889999998888777665433221 12233577
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCC-CChhhHHHHHHHHHHHHHHHHHHHHhhHhH
Q 005142 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (712)
Q Consensus 378 ~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l~-~~~~~i~~r~g~lff~~~~~~f~s~~~~p~ 456 (712)
+..++|.|+++|++|.|..+.||..++..+.++.+++|+++|++|++.+ .+..+.+.|.|++||.+.+.+|.++..++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH
Q 005142 457 FVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 536 (712)
Q Consensus 457 ~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s 536 (712)
.++.|| ||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||+++++++++.+|+.+
T Consensus 514 ~~~~~p------v~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 514 TFQRLP------VFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHhhcc------hHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCC-----
Q 005142 537 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS----- 611 (712)
Q Consensus 537 l~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~----- 611 (712)
+++++++++++...|+.+|++.+.+..+++||+++.++||+ ||+ |++||||+.||+|+++.|||+|+.++|..
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y 665 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAY 665 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999996 344 59999999999999999999999999861
Q ss_pred -------C---------CCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005142 612 -------P---------DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 665 (712)
Q Consensus 612 -------~---------~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~~~ 665 (712)
. |..++.|.++++..|+++. ++.|+|+||++|+.++|.++..+++-+.+..+.
T Consensus 666 ~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~-~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~ 734 (1391)
T KOG0065|consen 666 DNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEY-KWYWRNFGILLGFTVFFNFVFLIALEYLKPLKK 734 (1391)
T ss_pred cccccccccchhhccccCceEEeccccccccccccc-ceeEeehhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 1 2235567777766666664 469999999999999999999997776664443
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=404.32 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=197.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------ 124 (712)
.|+++||+++| +...+|+|||+++++||+++|+|||||||||||+||.|+..++ +|+|.++|++..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 48999999999 6788999999999999999999999999999999999999886 999999997542
Q ss_pred CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..++.+|+|+|+..|||++||.||+.++...- ..+++++.++++.++|+.+||.+.+|. +|.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999985432 246788889999999999999998887 67889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999995 688999999999999999999988754
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-48 Score=398.30 Aligned_cols=220 Identities=27% Similarity=0.387 Sum_probs=199.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++|+++.+..+.++...+|+|||++|++||+++|+|.||||||||+++|.++..|+ +|+|.+||+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHH
Confidence 7899999998643333467999999999999999999999999999999999999986 9999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.||+++|+..|+...||.||+.|..++. ++++++++++|.++|+.+||++.+|. +|.+|||||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRV 150 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRV 150 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHH
Confidence 2467999999999999999999999998775 36789999999999999999988876 6778999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|+||++|||||+|||.+...|+++|+++.+ .|.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999976 699999999995 678899999999999999999998876
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 230 F 230 (339)
T COG1135 230 F 230 (339)
T ss_pred h
Confidence 4
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=386.85 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=198.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+|+.| ..+.+++|+|++|++||+++++|||||||||+||+|.++..|+ +|+|++||+++.. .
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHH
Confidence 7899999998 4688999999999999999999999999999999999999986 9999999998643 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqRvs 204 (712)
++.+|||-|.-.|||++||.||+.+...+. ..++++.+++++++++.+||+. .+++ +|++|||||+|||.
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVG 145 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVG 145 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHH
Confidence 478999999999999999999999987664 3567888999999999999974 4444 78999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||||+.+|+++++|||+++|||.++.++-+.++++.+ -|+|||++|||. +|.++++|||++|++|+++..+++++++
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999986 599999999995 7999999999999999999999999876
Q ss_pred H
Q 005142 284 E 284 (712)
Q Consensus 284 ~ 284 (712)
.
T Consensus 225 ~ 225 (309)
T COG1125 225 A 225 (309)
T ss_pred h
Confidence 4
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-47 Score=381.81 Aligned_cols=220 Identities=33% Similarity=0.463 Sum_probs=199.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...+++++|++++ +++.||+|||++|++||+++|||||||||||||++|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4569999999998 6789999999999999999999999999999999999999996 9999999987421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGe 199 (712)
.++++|+++|...||..+||+||+.|..+-+ ...+++..++.+..-|+.+||... ++. +|.+|||||
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchH
Confidence 1367999999999999999999999976543 346788888999999999999765 443 788999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
+||++||||++.||+|+|+||||+||||.++..+-++++++.+ -|.|++++|||. ++++.+||++++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999999987 599999999996 67999999999999999999999
Q ss_pred hhhHHH
Q 005142 279 TSAAFE 284 (712)
Q Consensus 279 ~~~~~~ 284 (712)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=387.17 Aligned_cols=204 Identities=32% Similarity=0.420 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.++++++++.| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999998 3478999999999999999999999999999999999999986 999999999875556789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+||+|++.|+|.+||+||+.++...+. .++++.++++++.|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 999999999999999999999987642 4567777899999999999998887 67899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
.+|++|+||||+++||+.++..+.+.|.++.+ .++||+++|||. +|+..++|||++|+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999875 689999999996 7899999999999984
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.7e-47 Score=404.76 Aligned_cols=221 Identities=37% Similarity=0.515 Sum_probs=198.2
Q ss_pred EEEEEeEEEEEEccCCc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
.++++||++.+ + .+.+|+||||++++|+++||+||||||||||+|+|+|+..|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999998 4 578999999999999999999999999999999999999985 9999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.++.+||++|++.+++.+||+|+|.|.+.++... ....+++++++++.+||.+..+++ +++||+|||||++|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHH
Confidence 2467999999999999999999999999987532 245567899999999999855554 46799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
|+||+++|++|||||||+|||+.++..+.+.|++++++| +||+++||++ +++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999977 8999999996 68999999999999999999999988766
Q ss_pred HHHH
Q 005142 285 FFAQ 288 (712)
Q Consensus 285 ~f~~ 288 (712)
.+..
T Consensus 227 ~~~~ 230 (293)
T COG1131 227 KFGG 230 (293)
T ss_pred hhcc
Confidence 5543
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-47 Score=383.60 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=182.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------- 124 (712)
++++||++.+..+... ..+|++||++|++||++||+|||||||||||++|+|+..|+ +|+|.++|++..
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 5689999988643322 67999999999999999999999999999999999999885 999999997642
Q ss_pred --CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 125 --~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
.+++.+|||+|+..|+|.+||.||+.+.+.+.. .+..+.+++++++++.+||.+..+.. +|.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~----~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC----CchhcCHHHHHH
Confidence 134679999999999999999999998765542 22335667888999999998766521 567899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|+|||||+.+|+++++||||.+||+.++..|+++|++++++ |+|||++|||| ++...|||++.|++|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999874 99999999996 58899999999999994
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.3e-47 Score=393.34 Aligned_cols=219 Identities=35% Similarity=0.443 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58999999999 5688999999999999999999999999999999999999986 8999999997532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||||.......+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+ .+|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHH
Confidence 2468999999998888999999999985432221 1123444568999999999999999865 479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||||+++|++|+||||||.||...+.++++.++++++ +|+|||+++||+ +.+.++||++++|++|+++++|++++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999995 699999999997 5789999999999999999999998765
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-47 Score=384.97 Aligned_cols=219 Identities=30% Similarity=0.442 Sum_probs=189.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--c
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--~ 127 (712)
..++++||++.|. .+++|+|||+++++|++++|+||||||||||+|+|.|+++|. +|+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3689999999993 226999999999999999999999999999999999999986 99999999875433 3
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 128 ~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++|||||.. .-|| +||+|.+..+...+... ....++.++.+++.|+.+|+.+.+|..+| +|||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHH
Confidence 6799999964 3355 59999999874333211 11123347889999999999999999887 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+ ..+.++||+|++| ++++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 999999999999999999999999999999999999999999999999997 5799999999999 57788999998765
Q ss_pred H
Q 005142 284 E 284 (712)
Q Consensus 284 ~ 284 (712)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 4
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=399.08 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=199.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|||+..|+ +|+|.++|++.+. ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999998 2222999999999999999999999999999999999999986 9999999998543 34
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
|.+|+|+|+..|||++||+||+.|+.+.+ ..++++.+++|+++.+.++|++..|+ ++++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHH
Confidence 78999999999999999999999998765 45688899999999999999999988 46789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+++|++++||||+|+||...+..+...|+++.+ .|.|+|.+|||. .|+..++|+|.+|++|++...|++.++-+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999976 589999999995 68999999999999999999999988753
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=402.33 Aligned_cols=217 Identities=27% Similarity=0.444 Sum_probs=199.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~ 126 (712)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 468999999999 4688999999999999999999999999999999999999986 9999999998642 3
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.|.+|+|+|+..|||+|||+||+.|+.+.+ ....+++.+++|+++++.++|++.+++ ++.+|||||+|||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234467788999999999999998776 5678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|||+.+|++|+||||.|+||..-+.++...|+++.+ .|.|.|++|||. .|...++|||.+|++|++...|+++++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999999976 699999999995 789999999999999999999999876
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=384.67 Aligned_cols=220 Identities=29% Similarity=0.452 Sum_probs=199.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK-- 124 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~---~~~-- 124 (712)
+++.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|||+..|+ +|.|.+||+ +.+
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 357888888887 5678999999999999999999999999999999999999996 999999999 432
Q ss_pred -CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
...++||||+|+..+|+.|||.||+.|+.+.+ ....++.+.+.++.++|+.+.|++.++. +|.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 23478999999999999999999999998776 2334567888999999999999988776 7789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
++||||+.+|++|+||||+++||..-+.++-+.|+++.++ |.|++++|||+ +|++++||+|++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999874 99999999996 789999999999999999999999987
Q ss_pred HH
Q 005142 283 FE 284 (712)
Q Consensus 283 ~~ 284 (712)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 54
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-46 Score=368.91 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=194.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++||++.|+ +.+++|+|||+.|++||++||+|||||||||||++|.|+.+++ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4689999999985 4578999999999999999999999999999999999998886 9999999975321
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (712)
.++.+||++|++.|.+.+||.+|+..+..-+.+. +...++.+..+-+.|+++|+.+.+-++.+ .||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 1467999999999999999999999875322211 12234455677889999999988877554 699
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
|||+|||+|||+|+++|++++.|||+++|||.++.+||+.|+++++ +|.|||++.||. +.+.++|||++-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999986 799999999995 67899999999999999999
Q ss_pred ecChhhHHH
Q 005142 276 FGETSAAFE 284 (712)
Q Consensus 276 ~G~~~~~~~ 284 (712)
.|+++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-46 Score=360.48 Aligned_cols=217 Identities=31% Similarity=0.429 Sum_probs=198.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----CCc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----LSF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~----~~~ 127 (712)
|++++|+++|. ...++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+.. ..+
T Consensus 2 l~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHh
Confidence 67889999883 2344899999999999999999999999999999999999996 999999998742 225
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.+|.++.+..++..||++|||.|.+++. .+...+.+++.+++.+.++|.++.|+++| ++|.|+||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHH
Confidence 78999998888999999999999999875 46678888999999999999999999887 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+++|++++|||||||||..+...+.+.+++++++|++||++||.. +++.++||+|++|++|++++.|+.++...
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999995 78999999999999999999999987654
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.7e-44 Score=386.12 Aligned_cols=217 Identities=30% Similarity=0.432 Sum_probs=194.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~ 126 (712)
.++++||++.+ +++.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 8999999987532 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
++.+||++|++.+++.+||+||+.+.+.++ ..+..+..++++++++.++|.+..++.+ ++||||||||++||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 367999999999999999999999876543 2334555667889999999998888865 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+||+++|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++.+
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999988899999999996 68899999999999999999999987754
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-44 Score=392.87 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=195.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 8999999987532 24
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++||+|+..+||.+||+||+.|+...+ ..++++.+++++++++.++|++..|+ ++++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 23456677889999999999988876 45689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|+++||||||++||..++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|++++.|+++++.+
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999774 89999999996 68999999999999999999999987653
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-44 Score=389.57 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=192.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.|..+ +..+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998421 12357999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.++|++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|. ++.+|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 1357999999999999999999999876532 23456667789999999999987776 4568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999874 99999999996 678899999999999999999998876
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 3
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=358.09 Aligned_cols=221 Identities=27% Similarity=0.404 Sum_probs=192.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~-- 125 (712)
..++++||++.| +++.+|+|||+.|++++++|+||||||||||||+++..... ++.+.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 57889999999999999999999999999999999998753 456789999999997532
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGe 199 (712)
.++++|.|+|.+.-|| +|++||+.|+.++.. ...++.++.|+..|+...|.+. .|.+ . ....+|||||
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~-~sa~~LSGGQ 154 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-H-KSALGLSGGQ 154 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-h-CCccCCChhH
Confidence 2478999999999999 799999999988753 2236777889999999888643 3332 2 2456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
+||++|||+|+.+|+||+||||||+|||.+..+|-+++.+|++ ..|||++||.+ ..+.+..|+...+..|+++++|++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCH
Confidence 9999999999999999999999999999999999999999984 69999999996 678999999999999999999999
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
+++.
T Consensus 233 ~~iF 236 (253)
T COG1117 233 DKIF 236 (253)
T ss_pred Hhhh
Confidence 8763
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=392.58 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.+. +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2367999999999999999999999999999999999999885 9999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++||+|++.+||.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986542 234566677899999999998877764 5689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||+ .++.+++|++++|++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 99999999996 6899999999999999999999998764
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.6e-45 Score=351.29 Aligned_cols=211 Identities=29% Similarity=0.392 Sum_probs=191.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------- 124 (712)
++|+|+++.|. ..+.+|+|||+.+++||++-|+||||||||||||+|.+...|+ .|+|++||++..
T Consensus 2 I~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeeccccccccc
Confidence 78999999884 3477999999999999999999999999999999999999886 999999998742
Q ss_pred -CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+++||.|+||..|++..||.||+.|+.+.. +.+.++.+++|.++|+.+||.+.++. .|.+|||||+|||
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRv 146 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRV 146 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHH
Confidence 12578999999999999999999999997764 45678889999999999999988776 5678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.||++.||| ...+..+-.+++.|++|+++....
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999 466777889999999999987543
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=390.51 Aligned_cols=216 Identities=25% Similarity=0.453 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++||+|+..+||.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++ +++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 23456677889999999999887766 45689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ +++.+++|+|++|++|+++..|+++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 6899999999999999999999998764
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-44 Score=370.60 Aligned_cols=215 Identities=31% Similarity=0.472 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.++||+|++.+++.+||+||+.+...... ..+.++..+++.++++.+||.+..++.+ +.|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13569999999999999999999998754221 1234455677889999999987766644 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 578889999999999999999987754
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.5e-44 Score=389.33 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~--G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 48899999998 3457999999999999999999999999999999999999886 7 999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++||+|+..+||.+||+||+.|+...+ ..++++.+++++++++.+||++..|+. +++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999986543 244566677899999999999888774 46799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||+ +++..++|+|++|++|+++..|+++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999996 6889999999999999999999998764
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.8e-44 Score=388.45 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 58899999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+.++||+|++.++|.+||+||+.|+...... ...++++.+++++++++.++|++..|+. +++|||||||||+||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalA 148 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALA 148 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 5799999999999999999999998653211 1234556677899999999998877764 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|+|++|++|++++.|+++++.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999875 89999999996 6889999999999999999999998764
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.8e-44 Score=385.15 Aligned_cols=219 Identities=29% Similarity=0.417 Sum_probs=194.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++||++.+ +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999998 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.+ ++||||||||++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHH
Confidence 2357999999999999999999999865543 1234445567888999999998888865 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+||+++|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++++..+
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999988899999999996 68899999999999999999999988754
No 35
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=359.72 Aligned_cols=221 Identities=28% Similarity=0.369 Sum_probs=189.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++||++.+..++. ...+|+|||+++++||.++|+|+||||||||.++|+|+.+|+ +|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 36899999999953221 125999999999999999999999999999999999999986 9999999976422
Q ss_pred --CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.+-+|+||+ .+.|..||++.|.-.... .+.++. ++++.++++.+||....- ++++.+|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHHH
Confidence 356789999997 578999999999887654 233333 344899999999975422 2377899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|++|||||+.+|++||||||||+||+..+.+|+++|.++++ .|.|.|+++||. ..+..+||||++|++|++++.++++
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999999999987 589999999995 6889999999999999999999998
Q ss_pred hHHH
Q 005142 281 AAFE 284 (712)
Q Consensus 281 ~~~~ 284 (712)
++..
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8754
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.6e-44 Score=389.28 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=194.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 12 SPLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPA 83 (375)
T ss_pred CceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 3459999999998 3467999999999999999999999999999999999999885 8999999997532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++||+|++.+||.+||+||+.|+.+.+ ..+..+.+++++++++.+||++..++. +.+|||||||||+|
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaL 155 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAI 155 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999986533 234556667889999999999888774 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||||+.+|++|||||||+|||..++..+.+.|+++.+ .|.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999987 499999999996 6899999999999999999999988764
No 37
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-44 Score=407.06 Aligned_cols=250 Identities=30% Similarity=0.447 Sum_probs=211.5
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 005142 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (712)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~ 80 (712)
|++..|++|++|+++.+|..+..+ -..| ....-.++|+|+++.|+.. ++.+||+|+||+++
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G--~~~p---------------~~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTG--TLAP---------------DHLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCC--cccc---------------ccccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 789999999999999999976421 1111 0123469999999999654 45789999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
|||++||+||||+||||+.++|-.++.|. +|+|++||+|++. .+++||+|.|||.||.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999996 9999999998642 24789999999999998 99999999864
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005142 156 RLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 156 ~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~ 230 (712)
+.+.++.. +.+.+.+ .++++..||.||+ +...||||||||++|||||++||.||||||.||+||+++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 23344333 3334444 3678899999998 4567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
..|-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|.-+|+.+
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998865 499999999964 578999999999999999998887654
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=362.11 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999988 3467999999999999999999999999999999999998885 8999999986431 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||+||+.+....+ ....++..++++++++.++|++..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875442 1234445567889999999987777654 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999875 89999999996 57889999999999999999988765
No 39
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=360.80 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=185.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
|+++||++.+... ...+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 4689999988311 01157999999999999999999999999999999999998875 8999999987644446799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
||+|++.+++.+||+||+.+....+ ....++..+.++++++.+||.+..++.+ +.||||||||++||++|+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233444567889999999987766644 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe--CCeEEEecChh
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~--~G~iv~~G~~~ 280 (712)
+|+++||||||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 589999999996 56889999999999 79999988764
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-44 Score=364.93 Aligned_cols=218 Identities=30% Similarity=0.432 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------ 124 (712)
.+.++|+++.+.. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5789999999842 268999999999999999999999999999999999999986 899999998743
Q ss_pred CCcCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 125 LSFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 125 ~~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..++.+|||+|++ ..+-.-||.|.+.|+.... ..+.++.+++++++++.+||.+..++ .+..|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeH
Confidence 2357899999996 2334449999999997543 45677889999999999999988776 5678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||. +.+.+++|++++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999986 79999999995 789999999999999999999998765
Q ss_pred HH
Q 005142 283 FE 284 (712)
Q Consensus 283 ~~ 284 (712)
.+
T Consensus 227 ~~ 228 (235)
T COG1122 227 FN 228 (235)
T ss_pred hh
Confidence 54
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=360.06 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=181.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTY-----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEe-----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 4688999988 2367999999999999999999999999999999999999875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+||+||+.+..... .....+.+++++++++.++|.+..++.+ ..||||||||++||++
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1233445567889999999987777644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999986 489999999996 5788999999999999998765
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=386.05 Aligned_cols=217 Identities=27% Similarity=0.396 Sum_probs=194.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~ 126 (712)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 359999999988 3457999999999999999999999999999999999999886 8999999987532 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.+|||+|++.+||.+||.||+.|+.+.+ ..++++.++++.++++.++|.+..++ ++++|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 467999999999999999999999986543 23456667889999999999887776 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999876 589999999996 6889999999999999999999998764
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.5e-43 Score=377.07 Aligned_cols=218 Identities=29% Similarity=0.398 Sum_probs=191.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 358999999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.++.++|++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.+ +.||||||||++|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 1356999999999999999999998755432 1234444567788999999988777755 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
|++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++.+
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 57889999999999999999999987654
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.8e-43 Score=364.47 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRF-----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEE-----CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 4678999988 2356999999999999999999999999999999999999875 8999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
....++|++|++.+++.+||+||+.+......... ....+..++++++++.+||++..++. ++.||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHH
Confidence 12459999999999999999999998754321110 01334456788999999998776664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987889999999996 57889999999999999999998
Q ss_pred hhhH
Q 005142 279 TSAA 282 (712)
Q Consensus 279 ~~~~ 282 (712)
+++.
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 8764
No 45
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-43 Score=363.99 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccc
Confidence 58899999998 2367999999999999999999999999999999999998875 8999999987432 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++. +..||||||||++||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 148 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVALA 148 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 5699999999999999999999987543211 0012334456788899999998766664 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999874 89999999996 578899999999999999999988764
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=385.68 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48999999998 3467999999999999999999999999999999999999885 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 223455667899999999998877764 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ +++.++||++++|++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 6789999999999999999999998764
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-43 Score=362.35 Aligned_cols=214 Identities=28% Similarity=0.455 Sum_probs=186.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999988 3457999999999999999999999999999999999999885 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++. ++.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHH
Confidence 1245999999999999999999999865432 122344556788999999998777664 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+++|++++|++|++++.|+.++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999988899999999996 578999999999999999999987754
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.8e-43 Score=359.72 Aligned_cols=207 Identities=27% Similarity=0.384 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++++.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999998831 1246999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+||.+..++. +.+||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1246999999999999999999999875532 123344556788999999998777664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999996 578889999999999974
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-43 Score=361.29 Aligned_cols=218 Identities=27% Similarity=0.401 Sum_probs=187.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+..+ .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 6889999988311 01137999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.++|.+..++. +..||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999875432 123444556788999999998777664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 578889999999999999999987754
No 50
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-43 Score=371.85 Aligned_cols=232 Identities=26% Similarity=0.387 Sum_probs=194.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999998421111246999999999999999999999999999999999999886 8999999987521
Q ss_pred ---CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHH
Q 005142 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGe 199 (712)
.++.++||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 135699999986 5665 59999999876432 234556677889999999996 34554 456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987899999999996 578899999999999999999999
Q ss_pred hhHH---HHHHHcCCCCCCC
Q 005142 280 SAAF---EFFAQAGFPCPAL 296 (712)
Q Consensus 280 ~~~~---~~f~~~g~~~p~~ 296 (712)
++.. +.+...|+.+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHHcCHHHHHHcCCCCChH
Confidence 8864 3445567766543
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=379.92 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=190.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+..+ +..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998311 11367999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.++||+|++.+++.+||+||+.+..... ..+.++.++++.++++.+||.+..++. ++.|||||||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999876543 233455567889999999998777764 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999764 89999999996 578899999999999999999998776
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.1e-43 Score=355.54 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRF-----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEE-----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 4689999988 3357999999999999999999999999999999999998875 8999999987532 234
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||++||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 1234455567888999999987777644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 5788899999999999999876
No 53
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-43 Score=337.99 Aligned_cols=213 Identities=28% Similarity=0.403 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~---~~~~ 128 (712)
+..+++++.|. . .=-..++++++||++||+||||||||||||+|+|...|. +|+|++||++.. ...+
T Consensus 2 l~L~~V~~~y~-----~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYG-----H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeC-----c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 45667777762 1 223578899999999999999999999999999999886 999999999742 2346
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
-++.++|+.+||..|||.+|+.++..-.+. -.++.+++++.++..+||..+.++. +.+|||||||||++||.
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~Lk---L~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLK---LNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccc---cCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHH
Confidence 699999999999999999999988643221 2355667899999999999998875 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+++-+|++||||+|.||+.-+.++..++.++++ ++.|++++||+| +++.+++|+++++.+|+|.+.|++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999986 689999999998 5799999999999999999999987654
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-43 Score=354.82 Aligned_cols=209 Identities=29% Similarity=0.505 Sum_probs=182.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~~ 130 (712)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999988 2457999999999999999999999999999999999998875 8999999986532 23569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+|++|++.+++.+||+||+.+....+ ..+..+..+.++++++.+||++..++. +++||||||||++||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875443 123344556788999999998777664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5678899999999999998764
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=368.29 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+....+..+.+|+|||+++++||++||+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999988421111257999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChHHH
Q 005142 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGer 200 (712)
..+.+|||+|++. .+...||+||+.+..... ..+.++..++++++++.+||. +..|+ .++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1357999999963 333469999999875432 234566667889999999996 45555 4568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999874 89999999996 578889999999999999999999
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8764
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-43 Score=361.16 Aligned_cols=218 Identities=30% Similarity=0.425 Sum_probs=183.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++||++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889998872 1257999999999999999999999999999999999999875 8999999987431
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC---C--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL---P--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++.+||+||+.+...... . ......+..+++.++++.++|.+..++. +.+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12469999999999999999999987542110 0 0111223446788899999998766664 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999986 489999999996 5788899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
++++.
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 98765
No 57
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-42 Score=371.78 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=191.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~ 126 (712)
.++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 48899999998 3467999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
++.+||++|++.+++.+||.||+.+.+.+. ..+.++..++++++++.+||.+..++.+ +.||||||||++||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999876553 2234455667889999999998887755 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++...
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999996 67999999999999999999999988654
No 58
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.7e-43 Score=356.79 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999987 2357999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 12469999999999999999999998754321 122345567778887 576666654 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+.++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987889999999996 578899999999999999999987764
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.6e-43 Score=355.63 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+.. ..+++|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468899998831 1267999999999999999999999999999999999999875 9999999987532 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.+ ..||||||||++||+
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875433 1233444567889999999987777644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999976 59999999997 567889999999999999999987653
No 60
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.5e-43 Score=358.89 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecCC-
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~i~G~~~~~- 125 (712)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999987 3357999999999999999999999999999999999998 664 8999999987421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
..+.++|++|++.++ .+||+||+.+...... .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 135699999999888 7899999998754321 11222345678889999999876665420 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578889999999999999999987
Q ss_pred hh
Q 005142 280 SA 281 (712)
Q Consensus 280 ~~ 281 (712)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 64
No 61
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-43 Score=385.90 Aligned_cols=248 Identities=31% Similarity=0.406 Sum_probs=205.4
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 005142 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (712)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~ 80 (712)
|++.+|++.+..++++++....- .++ .......++.++.+||++.++ +++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~-------------~~~--~~~~~~~~~ei~~~~l~~~y~----~g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGS-------------GEK--AEVANEPPIEISLENLSFRYP----DGKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCC-------------ccc--cccccCCCceeeecceEEecC----CCCcccCCceeEec
Confidence 57889999999999876663320 111 112334567788889999984 33489999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
+|+.+||+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++++|+. |++||+.++..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~- 420 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP- 420 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-
Confidence 99999999999999999999999999985 9999999987532 24789999999999998 99999998732
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGL------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+++ .+.++++..|| ++..|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++
T Consensus 421 ----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 421 ----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred ----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 12333 34455555554 3567899987 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..|.+.|.+++++ +|+|++||++ ....-+|+|++|++|++++.|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 9999999996 3578899999999999999999987753
No 62
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.9e-43 Score=373.02 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=182.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEecCCCCCCCC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 143 (712)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... .++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 357999999999999999999999999999999999999886 8999999987532 135699999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
||+||+.+.+.++ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2234455667899999999988777755 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999988899999999996 68889999999999999999999987654
No 63
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-42 Score=357.94 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 6899999988 2367999999999999999999999999999999999998875 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..+.. ++.||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHH
Confidence 13469999999999999999999988642111 123444556788999999998766664 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 578889999999999999999988764
No 64
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.9e-42 Score=360.09 Aligned_cols=216 Identities=30% Similarity=0.410 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 48899999988 2357999999999999999999999999999999999998875 8999999986421
Q ss_pred --------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
..+.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..|+. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988543211 123344556788999999998766664 467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.+++|++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987899999999996 5788899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
++++.
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 88764
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-42 Score=354.09 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
++++|+++.+... .+.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6789999988321 11126999999999999999999999999999999999999885 8999999987532 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.||||||||++||+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 1234455678899999999987777644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999987899999999996 5788999999999999998754
No 66
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=367.23 Aligned_cols=220 Identities=25% Similarity=0.325 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+....+..+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999998422111256999999999999999999999999999999999999885 8999999987531
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
..+.++||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +..++ .++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCHH
Confidence 124699999986 4554 69999999875432 234555567889999999996 45565 45679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||+|++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999764 89999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
++++..
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988764
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.7e-43 Score=355.48 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+...+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999883210 1157999999999999999999999999999999999999875 8999999987431
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||.+..++. ++.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHH
Confidence 1246999999999999999999999876543 122334456788999999998776664 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++. .||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 589999999997 4554 9999999999974
No 68
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.6e-42 Score=372.55 Aligned_cols=225 Identities=26% Similarity=0.386 Sum_probs=192.1
Q ss_pred eeEEEEEeEEEEEEccCC--------cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
...|+++||++.|....+ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. +|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECC
Confidence 346999999999853211 1357999999999999999999999999999999999999875 89999999
Q ss_pred EecCC--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 005142 121 HKTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (712)
Q Consensus 121 ~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~ 189 (712)
++... .++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~---- 157 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR---- 157 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC----
Confidence 87531 135799999997 688899999999987543211 234566677888999999994 34444
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 190 ~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
++++|||||||||+||+||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+ ..+.+++|+|++|
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 56789999999999999999999999999999999999999999999999874 89999999996 6788899999999
Q ss_pred eCCeEEEecChhhHH
Q 005142 269 SGGKTVYFGETSAAF 283 (712)
Q Consensus 269 ~~G~iv~~G~~~~~~ 283 (712)
++|++++.|+++++.
T Consensus 236 ~~G~ive~g~~~~i~ 250 (331)
T PRK15079 236 YLGHAVELGTYDEVY 250 (331)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988764
No 69
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=369.29 Aligned_cols=221 Identities=24% Similarity=0.339 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------ 124 (712)
.|+++||++.+..+......+|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48899999998432111246999999999999999999999999999999999999886 899999986431
Q ss_pred -----------------------CCcCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005142 125 -----------------------LSFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (712)
Q Consensus 125 -----------------------~~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (712)
...+.+|||+|++ ..+...||+||+.|+.... ..+.++..+++.++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 0134689999985 2333469999999875432 244566677899999999996
Q ss_pred -ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 005142 181 -DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (712)
Q Consensus 181 -~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~ 259 (712)
+..++ .+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.
T Consensus 156 ~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 156 ESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 55665 4567999999999999999999999999999999999999999999999988899999999995 5788
Q ss_pred hcCCeEEEEeCCeEEEecChhhHH
Q 005142 260 ELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 260 ~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++||+|++|++|++++.|++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999998764
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=358.48 Aligned_cols=215 Identities=27% Similarity=0.455 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYG----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeC----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHh
Confidence 46889999883 1156999999999999999999999999999999999999875 8999999987432 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.+.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+||.+ ..++ .++.||||||||++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~ 145 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRVG 145 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHH
Confidence 346899999999999999999999875432 1234455567889999999985 4555 45679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|++++.|++++.
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999874 89999999996 578899999999999999999987765
No 71
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=369.46 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=192.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++|+++.|.......+.+|+|||+++++||++||+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 469999999998422111246999999999999999999999999999999999999886 8999999976421
Q ss_pred -----------------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005142 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (712)
Q Consensus 126 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 185 (712)
.++.++||+|++ .+++. ||+||+.++.... ..+.++..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999986 56665 9999998875321 234555567788999999996 44554
Q ss_pred cccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 005142 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (712)
Q Consensus 186 ~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v 265 (712)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999987899999999996 5678999999
Q ss_pred EEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005142 266 YLLSGGKTVYFGETSAAFE---FFAQAGFPCP 294 (712)
Q Consensus 266 ~lL~~G~iv~~G~~~~~~~---~f~~~g~~~p 294 (712)
++|++|++++.|++++..+ .+...|+..|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999887642 3444455543
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-42 Score=360.23 Aligned_cols=218 Identities=30% Similarity=0.395 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899998872 1456999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC---C--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL---P--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++.+||+||+.+...... . ......+.++++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13569999999999999999999987532100 0 0011233456788899999998766664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999976 489999999996 5678899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87754
No 73
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-42 Score=362.47 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2356999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++. .++..||.||+.|..... .....+.+++++++++.+||.+..++. +..||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHHHH
Confidence 1356999999963 445679999999864422 233445556788999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999996 577899999999999999999998653
No 74
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=361.40 Aligned_cols=227 Identities=28% Similarity=0.391 Sum_probs=196.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEec------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKT------ 123 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~-~~~~~G~I~i~G~~~------ 123 (712)
|+++||++.+...++ ...+++||||++++||++||+|+|||||||+.++|.|+++ + ....+|+|.++|+++
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999965432 4679999999999999999999999999999999999997 4 445789999999853
Q ss_pred ---CCCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 124 ---KLSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 124 ---~~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
+.+.+.+++|+|++ .|.|.+||.+.+.-....+.... .+++.++++.++|+.+||++... +-+.++++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCc
Confidence 12346799999996 68899999999988876542211 45677888999999999986421 234589999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||. .-+.++||+|++|+.|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999987 699999999996 6799999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 237 ~~~~i~ 242 (316)
T COG0444 237 PVEEIF 242 (316)
T ss_pred CHHHHh
Confidence 998764
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-42 Score=380.42 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 58999999998 3478999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++.+++.+||+||+.++....... ....++.+++++++++.+||.+..++.+ ++||||||||+.
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1357999999999988999999999864321100 0112344567899999999988877754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||+|+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987889999999996 6888999999999999999999998753
No 76
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.1e-42 Score=361.68 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhh
Confidence 58999999988 3467999999999999999999999999999999999999875 8999999986431
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++.+||.||+.+...... ....++..+++.++++.+||.+..++. +..||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 151 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARR 151 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHH
Confidence 12469999999999999999999988643211 123344456788899999998877764 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 89999999996 57889999999999999999998876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 231 ~ 231 (269)
T PRK11831 231 L 231 (269)
T ss_pred H
Confidence 5
No 77
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.9e-43 Score=407.06 Aligned_cols=249 Identities=29% Similarity=0.367 Sum_probs=206.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+++.|-+|+.++++.+|+.+.-. .+ . ......-.++++|++++|.. .+..+|+|+|++|+|
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~----~~--------~----~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDK----TL--------I----HLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccc----cc--------c----cccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 57889999999999888754301 00 0 11123346999999999953 334799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+|+|+|++.|. +|+|++||.+.+. .++.+|||+||+.+|.. |++||+.++...
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~- 573 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPE- 573 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 9999999998532 25789999999999988 999999987432
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~-----~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
.+.++. .+.+++.+. .++...||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+..
T Consensus 574 ----~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 574 ----ATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 222222 222334343 467788999997 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.|.+.|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.+++.+
T Consensus 647 ~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 647 IILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999864 699999999974 689999999999999999999998775
No 78
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-42 Score=350.85 Aligned_cols=205 Identities=29% Similarity=0.464 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++|+++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999988 2367999999999999999999999999999999999999875 9999999986431 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+||+||+.+...... . .+++++++++.++|.+..++. ++.|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 69999999999999999999988754321 1 135678899999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999996 5778899999999999998765
No 79
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.7e-42 Score=375.39 Aligned_cols=205 Identities=23% Similarity=0.326 Sum_probs=183.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEecCC
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDD 137 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---------~~~~~~yv~Q~~ 137 (712)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++.. .++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3467999999999999999999999999999999999999885 9999999987532 135799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEE
Q 005142 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (712)
Q Consensus 138 ~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~lll 217 (712)
.+|+.+||+||+.+..... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999986543 23456667889999999999877776 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||||++||+.++..+.+.|+++.+ .|+|||++||+. +++.+++|+|++|++|+++..|++++..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999976 489999999996 6789999999999999999999988764
No 80
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=356.72 Aligned_cols=216 Identities=24% Similarity=0.460 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48899999988 2367999999999999999999999999999999999999875 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+||.||+.+..... .....++.+.+++++++.+||.+..++. ++.||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 1256999999999999999999998764332 1123344556788999999998766654 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999987899999999996 578899999999999999999988765
No 81
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=358.04 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++.......++
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 7899999988 2367999999999999999999999999999999999999875 8999999987643334689
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 123444556788999999998766664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe--CCeEEEecChh
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~--~G~iv~~G~~~ 280 (712)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999865 589999999996 57889999999998 59999887654
No 82
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=364.72 Aligned_cols=220 Identities=25% Similarity=0.388 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++||++.|..+....+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 58999999998422111256999999999999999999999999999999999999886 8999999987521
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
.++.+|||+|++ .+++ .||.||+.++.... ..+.++..++++++++.+||. +..++ .++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgG 149 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSGG 149 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHH
Confidence 135699999986 4665 49999999875432 234555667889999999996 55665 45679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976 589999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
++++..
T Consensus 229 ~~~~~~ 234 (286)
T PRK13646 229 SPKELF 234 (286)
T ss_pred CHHHHH
Confidence 988754
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=352.33 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||++.+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEG-SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCC-CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 48999999988421 11256999999999999999999999999999999999999875 99999999875311
Q ss_pred -----cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.+.++|++|++.+++.+||+||+.+..... ....++.++++.++++.+||.+..++. ++.|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 146999999999999999999999875432 123344556788999999998776664 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999997 45554 689999999999988864
No 84
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-42 Score=349.74 Aligned_cols=205 Identities=29% Similarity=0.405 Sum_probs=178.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 78999999883 2356999999999999999999999999999999999998875 8999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+||+||+.+..... ....++.+++++++++.++|.+..++. +..||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1256999999999999999999999875432 123344456788999999998766664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999987899999999996 57888999999999985
No 85
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.2e-42 Score=349.76 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=178.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999883 2257999999999999999999999999999999999998875 8999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||++..++. +++||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHH
Confidence 1246999999999999999999999875432 123444556788999999998776664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
+||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999996 577889999999999974
No 86
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9e-42 Score=352.12 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=184.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 6789999988 3467999999999999999999999999999999999999885 8999999986432 12
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+|++||+.+....+ ....++..+.+.++++.+||++..++.+ ..||||||||++||+
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999998888999999998765432 1233444567889999999987777644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||+++|++. ++. .+|++++|++|++++.|++++..
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 6899999999974 554 59999999999999999887654
No 87
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=355.03 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------ 124 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++..
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccc
Confidence 58899999988 3357999999999999999999999999999999999998875 899999998641
Q ss_pred -----CCcCcEEEEecCCCCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 125 -----LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 125 -----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
...+.++|++|++.+++.+||.||+.+.. ... .....+..+++.+.++.+||++..++. ++.||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G 145 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGG 145 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHH
Confidence 01246899999999999999999997532 221 123344456788999999998766664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.+++|++++|.+|++++.|+
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999999996 57788999999999999999998
Q ss_pred hhh
Q 005142 279 TSA 281 (712)
Q Consensus 279 ~~~ 281 (712)
.++
T Consensus 225 ~~~ 227 (242)
T PRK11124 225 ASC 227 (242)
T ss_pred HHH
Confidence 764
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-42 Score=349.20 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+ +.+.+|+|+|+++++| +++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 i~~~~~~~~~-----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRY-----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEE-----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 4689999988 2357999999999999 99999999999999999999999885 8999999976432 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||+||+.+..... ....++..+.++++++.+||.+..++.+ ..||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875543 1233444567889999999987777644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5678899999999999998765
No 89
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.8e-42 Score=357.09 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 38999999998 3467999999999999999999999999999999999999875 8999999986421
Q ss_pred -------------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 005142 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (712)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~ 191 (712)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+||.+.. +. .
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12469999999999999999999987542111 123445567788999999997653 44 4
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999987899999999996 5788899999999999
Q ss_pred eEEEecChhhH
Q 005142 272 KTVYFGETSAA 282 (712)
Q Consensus 272 ~iv~~G~~~~~ 282 (712)
++++.|+.++.
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999988764
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.3e-42 Score=354.42 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~---- 125 (712)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 6899999988 2356999999999999999999999999999999999998762 1128999999987531
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCChH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++ +|++||+.+....+. ..+.++..+.++++++.+||. +..++ .++.||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999998888 899999998754321 123445556788999999997 44454 45679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++|++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999774 8999999996 57889999999999999999998
Q ss_pred hhhH
Q 005142 279 TSAA 282 (712)
Q Consensus 279 ~~~~ 282 (712)
+++.
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 8765
No 91
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-42 Score=354.59 Aligned_cols=214 Identities=23% Similarity=0.364 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+||.||+.++.... ...+..+.++++++.+ ++.+..++ .++.||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHH
Confidence 1246999999999999999999998864321 1222344566777777 47655554 3467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999988899999999996 5789999999999999999999987663
No 92
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-42 Score=360.98 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 5899999999832 11246999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++ .+++..||+||+.+..... ..+.++..++++++++.+||++..+.. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 135699999997 4677789999999875432 234556667889999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|++++..
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999874 99999999996 455 589999999999999999988764
No 93
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-42 Score=401.31 Aligned_cols=247 Identities=25% Similarity=0.357 Sum_probs=195.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.++..+. .+ +.. ........++++|+++.+. +++.+|+|+|++++|
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~---~~----------~~~---~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ---QG----------EKE---LASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC---CC----------ccc---cCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 578899999999986553211 00 000 0000123599999997552 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|.+ |. +|+|.+||++.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 74 8999999987542 24679999999999987 99999998631
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
..+.++..+. .++.++ .|++..||.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.
T Consensus 449 ---~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 449 ---DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred ---CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 1233332222 222232 2456789999974 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 523 ~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 523 LVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999885 5799999999973 467899999999999999999887653
No 94
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-43 Score=342.10 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=196.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|..+||.++| +++.++++||+.+++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58899999998 5688999999999999999999999999999999999999997 9999999988532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.+..+||+||++..|-.|||+||+......+..+ ..+.+.+.+++++|++++|.++.+.+- ..||||||||+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 1235899999999999999999999887766422 223456677889999999999998853 479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
|||||+.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-|.. .|...+|||.+++++|+++++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999996 57899999999999999999999998754
No 95
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=347.91 Aligned_cols=220 Identities=28% Similarity=0.397 Sum_probs=196.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++.+||++++ +.-.+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++..
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 57899999999 6688999999999999999999999999999999999999996 8999999997532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--------PDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (712)
.+..++.-+|...+|+.|||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|+..| +|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cC
Confidence 12457889999999999999999999865331 111 1245667889999999999999999776 59
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|+||+||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++.||. ..+..+||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999999999999999998 579999999995 6899999999999999999
Q ss_pred EecChhhHHH
Q 005142 275 YFGETSAAFE 284 (712)
Q Consensus 275 ~~G~~~~~~~ 284 (712)
+.|+++++.+
T Consensus 230 AeG~P~eV~~ 239 (250)
T COG0411 230 AEGTPEEVRN 239 (250)
T ss_pred ccCCHHHHhc
Confidence 9999998754
No 96
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=357.96 Aligned_cols=207 Identities=27% Similarity=0.361 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999998 3467999999999999999999999999999999999999885 899999998754334679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..+.. +..||||||||++||++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987521 0 1235678899999998766664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5678899999999999999988754
No 97
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-42 Score=361.76 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=184.9
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 005142 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (712)
Q Consensus 53 ~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------- 125 (712)
.++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 566777776 4567999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1223445567889999999987777754 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|++++.|++++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 489999999996 578899999999999999999988765
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
No 98
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.4e-42 Score=350.10 Aligned_cols=220 Identities=46% Similarity=0.705 Sum_probs=183.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~ 129 (712)
+.|+|+++++...+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++++...+|+|.++|++... .++.
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 67999999885321 14689999999999999999999999999999999999987211148999999987532 2357
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
++|++|++.+++.+||+||+.+......+.....+....++++ .++.+++.+..++. ++.||||||||++||++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 157 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHH
Confidence 9999999999999999999998765432222122223334555 88888987766654 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998778999999999755789999999999999999865
No 99
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=355.45 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999998885 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----------DKM--PWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (712)
....++|++|++.+++.+||+||+.++...... ... ...+..+.+.++++.+||.+..++. +
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ-----A 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC-----h
Confidence 123489999999999999999999986431110 000 1123345678889999998766664 4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999996 5788999999999999
Q ss_pred eEEEecChhhH
Q 005142 272 KTVYFGETSAA 282 (712)
Q Consensus 272 ~iv~~G~~~~~ 282 (712)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999988765
No 100
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=358.79 Aligned_cols=220 Identities=25% Similarity=0.349 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+.......+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 48899999988421111246999999999999999999999999999999999999885 8999999987431
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChH
Q 005142 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 198 (712)
.++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..++ .++.||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELSGG 149 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHH
Confidence 124689999996 4555 69999998865432 1234445567888999999963 4555 34579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999999996 57888999999999999999999
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13649 229 PKDIF 233 (280)
T ss_pred HHHHh
Confidence 88763
No 101
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-42 Score=347.42 Aligned_cols=201 Identities=30% Similarity=0.418 Sum_probs=171.8
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEE
Q 005142 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAA 131 (712)
Q Consensus 54 ~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~~~ 131 (712)
++|+++.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.++
T Consensus 2 ~~~l~~~~~----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYK----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeC----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceE
Confidence 578888872 1157999999999999999999999999999999999999885 9999999987521 235699
Q ss_pred EEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 132 YVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 132 yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
|++|++. .+..+||+||+.+..... . . ..++++++++.+||.+..++. ++.||||||||++||++|+
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHH
Confidence 9999974 334579999998864321 1 1 125678899999998777764 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999987899999999996 5678899999999999875
No 102
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-41 Score=365.40 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=193.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++||++.+.... +...+|+|||+++++||+++|+|+||||||||+++|+|+++++...+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3699999999985322 23569999999999999999999999999999999999998743348999999987521
Q ss_pred -----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
+.+.++||+|++ .++|.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124699999997 68899999999987654431 23455666788999999999754322 2 3477899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+||+||+.+|++||+||||+|||..++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999874 89999999996 5778899999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 988765
No 103
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-41 Score=394.66 Aligned_cols=251 Identities=28% Similarity=0.437 Sum_probs=207.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
.|.+|+.+|+++++..|..+... . ..+ ........++++|+.++|+.+ ++..||+|+|+.+++
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~-~----------~~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~ 378 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYS-K----------GGR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIPS 378 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCccc-c----------cCC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeCC
Confidence 58899999999999999877522 1 011 112234569999999999653 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
|+.+||+|||||||||++++|.+++.|. +|+|.+||.+++. .+.++|.|.|+|.+|.. ||+||+.|+..
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-- 452 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-- 452 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998542 24689999999999876 99999998742
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
+.+.++..+. +.+.+ ..|.+..||.+|+..+ +||||||||++|||||+++|+|||||||||+||+++..
T Consensus 453 ---dat~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~ 526 (1228)
T KOG0055|consen 453 ---DATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER 526 (1228)
T ss_pred ---cccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence 2233333222 33333 3467889999998544 49999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.|.+.|.+.. +|+|.|+++|+.+ .+.+ +|+|++|++|++++.|+.+|+..
T Consensus 527 ~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 527 VVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 9999998875 5899999999964 4544 99999999999999999999875
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.3e-41 Score=354.34 Aligned_cols=215 Identities=30% Similarity=0.376 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRF-----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEe-----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 4689999988 2357999999999999999999999999999999999999875 8999999986421
Q ss_pred ------------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005142 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (712)
Q Consensus 126 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (712)
..+.++|++|++.+++..||.||+.++.... ......+..+.+.++++.+|+.+..++ .++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----MPA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----Chh
Confidence 1356999999999999999999998863211 112344455678899999999876665 446
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999874 89999999996 57888999999999999
Q ss_pred EEEecChhhH
Q 005142 273 TVYFGETSAA 282 (712)
Q Consensus 273 iv~~G~~~~~ 282 (712)
+++.|+.++.
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987654
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.8e-42 Score=347.64 Aligned_cols=206 Identities=31% Similarity=0.432 Sum_probs=178.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSF-----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEE-----CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 4688999988 2367999999999999999999999999999999999999875 8999999987521
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+...... ....++..++++++++.+|+.+..++. ++.||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHH
Confidence 13569999999999999999999988643211 123344556788899999998766664 4679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999988889999999996 578899999999999974
No 106
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=360.40 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+.......+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 47899999988321111256999999999999999999999999999999999999886 9999999987421
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCCHH
Confidence 124699999996 355 579999998865432 223455567789999999996 556664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999999996 67889999999999999999999
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
+++..
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 88754
No 107
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=365.42 Aligned_cols=222 Identities=24% Similarity=0.297 Sum_probs=190.5
Q ss_pred EEEEEeEEEEEEccCC-----cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC
Q 005142 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~ 125 (712)
.|+++||++.|..+.+ +...+|+|||++|++||+++|+|+||||||||+++|+|++++. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 5899999999853211 1357999999999999999999999999999999999999875 8999999987421
Q ss_pred --------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 005142 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (712)
Q Consensus 126 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~ 194 (712)
.++.++||+|++ .+.+.+||.+++........ ...+++.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2345566678999999999963 4454 5678
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|||||||||+||+||+.+|++||+||||++||..++.++++.|+++.+ .|.|+|++|||. ..+.+++|+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 499999999996 577889999999999999
Q ss_pred EEecChhhHH
Q 005142 274 VYFGETSAAF 283 (712)
Q Consensus 274 v~~G~~~~~~ 283 (712)
++.|+++++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988764
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.3e-41 Score=347.74 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=179.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 78899999883 2357999999999999999999999999999999999999875 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+|++||+.+..... ....++..+.++++++.++|.+..++. +..||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1256899999998888899999999875432 123344456678899999998766664 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++ +++.+.+|++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999987789999999996 5788899999999999985
No 109
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=373.03 Aligned_cols=202 Identities=26% Similarity=0.377 Sum_probs=179.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEecCCCCC
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDNLI 140 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---------~~~~~~yv~Q~~~l~ 140 (712)
.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. ..+.++||+|++.++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4899999999999999999999999999999999999885 8999999987531 124699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005142 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDE 220 (712)
+.+||+||+.+....+ ..+.++.++++.++++.+||.+..++ +++.|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 22345556778899999999877776 456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|++++.|++++..
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999976 589999999996 6788999999999999999999987654
No 110
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-41 Score=346.74 Aligned_cols=209 Identities=26% Similarity=0.370 Sum_probs=176.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+..+ .+.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 6789999988321 11256999999999999999999999999999999999999875 9999999987421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. ++.||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHH
Confidence 0146999999999999999999999865432 122334456788899999998766664 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++ +.+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999986 4899999999974 55 458999999999975
No 111
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.8e-41 Score=351.03 Aligned_cols=219 Identities=28% Similarity=0.380 Sum_probs=182.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G~~~~~---- 125 (712)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE-----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 4689999988 3467999999999999999999999999999999999985 453 8999999987431
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 198 (712)
....++|++|++.+++.+|++|++.+....... . .....+..+++.++++.+||.+ ..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886542211 0 0122334567889999999973 4555332 249999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~G 277 (712)
||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++... +|++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987889999999997 567777 8999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
++++..
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 987543
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-41 Score=351.08 Aligned_cols=216 Identities=24% Similarity=0.402 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.+...
T Consensus 3 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 3 LYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred EEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHH
Confidence 7899999988 2357999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~ 149 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQK 149 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 124599999999999999999999986432100 0 0112344567889999999987776644 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999999976 79999999996 5788999999999999999999877
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
No 113
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=356.67 Aligned_cols=215 Identities=30% Similarity=0.418 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 7899999988 2356999999999999999999999999999999999999885 8999999987521
Q ss_pred -CcCcEEEEecCCCC-CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..++. +..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHH
Confidence 12469999999753 34458999998864432 123444456788899999998777664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+++|++++|++|++++.|++++..
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 5788899999999999999999987754
No 114
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=354.53 Aligned_cols=218 Identities=28% Similarity=0.405 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58899999988 3467999999999999999999999999999999999998875 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|+..+++.+|+.||+.++...... .....++..++++++++.+||.+..++. ++.||||||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHH
Confidence 124699999999888889999999886321100 0111233445678899999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|+++..|+.++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987799999999996 578899999999999999999987765
No 115
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=351.91 Aligned_cols=224 Identities=28% Similarity=0.365 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC---C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---L 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~---~ 125 (712)
.|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 58999999988 2357999999999999999999999999999999999998763 124899999998753 1
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++.+||.||+.+....+. .....++..++++++++.++|........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHH
Confidence 12469999999999999999999998754321 11123444566788999999853211111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 69999999996 57888999999999999999999876
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 53
No 116
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=357.76 Aligned_cols=228 Identities=27% Similarity=0.446 Sum_probs=191.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 589999999983 2356999999999999999999999999999999999999885 8999999987531
Q ss_pred --CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++. ++.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHHHHH
Confidence 1256999999973 234569999998864322 234455567789999999998777764 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 56778999999999999999999987
Q ss_pred HHH---HHHHcCCCCC
Q 005142 282 AFE---FFAQAGFPCP 294 (712)
Q Consensus 282 ~~~---~f~~~g~~~p 294 (712)
... .+...+.++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 229 VFAEKEMLRKVNLRLP 244 (283)
T ss_pred HhcCHHHHHHcCCCCC
Confidence 653 3334455443
No 117
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=356.34 Aligned_cols=217 Identities=26% Similarity=0.353 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999998831 2356999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++ .+++..||.||+.+..... ..+.++..++++++++.+||++..++. +..||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHH
Confidence 135699999997 3666789999999875432 234455567789999999998877764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++. .||++++|++|++++.|+.++..
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999997 4554 59999999999999999988764
No 118
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-41 Score=347.20 Aligned_cols=214 Identities=31% Similarity=0.412 Sum_probs=176.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 6789999988321 01136999999999999999999999999999999999999875 8999999987431
Q ss_pred --CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCChHH
Q 005142 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGe 199 (712)
.++.++|++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 135699999998 4677899999998865432111 12222222 35788999995 455553 45799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999996 5777899999999999998764
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=353.51 Aligned_cols=216 Identities=32% Similarity=0.444 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 47899999988 3467999999999999999999999999999999999998875 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++|++|++.+++.+||+||+.+..... ....++..+.++++++.+||.+..++.+ ..||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888899999998864321 1122334456888999999987667644 5799999999999
Q ss_pred HHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 206 A~aL~------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|.|||++||++ +++.++||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5789999999996 57888999999999999999998
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
+++..
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 87653
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-41 Score=345.28 Aligned_cols=204 Identities=31% Similarity=0.454 Sum_probs=173.1
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 005142 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (712)
Q Consensus 54 ~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~ 128 (712)
++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 2 ~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHh
Confidence 6788888731 1257999999999999999999999999999999999999875 8999999986532 135
Q ss_pred cEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 129 TAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 129 ~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
.++|++|++. .++.+||+||+.+..... .....+..+.++++++.++|.+..++. +..||||||||++||+
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lar 147 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAG 147 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHH
Confidence 6899999974 356789999998865432 122344456788899999998766664 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987799999999996 57888999999999985
No 121
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-41 Score=363.90 Aligned_cols=227 Identities=23% Similarity=0.283 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~i~G~~~~~---- 125 (712)
.|+++||++.|..+ .+...+|+||||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 48999999998432 112569999999999999999999999999999999999987421 358999999987421
Q ss_pred -----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
+.+.++||+|++ .+.|.+||.+++........ ....++.++++.++++.+||.+..+. -+.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHH
Confidence 123699999997 57899999999877654321 23455667789999999999752211 12367789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+||+||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||. ..+.+++|+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999986 589999999996 5678899999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 988764
No 122
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=352.91 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 12 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 12 QIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 59999999987 24579999999999999999999999999999999999987421 148999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCh
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+++. +..++ .+..|||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSg 157 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLSG 157 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCH
Confidence 1356999999998888 89999999875432 123444456788899999884 23344 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 79999999996 5788899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 98765
No 123
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.3e-42 Score=347.70 Aligned_cols=209 Identities=32% Similarity=0.461 Sum_probs=173.9
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEE
Q 005142 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (712)
Q Consensus 54 ~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 133 (712)
++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.....+.++|+
T Consensus 2 ~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSY-----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEE-----CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 57888887 2356999999999999999999999999999999999999885 899999998653233569999
Q ss_pred ecCCCCC--CCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 134 TQDDNLI--GTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 134 ~Q~~~l~--~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+|++.+. ..+||+||+.+........ ....++.+++++++++.++|++..++. +..||||||||++||++|+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHH
Confidence 9998763 3479999998864321100 011233456788999999998766664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 5788999999999876 55554
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=349.52 Aligned_cols=224 Identities=28% Similarity=0.372 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 48899999988 2357999999999999999999999999999999999998641 1248999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+||+||+.+...... .....++..+.+.++++.+||.+..+... +..+.+||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHH
Confidence 13569999999988889999999998754321 11123445567889999999864211111 224568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999965 79999999996 5778899999999999999999987653
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=357.69 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++||++.+. +.+.+|+|||+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 68899999883 2356999999999999999999999999999999999999875 8999999987531
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHH
Confidence 1256999999975 356679999998865432 234455567788999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++ +.||++++|++|++++.|++++..
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987899999999997 456 679999999999999999988753
No 126
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=354.49 Aligned_cols=220 Identities=31% Similarity=0.390 Sum_probs=186.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 9 ~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 9 DTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSS 80 (265)
T ss_pred CceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCH
Confidence 3469999999988 2357999999999999999999999999999999999998875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|+..+++.+||.||+.+........ .....+..++++++++.++|.+..++.+ +.||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHH
Confidence 1346999999988888999999998763211100 0112233466888999999987666644 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999999996 57889999999999999999998776
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 235 ~ 235 (265)
T PRK10575 235 L 235 (265)
T ss_pred h
Confidence 4
No 127
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=337.95 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||+..| +..++|++||+++++||+++|+|+||+||||||++|+|..++. +|+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 58999999988 5588999999999999999999999999999999999999875 89999999986421
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHH
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
+..++||||...+|+.|||+|||..++..+.. ++..+...+++.+.+- |.+..+++-| .|||||+|.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 35699999999999999999999998654321 1111222566666653 5555666544 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.+.. ....+++|+.++|.+|+++++|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 78999998884 678999999999999999999999886
Q ss_pred HH
Q 005142 283 FE 284 (712)
Q Consensus 283 ~~ 284 (712)
.+
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
No 128
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-41 Score=348.79 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYY-----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEe-----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 4689999988 3457999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+...... .. ..+.++++++.++ +.+..++ .++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHH
Confidence 12469999999999999999999998754321 11 1234566777776 5555555 44579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999996 578889999999999999999998765
No 129
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=351.30 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 59999999998 23569999999999999999999999999999999999987621 238999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCh
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+++ +||+||+.+...... .....+.++++.+.++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112334456788889988873 33444 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.+++|++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 987653
No 130
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=353.77 Aligned_cols=220 Identities=29% Similarity=0.429 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 58999999988 34679999999999999999999999999999999999998753346999999986421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (712)
..+.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..|+.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1246899999999999999999998764211000 0112334567889999999987777644 579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 489999999996 5688999999999999999
Q ss_pred EecChhh
Q 005142 275 YFGETSA 281 (712)
Q Consensus 275 ~~G~~~~ 281 (712)
+.|++++
T Consensus 233 ~~g~~~~ 239 (262)
T PRK09984 233 YDGSSQQ 239 (262)
T ss_pred EeCCHHH
Confidence 9998765
No 131
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-41 Score=352.71 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 78999999883 2356999999999999999999999999999999999999875 8999999987531
Q ss_pred -CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+ +.||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1356999999963 333469999998764321 2234455677889999999988777754 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|++++..
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 5788899999999999999999988764
No 132
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-41 Score=349.55 Aligned_cols=221 Identities=26% Similarity=0.343 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.. +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 48999999998 23569999999999999999999999999999999999864 211248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. ||+||+.+....+. ....++.++++++.++.++|.+...... +..++.|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13569999999988884 99999998754321 1123344567888999999854222222 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++.+++|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 57889999999999999999998775
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 4
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.5e-41 Score=352.98 Aligned_cols=222 Identities=26% Similarity=0.337 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 005142 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~- 125 (712)
.|+++||++.+.... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 378999999884210 11367999999999999999999999999999999999999885 8999999987431
Q ss_pred -------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 005142 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 195 (712)
..+.++|++|++ .+++.+||+||+.+..... ......+..+++.++++.+||. +..+.. +.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhC
Confidence 124699999996 4677899999998764321 1122334456788999999996 555654 4579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999874 89999999996 5788899999999999999
Q ss_pred EecChhhHH
Q 005142 275 YFGETSAAF 283 (712)
Q Consensus 275 ~~G~~~~~~ 283 (712)
+.|++++..
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987653
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.5e-41 Score=344.71 Aligned_cols=208 Identities=29% Similarity=0.445 Sum_probs=182.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cCcE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-~~~~ 130 (712)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++.... .+.+
T Consensus 1 l~l~~v~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRF-----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 4689999987 2467999999999999999999999999999999999998875 99999999875322 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+|++|++.+++.+|++||+.+...... .. ..++.++++.+||++..|.. +..||||||||++||++++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999988754321 11 24577889999998777664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+.||++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999987899999999996 5788999999999999999999865
No 135
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-42 Score=340.99 Aligned_cols=220 Identities=26% Similarity=0.440 Sum_probs=204.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~ 129 (712)
.|+++++++++ +++.+++|+||.++||+|.+++|||||||||.+++|.|++.|+ +|+|.++|.+... ...+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58999999999 6789999999999999999999999999999999999999986 9999999998643 3467
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL 209 (712)
|||.|.+..|++.+||.|.|.|.|.++ ++++++.+..++.+|+.+++......+| ++||.|.+|++.+..++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999986 6789999999999999999987776654 67999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 005142 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (712)
Q Consensus 210 ~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 287 (712)
+++|+++|||||+|||||.+...+-+.+.+++++|.|||+++|+. +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999999999999999999995 78999999999999999999999999887553
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=342.22 Aligned_cols=207 Identities=29% Similarity=0.413 Sum_probs=176.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
++++|+++.+. .+. .|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46899999872 222 3999999999999999999999999999999999875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+||+||+.+...... .. .++.+++++++++.+||.+..++. +.+||||||||++||++
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 223456788999999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999976 489999999996 6788999999999999998754
No 137
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=352.84 Aligned_cols=221 Identities=29% Similarity=0.387 Sum_probs=187.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 5 VARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYAS 76 (265)
T ss_pred ccEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCH
Confidence 3469999999998 3467999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++.+||+||+.+......+ .....+...++++++++.+||.+..++. ++.||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHH
Confidence 124699999999999889999999875311100 0001123345688899999998766664 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987 489999999996 57899999999999999999999876
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 54
No 138
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-41 Score=394.08 Aligned_cols=246 Identities=30% Similarity=0.439 Sum_probs=202.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|...... .+ .......++++|+++.|. +++.+|+|+|++++|
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 57889999999999877633201 00 111223499999999983 257899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||++.|.|+++|. +|+|.+||++++. .++.++||+|++.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999985 9999999998642 24679999999999995 999999998431
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
.+.++..+. +.+.++. +++..||.+|+ ....||||||||++||||++++|++|+||||||+||+.+..
T Consensus 430 ----at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIAN--LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHHh--CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 233333332 3334443 46688999995 55679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+.+.++++. +|+|+|+++|+++ .+ +.+|+|++|++|++++.|+.+++..
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999887 5689999999984 34 4599999999999999999998765
No 139
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-41 Score=374.60 Aligned_cols=227 Identities=31% Similarity=0.400 Sum_probs=200.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~i~G~~~~----- 124 (712)
.|+++||++++... ++...+++||||++++||++||+|+|||||||+.++|.|+++++ ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 69999999999764 33457999999999999999999999999999999999999876 456899999998531
Q ss_pred ----CCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
.+.+.++||+|++ .+.|-+||.+.+.-....+.. .++++.++++.++|+.+||++.... +.++++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1236799999996 466779999999988776643 3478888999999999999886654 5689999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||.||+||+.+|++||+||||++||+.++.+|++.|+++.+ .|.++|++|||+ .-+.++||+|++|++|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 699999999997 6789999999999999999999
Q ss_pred ChhhHHH
Q 005142 278 ETSAAFE 284 (712)
Q Consensus 278 ~~~~~~~ 284 (712)
++++++.
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9998875
No 140
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.4e-41 Score=351.21 Aligned_cols=217 Identities=32% Similarity=0.447 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6889999988 3467999999999999999999999999999999999999875 8999999987432 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.+.++|++|++.+++.+||+||+.+....... .....++..+++.++++.+++.+..++. +..||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHH
Confidence 24689999998778888999999885321100 0011223345788899999998766764 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|+.++.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999997 578899999999999999999988764
No 141
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-41 Score=354.55 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+. +.+.+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 478999999883 2346999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++. .+...||.||+.+..... ....++..++++++++.+||.+..++. ++.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246899999963 333579999998765321 233445556788999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.||++++|++|++++.|++++..
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 5788999999999999999999998764
No 142
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.7e-41 Score=366.68 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=180.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----cC-C--------CcCcEEEEe
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TK-L--------SFGTAAYVT 134 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~----~~-~--------~~~~~~yv~ 134 (712)
...+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++ .. . +.+.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 457899999999999999999999999999999999999885 8999999962 11 0 124699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC
Q 005142 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (712)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~ 214 (712)
|++.+++.+||+||+.++.... ..++.+.++++.++++.+||++..|+. +.+|||||||||+|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 234556667889999999998877774 45799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+|||||||+|||+.++..+.+.|++++++ |+|||++|||+ +++.+++|++++|++|+++..|++++..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999874 89999999996 6789999999999999999999998764
No 143
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=344.29 Aligned_cols=214 Identities=28% Similarity=0.429 Sum_probs=186.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++||++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFY-----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 4689999988 3457999999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+|++||+.+....+. .......+.++++++.+||.+..++. +..||||||||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999988755431 22344456778899999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999874 89999999996 578899999999999999999987654
No 144
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-41 Score=399.40 Aligned_cols=242 Identities=27% Similarity=0.340 Sum_probs=197.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.+++.+. +. ..+ ......++++|++++|.. .++.+|+|+|++++|
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~----~~----------~~~----~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE----AK----------TDP----GKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc----Cc----------CCC----CCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 577889999999986554321 00 000 011225999999999842 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||++.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998542 24679999999999987 99999997632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
.+. +.+.++++..|+ ++..||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234444555444 45678999874 57799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 589999999973 467899999999999999999887653
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.1e-41 Score=343.05 Aligned_cols=211 Identities=30% Similarity=0.360 Sum_probs=179.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQG-EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCC-CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 58999999988321 01135999999999999999999999999999999999999885 89999999875321
Q ss_pred -----cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.+.++|++|++.+++.+||.||+.+....+ .....+.++++.++++.++|.+..++. +..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHH
Confidence 246999999999999999999998865432 123344567788999999998766664 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++ +.+|++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 899999999974 55 5699999999999875
No 146
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=347.25 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 389999999983 3579999999999999999999999999999999999985 321248999999987521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++.+|++||+.+..... ......+..++++++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998764432 111233445678889999998642211111 245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 57889999999999999999999876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 4
No 147
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=350.08 Aligned_cols=228 Identities=23% Similarity=0.339 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999998831 1246999999999999999999999999999999999999875 8999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+++.+..++. ++.||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 677789999998875422 123444556788899999998777664 4679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.. +|++++|++|++++.|++++..
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 89999999997 45654 9999999999999999988764
Q ss_pred H---HHHHcCCCCC
Q 005142 284 E---FFAQAGFPCP 294 (712)
Q Consensus 284 ~---~f~~~g~~~p 294 (712)
+ .+...|.++|
T Consensus 231 ~~~~~~~~~~~~~~ 244 (269)
T PRK13648 231 DHAEELTRIGLDLP 244 (269)
T ss_pred cCHHHHHhcCCCCC
Confidence 3 3334454443
No 148
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=346.61 Aligned_cols=222 Identities=26% Similarity=0.353 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 47889999998 33679999999999999999999999999999999999875322248999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++|++|++.+++ .||+||+.+....+. ......+.++++.++++.++|.+...... +..++.||||||||++|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 599999998754321 00012334456788999999953221111 12456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999865 89999999996 578899999999999999999988764
No 149
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=348.86 Aligned_cols=224 Identities=25% Similarity=0.368 Sum_probs=184.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~- 125 (712)
...|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 34589999999882 3569999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
.++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+..|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHH
Confidence 1356999999998887 799999988754321 1234445567889999999843211111 12456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+++|++++|++|+++..|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 78999999996 578889999999999999999998
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 240 ~~~~ 243 (260)
T PRK10744 240 DTIF 243 (260)
T ss_pred HHHH
Confidence 7653
No 150
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=350.80 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=183.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 19 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 19 KMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred eEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 69999999998 3457999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..++++++++.+||.+...... +..++.|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13568999999988885 999999987543211 1123344567888999999964211111 1245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999996 57889999999999999999998876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 249 ~ 249 (267)
T PRK14235 249 M 249 (267)
T ss_pred H
Confidence 5
No 151
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=346.36 Aligned_cols=222 Identities=24% Similarity=0.336 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEecCC-
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~I~i~G~~~~~- 125 (712)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 2 ~~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 358899999988 3467999999999999999999999999999999999973 331 138999999987531
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
..+.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...... +..+..|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~ 151 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHH
Confidence 1346999999998887 599999988754321 1112334466888999999865322222 12456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|+++||||||+|||+.++..+.+.|++++ +++|||+++|++ +++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999995 479999999996 578899999999999999999998
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 8764
No 152
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9e-41 Score=345.05 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=186.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999883 457999999999999999999999999999999999998875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1223344567789999999987666644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+.+|++++|||||+|||..++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.++..
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999875 89999999996 5788999999999999999999987653
No 153
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=349.07 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=185.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC-
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~- 125 (712)
...|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 4469999999988 3467999999999999999999999999999999999998641 1248999999987521
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
..+.++|++|++.+++ .||+||+.++.... ....+++.++++.++++.++|.+..+... +..++.|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHH
Confidence 1346999999998887 59999999875431 11233445567888999999864322222 23567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 79999999997 578899999999999999999998
Q ss_pred hhH
Q 005142 280 SAA 282 (712)
Q Consensus 280 ~~~ 282 (712)
++.
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 765
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=352.30 Aligned_cols=220 Identities=25% Similarity=0.378 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|....+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999998831 23469999999999999999999999999999999999998752123999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++. +++..||.||+.+..... ..+.++..++++++++.+||.+..++ .++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHH
Confidence 1256999999974 667789999998864322 23455666788999999999877666 45689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999874 899999999974 55 579999999999999999988764
No 155
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=348.95 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=199.5
Q ss_pred eEEEEEeEEEEEEcc---------C----------CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005142 50 ARLTWKDLTVMVTLS---------N----------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~---------~----------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~ 110 (712)
..++++|+++-+..+ . .+...-++|+|++++.||+..|||-||||||||+++|.++..|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 358889998877432 0 12234589999999999999999999999999999999999986
Q ss_pred CceeEEEECCEecC---------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005142 111 FLSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (712)
Q Consensus 111 ~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (712)
+|+|+++|.++. .+++.++.|+|...|+|+.||.||..|+..++ +++++++++++.+.|+.+||+.
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 999999998742 23567999999999999999999999998875 5789999999999999999999
Q ss_pred cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHh
Q 005142 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFE 260 (712)
Q Consensus 182 ~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~ 260 (712)
..+. ++++|||||||||.|||||+.+|+||++|||+|+|||--+.++-+.|.+|.+ .++|||++|||. +|.++
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 8887 5678999999999999999999999999999999999999999999999976 589999999995 78999
Q ss_pred cCCeEEEEeCCeEEEecChhhHHH
Q 005142 261 LFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 261 ~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+.|||.+|++|+++..|++++++.
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999998864
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-41 Score=343.84 Aligned_cols=213 Identities=27% Similarity=0.385 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
++++||++.+. .+ ..|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 68999999983 22 23899999999999999999999999999999999875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+|+.||+.+...... . ..+...+++.++++.+||++..++. ++.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987532111 1 1223456788999999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++.+|+++||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.+++|++++|++|++++.|+.++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999976 489999999996 5788899999999999999999877553
No 157
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=348.39 Aligned_cols=221 Identities=22% Similarity=0.346 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 59999999988 34579999999999999999999999999999999999986 321248999999987521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. ||+||+.+..... .....++..++++++++.+++.+...... +..+++|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13569999999988886 9999998865432 11123444567888899999854211111 1245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 57889999999999999999999886
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 241 ~ 241 (259)
T PRK14274 241 M 241 (259)
T ss_pred H
Confidence 5
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-41 Score=355.17 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+..+.+..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999998321101135999999999999999999999999999999999999875 8999999986420
Q ss_pred -----CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
.++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++. ++.|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 1346999999973 444 59999999865321 123444456788899999994 455553 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999996 578899999999999999999
Q ss_pred cChhhHH
Q 005142 277 GETSAAF 283 (712)
Q Consensus 277 G~~~~~~ 283 (712)
|+.++..
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9987653
No 159
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-41 Score=346.37 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58899999988 3457999999999999999999999999999999999998875 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.++|+ +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1134677889999996 44454 45679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987 489999999996 578889999999999999999988765
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=352.17 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=186.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHH
Confidence 36999999998731 2357999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.++.++|++|++. .++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHH
Confidence 1356999999973 567789999998865422 1234445567889999999987777744 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+.++.
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999876 599999999974 45 47999999999999999988765
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 230 ~ 230 (271)
T PRK13632 230 L 230 (271)
T ss_pred h
Confidence 3
No 161
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.2e-39 Score=400.95 Aligned_cols=222 Identities=27% Similarity=0.388 Sum_probs=196.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++||++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLD 999 (2272)
T ss_pred CceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHH
Confidence 347999999999831 2467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.++.+||++|++.+++.+||+||+.+.++++ ..+.++.+++++++++.+||++..|+.+ ++|||||||||+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLs 1071 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLS 1071 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 2356999999999999999999999987654 2334455677899999999998877754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+||+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ +++..++|+|++|++|+++..|+++++.+
T Consensus 1072 LArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999995 599999999996 67889999999999999999999998876
Q ss_pred HH
Q 005142 285 FF 286 (712)
Q Consensus 285 ~f 286 (712)
.|
T Consensus 1150 ~~ 1151 (2272)
T TIGR01257 1150 CF 1151 (2272)
T ss_pred hc
Confidence 55
No 162
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=359.23 Aligned_cols=229 Identities=19% Similarity=0.233 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~i~G~~~~~---- 125 (712)
.|+++||++.|..++ +...+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 488999999985322 2357999999999999999999999999999999999998642 2358999999987421
Q ss_pred -----CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005142 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (712)
..+.++||+|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+..+. .+.++.+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--MRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--HhCCchhC
Confidence 1246999999975 6788999999986432111000 1123445678899999999753211 12356789
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|||++|||. ..+.+++|+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987 489999999996 6788999999999999999
Q ss_pred EecChhhHH
Q 005142 275 YFGETSAAF 283 (712)
Q Consensus 275 ~~G~~~~~~ 283 (712)
+.|+++++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999987654
No 163
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=352.46 Aligned_cols=219 Identities=26% Similarity=0.403 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccC-CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 51 RLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
.|+++||++++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 589999999984211 11356999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 --SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++. ++ ..||.|++.|..... ..+..+.+++++++++.+||++..++.+ +.|||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~q 151 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQ 151 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHH
Confidence 1356999999974 44 459999999875432 2344555677899999999988777754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++. ++.. ||++++|++|++++.|+++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 4999999999974 5554 9999999999999999988
Q ss_pred hHH
Q 005142 281 AAF 283 (712)
Q Consensus 281 ~~~ 283 (712)
+..
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 764
No 164
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.3e-41 Score=364.31 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=180.0
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 005142 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (712)
Q Consensus 56 ~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---------~ 126 (712)
||++.+ +++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 4 ~l~~~~-----~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRL-----GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEE-----CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 677777 2233 4 999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++. ++.|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 1233456788999999998877764 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|+++++.
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 5788999999999999999999988764
No 165
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=347.29 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~--- 125 (712)
.++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|.. +.+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 48899999998 23579999999999999999999999999999999999986421 248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+++.+||+||+.+....+. ....++.+++++++++.+||.. ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 13569999999999999999999988754321 1123445567888999999842 3333 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe------CC
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~------~G 271 (712)
||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999996 57889999999997 79
Q ss_pred eEEEecChhhHH
Q 005142 272 KTVYFGETSAAF 283 (712)
Q Consensus 272 ~iv~~G~~~~~~ 283 (712)
++++.|++++..
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999987653
No 166
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=388.24 Aligned_cols=245 Identities=27% Similarity=0.375 Sum_probs=197.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+++.+.+|+.++++.++..+. + + ... .+..-.++++|+++.++. .++.+|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~----~--~-------~~~-----~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE----G--K-------RVI-----ERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC----C--C-------cCC-----CCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 467788999999875543221 0 0 000 011225999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 441 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR--- 441 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC---
Confidence 9999999999999999999999999986 8999999998532 24679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
++..+.+ ++++.++..| |++..||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+
T Consensus 442 -~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 442 -TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1112222 3344444443 556789999974 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..+.+.|+++.+ ++|+|++||++ ...+.||+|++|++|++++.|+.++..
T Consensus 516 ~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 516 ERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999998854 69999999997 357889999999999999999988764
No 167
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-40 Score=342.34 Aligned_cols=213 Identities=29% Similarity=0.453 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46889998872 2 3899999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998865332 1234445567788999999987777644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|++++.|+.++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999764 89999999996 568889999999999999999987654
No 168
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=363.73 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|++ ||++++ +++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~-----~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQL-----GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEe-----CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 556 888887 2232 3 899999999999999999999999999999999885 8999999986421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++||+|+..+++.+||+||+.++.. ....++++++++.+||.+..++. ++.||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 13579999999999999999999988632 11235688999999998777764 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ +++.+++|++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 67899999999999999999999987
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 64
No 169
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-41 Score=321.98 Aligned_cols=220 Identities=28% Similarity=0.416 Sum_probs=195.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.+..++++.+|.. ..+.+|+|+|++|.+||.++++||||||||||||+++|+.+|. .|+|.+||+++.-....-
T Consensus 3 ~l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccc
Confidence 3667788888742 2356999999999999999999999999999999999999986 899999999876554566
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
|.|+|++.++|.+||.||+.|+.+++ ++.+.++.+++.+.+..+||++..++. +-+|||||||||.|||||+
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALA 148 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhh
Confidence 99999999999999999999998876 577889999999999999999887764 4689999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe--CCeEEEecChhhHHHH
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF 285 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~--~G~iv~~G~~~~~~~~ 285 (712)
.+|++|+||||++.||.-++.++-++|-++.+ .|+.++++||+. +|..-+++++++|+ .|+++..=+++-...|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999999999998876 799999999995 67888999999998 6899987777644443
No 170
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.5e-40 Score=349.41 Aligned_cols=222 Identities=21% Similarity=0.341 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCC----cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 005142 51 RLTWKDLTVMVTLSNG----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~- 125 (712)
.|+++||++++....+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 4899999999842110 1356999999999999999999999999999999999999885 8999999987532
Q ss_pred ----CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++. +++.+||.|++.+...... .....+..+.++++++.+||. +..++ .+..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHH
Confidence 1246999999974 6778899999988654321 123344556788999999994 45555 34579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874 89999999996 5788899999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+.++..
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 877643
No 171
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=344.37 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYY-----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 48999999988 34579999999999999999999999999999999999853 421238999999987521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.++||+|++.+++ .||+||+.+..... + ....+...+.+.++++.+++.+...... +..++.|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1356999999998887 79999999875432 1 1122334466788899988753211111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999996 57889999999999999999999876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 234 ~ 234 (252)
T PRK14239 234 M 234 (252)
T ss_pred H
Confidence 5
No 172
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-40 Score=386.31 Aligned_cols=246 Identities=28% Similarity=0.402 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+... . ... . .....++++|+++.+.. +++.+|+|+|++++|
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~----~---------~~~---~-~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPT----T---------STA---A-ADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCc----c---------cCC---C-CCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 57889999999998776532100 0 000 0 11235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|.++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999886 8999999997532 24679999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~ 230 (712)
..+. +.+.+.++..++. +..||.+|+ ....||||||||++|||+|+++|++|+||||||+||+.++
T Consensus 440 ---~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccCH----HHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1122 3456666776664 457899987 4667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
..+.+.|+++. +++|+|+++|+++ . .+.+|+|++|++|++++.|+.++..+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999985 4799999999974 3 46799999999999999999887653
No 173
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=344.86 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.-+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 34688999887 34679999999999999999999999999999999999975 211248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. ||+||+.+....+ ......++.++.+.++++.+||.+...+.+. ..+.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHH
Confidence 13569999999988886 9999998874332 1111233444667889999999653222221 245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 89999999996 57888999999999999999998775
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 4
No 174
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.9e-40 Score=337.08 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
++++||++.+. .+++|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999872 2468999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++||++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987543211 1 1122345678899999998776664 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|+.+|++++|||||+|||..++..+.+.|++++++ |.|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999996 57788999999999999998875
No 175
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.4e-41 Score=343.79 Aligned_cols=199 Identities=33% Similarity=0.481 Sum_probs=171.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (712)
|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999875 999999998754322235899999999999999999988
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
......+ ....++.++++.++++.+||.+..++. +.+||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 223444556788999999998777764 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 232 ~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
.+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|+..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999764 89999999996 5788999999999999999888654
No 176
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=344.28 Aligned_cols=223 Identities=24% Similarity=0.343 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~-- 125 (712)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. ...+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 458899999988 2367999999999999999999999999999999999987641 1248999999987521
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++|++|++.+++ +|++||+.+...... .....+..++++++++.++|.+...... +..++.||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~ 153 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGGQQ 153 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHH
Confidence 1356999999998887 799999998754321 1123344567788999998853211111 124568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999976 58999999996 5788999999999999999999988
Q ss_pred hHH
Q 005142 281 AAF 283 (712)
Q Consensus 281 ~~~ 283 (712)
++.
T Consensus 232 ~~~ 234 (251)
T PRK14270 232 KIF 234 (251)
T ss_pred HHh
Confidence 753
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=343.85 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 48899999988 2467999999999999999999999999999999999998641 1248999999987431
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++ .||+||+.+...... ....+..++.+++.++.+++.+..+... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHH
Confidence 1356999999998887 799999998754321 1123334556788889998854221111 2355789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999975 79999999996 56889999999999999999999876
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
No 178
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=342.92 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999983 35799999999999999999999999999999999998753 11248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.++|++|++.+++ +|++||+.+...... ..+.++.++.++++++.+++.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346999999998887 899999998754321 1123345567888888888753211111 1245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..|+.++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 79999999996 57889999999999999999998876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 4
No 179
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-40 Score=385.17 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=198.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++..|++|+.++++.++.... . ++.+ .....++++|+++.++ .++.+|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~-----------~~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N-----------DDRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C-----------CccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 567899999999975543211 0 0000 0112589999999984 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999986 8999999997542 24779999999999998 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
.+. +++.++++..|+ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335556666654 4567899987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..+.+.|+++.+ ++|+|+++|++. ..+.||+|++|++|++++.|+.++..
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999865 699999999973 56789999999999999999998875
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=379.17 Aligned_cols=220 Identities=23% Similarity=0.324 Sum_probs=189.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++++ +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|++...
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 48999999988 3467999999999999999999999999999999999998751 138999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++.+++.+||+||+.+....+.......++..++++++++.+||.+..++.+ ++|||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 12569999999999999999999998754321111223445567889999999987777654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999988899999999996 578889999999999999999987754
No 181
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=345.85 Aligned_cols=223 Identities=25% Similarity=0.331 Sum_probs=180.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~- 125 (712)
...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 19 ~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 19 EHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CceEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 3469999999988 34679999999999999999999999999999999999764 211248999999987531
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
..+.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+...... +..+..|||||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq 169 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSALSLSGGQ 169 (268)
T ss_pred cccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcccCCHHH
Confidence 13469999999988886 99999988643221 1112233456777888888853211111 22456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|+.
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999965 68999999996 578899999999999999999988
Q ss_pred hhH
Q 005142 280 SAA 282 (712)
Q Consensus 280 ~~~ 282 (712)
++.
T Consensus 248 ~~~ 250 (268)
T PRK14248 248 EQI 250 (268)
T ss_pred HHH
Confidence 765
No 182
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=334.34 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~ 126 (712)
.++|+|+++.+..+. +++.+|+|+|+++++||+++|+||||||||||+++|+|++++....+|+|.++|++... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999996542 35689999999999999999999999999999999999988321249999999987532 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++|++|++.+++.+||+||+.+.+... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998763210 222 4457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
++|+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+.+|++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 6788887777556888999999999999998765
No 183
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=342.07 Aligned_cols=220 Identities=26% Similarity=0.369 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~-- 125 (712)
+.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 468999999988 24679999999999999999999999999999999999987531 137999999987531
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 196 (712)
..+.++|++|++.+++.+|+.||+.+..... .....++..+.+++.++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 1346999999999999999999998765422 11123334456677777777642 3343 456799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999996 578889999999999999999
Q ss_pred cChhhHH
Q 005142 277 GETSAAF 283 (712)
Q Consensus 277 G~~~~~~ 283 (712)
|++++..
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9987653
No 184
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-40 Score=344.43 Aligned_cols=216 Identities=27% Similarity=0.347 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~-----~~~ 125 (712)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 589999999882 357999999999999999999999999999999999999885 8999999986 321
Q ss_pred ---------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 005142 126 ---------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (712)
Q Consensus 126 ---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 193 (712)
..+.++|++|++ .+++.+|+.||+.+..... . .....+.+..+.++++.+++.+ ..++ .+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDD-----LPT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCc
Confidence 123599999997 3677889999997653221 1 1122344567888999999963 4555 346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.+++|++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 89999999996 57778999999999999
Q ss_pred EEEecChhhH
Q 005142 273 TVYFGETSAA 282 (712)
Q Consensus 273 iv~~G~~~~~ 282 (712)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999988765
No 185
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-40 Score=347.80 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=182.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecCC-
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~I~i~G~~~~~- 125 (712)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999988 34679999999999999999999999999999999999987630 127999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++|++|++.+++.+||+||+.+....... .....++..++++++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 124589999998766668999999886321110 0111123446688899999998766654 457999999
Q ss_pred HHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 201 qRvsIA~aL~---------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
|||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999875 89999999996 578889999999999
Q ss_pred CeEEEecChhhH
Q 005142 271 GKTVYFGETSAA 282 (712)
Q Consensus 271 G~iv~~G~~~~~ 282 (712)
|++++.|++++.
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999988765
No 186
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7e-41 Score=396.28 Aligned_cols=245 Identities=30% Similarity=0.408 Sum_probs=196.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+... +..+ ....-.++++|+++.|+.. +++.+|+|+|++++|
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~-------------~~~~----~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG-------------TLAP----LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC-------------CCCC----CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57889999999998766543200 0000 0112359999999998421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|.++|. +|+|.+||++.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999998532 24679999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1122 234445555544 4567899987 356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 236899999999974 467899999999999999999887654
No 187
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.1e-40 Score=342.08 Aligned_cols=198 Identities=29% Similarity=0.429 Sum_probs=171.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEe-cCCCCCCC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIGT 142 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 142 (712)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 467999999999999999999999999999999999999885 8999999986421 235689998 55678888
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPT 222 (712)
+||+|++.+..... ....++..++++++++.+||.+..|+.+ ..||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875542 1233444567788999999988887754 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|||+.++..+.+.|++++++ |.|||++||++ +++.+++|++++|.+|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 89999999996 5788999999999999998765
No 188
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=377.61 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++||+|++.+++.+||+||+.++...... .....++.+++++++++.+||.+..|..+ ..|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHH
Confidence 124699999999999999999999986432211 11223444567889999999988777654 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ +++.++||++++|++|+++..|++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999988899999999996 678899999999999999999987654
No 189
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-40 Score=393.68 Aligned_cols=247 Identities=26% Similarity=0.388 Sum_probs=199.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+++++.+|+.++++.+++.+. . .. ... .....-.++++|++++|+. ..+.+|+|+|++++|
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~-~---~~---------~~~---~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE-G---TR---------FLH---RPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-C---CC---------CCC---CCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 578899999999987664321 0 00 000 0011235999999999942 345799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999986 8999999998542 24679999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.++ +.+.++..+ +++..||.+|+. ...||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 122332 333333333 456789999874 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 637 e~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 637 EERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999998864 799999999974 468899999999999999999888755
No 190
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-40 Score=395.76 Aligned_cols=251 Identities=25% Similarity=0.299 Sum_probs=197.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. . ..+.... . ... .......++++|++++|+. .++.+|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~---~~~~~~~--~-~~~---~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-E---EEEAPAA--G-SEP---SPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-c---ccccccc--c-ccc---CCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 577899999999987655321 0 0000000 0 000 0011235999999999842 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--- 577 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--- 577 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC---
Confidence 9999999999999999999999999986 8999999998532 24679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+.+ ++.+.++..+ +++..||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+
T Consensus 578 -~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 578 -P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1 12222 2334444444 345678999874 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|++ .++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4799999999974 467799999999999999999988764
No 191
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-41 Score=367.02 Aligned_cols=245 Identities=27% Similarity=0.352 Sum_probs=202.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+...|++|+.++.+++|+.... ... ...... .++++|++++|+. +..++|+|+|+++++
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~~---------------~~~--~~~~~~-~l~~~~vsF~y~~---~~~~~L~~~~l~l~~ 363 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTFP---------------DEQ--TATTGQ-ALELRNVSFTYPG---QQTKALKNFNLTLAQ 363 (573)
T ss_pred HHHHHHHHHhhhccCCcccCCC---------------ccc--cCCccc-eeeeccceeecCC---CccchhhccceeecC
Confidence 3467899999999887775431 000 111112 7999999999953 445799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+..|+|-++|+ +|+|++||.+.... ++.+++++|..++|.+ |+|+||..+..
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-- 437 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-- 437 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC--
Confidence 9999999999999999999999999986 99999999875321 3478999999999988 99999998742
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ .+. +.+.++++.+||++ ..||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+
T Consensus 438 --~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 438 --D-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred --C-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 1 222 34566777777753 56778887 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+.++++.|.+-++ |+|+|++||+.. -.+.||+|++|.+|++++.|..++...
T Consensus 510 E~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 510 ERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999999988765 899999999975 368899999999999999999987764
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=346.80 Aligned_cols=223 Identities=26% Similarity=0.396 Sum_probs=181.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC-
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~- 125 (712)
...|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 11 ~~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 11 NIIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3469999999998 34679999999999999999999999999999999999976310 248999999987421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
.++.++|++|++.+++. ||+||+.+.+..+ ... .+.++++.++++.+++....+... +..+..|||||
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~ 159 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQ 159 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHH
Confidence 12469999999988885 9999999876432 111 223456677888888743211111 22456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC---------
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG--------- 270 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~--------- 270 (712)
|||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999999965 79999999996 678899999999996
Q ss_pred --CeEEEecChhhHHH
Q 005142 271 --GKTVYFGETSAAFE 284 (712)
Q Consensus 271 --G~iv~~G~~~~~~~ 284 (712)
|++++.|+++++.+
T Consensus 238 ~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 238 KVGYLVEFNETKKIFN 253 (269)
T ss_pred ccceEEEeCCHHHHHh
Confidence 67899999887643
No 193
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=341.85 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 48899999988 3467999999999999999999999999999999999998752 1248999999987521
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++ .||.||+.+..... .....+..++++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1356999999999887 79999998875332 11123344466778888888754221111 22456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|+.++.
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 578899999999999999999987754
No 194
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=341.46 Aligned_cols=221 Identities=26% Similarity=0.336 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999988 3467999999999999999999999999999999999987531 1238999999987431
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13568999999988885 99999998755431 1123344566788888888753221111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+.+|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 56888999999999999999999876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 235 ~ 235 (253)
T PRK14261 235 I 235 (253)
T ss_pred H
Confidence 5
No 195
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1e-40 Score=395.46 Aligned_cols=246 Identities=24% Similarity=0.302 Sum_probs=197.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++++|.+|+.++++.++..+... . ... .....-.++++|+++.|. .++.+|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~~----~---------~~~---~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINKK----K---------RTE---LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCcccccc----c---------ccC---CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 57789999999998665533200 0 000 001122599999999983 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|+++|+ +|+|++||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-- 573 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-- 573 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999997532 24679999999999987 99999998632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+.++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 574 -~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 574 -E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred -C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1 122222 333333333 45567999987 457799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|+.++..+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999974 568899999999999999999887654
No 196
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-40 Score=334.77 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=172.4
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 005142 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (712)
Q Consensus 56 ~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---------~ 126 (712)
||++++ +++.+ |+|+++++ |+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 5 ~l~~~~-----~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRL-----PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEec-----CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 788887 23444 99999999 999999999999999999999999875 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++. +..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 346999999999999999999998864321 2233446788899999998766654 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999996 5788899999999999998765
No 197
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-40 Score=345.23 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 5899999999842 12245999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566789999998865421 123445556788999999998776664 4679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++. .+|++++|++|+++..|++++..
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 4554 69999999999999999987754
No 198
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=324.63 Aligned_cols=218 Identities=30% Similarity=0.445 Sum_probs=187.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~----- 126 (712)
|+.+||+|++ ..+.+|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+.+..
T Consensus 2 i~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHH
Confidence 6789999998 4688999999999999999999999999999999999999886 89999999975422
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.-+..||+..+-...||+|.+.++..-..... ...+..+.+++.|...++.+.+.+.+ ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHH
Confidence 2456899999887555699999999864321111 12345566888999999988776643 57999999999999
Q ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 207 LEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 207 ~aL~~------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|.|++ ++++||||||||.||...+..++++.++++++|..|+++.||. +....+||+|++|++||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99985 4569999999999999999999999999999999999999996 5788999999999999999999999
Q ss_pred hHHH
Q 005142 281 AAFE 284 (712)
Q Consensus 281 ~~~~ 284 (712)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
No 199
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=339.70 Aligned_cols=222 Identities=25% Similarity=0.339 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~-- 125 (712)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 358999999988 23679999999999999999999999999999999999864 321248999999986521
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++|++|++.+++ .||+||+.+....+. ....+..++.+.+.++.+++........ +..+..||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHH
Confidence 1356999999998888 699999998754321 1112223345677788887642211111 224568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++|++|+++..|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 58999999996 5788999999999999999999887
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 233 ~~ 234 (252)
T PRK14255 233 QM 234 (252)
T ss_pred HH
Confidence 65
No 200
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=342.77 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|++++... .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 58999999988 335699999999999999999999999999999999999875311 38999999986521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+++ .||+||+.+....+. ..++.+..+++.++++.+++.+ ..++ .+..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~ 153 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSG 153 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCH
Confidence 1246999999999888 799999988754321 1223344566788889888842 3333 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe-----CCe
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGK 272 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~-----~G~ 272 (712)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999999999965 69999999996 67899999999998 599
Q ss_pred EEEecChhhHH
Q 005142 273 TVYFGETSAAF 283 (712)
Q Consensus 273 iv~~G~~~~~~ 283 (712)
+++.|++++..
T Consensus 232 i~~~~~~~~~~ 242 (259)
T PRK14260 232 MVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHHHHh
Confidence 99999988753
No 201
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=377.21 Aligned_cols=218 Identities=23% Similarity=0.358 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 48999999988 3467999999999999999999999999999999999999875 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++||+|++.+++.+||+||+.++..... ... ...++..++++++++.+||.+..++.+ ++||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 12469999999999999999999987542110 001 123445567889999999987777754 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999996 6788999999999999999999887
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 64
No 202
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=340.02 Aligned_cols=221 Identities=24% Similarity=0.348 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 48899999988 23569999999999999999999999999999999999987741 136999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.++|++|++.+++. |++||+.+....+. . ...++..+.+++.++.++|.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-T-TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-C-ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998885 99999998754321 1 112233456777888888753221111 2356789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999995 589999999996 67889999999999999999999876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 233 ~ 233 (251)
T PRK14249 233 I 233 (251)
T ss_pred H
Confidence 5
No 203
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8e-41 Score=315.80 Aligned_cols=211 Identities=31% Similarity=0.412 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~------ 124 (712)
-|+.+++++++.... ..-.||++|++.+++||-+||+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 477888888874432 3467999999999999999999999999999999999998886 999999998742
Q ss_pred ---CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.+.+++|+|+|...++|+||..||+...+.++-. +..+..+...+.|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 2346899999999999999999999988877532 344555678899999999877765 56789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
||+||||++..|++||.||||-+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999976 699999999997 4788999999999999874
No 204
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=343.67 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~-- 125 (712)
..|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 468999999998 3467999999999999999999999999999999999998751 1248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++ .||+||+.+..... ...+.++.+..+.+.++.++|.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999998864322 112344445567788999998754322221 245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 57889999999999999999999876
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 53
No 205
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=339.76 Aligned_cols=217 Identities=26% Similarity=0.354 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 48999999988 33679999999999999999999999999999999999986 211248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+++ .||+||+.+..... .....+..++.++++++.+++.. ..+. .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1356999999998886 69999998865432 11112333456788899999853 2233 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+++|++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 69999999996 5788899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+.++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 88765
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=343.36 Aligned_cols=221 Identities=26% Similarity=0.352 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFY-----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEE-----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 59999999998 2357999999999999999999999999999999999998631 1248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.++|++|++.+++. ||+||+.+..... .....++.++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999988886 9999998875432 11122333466788888888864211111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++++|++|+++..|+.++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 79999999996 57889999999999999999998775
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 4
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.1e-40 Score=341.99 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=169.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468899988731 2356999999999999999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (712)
.+.++|++|++.+++ .||.||+.+.... ....... ....+.++.+ ++....+. .++.|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999998875 5999999874321 1111111 1123334443 33332333 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ +.||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999974 899999999974 55 56999999999999999998
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7654
No 208
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-40 Score=378.93 Aligned_cols=246 Identities=28% Similarity=0.419 Sum_probs=196.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. + ...+ .....++++|+++.++. +++.+|+|+|++++|
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~----~----------~~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP----A----------MPLP-----EPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC----C----------CCCC-----CCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 578999999999976544221 0 0000 01225999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.++|+||||||||||+++|+|.++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999886 8999999987532 23679999999999987 99999985421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
..+.++..+ ..++.++. +++..||.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 122222211 22334443 34556888876 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
.+.+.|+++..+|+|+|+++|+++ ..+.||++++|++|++++.|+.++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998767899999999974 46789999999999999999987654
No 209
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=340.96 Aligned_cols=223 Identities=26% Similarity=0.391 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++++. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 58999999998 23569999999999999999999999999999999999987631 237999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999988888 799999988653321 1123344567888999999854322222 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC-----CeEEE
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-----G~iv~ 275 (712)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 678999999999999 99999
Q ss_pred ecChhhHH
Q 005142 276 FGETSAAF 283 (712)
Q Consensus 276 ~G~~~~~~ 283 (712)
.|++++..
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99998763
No 210
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=342.57 Aligned_cols=222 Identities=20% Similarity=0.331 Sum_probs=180.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~-- 125 (712)
..|+++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +....+|+|.++|++...
T Consensus 23 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 3699999999882 3569999999999999999999999999999999999986 211248999999987521
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.++|++|++.+++. ||+||+.++.... .....+..++.+.+.++.+++.+...... +..+..||||||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHH
Confidence 13569999999988875 9999999875432 11122233455677777775532111111 224568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+.+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 79999999996 5788899999999999999999887
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 252 ~~ 253 (271)
T PRK14238 252 KI 253 (271)
T ss_pred HH
Confidence 65
No 211
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.5e-40 Score=374.51 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999998 3467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+ ..|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 124599999999999999999999885321 1234467889999999987777654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999999988899999999996 578899999999999999999998764
No 212
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=345.10 Aligned_cols=220 Identities=23% Similarity=0.342 Sum_probs=181.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~ 125 (712)
....|+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 36 ~~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 344689999999882 3569999999999999999999999999999999999854 211148999999986421
Q ss_pred -------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCC
Q 005142 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRG 194 (712)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 194 (712)
.++.++|++|++.+++. ||.||+.+...... ..+....++++.++++.+|+. +..++ .+..
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 182 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALG 182 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chhh
Confidence 13569999999988875 99999998754321 112233446677888888874 23333 4568
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 68999999996 5788899999999999999
Q ss_pred EecChhhH
Q 005142 275 YFGETSAA 282 (712)
Q Consensus 275 ~~G~~~~~ 282 (712)
..|+.++.
T Consensus 261 ~~g~~~~~ 268 (286)
T PRK14275 261 EHAPTAQL 268 (286)
T ss_pred EeCCHHHH
Confidence 99998765
No 213
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.2e-40 Score=332.32 Aligned_cols=197 Identities=33% Similarity=0.446 Sum_probs=169.4
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---C-----
Q 005142 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (712)
Q Consensus 54 ~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~---~----- 125 (712)
++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++.. .
T Consensus 1 i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKF-----GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEE-----CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 36788887 2357999999999999999999999999999999999999875 899999998732 1
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+..... .....+..++++++++.+||.+..++.+ ++||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1346999999999999999999999875432 1234445567889999999987777654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999999999999999999877999999999973 45789999875
No 214
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-40 Score=389.37 Aligned_cols=251 Identities=29% Similarity=0.395 Sum_probs=209.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
.|+.|+.+++++++.+|..+..-. .+.. .....-.++++|+++.|+.+ ++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~-----------~~~~----~~~~~G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDST-----------SGGK----LPNVKGDIEFRNVSFAYPTR--PDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCC-----------CCCc----cccceeEEEEeeeEeeCCCC--CCchhhcCCcEEecC
Confidence 578999999999999996653110 0000 11133459999999999743 457899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
|+.+||+|||||||||.+.+|-..++|. +|.|.+||.+++. .++++|.|.|+|.||.. |++|||.|+..
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-- 1089 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-- 1089 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999998642 25789999999999988 99999999821
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
. .+.+|..+. +.+.+ .+|++..||.||+ +..+||||||||++||||+++||+||||||.||+||+++..
T Consensus 1090 --~-vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1090 --E-VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred --C-CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 1 344443322 22223 4789999999998 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.|-+.|.+.. .|+|.|++.|+++ ..+.+|.|+++++|+++++|+-+++..
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999975 5899999999975 478899999999999999999988765
No 215
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.2e-40 Score=334.03 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=179.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+..+ .+.+.+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 6789999987321 11267999999999999999999999999999999999999875 8999999987521
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998754321 123455567789999999998776664 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ + +.++||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 589999999996 3 5689999999999986
No 216
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=364.06 Aligned_cols=226 Identities=28% Similarity=0.349 Sum_probs=194.4
Q ss_pred eeEEEEEeEEEEEEccC------CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005142 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~ 122 (712)
...++++||++.|..++ .+...+++||||++++||++||+|+||||||||.++|+|+.+|. +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 34689999999997532 23467899999999999999999999999999999999999985 8999999976
Q ss_pred cC-------CCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005142 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (712)
Q Consensus 123 ~~-------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (712)
.. ..++.+-+|+||+ .|.|.+||++++.......... ..++.++++.++++.+||... +.+.+++
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1124577888886 6889999999999887654332 256777889999999999842 3345789
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+||||||||++|||||+.+|++|++|||||.||+..+.+|+++|+++.+ .|.|.|++|||. ..+..+||+|.+|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 9999999999999999999999999999999999999999999999987 499999999995 68899999999999999
Q ss_pred EEEecChhhHHH
Q 005142 273 TVYFGETSAAFE 284 (712)
Q Consensus 273 iv~~G~~~~~~~ 284 (712)
+|+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998887653
No 217
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-39 Score=339.38 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCC---C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~i~G~~~~~---~ 126 (712)
.|+++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 68999999987 1469999999999999999999999999999999999987711 138999999987532 1
Q ss_pred cCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCChHHHH
Q 005142 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 127 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSGGerq 201 (712)
.+.++||+|++. +.+.+|+.+++.+.+.... ... ..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 4466799999876543221 111 2356888999999975 2344 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.+++|++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 489999999996 5678899999999999999999987
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 227 ~~ 228 (254)
T PRK10418 227 TL 228 (254)
T ss_pred HH
Confidence 65
No 218
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-40 Score=362.53 Aligned_cols=215 Identities=30% Similarity=0.416 Sum_probs=183.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
-.++|+|+++.+. ++++||+++||+|++||-+||+|+|||||||++|+|.+... . +|+|++||++++.
T Consensus 350 ~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLE 421 (591)
T ss_pred CcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChH
Confidence 3499999999983 44569999999999999999999999999999999999987 3 8999999998542
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
.++.|||||||..||.+ ||.+|+.++.. ..+.++..+. ..+++. .+++..+|.||++ ...|||||
T Consensus 422 SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGer-G~~LSGGe 492 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGER-GLMLSGGE 492 (591)
T ss_pred HhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhc-ccccccch
Confidence 24679999999999988 99999999843 2233332222 223332 4567889999984 46699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||||+||||+++||+|+++|||||.||+++..++++.+++. ..|+|+|++.|+. ...+.||+|++|++|++...|+.
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccH
Confidence 99999999999999999999999999999999999999983 4689999999995 47899999999999999999999
Q ss_pred hhHHH
Q 005142 280 SAAFE 284 (712)
Q Consensus 280 ~~~~~ 284 (712)
+++..
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 98876
No 219
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=350.27 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=186.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~--- 124 (712)
..|+++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|...+. ...+|+|.++|+++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999842 2356999999999999999999999999999999999997531 124899999999853
Q ss_pred ----CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 125 ----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
..++.++||||++.+++ .|++||+.|+.... ... ++...+.+.+.++.++|.+..++.++. .+..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12357999999999886 69999999875321 122 222344577888888886554555554 567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++ ..+.+.||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 69999999996 577888999999999999999999
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8764
No 220
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.7e-39 Score=336.72 Aligned_cols=219 Identities=24% Similarity=0.323 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +.+.+|+|||+++++||+++|+|+||||||||+++|+|+ ++| .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCCh
Confidence 59999999988 235699999999999999999999999999999999997 345 38999999987432
Q ss_pred --CcC-cEEEEecCCCCCCCCCHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 --~~~-~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
..+ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+||. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 378999999999999999999876432110 0111223346678899999996 34555332 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEe
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~ 276 (712)
||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 456565 899999999999999
Q ss_pred cChhhH
Q 005142 277 GETSAA 282 (712)
Q Consensus 277 G~~~~~ 282 (712)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 998744
No 221
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-39 Score=338.24 Aligned_cols=216 Identities=28% Similarity=0.326 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~-----~~~ 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|. +|+|.++|++ ...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 48999999988 2356999999999999999999999999999999999999875 8999999875 321
Q ss_pred ---------CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 005142 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (712)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 193 (712)
..+.++|++|++. +.+.+|+.||+.+..... . .....+..+.++++++.+|+.+ ..++ .++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----LPR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----Cch
Confidence 1235899999974 456679999997643211 1 0112234467889999999963 5555 346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.+++|++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999876 489999999996 57888999999999999
Q ss_pred EEEecChhhH
Q 005142 273 TVYFGETSAA 282 (712)
Q Consensus 273 iv~~G~~~~~ 282 (712)
+++.|++++.
T Consensus 227 i~~~~~~~~~ 236 (253)
T TIGR02323 227 VVESGLTDQV 236 (253)
T ss_pred EEEECCHHHH
Confidence 9999987755
No 222
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.4e-40 Score=380.00 Aligned_cols=245 Identities=29% Similarity=0.420 Sum_probs=194.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++..+.+++.++++.++..+... +..+ .......++++|+++.++ +.+.+|+|+|++++|
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~-------------~~~~---~~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP-------------GAID---LGRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC-------------CCCC---cCCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 35677888888887654432100 0000 001112599999999984 225699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++.
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 433 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--- 433 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999986 9999999987542 24679999999999987 9999998762
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+.++ +.+.++..+ +++..||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+
T Consensus 434 -~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 434 -P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred -C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1 122222 333344433 45567888887 356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..
T Consensus 507 ~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999875 4799999999973 56889999999999999999987664
No 223
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=338.43 Aligned_cols=223 Identities=22% Similarity=0.279 Sum_probs=184.6
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL 125 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~ 125 (712)
.+..+.++++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 5 APIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CCceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 34568899999887 34679999999999999999999999999999999999987511 148999999987421
Q ss_pred -------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.++ .+|+.||+.+...... . ..+..+++++.++.++|.+..+...+ ..++.||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G 153 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGG 153 (261)
T ss_pred cccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHH
Confidence 135699999999888 5899999998754321 1 22334678889999998643322222 256789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe--------C
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------G 270 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~--------~ 270 (712)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|+ +
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~ 231 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRT 231 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCC
Confidence 99999999999999999999999999999999999999999964 79999999996 57889999999996 8
Q ss_pred CeEEEecChhhHH
Q 005142 271 GKTVYFGETSAAF 283 (712)
Q Consensus 271 G~iv~~G~~~~~~ 283 (712)
|++++.|+.++..
T Consensus 232 G~i~~~g~~~~~~ 244 (261)
T PRK14263 232 GYLVEMGPTAQIF 244 (261)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999987653
No 224
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.5e-39 Score=340.29 Aligned_cols=222 Identities=25% Similarity=0.295 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEEcc----CCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 005142 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~- 125 (712)
.|+++||++.+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 48899999988420 001367999999999999999999999999999999999998875 9999999986421
Q ss_pred -------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 005142 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 195 (712)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. +..++ .++.|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccC
Confidence 135699999997 46677899999976533111 123444556789999999996 45555 34579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999864 89999999996 5788899999999999999
Q ss_pred EecChhhHH
Q 005142 275 YFGETSAAF 283 (712)
Q Consensus 275 ~~G~~~~~~ 283 (712)
+.|++++..
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999987643
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.7e-39 Score=325.53 Aligned_cols=188 Identities=56% Similarity=0.868 Sum_probs=164.1
Q ss_pred eEEEEEeEEEEEEccC-CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCC-
Q 005142 50 ARLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G~~~~~- 125 (712)
..|+++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchH
Confidence 3589999999984210 01257999999999999999999999999999999999998 775 8999999987542
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+...+. .||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~ 121 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVS 121 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHH
Confidence 2356999999999999999999997643110 49999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998779999999999755688899999999999998764
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=341.03 Aligned_cols=224 Identities=24% Similarity=0.287 Sum_probs=181.7
Q ss_pred CceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC
Q 005142 47 DVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK 124 (712)
Q Consensus 47 ~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~ 124 (712)
+....|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++..
T Consensus 16 ~~~~~l~~~nl~~~~-----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 16 PDHSVFEVEGVKVFY-----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCCceEEEeeEEEEe-----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 345579999999998 3357999999999999999999999999999999999997531 124899999998742
Q ss_pred C-------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 125 L-------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 125 ~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
. ..+.++|++|++.+++. ||.||+.+....+. .. .+.++.+++.++.+++........ +..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCH
Confidence 1 13569999999988875 99999988654321 11 122344667778877742211111 124568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe--------
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-------- 269 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~-------- 269 (712)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.+++|++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 68999999996 67889999999998
Q ss_pred -CCeEEEecChhhHH
Q 005142 270 -GGKTVYFGETSAAF 283 (712)
Q Consensus 270 -~G~iv~~G~~~~~~ 283 (712)
+|++++.|++++..
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999998763
No 227
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-39 Score=334.25 Aligned_cols=204 Identities=28% Similarity=0.326 Sum_probs=171.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCC---CcCcEEEEecCCC--CCCCCC
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~~lT 144 (712)
+|+|+|+++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|++... ..+.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998871 0128999999987532 1246999999984 556789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP 221 (712)
+.|++.+...... ....+.++++.++++.++|.+ ..++ .+..|||||||||+||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987654321 112334567889999999973 3444 4467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+|||+.++..+.+.|+++++ .|+|||+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999987 489999999996 5788899999999999999999887653
No 228
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-40 Score=337.35 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=172.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999998831 1236999999999999999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (712)
.+.++|++|++.+++ .||+||+.+.... ....+.. ..+.+.++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999875321 1111111 1234455554 45444433 456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||++||++ .++.. ||++++|++|++++.|+.
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999997 45654 999999999999999988
Q ss_pred hhHHH
Q 005142 280 SAAFE 284 (712)
Q Consensus 280 ~~~~~ 284 (712)
++..+
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=341.24 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=180.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~~-- 125 (712)
..|+++||++.+ +.+.+|+|+|++|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 38 ~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 358999999988 33579999999999999999999999999999999999986310 248999999987421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 196 (712)
..+.++|++|++.+++. ||.||+.+....+. ... +..++++++++.++|.+ ..+. .+..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 99999998754321 122 34466888999999853 2333 456899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE-EEeCCeEEE
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~-lL~~G~iv~ 275 (712)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.+++|+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999996 57888999975 679999999
Q ss_pred ecChhhH
Q 005142 276 FGETSAA 282 (712)
Q Consensus 276 ~G~~~~~ 282 (712)
.|++++.
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987764
No 230
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-39 Score=369.60 Aligned_cols=218 Identities=25% Similarity=0.365 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++||++.+ +.+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 6899999988 3467999999999999999999999999999999999998752 138999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCChHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSGGerqRv 203 (712)
..+.++||+|++.+++.+||+||+.+........ ....++..++++++++.+||.+.. ++ .++.|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR-----PVGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccC-----chhhCCHHHHHHH
Confidence 1246999999999999999999998875432111 122344456788999999997654 34 3457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999988899999999996 67889999999999999999988754
No 231
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=335.00 Aligned_cols=221 Identities=22% Similarity=0.318 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.. +....+|+|.+||++...
T Consensus 3 ~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 58899999988 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. |+.||+.+..... .....+..++++.+.++.++|.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHH
Confidence 13569999999998886 9999998864322 11123344567888999999854322112 2345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.+|++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 67899999999999999999999876
Q ss_pred H
Q 005142 282 A 282 (712)
Q Consensus 282 ~ 282 (712)
.
T Consensus 232 ~ 232 (250)
T PRK14266 232 I 232 (250)
T ss_pred H
Confidence 5
No 232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=324.35 Aligned_cols=188 Identities=47% Similarity=0.801 Sum_probs=162.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~ 129 (712)
.|+++|+++.+.... .++.+|+|+|+++++||+++|+||||||||||+++|+|+..+. ..+|+|.++|++... ..+.
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 80 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQRS 80 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhhc
Confidence 588999999984211 1256999999999999999999999999999999999986311 148999999987532 2356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL 209 (712)
++|++|++.+++.+||+||+.+.... + .||||||||++||++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHH
Confidence 99999999999999999999875211 0 4999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC-CeEEEec
Q 005142 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (712)
Q Consensus 210 ~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-G~iv~~G 277 (712)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999877999999999975357889999999998 9999875
No 233
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=369.59 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=183.4
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC------cC
Q 005142 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FG 128 (712)
Q Consensus 55 ~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~------~~ 128 (712)
+||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++.... .+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 6788887 3467999999999999999999999999999999999999885 89999999875321 25
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++||+|++.+++.+||+||+.+............++..++++++++.+++.+..++.+ ..|||||||||+||++
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987642111101123444567889999999987777644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999988899999999996 678899999999999999999987653
No 234
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-39 Score=377.41 Aligned_cols=245 Identities=30% Similarity=0.420 Sum_probs=198.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+++++.+|+.++++.++..+. +..+ . ....-.++++|++++++. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~----~~~~---------~-----~~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDT----GTRA---------I-----ERARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------C-----CCCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 567899999999986554321 0000 0 001125999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 8999999987532 23679999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
...+. +++.++++.+|+ ++..||.+|+. .+.||||||||++|||+++++|++++||||||+||..+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 334455555554 45678999874 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..+++.|+++. +++|+|++||++ ...+.||+|++|++|+++..|+.++..
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 469999999997 467889999999999999999988764
No 235
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-39 Score=385.01 Aligned_cols=246 Identities=27% Similarity=0.438 Sum_probs=197.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+++.|.+|+.++++.++..+.- + ... .. .....++++|++++|.. ..+.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~~---~-----------~~~--~~-~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRSA---G-----------LAA--LP-ELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccCC---C-----------CCC--CC-CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 5788999999999865543210 0 000 00 11235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++.
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~--- 555 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN--- 555 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC---
Confidence 9999999999999999999999999886 8999999998542 24679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+.++ +.+.++..+ +++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 556 -~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 556 -P-GAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred -C-CCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 1 122222 233333333 44567899987 457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999985 5799999999974 356799999999999999999887653
No 236
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.7e-40 Score=337.59 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=169.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~--~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCC--CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 468999998732 12356999999999999999999999999999999999998875 8999999987431 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (712)
.+.++|++|++.+++ .||+||+.+..... ..++..+ .+.+.++.+ ++....+. .++.|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999998876 59999998753211 1111111 112222222 23222222 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 789999999997 4554 8999999999999999988
Q ss_pred hhHHH
Q 005142 280 SAAFE 284 (712)
Q Consensus 280 ~~~~~ 284 (712)
++..+
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 76554
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=367.81 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 48999999998 3457999999999999999999999999999999999999875 8999999987531
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++||+|++.+++.+||.||+.++............+.++++.++++.+||.+..++. +..|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHHHH
Confidence 1356999999999999999999999864211111122344556788999999998666654 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999999988899999999996 57889999999999999987665
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=340.25 Aligned_cols=219 Identities=26% Similarity=0.378 Sum_probs=180.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--c
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--~ 127 (712)
..|+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++.... .
T Consensus 5 ~~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQK 77 (272)
T ss_pred ceEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhcc
Confidence 3599999999883 2357999999999999999999999999999999999999885 89999999875321 2
Q ss_pred CcEEEEecCCCCC--CCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 128 GTAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 128 ~~~~yv~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
+.++|++|++.+. ...+++|++.++...... ......+.+++++++++.+||.+..++.+ ..||||||||++
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ 152 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVF 152 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 3599999997652 234789998754211000 00112233456788899999988777755 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|++++.
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999987899999999996 5788999999877 8999999988764
No 239
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=375.57 Aligned_cols=223 Identities=27% Similarity=0.343 Sum_probs=189.1
Q ss_pred eEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005142 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~ 123 (712)
..|+++||++.|....+ ..+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 35999999998842110 1246999999999999999999999999999999999999875 89999999864
Q ss_pred CC--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 005142 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (712)
Q Consensus 124 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 192 (712)
.. .++.++||+|++ .+++.+||.|++.+..... .....++.++++.++++.+||. +..++ ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWR-----YP 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 21 134699999997 5889999999999865432 1112344557788999999996 45565 45
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
++|||||||||+||+||+.+|++|||||||+|||..++..+++.|++++++ |.|||++|||+ +.+.++||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999874 89999999996 6788999999999999
Q ss_pred eEEEecChhhHH
Q 005142 272 KTVYFGETSAAF 283 (712)
Q Consensus 272 ~iv~~G~~~~~~ 283 (712)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
No 240
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.5e-40 Score=409.76 Aligned_cols=257 Identities=23% Similarity=0.312 Sum_probs=200.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+|++|++|+.++++.+|..+... .+. .... ........|+++||+++|+.+ ++++||+|+|++++|
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~-~~~---------~~~~--~~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRD-NGG---------IRIK--NKNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCC-Ccc---------cccc--cCCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 68899999999998766432100 000 0000 000112359999999999532 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC---------------------------------------------------C
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~---------------------------------------------------~ 110 (712)
|+.+||+||||||||||+++|.|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCC
Q 005142 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL-----VERTIIEMGLQ 180 (712)
Q Consensus 111 ~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~ 180 (712)
..+|+|++||.+++. .++.++||+|++.||+. |++|||.++.. ..+.++..+. +++.++ .|+
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~--~LP 1345 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIE--SLP 1345 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHH--hCc
Confidence 148999999998532 24679999999999976 99999999732 1233332222 222332 467
Q ss_pred ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHH
Q 005142 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVF 259 (712)
Q Consensus 181 ~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~ 259 (712)
+..||.||+ +...||||||||++|||||+++|+|||||||||+||+.++..|.+.|+++. .+++|+|+++|+++ ..
T Consensus 1346 ~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti 1422 (1466)
T PTZ00265 1346 NKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SI 1422 (1466)
T ss_pred cccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HH
Confidence 788999996 556799999999999999999999999999999999999999999999986 36899999999974 46
Q ss_pred hcCCeEEEEeC----CeEE-EecChhhHH
Q 005142 260 ELFDRLYLLSG----GKTV-YFGETSAAF 283 (712)
Q Consensus 260 ~~~D~v~lL~~----G~iv-~~G~~~~~~ 283 (712)
+.||+|++|++ |+++ +.|+.+++.
T Consensus 1423 ~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1423 KRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 78999999999 9955 899988765
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=336.22 Aligned_cols=220 Identities=25% Similarity=0.384 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EecC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G------~~~~ 124 (712)
.++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++| ++..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 49999999998 4567999999999999999999999999999999999998875 65555554 4321
Q ss_pred C-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 125 ~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
. ..+.++|++|++.+++.+||+||+.+..... ....+++.++++.+.++.+++.+...... +..++.|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 158 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQ 158 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHH
Confidence 1 1356899999999999999999999875432 11123455567889999999964211111 12456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++|||+|+.+|++++|||||+|||..++..+.+.|+++++ +.|||++||++ ..+.++||++++|++|+++..|+.
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999965 69999999996 577899999999999999999988
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 237 ~~~~ 240 (257)
T PRK14246 237 NEIF 240 (257)
T ss_pred HHHH
Confidence 7653
No 242
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-39 Score=375.81 Aligned_cols=245 Identities=26% Similarity=0.343 Sum_probs=196.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++++|.+|+.++++.++..+. +.. ..+ .....++++|++++++. +++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~~~---------~~~-----~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----GSE---------PVP-----EGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----CCC---------CCC-----CCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 578899999999986554321 000 000 01124899999998842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
|+.++|+||||||||||+++|+|.++|. +|+|.+||++... .++.++||+|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 9999999997532 23679999999999986 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.++ +++.++..+ +++..||.+|+ ....||||||||++|||+|+++|++++|||||++||+.+
T Consensus 415 ---~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 122222 333333333 45667899987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +|+|+|+++|++. ..+.+|++++|++|+++..|+.++..+
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999885 5899999999973 457799999999999999999887643
No 243
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=337.20 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=179.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 58999999988 3357999999999999999999999999999999999987531 1248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++.+++. ||.||+.+....+ ... .+..++++++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13569999999988885 9999998875432 111 223355667778877743211111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe---------CCe
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~---------~G~ 272 (712)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999996 67899999999998 899
Q ss_pred EEEecChhhHH
Q 005142 273 TVYFGETSAAF 283 (712)
Q Consensus 273 iv~~G~~~~~~ 283 (712)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-38 Score=331.25 Aligned_cols=218 Identities=28% Similarity=0.353 Sum_probs=177.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G~~~~~---- 125 (712)
++++||++.+. .+.+|+|+|+++++|++++|+||||||||||+++|+|+. +|. +|+|.++|++...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 78999999882 357999999999999999999999999999999999995 454 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhh-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL--P-DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
....++|++|++.+++.+|+.+++.+... +.. . ......+..+.+++.++.+++. +..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 12459999999988888888777654321 110 0 0011223356778889999995 34444321 369999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~G 277 (712)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 456666 8999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+.+.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98754
No 245
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-39 Score=333.58 Aligned_cols=212 Identities=29% Similarity=0.419 Sum_probs=170.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 478999999872 2246999999999999999999999999999999999999875 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++. ||+||+.+.... . .. ..+.+.++.+++.+.. ++..+ ..++.||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPN----A-TD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCC----C-CH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13569999999988876 999999875321 1 11 1233334444443222 12222 245789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|||||+||++|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ .++ +.||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999996 589999999997 455 5699999999999999988
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
.++..
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76543
No 246
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-39 Score=324.92 Aligned_cols=197 Identities=25% Similarity=0.363 Sum_probs=170.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
++++|+++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 6889999988 3457999999999999999999999999999999999999885 8999999987532 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||.||+.+....+ . . +..++++++++.+||.+..|+. ++.||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~--~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLH-G--P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhc-C--c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHH
Confidence 56899999999999999999999875432 1 1 2235678899999998766664 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
+|+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++.++++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999996 5676777777776
No 247
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-39 Score=330.25 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|..+|. +|+|.++|++... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999998731 1256999999999999999999999999999999999998875 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCChHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGGer 200 (712)
.+.++|++|++.+++ .||.||+.+.... .. .+.+.+.++.+++.+..+.... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999764221 11 2345667788888765554321 113468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ .|||++||++. .+ +++|++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999765 89999999974 44 899999999999998754
No 248
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.9e-39 Score=373.76 Aligned_cols=248 Identities=25% Similarity=0.335 Sum_probs=193.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.++.+|+.++++.++..+... .+ .. . ......++++|+++.+. +.+.+|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~----~~---------~~--~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPA----DA---------PE--L-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCc----cC---------CC--C-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 46788999999997654422100 00 00 0 01122599999999983 224689999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|.++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 9999999987532 23679999999999875 99999987632
Q ss_pred CCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTLVE-----RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
..+.++..+..+ +.+. .+.+..||.+|+ ....||||||||++|||+|+.+|++|+||||||+||+.++.
T Consensus 435 ---~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~ 508 (585)
T TIGR01192 435 ---GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA 508 (585)
T ss_pred ---CCCHHHHHHHHHHhCcHHHHH--hccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 122333222221 1121 244556888876 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+.+.|+++. +++|+|+++|+++ . .+.+|+|++|++|++++.|+.++..+
T Consensus 509 ~i~~~l~~~~-~~~tvI~isH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 509 RVKNAIDALR-KNRTTFIIAHRLS-T-VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHh-CCCEEEEEEcChH-H-HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999884 4899999999973 4 46799999999999999999877653
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=340.80 Aligned_cols=225 Identities=28% Similarity=0.406 Sum_probs=182.2
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC-
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~- 125 (712)
+..|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 43 DAKLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CceEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3469999999988 3467999999999999999999999999999999999998521 1248999999987431
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccC
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIGN 189 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~ 189 (712)
..+.++|++|++.+++. ||+||+.+....... .... .+..++.+.++++.++|.+..+... +
T Consensus 118 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 195 (305)
T PRK14264 118 GVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-D 195 (305)
T ss_pred cccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-c
Confidence 12569999999988875 999999987542110 0011 1233566888999998854332222 2
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE-EEE
Q 005142 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YLL 268 (712)
Q Consensus 190 ~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v-~lL 268 (712)
..++.||||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.+++|++ ++|
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l 273 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFL 273 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEe
Confidence 35678999999999999999999999999999999999999999999999977 48999999996 5788999997 578
Q ss_pred eCCeEEEecChhhH
Q 005142 269 SGGKTVYFGETSAA 282 (712)
Q Consensus 269 ~~G~iv~~G~~~~~ 282 (712)
++|++++.|++++.
T Consensus 274 ~~G~i~~~g~~~~~ 287 (305)
T PRK14264 274 TGGELVEYDDTDKI 287 (305)
T ss_pred cCCEEEEeCCHHHH
Confidence 99999999998765
No 250
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.5e-39 Score=326.17 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=174.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--Cc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SF 127 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~ 127 (712)
..|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 369999999987 3356999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+|++||+.+....+. . ...+.+++.++.++|.+..++.+ ..||||||||++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHH
Confidence 458999999999999999999988754321 1 12345678899999987777654 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
+++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++.+++|++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999996 678999999999863
No 251
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=331.96 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=184.6
Q ss_pred eEEEEEeEEEEEEcc---------------CCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 005142 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G 114 (712)
++++++||+++++.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 579999999988752 123467999999999999999999999999999999999999885 89
Q ss_pred EEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005142 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (712)
Q Consensus 115 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (712)
+|.++|+ +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.++|.+..++. ++.
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 9999985 356778877778899999998764432 123444455677888888998776664 457
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|.+++++|+|||+++|++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788899999999999999
Q ss_pred EecChhhHHH
Q 005142 275 YFGETSAAFE 284 (712)
Q Consensus 275 ~~G~~~~~~~ 284 (712)
..|+.++..+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999887654
No 252
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5e-39 Score=334.33 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=171.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV 145 (712)
+|+|+|+++++||+++|+||||||||||+++|+|++++ +|+|.++|++... ..+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999998742 7999999987532 12458999999888888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh-------CCCEEEE
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~-------~P~llll 218 (712)
+||+.+.... ....++..++++++++.+||.+..++. ++.||||||||++||++|+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886321 112334456788999999998766664 45799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987899999999996 578899999999999999999987654
No 253
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.6e-39 Score=330.37 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
+.++|+++.+ +.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6778888876 4577999999999999999999999999999999999998875 8999999986421
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
..+...+.+.+||+||+.+..... .....+.++++.++++.++|++..++.+ ++||||||||++||++|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 111234557789999998875432 1233445567888999999988777754 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999996 5788899999999999998765
No 254
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=350.32 Aligned_cols=255 Identities=27% Similarity=0.382 Sum_probs=209.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
.|+.|=+|+.+++...|..+.-.. . ..+...|.++++++.- ++.++.+|+|+||.+.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m~------------------L-P~P~g~L~Ve~l~~~P---Pg~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERMP------------------L-PAPQGALSVERLTAAP---PGQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCCC------------------C-CCCCceeeEeeeeecC---CCCCCcceecceeEecC
Confidence 356777899999988777654110 0 1244579999999832 44668999999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.++|+||||||||||.++|.|..+|. +|.|.+||.+.+. .-+++||.||+-.||+. ||.|||.-...--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999998885 9999999987532 13679999999999998 9999996332110
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~ 236 (712)
.+..+-...+.+.|.|++ +.|++.+||.||+ ....||||||||+++||||-.+|.+++||||-|+||.+....+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 011111223344566665 5688999999997 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 005142 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (712)
Q Consensus 237 L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 287 (712)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++....
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999984 789999999999999999999999887653
No 255
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.8e-39 Score=367.75 Aligned_cols=217 Identities=25% Similarity=0.300 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G--------- 120 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|.+ +|. +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999988 3467999999999999999999999999999999999996 464 89999972
Q ss_pred --------------Eec--------C-------CCcCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 005142 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (712)
Q Consensus 121 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v 170 (712)
.+. . ..++.++||+|+ +.+++.+||+||+.+..... ..+.++.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 12344556788
Q ss_pred HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 005142 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (712)
Q Consensus 171 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (712)
.++++.+||++..++. ++.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999998776664 457999999999999999999999999999999999999999999999976 5899999
Q ss_pred EeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHH
Q 005142 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (712)
Q Consensus 250 ~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 285 (712)
+||++ ..+.++||++++|++|++++.|++++..+.
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 567889999999999999999998876554
No 256
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-39 Score=316.72 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||++... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46899999882 346999999999999999999999999999999999998875 8999999987431 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+|++||+. ||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999973 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.+.+|++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987889999999996 578889999999999874
No 257
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.5e-39 Score=329.82 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=172.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999988 3467999999999999999999999999999999999998875 9999999986432
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++. ||+||+.+...... .. ...++++++++.+++. ...++ .++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHH
Confidence 13568999999988875 99999988644321 11 1234577899999995 34555 44679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe-CCeEEEecC
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~-~G~iv~~G~ 278 (712)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++ +.||++++|. ++..+.+|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999976 489999999996 455 5799999995 555555553
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.3e-39 Score=367.44 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cC--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK-- 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~-G~~---~~-- 124 (712)
.|+++||++.+....++.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 59999999988421112356999999999999999999999999999999999999875 8999996 532 11
Q ss_pred ------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCcccC
Q 005142 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHLR 193 (712)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~d~~vg~~~~~ 193 (712)
...+.++|++|++.+++.+||.||+.+...+. .+.++.++++.++++.+||.+ ..++ .+.
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 426 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YPD 426 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Chh
Confidence 11246999999998999999999998764321 223334567889999999975 2444 456
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999764 89999999996 67889999999999999
Q ss_pred EEEecChhhHH
Q 005142 273 TVYFGETSAAF 283 (712)
Q Consensus 273 iv~~G~~~~~~ 283 (712)
+++.|+++++.
T Consensus 506 i~~~g~~~~~~ 516 (520)
T TIGR03269 506 IVKIGDPEEIV 516 (520)
T ss_pred EEEECCHHHHH
Confidence 99999987654
No 259
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.9e-39 Score=373.57 Aligned_cols=248 Identities=29% Similarity=0.423 Sum_probs=196.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.++.+|+.++++.++..+.... + .+.+ .+....++++|+++.++.+ .++.+|+|+|++++|
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~~----~-------~~~~----~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPAH----P-------KTLP----VPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCCC----C-------ccCC----cCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 477899999999986544221000 0 0000 0112359999999998421 225799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.++|+||||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++|+||++.+|+. |++||+.++.
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~--- 438 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR--- 438 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999885 8999999987532 13579999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+. +.+.+.++..++ ++..||.+|+ ....||||||||++|||+++++|++|+||||||+||+.+
T Consensus 439 -~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 439 -P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred -C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1 1122 234455555554 3456888886 356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..+.+.|+++. +++|+|++||++ +..+.+|+++.|++|+++..|+.++..
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 479999999997 356789999999999999999987653
No 260
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-40 Score=311.35 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||.++| +...+|++||++.+.|+++.|+|.|||||||+|+||.=+..|+ .|.|.+||+.+...
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48889999988 6788999999999999999999999999999999999888886 89999999753210
Q ss_pred --------------cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005142 127 --------------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (712)
Q Consensus 127 --------------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (712)
+.+.++|+|..+|++.+||.||+.-+..--+ ..++.+..++++..|..+||.+..|. ++
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 1246899999999999999999987632211 35678888999999999999888775 66
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ....+...+|+.|++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 78999999999999999999999999999999999999999999999999999999999995 67888999999999999
Q ss_pred EEEecChhhHH
Q 005142 273 TVYFGETSAAF 283 (712)
Q Consensus 273 iv~~G~~~~~~ 283 (712)
+-++|+++++.
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999998764
No 261
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-39 Score=374.58 Aligned_cols=221 Identities=26% Similarity=0.328 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-------
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~------- 123 (712)
.|+++||++.|.... +.+.+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 599999999984211 2357999999999999999999999999999999999999875 89999998632
Q ss_pred ------C------CCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 005142 124 ------K------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (712)
Q Consensus 124 ------~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~ 186 (712)
. .+.+.+|||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||.+ ..+.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0 0123699999997 68888999999999865421 2345556678899999999964 2444
Q ss_pred ccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeE
Q 005142 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (712)
Q Consensus 187 vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v 265 (712)
++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||++||++ .++.++||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 45689999999999999999999999999999999999999999999999864 89999999996 6788999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 005142 266 YLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 266 ~lL~~G~iv~~G~~~~~~ 283 (712)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999987653
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=332.71 Aligned_cols=223 Identities=24% Similarity=0.300 Sum_probs=180.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecC--
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK-- 124 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~i~G~~~~-- 124 (712)
...|+++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|++..
T Consensus 14 ~~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 14 QQKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34589999999983 3579999999999999999999999999999999999986421 24899999997532
Q ss_pred -------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 125 -------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 125 -------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
...+.++|++|++.+++. ||+||+.+...... ...+...++++.+.++.+++.+...... +..+..|||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 164 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSG 164 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCH
Confidence 113568999999999886 99999988653221 1112223456777888887742111111 124567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 69999999996 6788999999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+.++.
T Consensus 243 ~~~~~ 247 (265)
T PRK14252 243 ATDTI 247 (265)
T ss_pred CHHHH
Confidence 98764
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.2e-39 Score=400.47 Aligned_cols=223 Identities=28% Similarity=0.402 Sum_probs=198.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
-.|+++||++.+.. +.+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999831 2367999999999999999999999999999999999999886 8999999987531
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+..|+.+ +.|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHH
Confidence 2356999999999999999999999877654 2344555677889999999998888765 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 285 (712)
|+||+.+|+|+||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|.+|+++..|+++++...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999995 689999999999999999999999998876
Q ss_pred HH
Q 005142 286 FA 287 (712)
Q Consensus 286 f~ 287 (712)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=7.7e-39 Score=322.51 Aligned_cols=194 Identities=28% Similarity=0.361 Sum_probs=169.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|.+... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999987431 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||+||+.+.... . ..++++++++.++|.+..++. +..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD-------H--SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhccc-------c--cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHH
Confidence 5699999999998899999999875321 0 235678899999998776664 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++...+|+++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999988899999999997 4678899999887
No 265
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-39 Score=352.96 Aligned_cols=216 Identities=30% Similarity=0.416 Sum_probs=195.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 126 (712)
.-|+.+|++++| +..++|+||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|.+||++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358899999999 5678999999999999999999999999999999999999986 99999999975421
Q ss_pred ---cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
...|+.|.|+..|+|+|||.||+.++...+.+ .-+.+++.++++.++|+.+|+....++.|+ .||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 24689999999999999999999988665432 335678888999999999999655788776 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|.||+||..+++|+|||||||.|+......+.+.+++|+++|.+||++||.. +|++++||+|.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999988883
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-38 Score=365.43 Aligned_cols=224 Identities=28% Similarity=0.345 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~~--- 125 (712)
.|+++|+++.|... +..+.+|+|+|+++++||++||+||||||||||+++|+|.++|. ...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 48999999998421 11357999999999999999999999999999999999998752 1248999999987421
Q ss_pred ------CcCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 005142 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~d~~vg~~~~~~ 194 (712)
+.+.++||+|++. +++.+|++|++.+...... ..+..+..++++++++.+||.+. .++ .+.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----YPHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----CCcc
Confidence 1146999999974 6677899999886543211 23345566788999999999752 355 4567
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 578889999999999999
Q ss_pred EEecChhhHH
Q 005142 274 VYFGETSAAF 283 (712)
Q Consensus 274 v~~G~~~~~~ 283 (712)
++.|++++..
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999987653
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.7e-39 Score=366.96 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 005142 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~ 124 (712)
.|+++||++.+....+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++ . +|+|.++|++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5999999998842110 13579999999999999999999999999999999999984 3 899999998642
Q ss_pred C--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 005142 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (712)
Q Consensus 125 ~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~ 193 (712)
. .++.++||+|++ .+++.+||.||+.+....... ..+.++.+++++++++.+||. +..++. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124689999996 478889999999987543211 123344556788999999997 355654 46
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999874 89999999996 67889999999999999
Q ss_pred EEEecChhhHH
Q 005142 273 TVYFGETSAAF 283 (712)
Q Consensus 273 iv~~G~~~~~~ 283 (712)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887653
No 268
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=318.63 Aligned_cols=218 Identities=26% Similarity=0.410 Sum_probs=193.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~----- 126 (712)
++++|+++++ +++.+|+++|.++++|.+++|+|||||||||||.+++++++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6789999998 6789999999999999999999999999999999999999876 99999999875321
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++..-|+.++-..+||+|-+.|+.-. ...+...++.+..+++.++.++|++..|+.+ .+||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 35678889999888999999999998432 2233445677788999999999999988754 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+.++++.+.++||||.++||-..+.++|+.|+++++ -|+||+++.||. +.+-.++|+|+-|++|+++..|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999999999997 599999999996 57788999999999999999999998753
No 269
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.2e-38 Score=320.80 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G~~~~~---- 125 (712)
|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. +|. +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999882 357999999999999999999999999999999999984 454 8999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
....++|++|++.+++..|+++++. . ..+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1234999999999888888887760 0 1136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-cCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~-~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+ .+|++++|++|++++.|+.+ +
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~~-~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDKE-L 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccHH-H
Confidence 999999999999999999999999999999999999987789999999997 46666 79999999999999999554 5
Q ss_pred HHHH
Q 005142 283 FEFF 286 (712)
Q Consensus 283 ~~~f 286 (712)
.+.+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4444
No 270
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-39 Score=331.51 Aligned_cols=211 Identities=32% Similarity=0.419 Sum_probs=168.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+. +.+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|. +|+|.+||++... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46889998873 2356999999999999999999999999999999999999875 8999999987431 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGe 199 (712)
.+.++|++|++.+++ .||+||+.+.... ....+ +.+.++..++.+ ..++.+. ..++.|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHH
Confidence 346999999998886 5999999875321 11111 222222223221 2233332 2456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||++||++|+.+|+++||||||+|||+.+...+.+.|+++++ |.|||+++|++ +++ ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STI-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999997 455 45999999999999999887
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
++..
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6543
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=331.42 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 48999999998 3457999999999999999999999999999999999999885 899999873 359
Q ss_pred EEEecCCCCCCC--CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 131 AYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 131 ~yv~Q~~~l~~~--lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
+|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++. +..||||||||++||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHHHHH
Confidence 999999887765 47788765321 111 24567889999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.+|++++|++ +++..|++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999875 89999999996 578899999999964 79999988765
No 272
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.9e-39 Score=371.09 Aligned_cols=220 Identities=31% Similarity=0.412 Sum_probs=174.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+... .+. .... ......++++|++++|. +++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~~-----~~~~-----~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPEGV----VPA-----AGAL-----GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCC----CCC-----Cccc-----CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 57889999999998665432100 000 0000 01123599999999984 224599999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 157 (712)
||.+||+||||||||||+|+|+|.++|+ +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC---
Confidence 9999999999999999999999999986 9999999987532 23579999999999988 99999998631
Q ss_pred CCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005142 158 PDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~ 230 (712)
..+.+ ++.+.++..+ |++..||.+|+ ....||||||||++|||||+++|++|+||||||+||++++
T Consensus 434 --~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 434 --DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 12222 3444444444 45678999997 4467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hqp 254 (712)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999864 579999999984
No 273
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.1e-38 Score=323.10 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=170.7
Q ss_pred EEEEeEEEEEEccC-Cc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecCC
Q 005142 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTKL 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~--G~--~~~~ 125 (712)
|+++||++.+.... ++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 78899999984311 11 257999999999999999999999999999999999999875 8999998 42 2210
Q ss_pred ---------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 005142 126 ---------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (712)
Q Consensus 126 ---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~L 195 (712)
..+.++|++|++.+++.+||+|++.+..... .....+..+++.++++.+||.+. .+. .+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccC
Confidence 1246899999999999999999998864322 12334445678889999999753 344 34679
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987899999999994 56778999998763
No 274
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=314.32 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRY-----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEE-----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 4689999988 2357999999999999999999999999999999999998875 8999999986421
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135699999999998889999987542 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+.+|++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999886 89999999996 57778999999999885
No 275
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-38 Score=319.61 Aligned_cols=197 Identities=28% Similarity=0.370 Sum_probs=168.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~ 128 (712)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+... ..+
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 58999999988 3457999999999999999999999999999999999998875 8999999986432 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|++.+++.+||+||+.+..... . .. .+.+.++++.+||.+..+.. ++.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-~--~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL-G--GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc-C--Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHHHH
Confidence 6899999988888999999998765432 1 11 23478899999998766654 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
|+.+|+++||||||+|||+.+...+.+.|++++++|+|||++||++ .++.+ |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999988899999999996 45554 99988744
No 276
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-38 Score=333.90 Aligned_cols=212 Identities=25% Similarity=0.324 Sum_probs=176.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 3789999999842 23569999999999999999999999999999999999986 3 7999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGG 198 (712)
.++.++||+|++.+|+. ||+||+..... ... +.+.+.++.+||.+.. ++.+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13579999999999986 99999963211 112 3456677788886543 344443 34569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999874 489999999997 4554 599999999999999999
Q ss_pred hhhHHH
Q 005142 279 TSAAFE 284 (712)
Q Consensus 279 ~~~~~~ 284 (712)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 988754
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=361.84 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEecCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~-~~~~~G~I~i~G~~~~~---- 125 (712)
.|+++||++.+.. ++.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++| . +|+|.++|++...
T Consensus 259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 5899999987731 1235699999999999999999999999999999999999873 4 8999999987531
Q ss_pred --CcCcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 --~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++ .+++.+||.||+.+........ ....++.+++++++++.++|. +..|+.+ +.|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 124589999995 4788899999998763211110 012334456788999999996 4666644 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999998
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87653
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-38 Score=323.53 Aligned_cols=207 Identities=25% Similarity=0.369 Sum_probs=169.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999998832 2357999999999999999999999999999999999998875 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 2356999999998876 499999964321 111 23455566666644322 2222 256789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999997 4554 599999999999998876
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.1e-38 Score=317.23 Aligned_cols=193 Identities=27% Similarity=0.358 Sum_probs=164.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999988 3467999999999999999999999999999999999998875 8999999987432 12
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++.+||.||+.+...... . + ++.+.++++.++|.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999989888999999988654321 1 1 245778899999987776644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~l 267 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. -.+|+++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999998889999999999742 34566654
No 280
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.3e-38 Score=313.02 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899999864 899999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 135699999994 57888999999976421 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|++||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987789999999996 578899999999999974
No 281
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=361.74 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999753 23899999999999999999999999999999999999875 8999999986421
Q ss_pred -CcCcEEEEecC---CCCCCCCCHHHHHHHHhhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 005142 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (712)
Q Consensus 126 -~~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 194 (712)
..+.++||+|+ ..+++.+||.||+.+....+ ... . ....+.++.++++++.+||. +..++.+ ..
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46888999999998764321 000 0 11223345678899999996 6677754 57
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999996 6788999999999999999
Q ss_pred EecCh
Q 005142 275 YFGET 279 (712)
Q Consensus 275 ~~G~~ 279 (712)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 282
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=347.16 Aligned_cols=214 Identities=21% Similarity=0.299 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.++++||++.+.. +..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~--~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD--GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCC--CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 5889999887732 12357999999999999999999999999999999999999885 89999999752
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
++.+...+.+.+||+||+.+..... ..+.++..++++++++.++|.+..++. ++.||||||||++||++|+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHH
Confidence 2233445667789999998754322 123445556778899999998777764 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHH
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 286 (712)
.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++..-|
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999999999999999999987899999999996 5788999999999999999999998876543
No 283
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-38 Score=326.36 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=168.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
-.++++|+++.+... +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence 358999999998421 1246999999999999999999999999999999999999885 8999999986421
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
..+.++|++|++.+++ .||+||+.++..............+..+++.++.+ |+++..+. .++.||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qr 158 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQR 158 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHH
Confidence 1356999999998876 59999998754311000000011112356778887 67655554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|+||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++ +.+|++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL-STV-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHH-HhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999865 68999999997 456 45999999999874
No 284
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=296.99 Aligned_cols=214 Identities=27% Similarity=0.378 Sum_probs=190.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.+.++|+++.| +..++|.||+++.+.||.+.++||||+|||||++.|.=+..|. +|+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCcc
Confidence 57889999988 5678999999999999999999999999999999998776665 8999998864211
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
.++.+|.|+|.-+++|.+||.|||..+.. +. .++++++.+.++.++|+.+.|.+.+|. ++-.|||||
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggq 146 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQ 146 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccch
Confidence 13568999999999999999999987632 22 246788888999999999999999987 556799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||.. ....+.+.+|+.|.+|++++.|+.
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999999999999999999995 567789999999999999999987
Q ss_pred h
Q 005142 280 S 280 (712)
Q Consensus 280 ~ 280 (712)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 5
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.7e-38 Score=358.61 Aligned_cols=208 Identities=23% Similarity=0.247 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+ +.+.+|+|+|+++++|++++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 48999999998 2356999999999999999999999999999999999999885 8999999875321
Q ss_pred CcCcEEEEecCCCC--C-C-----CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 126 SFGTAAYVTQDDNL--I-G-----TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l--~-~-----~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
..+.++|++|++.+ + + .+||+|++.+. .+.+++++++++.+||++..++.+ ..|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 12458999998642 1 1 46888887532 122456888999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+.||++++|++|++++.|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988899999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
++++..
T Consensus 218 ~~~~~~ 223 (490)
T PRK10938 218 EREEIL 223 (490)
T ss_pred CHHHHh
Confidence 887653
No 286
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=343.34 Aligned_cols=246 Identities=26% Similarity=0.367 Sum_probs=199.5
Q ss_pred HHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEE
Q 005142 6 ASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLT 85 (712)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 85 (712)
-.+|+++++..+|...... .+..-...+-.++|+|+++.|. .++++|+||||++.||+.+
T Consensus 508 DmEnmfdllkee~eVvd~P----------------~a~pl~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLP----------------GAPPLKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHhhcCchhhcCC----------------CCCCccccCCeEEEEEeEEecC----CCCceeecceEEecCCcEE
Confidence 3578899998777753211 1111112345699999999985 4688999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005142 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (712)
Q Consensus 86 aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (712)
||+||||+||||++++|....+.+ +|.|.+||++++. .++.||.||||..+|++ |+..|+.|+..-
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~----- 638 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPS----- 638 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCC-----
Confidence 999999999999999999988765 9999999998642 24679999999999988 999999987432
Q ss_pred CCHHHHHHH--HHHHH-HHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005142 161 MPWSEKRTL--VERTI-IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (712)
Q Consensus 161 ~~~~~~~~~--v~~~l-~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L 237 (712)
.+.++..+. +..+- +.+++++..+|+||++..+ |||||||||+|||+++++|.+++|||.||+||..+...|-..|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 122332221 11111 2368899999999986554 9999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 238 ~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+++. ++|.|++.|..+. .-.+|.|+++++|+|++.|.-+|++.
T Consensus 718 ~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 99976 6899999999753 45699999999999999999887653
No 287
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.1e-38 Score=362.50 Aligned_cols=229 Identities=30% Similarity=0.414 Sum_probs=182.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.++.+|+.++++.++.... .. ..+ . ...-.++++|++++++. .++.+|+|+|++++|
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~-----~~---------~~~--~--~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG-----KA---------PVT--A--APAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC-----Cc---------CCC--C--CCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 578899999999974432110 00 000 0 01125999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999997532 24679999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+. +.+.+.++..++ ++..||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234445555544 4567899987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
+..+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 999999999885 5799999999973 45789999875
No 288
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=306.39 Aligned_cols=231 Identities=27% Similarity=0.390 Sum_probs=200.0
Q ss_pred eEEEEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 50 ARLTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
..|+++||++++. + +.||++||++|++||+.|||||||||||||.++|+|.-.. ..++|+|+++|+++..
T Consensus 2 ~~L~I~dLhv~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCH
Confidence 3689999999993 3 5899999999999999999999999999999999998543 3579999999998532
Q ss_pred --C-cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHH
Q 005142 126 --S-FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 --~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerq 201 (712)
+ +..+..-+|.|.=+|..|+.+.|..+.+.+........+....+++.++.+++.. .+++.+. -|+||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHH
Confidence 1 3457788999999999999999998876643321113456678889999999986 5677665 389999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC--CeEEEEeCCeEEEecCh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGET 279 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~--D~v~lL~~G~iv~~G~~ 279 (712)
|..|+..++.+|++.+||||-||||..+-..|.+.+.+++..|.+++++||. ..+.++. |++.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy--~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY--QRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH--HHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999998 4688877 99999999999999999
Q ss_pred hhHHHHHHHcCCCC
Q 005142 280 SAAFEFFAQAGFPC 293 (712)
Q Consensus 280 ~~~~~~f~~~g~~~ 293 (712)
++.+.++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 7888888888865
No 289
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.5e-38 Score=393.70 Aligned_cols=249 Identities=18% Similarity=0.248 Sum_probs=198.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.|+++.+++.+... .+..| +. ..+..-.|+++|++++|.. +.+.+|+|+|++|+|
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~-~~~~~----------~~--~~p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAII-ENNRP----------VS--GWPSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccc-cCCCC----------CC--CCCCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 45788999999998666533210 00000 00 0011225999999999932 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++|||||+.+|+. |+||||.+..
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999886 8999999998532 24679999999999987 9999997542
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.+ .+.+.++..+| ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+++
T Consensus 1335 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 12222 34444554444 4567999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
...|.+.|++.. +++|+|+++|+++ ....||+|++|++|++++.|+++++.+
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 4799999999974 355699999999999999999998753
No 290
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.3e-38 Score=395.35 Aligned_cols=249 Identities=20% Similarity=0.244 Sum_probs=198.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.+++.+.... +..| .. .-+..-.|+++|++++|.. +.+.+|+|+|++|+|
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~-~~~~----------~~--~wp~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIE-NNRP----------PP--GWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCccccccc-CCCC----------CC--CCCCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 457899999999976655321100 0000 00 0011235999999999942 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .++++++||||+.+|+. |+||||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999886 8999999998642 24679999999999988 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.+ .+.++++..+ +++..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 11222 2344444443 34678999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
...|.+.|++.. +++|+|+++|+++ ....||+|++|++|+++++|+++++.+
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999875 4799999999974 345699999999999999999998764
No 291
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.3e-38 Score=320.96 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=164.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCC--CCCCHHHHHHHHhh
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~ 154 (712)
+++++||+++|+||||||||||+++|+|.+++. +|+|.+||++.....+.++|++|++.++ ..+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468899999999999999999999999998885 8999999987543345799999998764 34799999987532
Q ss_pred hcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005142 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (712)
Q Consensus 155 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i 233 (712)
.... ......+.++++.++++.+++++..++.+ .+||||||||++||++|+.+|+++|+||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00112233456888999999987766644 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 234 ~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
.+.|++++++|+|+|++||++ +++.++||+++++ +|++++.|+.++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999987899999999996 5788999999999 89999999987653
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.3e-38 Score=308.48 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.. ..+.+++|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468899998731 2246999999999999999999999999999999999999885 8999999987432 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999987 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+ +.||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987899999999997 455 68999999999974
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.2e-38 Score=312.92 Aligned_cols=176 Identities=34% Similarity=0.491 Sum_probs=151.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------CcCcEEEEecCCC--
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~-- 138 (712)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999875 8999999987521 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEE
Q 005142 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (712)
Q Consensus 139 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llll 218 (712)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..++. +..||||||||++||++|+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 469999999865432 123444556788999999998777764 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999999888999999999963
No 294
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.6e-38 Score=314.58 Aligned_cols=192 Identities=22% Similarity=0.277 Sum_probs=164.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++... ..
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 7899999988 3467999999999999999999999999999999999999885 8999999986431 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+ ..||||||||++||+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999998888899999999864211 11 246788999999977666544 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ..+.+|...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999999878999999999963 345677544
No 295
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-39 Score=323.17 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=172.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---------CCCcCcEEEEecCCCCCCCCC
Q 005142 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (712)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 144 (712)
++++..+.-.++||-|+||||||||+|+|+|+..|+ +|.|.+||+.. ....+++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776799999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsg 224 (712)
|+.||.|+.... .....+++.+.+|++|..+. +|..|||||||||+|||||+++|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985432 23457788899999999987 5668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||-....+++-.|++|+++ +..|+.+||.+ .|+.+++|+|++|.+|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999874 78999999995 79999999999999999999999988754
No 296
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.2e-38 Score=309.85 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~~ 127 (712)
|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++... ..
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899998832 1236999999999999999999999999999999999998875 8999999986421 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56999999998876 5999987 2469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++ ++.|||+++|++. ++ +.+|++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 5899999999974 55 579999999999998764
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=324.86 Aligned_cols=227 Identities=32% Similarity=0.427 Sum_probs=199.8
Q ss_pred ceeEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 48 VSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
.+..|+.+|+++.|..+++ ....++++||+++++||.++|+|+||||||||-.+|.+++++ +|+|.++|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCc
Confidence 5678999999999976532 235689999999999999999999999999999999999876 699999999
Q ss_pred ecCC--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005142 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (712)
Q Consensus 122 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (712)
++.. .++.+-.|+||+ .|-|.+||.|-+..+....-| ..+.+++.+++.+.|+++||+... -+++
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RY 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRY 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcC
Confidence 7531 135688999997 588999999999999877644 467889999999999999996432 2348
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
+++.|||||||++||||++.+|++++||||||.||-.-+.+|+++|++|.+ .|.+-++++||. .-+..+||+|++|++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~ 502 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRD 502 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeC
Confidence 899999999999999999999999999999999999999999999999976 689999999995 678899999999999
Q ss_pred CeEEEecChhhHHH
Q 005142 271 GKTVYFGETSAAFE 284 (712)
Q Consensus 271 G~iv~~G~~~~~~~ 284 (712)
|+||++|+++++++
T Consensus 503 GkiVE~G~~~~if~ 516 (534)
T COG4172 503 GKIVEQGPTEAVFA 516 (534)
T ss_pred CEEeeeCCHHHHhc
Confidence 99999999987754
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9e-38 Score=356.31 Aligned_cols=221 Identities=22% Similarity=0.350 Sum_probs=183.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++|+++.+.. ++.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCcccccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 36999999987621 11346999999999999999999999999999999999998751 28999999987531
Q ss_pred --CcCcEEEEecCC---CCCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCh
Q 005142 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (712)
Q Consensus 126 --~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSG 197 (712)
.++.++||+|+. .+++.+||+||+.++..-... ......+.++.++++++.++|.+ ..++.+ +.|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCH
Confidence 135689999995 588999999999876321111 01123344567889999999964 456644 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999877
Q ss_pred Chh
Q 005142 278 ETS 280 (712)
Q Consensus 278 ~~~ 280 (712)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
No 299
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.9e-38 Score=326.58 Aligned_cols=212 Identities=22% Similarity=0.278 Sum_probs=169.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|++++. +|+|.++|++...
T Consensus 19 ~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 19 EIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHT 92 (257)
T ss_pred eEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHH
Confidence 5999999999832 1256999999999999999999999999999999999998875 8999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGG 198 (712)
..+.++|++|++.+++. |++||+..... ... ..+.+.++..++.+ ..++.++. .++.||||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G 160 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK------CTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVG 160 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC------CCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHH
Confidence 13569999999988875 99999853211 111 11222333333322 12333332 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++. .+|++++|++|++++.|+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~ 237 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDT 237 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 4899999999974 555 499999999999999999
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
+++..
T Consensus 238 ~~~~~ 242 (257)
T cd03288 238 PENLL 242 (257)
T ss_pred HHHHH
Confidence 87654
No 300
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-37 Score=312.81 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4889999998832 1246999999999999999999999999999999999998875 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999996531 1111 12333333 1 22 456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. ++.. +|++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 4899999999974 5544 999999999999988763
No 301
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=354.12 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++++|+++ .+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|++...
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 588888873 2699999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEecCC---CCCCCCCHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
.++.++||+|++ .+++.+||.||+.+....... .....++.+++++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 124699999995 578889999999875321110 0122334456788999999995 5566644 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6789999999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87654
No 302
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=354.58 Aligned_cols=214 Identities=21% Similarity=0.314 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888872 24899999999999999999999999999999999999875 89999999875321
Q ss_pred --cCcEEEEecCC---CCCCCCCHHHHHHHHhhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
.+.++|++|++ .+++.+||.||+.+...... +.. ....+.++.++++++.+++. +..++.+ ..|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCH
Confidence 24689999996 48889999999987542211 001 11223345688899999994 5677755 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 6789999999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+++++
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 87653
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-37 Score=313.20 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=155.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
++++||++.+..+....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999988321000136999999999999999999999999999999999998885 89999998 489
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHH
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvs 204 (712)
|++|++.+++ .|++||+.+.... ..+ ...+.++.+++.+ ..++.+.. .+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHH
Confidence 9999998885 5999999875321 111 1222233333321 12333332 46789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
||++|+.+|+++++||||+|||+.++..+.+ +++++.++|.|||+++|++ ..+.. +|++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4666766789999999997 45555 99999999985
No 304
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=334.28 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.++.+|+++.| +...+++|||+++++||++||+|+||||||||+++|.|.+.|+ +|+|.++|++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 58999999999 4678999999999999999999999999999999999999997 99999999975421
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
+..||.|.|+..|++++||.||+..+..-........++.+++++++.+..||+-..|.+|+ .||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24589999999999999999999998654322234677788899999999999888888776 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|-++|..+|++|||||||+-|-|....++++.|++++++|+|||++||.. .|+.++||++.+|++|+++-.-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999986655
No 305
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-37 Score=308.47 Aligned_cols=174 Identities=38% Similarity=0.563 Sum_probs=149.3
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----c
Q 005142 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (712)
Q Consensus 53 ~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~ 127 (712)
+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 4688998872 356999999999999999999999999999999999999885 89999999875311 1
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.++|++| +++.+||.+..++ .++.||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHH
Confidence 23556655 5666777665555 34579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999876 89999999996 5778999999999999998654
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.2e-37 Score=353.63 Aligned_cols=232 Identities=22% Similarity=0.224 Sum_probs=183.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. . +..+ .. ....++++|+++.++ +++.+|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~-------------~~~~--~~--~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P-------------RPQA--FP--DWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c-------------cccc--cC--cCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 577899999998764332110 0 0000 00 112599999999984 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|+|.++|+ +|+|.+||++.+. .++.++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999886 9999999998542 23679999999999886 88887 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~--~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~ 234 (712)
+ ...++.+++.++.+++.+..+. ++. ....||||||||++|||||+++|++|+||||||+||+.++..+.
T Consensus 418 -~-----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1123456788888888754332 221 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 235 ~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
+.|.+..+ .|+|+|+++|++ +..+.+|++++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99986644 589999999997 35788999999999999866
No 307
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.6e-37 Score=387.56 Aligned_cols=249 Identities=20% Similarity=0.264 Sum_probs=198.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. ...+..| ...| +..-.|+++|++++|.. +.+.+|+|||++|+|
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~-~~~~~~~--~~~w----------p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPW-QIQETAP--PSGW----------PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccc-cccCCCC--CCCC----------CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 467899999999976654321 0000000 0000 11235999999999942 224699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.+++. .++.++|||||+.+|+. |+||||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999886 8999999998642 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.+ .+.++++..++ ++..||.||+ ....||||||||++|||||+++|+||+||||||+||+++
T Consensus 1385 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 12232 24445555544 3567999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
...|.+.|++.. +++|||+++|+++ ....+|+|++|++|+++++|+++++.+
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 4799999999974 456799999999999999999988764
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-37 Score=384.43 Aligned_cols=244 Identities=26% Similarity=0.395 Sum_probs=189.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
.|.+|++||.++++.+|..+. ...+ .. ... . ..|+++||++.|... .++.+|+|+|+++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~~-----------~~---~~~-~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDDG-----------KK---LKD-I-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCCC-----------cc---CCC-C-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 588999999999988776432 0000 00 000 1 159999999998421 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~-G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
||++||+||||||||||+++|+|+++|. +|+|++| |.++.. .++.+|||+|++.+|+. ||+||+.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999986 9999995 565421 23579999999999986 999999987421
Q ss_pred cC----------CC-----C------------------------C---------CHHHHHHHHHHHHHHcCC-------C
Q 005142 156 RL----------PD-----K------------------------M---------PWSEKRTLVERTIIEMGL-------Q 180 (712)
Q Consensus 156 ~~----------~~-----~------------------------~---------~~~~~~~~v~~~l~~lgL-------~ 180 (712)
.. +. . . ......+.+.++++.+++ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112345566666554 4
Q ss_pred ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHH
Q 005142 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (712)
Q Consensus 181 ~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~ 259 (712)
+..||.+|+ .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ . .
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~-i 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-T-I 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-H-H
Confidence 567888986 4678999999999999999999999999999999999999999999999976 5899999999974 4 4
Q ss_pred hcCCeEEEEeCC
Q 005142 260 ELFDRLYLLSGG 271 (712)
Q Consensus 260 ~~~D~v~lL~~G 271 (712)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
No 309
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.6e-37 Score=351.03 Aligned_cols=212 Identities=23% Similarity=0.309 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++|++. .+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588898872 1599999999999999999999999999999999999875 89999999875321
Q ss_pred --cCcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHH
Q 005142 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGer 200 (712)
++.++|++|++ .+++.+|+.||+...............+.++.++++++.+||+ +..++.+ +.||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 4788899999986431111110011223345688999999997 6667654 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ .++.++||++++|++|++++.|.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6789999999999999999988775
Q ss_pred h
Q 005142 281 A 281 (712)
Q Consensus 281 ~ 281 (712)
+
T Consensus 489 ~ 489 (510)
T PRK15439 489 A 489 (510)
T ss_pred c
Confidence 4
No 310
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.5e-37 Score=330.94 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.1
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCH
Q 005142 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (712)
Q Consensus 87 I~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 163 (712)
|+|||||||||||++|+|+++|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999885 8999999987532 2357999999999999999999999986532 2234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005142 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (712)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (712)
++.+++++++++.++|.+..++. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 45567789999999998877764 4679999999999999999999999999999999999999999999999764
Q ss_pred -CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 244 -g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+|+|++||++ .++.++||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999996 6789999999999999999999998764
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.2e-36 Score=318.37 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 345899999984 246999999999999999999999999999999999999885 89999988
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerq 201 (712)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875321 11 11222333334322 22333332 45689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
|++||++|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||+++|++. ++ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 4799999999974 44 689999999999999999987
Q ss_pred hHH
Q 005142 281 AAF 283 (712)
Q Consensus 281 ~~~ 283 (712)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 764
No 312
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.4e-36 Score=350.35 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=170.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..++++|+++.+..+++..+.+|+|+|+++++||.+||+||||||||||+++|+|.++|+ +|+|.+||.+.+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999998532111246999999999999999999999999999999999999886 9999999998642
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCcccCCCChHHHHHH
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRV 203 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v-g~~~~~~LSGGerqRv 203 (712)
.++.++||+|++.+|+. |+++|+. + ...++.+.+.++.+++.+..+... |......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999877 8888841 1 112345677888888865433221 1112357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
+|||+|+.+|++++|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 46567899999999974 5689999999999999853
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-36 Score=296.35 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
|+++|+++.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999883 357999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1235777777 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
|++|+.+|++++|||||+|||..++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999996 56888999999999999875
No 314
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2e-36 Score=381.23 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=182.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
-.|+++|++++|.. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|+++|. +|+|++||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999942 2346999999999999999999999999999999999999886 8999999998642
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCh
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSG 197 (712)
.++.++||||++.+|+. ||+|||.... ..+. +.+.+.++..+| ++..||.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999987 9999996421 1222 345556666555 4567999987 4567999
Q ss_pred HHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 198 GerqRvsIA~aL~~~-P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
|||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999998864 4799999999973 5678999999999999999
Q ss_pred cChhhHHH
Q 005142 277 GETSAAFE 284 (712)
Q Consensus 277 G~~~~~~~ 284 (712)
|+++++.+
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99998753
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-37 Score=299.79 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
|+++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998732 1136999999999999999999999999999999999999875 8999999987431 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+.++|++|++.+++ .|+.||+ ||||||||++||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 346899999998876 5998886 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++ .++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999964 79999999997 46665 99999999885
No 316
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-36 Score=308.84 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=158.1
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 005142 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (712)
Q Consensus 53 ~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------- 125 (712)
.+.|+++.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4567777763 2357999999999999999999999999999999999999875 8999999976421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LS 196 (712)
.++.++|++|++.++ ..|++||+.+.... .. +...++++.++|.+.. ++..+ ..+..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCC
Confidence 124689999999887 46999999875321 11 1223445555554322 22222 2467899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
||||||++||++|+.+|+++||||||+|||+.++..+++ .++.+.++|.|+|+++|++. .+ ..+|++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 67777667899999999974 45 5799999999874
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.2e-36 Score=295.66 Aligned_cols=164 Identities=33% Similarity=0.483 Sum_probs=144.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
|+++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999873 2256999999999999999999999999999999999998875 899999874 5689
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
|++|++.++ ..||+||+.+. .++.||||||||++|||+|+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998642 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++. ..+.+|++++|++|.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999886 589999999973 457999999998653
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=350.18 Aligned_cols=219 Identities=26% Similarity=0.351 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 58999999998421 12356999999999999999999999999999999999999885 8999999987532
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.++|++|+..+++.+|+.||+.+..... ....++.++++.++++.+||.+..|+.+ +.|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1356999999999999999999999865432 2234556678899999999988777654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. . .+.||++++|++|++++.|++++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-V-AAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-H-HHhCCEEEEEECCEEEeecCccc
Confidence 999999999999999999999999999999999999999878999999999963 4 46799999999999999999987
Q ss_pred HH
Q 005142 282 AF 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 230 ~~ 231 (648)
T PRK10535 230 KV 231 (648)
T ss_pred cc
Confidence 64
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=346.66 Aligned_cols=210 Identities=22% Similarity=0.333 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
|+++|+++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999988 3467999999999999999999999999999999999999885 899999873 3589
Q ss_pred EEecCCCCCCCCCHHHHHHHHhh-h-----------cCCC---C--------------CCHHHHHHHHHHHHHHcCCCcc
Q 005142 132 YVTQDDNLIGTLTVRETISYSAR-L-----------RLPD---K--------------MPWSEKRTLVERTIIEMGLQDC 182 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~-l-----------~~~~---~--------------~~~~~~~~~v~~~l~~lgL~~~ 182 (712)
|++|++.+++.+||+|++.++.. . ..+. . +...+.+++++++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999987531 0 0000 0 0001234568889999999754
Q ss_pred c-cccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc
Q 005142 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (712)
Q Consensus 183 ~-d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~ 261 (712)
. +. .+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++ ..+.++
T Consensus 148 ~~~~-----~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYG-----LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 33 3457999999999999999999999999999999999999999999863 589999999996 578899
Q ss_pred CCeEEEEeCCeE-EEecChhhHHH
Q 005142 262 FDRLYLLSGGKT-VYFGETSAAFE 284 (712)
Q Consensus 262 ~D~v~lL~~G~i-v~~G~~~~~~~ 284 (712)
||++++|++|++ ++.|+.++..+
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999 58898876543
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-36 Score=301.17 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=159.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~~ 130 (712)
|+++|+++++. .+.+++ +|+++++||+++|+|+||||||||+++|+|..+|. +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 78999999882 344555 99999999999999999999999999999998885 8999999987532 22458
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
+|++|+..+++.+||+||+.+..... . ..++++++++.+++.+..++. ++.||||||||++||++|+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998864322 0 124567788999998766664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v 265 (712)
.+|++++|||||+|||+.++..+.+.|++..++|.|+|+++|++. + .+.+|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-c-cchhhee
Confidence 999999999999999999999999999877778899999999974 3 3446654
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=316.49 Aligned_cols=227 Identities=27% Similarity=0.363 Sum_probs=198.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~i~G~~~~---- 124 (712)
-|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.+.|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 489999999996543 4678999999999999999999999999999999999998752 345899999998731
Q ss_pred -----CCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 125 -----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
.+..+|+.++|++ .|.|-.|+.+-+....+++ .++++++.++++.++|+.+|+.+..... +.++++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1235799999997 5778889999888877665 3567888889999999999998765433 348999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
||||||.||+||+.+|++||.||||++||..-+.+|+++|++|.+ .|..++++|||. .-+.+++|+|++|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 999999999999999999999999999999999999999999976 699999999995 678899999999999999999
Q ss_pred cChhhHH
Q 005142 277 GETSAAF 283 (712)
Q Consensus 277 G~~~~~~ 283 (712)
|+++++.
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9988765
No 322
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.5e-36 Score=376.18 Aligned_cols=213 Identities=25% Similarity=0.316 Sum_probs=181.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
-.|+++||+++|.. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|+++ . +|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999942 34679999999999999999999999999999999999985 3 8999999998642
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCh
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSG 197 (712)
.++.++||||++.+|+. ||||||.... ..+ ++.+.++++..+| ++..|+.||+ ....|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 24679999999999998 9999995421 112 2445666776665 3467999986 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999874 4799999999974 45679999999999999999
Q ss_pred ChhhHHH
Q 005142 278 ETSAAFE 284 (712)
Q Consensus 278 ~~~~~~~ 284 (712)
+++++.+
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9988763
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.3e-36 Score=306.12 Aligned_cols=195 Identities=21% Similarity=0.224 Sum_probs=161.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
++|+|||+++++||+++|+||||||||||+++|+|.++|. +|+|. ++|... .+.|++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 4799999999999999999999999999999999998875 89997 777532 13345678899999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
+.+.+.... ...++. .+.+.+.++|+...++.+ +.||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765431 222222 223345567777777654 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005142 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (712)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 288 (712)
++..+.+.|.+..+ ++|+|+++|++ .++.++||++++|++|++++.|+.+++..++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999997 567889999999999999999999998877654
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-36 Score=345.13 Aligned_cols=210 Identities=24% Similarity=0.309 Sum_probs=175.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.+. +++.+|+|+||+|++|++++|+|||||||||||++|+|.++|. +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3699999999982 1467999999999999999999999999999999999999885 899999752 45
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhh-c------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMP--------------------WSEKRTLVERTIIE 176 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l-~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (712)
+|||+|++.+++.+||.||+.++... . ...... ..+..++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 89999999999999999999875320 0 000000 00123567888999
Q ss_pred cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 177 lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
+||.. .++. +..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++||++ +
T Consensus 152 ~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 5554 45799999999999999999999999999999999999999999998873 5999999996 6
Q ss_pred HHHhcCCeEEEEeCCeEE-EecChhhH
Q 005142 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (712)
Q Consensus 257 ~i~~~~D~v~lL~~G~iv-~~G~~~~~ 282 (712)
++.+++|+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 88887754
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=291.74 Aligned_cols=192 Identities=25% Similarity=0.435 Sum_probs=167.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCC
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~ 141 (712)
.+..+|+|+|+.+.+||..+|.||||||||||+|+++.+..|+ +|++++.|++... .+..++|+.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4577999999999999999999999999999999999999886 9999999998542 2457999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005142 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (712)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDE 220 (712)
. ||++|+.|..+++... ..+....+.|+.++|.+. .++ .+..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 9999999987765321 123566788999999764 333 445799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|||+||..++..|-+.|.++. .+++.++-+||++ .+..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999986 5789999999997 567899999999999876
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=340.57 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=176.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 126 (712)
..|+++||++.. +.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 358999998852 35999999999999999999999999999999999999885 89999999875321
Q ss_pred ---cCcEEEEecCC---CCCCCCCHHHHHHHHh-hhcCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 005142 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP-DK-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (712)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~-~l~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 196 (712)
.+.++|++|+. .+++.+|+.+|..+.. ..... .. ....+.++.++++++.+++. +..++. +.+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 24489999985 4788888887743321 00000 01 12233456788899999995 345654 45799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999996 678899999999999999987
Q ss_pred cChh
Q 005142 277 GETS 280 (712)
Q Consensus 277 G~~~ 280 (712)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7653
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=291.80 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=190.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecCC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G-~~~~~--- 125 (712)
..|+.+||++++ +...+|+|+||++.+||+-+|+|||||||||++++|+|..+|. +|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 468999999999 5688999999999999999999999999999999999998885 89999999 44321
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
.+..||--+|.+..|..+||+|||..+.+...+- .....+.+.+++++|...||.+..|..-+ .||.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 1345888999999999999999999986532110 01134456789999999999998887655 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||++.|++-++++|++|++|||++|+--+...+.-++|+.++. +++|+++.||. ..+.+++|+|.+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999986 58999999995 7899999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988764
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-35 Score=342.48 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..++++||++.+. +.+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|. +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3689999999982 1457999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhh-c------------CCCCCCHH--------------------HHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMPWS--------------------EKRTLVERTIIE 176 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l-~------------~~~~~~~~--------------------~~~~~v~~~l~~ 176 (712)
++||+|++.+++.+||+||+.++... + ........ +...++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 00000000 012456677888
Q ss_pred cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 177 lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
+|+.. .++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4543 4579999999999999999999999999999999999999999999876 35999999996 6
Q ss_pred HHHhcCCeEEEEeCCeEE-EecChhhHHH
Q 005142 257 EVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (712)
Q Consensus 257 ~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 284 (712)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 788899999999999976 7788776543
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.8e-36 Score=340.61 Aligned_cols=214 Identities=23% Similarity=0.337 Sum_probs=172.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 359999999998 3356999999999999999999999999999999999976541 38999999975311
Q ss_pred --CcCcEEEEecCCCCCC--CCCHHHHHHHHhhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~--~lTV~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 198 (712)
.++.++|++|++.++. ..|+++++.+.... ...... ..+.+++++++++.+||.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999976543 35777776543211 011111 1233457889999999986 666644 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHh-cCCeEEEEeCCeEEEe
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~Hqp~~~i~~-~~D~v~lL~~G~iv~~ 276 (712)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 4799999996 56766 5899999999998865
Q ss_pred c
Q 005142 277 G 277 (712)
Q Consensus 277 G 277 (712)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 330
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=341.95 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=173.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+ +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999988 3456999999999999999999999999999999999999885 899999874 45
Q ss_pred EEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHH
Q 005142 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
++|++|++. +++.+||+|++.+... . ...+++++++++.+|+. +..++. +..||||||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHHHH
Confidence 899999964 5567899999864211 1 11235678899999994 556664 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-EecChhhHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 283 (712)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ +++.++||++++|++|+++ +.|++++..
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999887 35999999996 6788899999999999998 888877543
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=301.37 Aligned_cols=217 Identities=27% Similarity=0.367 Sum_probs=184.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~--- 124 (712)
....|+++|+++.+ ++|+||+|+|++|+|||-.+|+|||||||||||++++|..+|. +|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 28 NEPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred CcceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 34569999999998 5689999999999999999999999999999999999998885 899999998631
Q ss_pred ---CCcCcEEEEecC--CCCCCCCCHHHHHHHHhh--hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 125 ---LSFGTAAYVTQD--DNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 125 ---~~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
..++.||||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|...+ .||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCH
Confidence 124679998654 344567788888764422 1112212345666788999999999999988765 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+...+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999874 78999999996 78999999999999999999
Q ss_pred ecC
Q 005142 276 FGE 278 (712)
Q Consensus 276 ~G~ 278 (712)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-35 Score=303.95 Aligned_cols=190 Identities=29% Similarity=0.376 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEEccC--Cc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC
Q 005142 51 RLTWKDLTVMVTLSN--GE--THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~ 126 (712)
.++++||++.+..+. +. ...+++||||++++||+++|+|+||||||||-++|.|+.+|+ +|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhc
Confidence 589999999997542 11 247999999999999999999999999999999999999986 99999999874321
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
. +++..+++.++|+.+||.. .++ .++++||||||||+.|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHH
Confidence 1 3445678999999999864 333 3789999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||||+.+|+++++|||||.||...+.+++++|+++.+ .|.|.++++||. +.+..++|++.+|..|++|+.|+.+++..
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999987 599999999995 67888999999999999999999987653
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-35 Score=306.16 Aligned_cols=188 Identities=23% Similarity=0.314 Sum_probs=155.4
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCH
Q 005142 71 VLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 71 iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 145 (712)
.++|++++++ +||+++|+||||||||||+++|+|.++|. +|+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5566666665 79999999999999999999999999886 899999985 48999999877778899
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgL 225 (712)
+|++.+...... . ....++++++.++|.+..++.+ ..|||||||||+||++|+.+|++++|||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976532111 0 1134577889999987776644 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE--EecChhh
Q 005142 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA 281 (712)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv--~~G~~~~ 281 (712)
|+.++..+.+.|+++++ .|+|||+++|++ .++..+||++++|+++..+ ..+++.+
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999976 589999999996 5788899999999765433 3344444
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-35 Score=370.16 Aligned_cols=238 Identities=24% Similarity=0.294 Sum_probs=187.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+|++|.+||.++++.++.... . .+ ... .....++++|+++.++.+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~-~----~~--------~~~-----~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA-Q----NP--------PLQ-----PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc-c----cC--------CcC-----CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 678999999999986553221 0 00 000 011259999999998421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
||.++|+||||||||||+++|.|.+++. +|.+. ..++.++||+|++.+|+. ||+|||.|+.. .
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------F 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------c
Confidence 9999999999999999999999999885 66553 123579999999999987 99999999742 1
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005142 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (712)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~ 234 (712)
+. ++.+++++..+ |++..+|.||+. ...||||||||++||||+.++|+|++||||||+||++++.+++
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 22 22333443333 456778999984 5579999999999999999999999999999999999999998
Q ss_pred HH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 235 ~~-L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+. ++.. .+|+|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 65 4443 36899999999974 578899999999999999999888753
No 335
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.1e-35 Score=369.05 Aligned_cols=236 Identities=23% Similarity=0.294 Sum_probs=188.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++++|.+||.++++.++..+. + .+ ... . ....++++|+++.+..+ .++.+|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~--~~--------~~~---~--~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P--NP--------PLE---P--GLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c--CC--------ccc---C--CCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 578999999999975543221 0 00 000 0 01259999999998421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (712)
||.++|+||||||||||+++|.|.+++. + |+|.+. +.++||+|++.+|+. ||+|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999875 8 899864 458999999999987 999999997431
Q ss_pred CCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005142 161 MPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (712)
Q Consensus 161 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i 233 (712)
+. ++.+++++..+ |++..+|.||+. ...||||||||++||||+..+|+|++||||||+||++++.++
T Consensus 706 -d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -DP----ERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -cH----HHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 12 23444444443 456679999984 457999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 234 ~~-~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++ .++.+. +|+|+|++||++ ...+.+|+|++|++|++++.|+.+++.
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 455543 589999999997 357889999999999999999988875
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-34 Score=334.91 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=169.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.+ +++.+|+|||+++++||+++|+||||||||||+++|+|+++|. +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999988 3467999999999999999999999999999999999999885 899999542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHH
Q 005142 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+||++|+. .+++.+||+|++.+...... .... ...++++++.+||.+ ..++. +.+|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHH
Confidence 89999996 78889999999998643221 1111 123456899999964 45654 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC-CeEE-EecChh
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 280 (712)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++.++||++++|++ |++. +.|+.+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999873 4 899999996 678899999999985 7876 566554
No 337
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=298.29 Aligned_cols=207 Identities=26% Similarity=0.360 Sum_probs=180.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEe-cCCCCCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~-Q~~~l~~~l 143 (712)
..+++||||+|++|++++++|||||||||+||+|+|++.|. +|.|.+||...... -+.+++|+ |...+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45899999999999999999999999999999999999986 99999999864221 24567664 445677777
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
.+.|.+....... .++.++.+++.+...+.++|+...+.. ++.||-|||.|+.||.+|+++|++|||||||=
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 8888887765443 466788889999999999998777664 47899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 005142 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 287 (712)
|||..++..|.+.|++..+ .+.||+.+||+. +++.++||+|++++.|+++|.|+.++..+-|.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999976 689999999995 68999999999999999999999998887653
No 338
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=314.30 Aligned_cols=217 Identities=29% Similarity=0.402 Sum_probs=185.2
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...+.|+|+++.+. +.+++|+++|+.+++|+.+||+||||+||||++++|-..++++ +|.|.+||++++.
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHH
Confidence 34589999999884 5688999999999999999999999999999999999999886 9999999997532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
.++-||.||||..||.+ |+..|+.++..- .+.+++.+ ...+.++ .+++..|+.||+.+.+ ||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr~~-----at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk-lSgg 403 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGRPD-----ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK-LSGG 403 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccCcc-----ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-ccCc
Confidence 24679999999999987 999999987432 23333322 2333443 3688899999986554 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|||||+|||+++++|+||++||.||+||+.+.+.+...|++++ .|+|.+++.|..+. .--+|+|++|++|++++.|.
T Consensus 404 ekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 404 EKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred hHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCCEEEecCc
Confidence 9999999999999999999999999999999999999999987 58999999999753 45699999999999999999
Q ss_pred hhhHHH
Q 005142 279 TSAAFE 284 (712)
Q Consensus 279 ~~~~~~ 284 (712)
-++++.
T Consensus 481 h~~ll~ 486 (497)
T COG5265 481 HEELLA 486 (497)
T ss_pred HHHHHH
Confidence 887664
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.1e-34 Score=332.22 Aligned_cols=203 Identities=23% Similarity=0.301 Sum_probs=169.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++|+++.+ +++.+|+|+|+++++|++++|+||||||||||+++|+|..+|. +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 369999999988 3467999999999999999999999999999999999998875 899999542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHH
Q 005142 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
++|++|+. .+++.+||.|++.+...... .... ...++++++.+||.+ ..++. +..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHH
Confidence 89999996 47888999999998643211 1111 123557899999964 45654 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC-CeEE-EecChh
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 280 (712)
+|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|||+ ..+.++||++++|++ |+++ +.|+.+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 9999999999999999999999999999999883 3899999996 678889999999986 5776 556554
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-34 Score=334.15 Aligned_cols=199 Identities=24% Similarity=0.278 Sum_probs=171.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...|+++|+++.+. +. .|+++|+++++||+++|+||||||||||+++|+|+++|. +|+|.++ .
T Consensus 338 ~~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~ 400 (590)
T PRK13409 338 ETLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------L 400 (590)
T ss_pred ceEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------e
Confidence 34699999999872 22 599999999999999999999999999999999999886 8999986 1
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|+..+++.+||+|++.+..... .. ...++++++.++|.+..|+. +..|||||||||+||++
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiAra 467 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIAAC 467 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHHHH
Confidence 4899999988888899999998753211 11 13467899999998777764 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ .++..++|++++|+ |++...|..
T Consensus 468 L~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 468 LSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999999999987 489999999996 67889999999996 588777764
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-34 Score=339.79 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999773 2346999999999999999999999999999999999998775 89998864 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCChHHHHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg----~~~~~~LSGGerqRvsIA 206 (712)
+||+|++.+++. |++||+.++........ ....++.+.++++.++|.+..++..| ......||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999988643210000 00112456788888998765443221 013468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
|+|+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999974 458899999996
No 342
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6e-34 Score=359.42 Aligned_cols=244 Identities=23% Similarity=0.321 Sum_probs=188.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+||.++++.++...... + .... .......++++|+++.+.. ..+.+|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~-------~----~~~~----~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSI-------E----RRTI----KPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccc-------c----cccc----CCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 57899999999997654422100 0 0000 0001125999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
||+++|+||||||||||+++|+|.+++. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999885 89999987 4899999998876 5999999986421
Q ss_pred CHHHHHHHHH--HHHHHcC-CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005142 162 PWSEKRTLVE--RTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (712)
Q Consensus 162 ~~~~~~~~v~--~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~ 238 (712)
..++.++.++ .+.+.++ +++..+|.+|+ .+..||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1222111111 1222333 34456788887 467899999999999999999999999999999999999999999997
Q ss_pred HHH--hCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 239 ~l~--~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+.. .+|+|+|++||++. . .+.+|+|++|++|++++.|+.+++.+
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 542 35799999999974 3 45699999999999999999888753
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-34 Score=300.43 Aligned_cols=198 Identities=25% Similarity=0.317 Sum_probs=162.8
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecC
Q 005142 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (712)
Q Consensus 56 ~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------i~G~~~~ 124 (712)
||+++|. ..+.+|+|+| .+++||+++|+|||||||||||++|+|+++|+ +|+|. ++|++..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 4566662 2236999999 59999999999999999999999999999886 99996 7787642
Q ss_pred C-----C--cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 125 ~-----~--~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
. . ...++|++|...+++. ++.+++.+... ....++.+.++++.+||.+..++. +..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRN-----IDQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1 1 1237899999888775 88888876421 223346678899999998766664 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++||++|+.+|+++++||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++++.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999988889999999996 56778999999994 6565544
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.3e-34 Score=273.07 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+ ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 46889998872 346999999999999999999999999999999999999875 999999985 3589
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
|++| ||+||+||++|||+|+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++ +++.+++|++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999996 57888999999999985
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-34 Score=333.32 Aligned_cols=203 Identities=28% Similarity=0.368 Sum_probs=171.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.+ +++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 469999999988 3467999999999999999999999999999999999999885 899999742 25
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005142 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 130 ~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+||++|+. .+.+..|+.+++.. . . .......+.++|+.+++.. ..++.+ ..|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 35566788777532 1 1 1122456788999999963 566654 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-EecChhhHHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 284 (712)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+.++||++++|.+|+++ +.|+.++..+
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999987 34 999999995 6788999999999999997 8898876543
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=282.28 Aligned_cols=216 Identities=26% Similarity=0.394 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
++++|+++.+.......+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.++ +|+|.++|.++.. +
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4567777777655566789999999999999999999999999999999999999886 9999999998642 1
Q ss_pred cCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCcccCCCChHH
Q 005142 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIE--MGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
...++-|+||+ ..++.||+.||+..+..--...+... ...++...+.+.. +||++..++.+| -|||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchH
Confidence 24577899997 56899999999998864311112221 2233334445555 467788888876 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
||-+++++|-++.|+||+|||-|++|||.++..|++.-.++.+ .+.|.+++||.. .+..++-+|.++|++|+||..
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999998865 578999999995 688999999999999999975
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=266.27 Aligned_cols=190 Identities=26% Similarity=0.381 Sum_probs=167.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.++++|++... +.+.+|.|+|++|.+||++-||||||||||||+..+.|.+.+....+|++++|+++.+. ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47889998665 56789999999999999999999999999999999999998877789999999997543 35
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+++|..+||+.+||.++|.+||.|+. |....-..++..++..|++.||....+. .+..||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 78999999999999999999999874 3344445677788999999999887776 45689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCC
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQP 254 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~~Hqp 254 (712)
+|+..|+.++||||+|.||..-+.++.+..-. +...|..+|.+|||.
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999999999999998754 445799999999994
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-33 Score=280.77 Aligned_cols=220 Identities=20% Similarity=0.241 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEcc-------------------CCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 005142 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (712)
Q Consensus 51 ~l~~~~l~~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 111 (712)
.++++|+++.+... +.....+|+||||++++||.++|+|+|||||||||++|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 46777887776531 123467999999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005142 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (712)
Q Consensus 112 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (712)
+|+|.++|+-.... .=.-.+-|.+|.+||+.+-..+. ++++++.+++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 -SGKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -CceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999999742211 01123457799999999987653 5678999999999999999999999865
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
+..|.||+-|++.|.+...+|++||+||-.+-.|+.-+++..+.++++.++++|||+++|++ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 57999999999999999999999999999999999999999999999988889999999996 6899999999999999
Q ss_pred eEEEecChhhHHHHHHHc
Q 005142 272 KTVYFGETSAAFEFFAQA 289 (712)
Q Consensus 272 ~iv~~G~~~~~~~~f~~~ 289 (712)
++.+.|+++++.++|...
T Consensus 224 ~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEEcCCHHHHHHHHHHh
Confidence 999999999999988653
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.7e-34 Score=279.19 Aligned_cols=155 Identities=28% Similarity=0.429 Sum_probs=136.3
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEe
Q 005142 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (712)
Q Consensus 55 ~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 134 (712)
.||++.+ +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5778877 346789885 899999999999999999999999999999886 8999999863 68888
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC
Q 005142 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (712)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~ 214 (712)
|+.. ||||||||++||++|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe--cChhhH
Q 005142 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSAA 282 (712)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~--G~~~~~ 282 (712)
+++|||||+|||+.++..+.+.|+++++++ .|||+++|++ .++.++||++++|+++-.++. |++...
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcch
Confidence 999999999999999999999999998765 9999999996 577889999999998876655 555433
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=328.95 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=164.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
|+++||++++ +.+.+|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999998 4577999999999999999999999999999999999998886 899999874 2478
Q ss_pred EEecCCCCCCCCCHHHHHHHHhh-----------------------hcC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 005142 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~-----------------------l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~ 186 (712)
|++|+...+. .|+.+.+.-... +.. .......+.+.+++++++.+|+. +..+..
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 9998754332 466554431100 000 00000112345788899999996 456665
Q ss_pred ccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 005142 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 187 vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+ ..+.++||+++
T Consensus 147 ~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 V-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred h-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 5 469999999999999999999999999999999999999999998875 56999999995 67889999999
Q ss_pred EEeCCeEE-EecChhh
Q 005142 267 LLSGGKTV-YFGETSA 281 (712)
Q Consensus 267 lL~~G~iv-~~G~~~~ 281 (712)
+|++|+++ |.|+.+.
T Consensus 218 ~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 218 HIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEeCCEEEEecCCHHH
Confidence 99999996 5676553
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-33 Score=329.70 Aligned_cols=205 Identities=25% Similarity=0.349 Sum_probs=170.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...|+++||++.+ +++.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.+ |.+ -
T Consensus 317 ~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~ 382 (635)
T PRK11147 317 KIVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----L 382 (635)
T ss_pred CceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----c
Confidence 3469999999988 3467999999999999999999999999999999999998885 899998 432 2
Q ss_pred cEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHH
Q 005142 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ +.|||||||||+||
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la 452 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLA 452 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHH
Confidence 489999985 5889999999998753211 001 1134577889999985 4556644 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe-CCeEEE-ecChhh
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~-~G~iv~-~G~~~~ 281 (712)
++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++|||. ..+.++||++++|+ +|+++. .|+-++
T Consensus 453 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 453 RLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9999999999999999999999999999999876 45999999995 67889999999998 799864 565543
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-33 Score=277.38 Aligned_cols=158 Identities=28% Similarity=0.346 Sum_probs=132.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHH
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
..+.+|+|+|+++++|++++|+|||||||||||++|.+ .+|+|.++|.........++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH-----------
Confidence 34679999999999999999999999999999999953 279999998743222334778776
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 005142 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTS 223 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~--P~llllDEPTs 223 (712)
.+.++.++|.. ..+. .++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 23567778864 3454 4467999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|||+.++..+.+.|++++++|+|||++||++. ++ +.+|++++|.+|+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 99999999999999999878999999999974 44 78999999966443
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.4e-34 Score=270.25 Aligned_cols=222 Identities=23% Similarity=0.347 Sum_probs=190.9
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--
Q 005142 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-- 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-- 124 (712)
-|+++||++++.... .....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|++||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCcccccc
Confidence 377889998886431 23456899999999999999999999999999999999999986 999999998753
Q ss_pred ---CCcCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005142 125 ---LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 125 ---~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (712)
.+.+.+-.++||+ .+.|.+.+.+-|.... ++...+..+++.+++.+.|..+||- +.++- +++-||-|
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~ 153 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPG 153 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCch
Confidence 2346799999997 4667788888777654 4455667788889999999999984 34443 66789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||++||||+.+|+|+|.||...+||...+.+++++..+|.+ .|.+-|.++.+. .-+..++|+|++|++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 99999999999999999999999999999999999999999986 699999999985 5788999999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
++.+++
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 998764
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.6e-33 Score=325.71 Aligned_cols=206 Identities=24% Similarity=0.350 Sum_probs=167.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.+. +.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999882 2346999999999999999999999999999999999999885 899998753 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
++|++|+. ...+++.++.........+. .. .+.+.++++.+|+.+ ..+. .+..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHH
Confidence 89999985 34556666644321111111 11 245778999999973 4555 446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-EecChhhHHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 284 (712)
|+.+|++|||||||+|||+.+...+++.|++. .| |||++|||+ ..+.++||++++|.+|+++ +.|+.++..+
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999998888765 34 999999996 6788899999999999998 7887765443
No 355
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=339.26 Aligned_cols=223 Identities=27% Similarity=0.443 Sum_probs=202.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..+..+||++.+... +.+++++|+.+++||+.+++|+|||||||++|+|.|..+|+ +|++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 568899999988421 11999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.+||+||+|.+++.+|.||++.+.++++ ++++++.++.++..++.+||.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 3467999999999999999999999999987 45677788889999999999999999765 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++|.||+.+|++++|||||+|+||.+++.+.++++++.++|+.||+|||. .+|...+|||+.+|.+|++...|+++++.
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 99999999999999999999999999999999999999988899999999 58999999999999999999999999998
Q ss_pred HHHHH
Q 005142 284 EFFAQ 288 (712)
Q Consensus 284 ~~f~~ 288 (712)
..|..
T Consensus 787 srfG~ 791 (885)
T KOG0059|consen 787 SRYGS 791 (885)
T ss_pred hhcCC
Confidence 77643
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1e-32 Score=347.39 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=158.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
+.+|+|+|+++++|++++|+|||||||||||++|+|..++. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999885 89999987 38999999999986 99999
Q ss_pred HHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 149 ISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
+.|+... .....++ ..++.++. +.+..+|.+|+ .+..||||||||++||||++.+|+++||||||+
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIAL--FPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHh--ccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987431 1111111 11222322 23345677886 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 224 GLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 224 gLD~~~~~~i~~~-L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+||+.++..+.+. ++.+. +|+|+|++||++. . .+.||+|++|++|+++..|+.++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~-~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-H-LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-H-HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999985 66664 4899999999974 3 4569999999999999999988775
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.9e-33 Score=322.90 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+ +.+.+|+||||++++|++++|+|||||||||||++|+|..+|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 48999999998 3467999999999999999999999999999999999998885 899999873 136
Q ss_pred EEEecCCCCCCCCCHHHHHHHHh------------------------------hhc--CCCCCCHHHHHHHHHHHHHHcC
Q 005142 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLR--LPDKMPWSEKRTLVERTIIEMG 178 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~------------------------------~l~--~~~~~~~~~~~~~v~~~l~~lg 178 (712)
+|++|.+......+|.+++..+. .+. .. .....+.+.++.++++.+|
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCC
Confidence 78888654333346666542110 000 00 0001123456888999999
Q ss_pred CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 005142 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (712)
Q Consensus 179 L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i 258 (712)
+.. ++ .+..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||+ ..+
T Consensus 148 l~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~-~~l 216 (635)
T PRK11147 148 LDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDR-SFI 216 (635)
T ss_pred CCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCH-HHH
Confidence 962 44 44679999999999999999999999999999999999999999999887 25999999996 678
Q ss_pred HhcCCeEEEEeCCeEE-EecChhhH
Q 005142 259 FELFDRLYLLSGGKTV-YFGETSAA 282 (712)
Q Consensus 259 ~~~~D~v~lL~~G~iv-~~G~~~~~ 282 (712)
.++||+|++|++|+++ |.|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 8999999999999997 55776543
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-32 Score=262.08 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.2
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 005142 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (712)
Q Consensus 54 ~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~ 128 (712)
++|+++.+. .+.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|.++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888872 347999999999999999999999999999999999999875 8999999986432 124
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
++.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ +++...||+++++++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999887789999999996 57778899999999875
No 359
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.8e-31 Score=322.39 Aligned_cols=239 Identities=25% Similarity=0.323 Sum_probs=192.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+|+.+.+|+.+++..+.....-.. + . ........++++|.+++-.. ......|+|||+++++
T Consensus 485 qa~VS~~Ri~~fl~~~e~~~~~~~-------~-----~----~~~~~~~~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSEELDPDSVE-------R-----S----PDEAGENAIEIKNGSFSWDS--ESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCcccCccccc-------c-----C----CCCCCCceEEEeeeeEecCC--CCCcccccceeEEecC
Confidence 678999999999976555332110 0 0 11123345889999988643 1234489999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
|+++||+||-|||||+||.+|.|-.+. .+|+|.++|. ++||+|.+.+++. ||||||.|+..+
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~------ 608 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPY------ 608 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCccc------
Confidence 999999999999999999999999876 4999999875 8999999999987 999999998543
Q ss_pred CHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005142 162 PWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (712)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~ 234 (712)
. +++-+++++.-.| +++-.|.||+++ -.||||||||+++|||+-+|++|++||.|.|++|++...++.
T Consensus 609 d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 609 D----EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 1 2344445544443 345678899854 469999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 235 ~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+..-+-.-+++|+|++|||. +..+.+|.|++|++|++...|+.+|+.
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 76554334689999999984 578999999999999999999999887
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=4.4e-32 Score=313.26 Aligned_cols=181 Identities=30% Similarity=0.402 Sum_probs=152.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCC-------CcCc
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL-------SFGT 129 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~ 129 (712)
...+|++++ .+++||+++|+||||||||||||+|+|.++|+ +|+|. ++|++... ....
T Consensus 86 ~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 161 (590)
T PRK13409 86 NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161 (590)
T ss_pred CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcc
Confidence 346999999 99999999999999999999999999999886 89997 89976321 1123
Q ss_pred EEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 130 AAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 130 ~~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+++.+|.....|. .||+|++... +...+++++++.++|.+..|+.+ ..|||||||||+||
T Consensus 162 ~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia 224 (590)
T PRK13409 162 VVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIA 224 (590)
T ss_pred eeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHH
Confidence 5655554333332 2999998631 12356889999999988888755 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|++|
T Consensus 225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999988 99999999996 6788999999999864
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.5e-32 Score=261.89 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc---
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~--- 127 (712)
.++.+||++.- +.+.++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|.++|.+++..+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35677887764 5678999999999999999999999999999999999999996 999999998754322
Q ss_pred -CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 128 -~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+.+-|+-..+.+-+.+||.|||.|-..+... . ....+.+.++.+||....|..++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 4567888888899999999999998765432 1 12457889999999999999775 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
|-++..+++-|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999988899999999999864
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.7e-32 Score=255.32 Aligned_cols=215 Identities=28% Similarity=0.370 Sum_probs=169.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---cCC--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TKL-- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~---~~~-- 125 (712)
-|++++|++.| +...-.+||||++.|||+++|+|+|||||||||++|++++.|+ .|+|.+.-.+ .+.
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 58889999888 3455679999999999999999999999999999999999986 8999886532 111
Q ss_pred ---------CcCcEEEEecCCC--CCCC----CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005142 126 ---------SFGTAAYVTQDDN--LIGT----LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (712)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~----lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 190 (712)
.+-.-|+|.|++. +-.. -.|.|-+.-.-. + ..-..++...++|+++.++.. .+ +.
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-R-----HYG~iR~~a~~WL~~VEI~~~---Ri-DD 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-R-----HYGNIRAEAQDWLEEVEIDLD---RI-DD 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-h-----hhhhHHHHHHHHHHhcccCcc---cc-cC
Confidence 0123689999963 3222 233443321110 0 123456677889999888532 22 23
Q ss_pred ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.++..|||++||+.|||-|++.|++.|+||||.|||..-+..++++++.+.. -|..++++|||. .-+.-++|+.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 6789999999999999999999999999999999999999999999999986 589999999995 45556799999999
Q ss_pred CCeEEEecChhhHHH
Q 005142 270 GGKTVYFGETSAAFE 284 (712)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (712)
+|++++.|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998887653
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.7e-31 Score=301.69 Aligned_cols=206 Identities=30% Similarity=0.403 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++|+++.+ +.+.+|+|+|+++.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. -++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58899999998 5688999999999999999999999999999999999999886 899987542 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (712)
+|++|++.+.+..||.+.+.-+..-. .+.. +..-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887653210 0000 0000123567788888888876
Q ss_pred cccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 005142 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (712)
Q Consensus 184 d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D 263 (712)
++.++ +||||||.||+||++|+.+|++|+|||||++||..+...+-+.|++. .| |+|+|||| +..+-+.|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 66554 69999999999999999999999999999999999999999999754 56 99999999 788999999
Q ss_pred eEEEEeCCeEE-EecChh
Q 005142 264 RLYLLSGGKTV-YFGETS 280 (712)
Q Consensus 264 ~v~lL~~G~iv-~~G~~~ 280 (712)
+|+.++.|++. |.|.-+
T Consensus 219 ~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 219 HILELDRGKLTPYKGNYS 236 (530)
T ss_pred heEEecCCceeEecCCHH
Confidence 99999999775 556544
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=5.4e-31 Score=332.17 Aligned_cols=193 Identities=26% Similarity=0.374 Sum_probs=155.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
++.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++ +.++||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999885 8999873 45999999998875 59999
Q ss_pred HHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005142 148 TISYSARLRLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPT 222 (712)
|+.|+... ..+... ...++.++.+ .+..++.+|+ .+..||||||||++|||||+.+|++++|||||
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99985321 111111 1223334443 2233566665 46789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++||+.++..+++.+.....+|+|+|++||++. ..+.+|+|++|++|++++.|+.++..
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999998754322235899999999973 34789999999999999999988764
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.8e-30 Score=313.74 Aligned_cols=247 Identities=21% Similarity=0.308 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCe
Q 005142 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (712)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (712)
..|-+|+.|..+.+++ ......+.. ++..| +..-.++++|++++|.. +...||||||++|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~--pp~~W----------P~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESR--PPPSW----------PSKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCC--CCCCC----------CCCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 4577899999886555 211110000 11111 23446999999999953 44679999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (712)
.++|+|..|||||||+++|-++..+. +|+|.|||.++.. .+++++.+||||.+|.+ |||.||.=..+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e---- 1239 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDE---- 1239 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcccc----
Confidence 99999999999999999999998875 8999999998642 25789999999999998 99999863211
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 159 DKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
.+.+ .+.+.|+..+ ++...|+.|.+ ....+|-||||.+++||||+++++||+|||+|++.|+++-.
T Consensus 1240 --~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1240 --YSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred --cCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 1222 2333344333 34457777765 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.|-++|++-= +++|||.+.|+.++ + --+|||++|++|+++++|+|.++++
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998853 46999999999753 3 4589999999999999999998765
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.7e-30 Score=305.33 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=150.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~--- 124 (712)
....|+++|++++| +.+.+|+|+|++|++|+.++|+|||||||||||++|+|+...+.+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 34569999999999 3456999999999999999999999999999999999974111112566654332100
Q ss_pred --C-------C-------cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHH-------------------HHHHH
Q 005142 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (712)
Q Consensus 125 --~-------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-------------------~~~~~ 169 (712)
. . ...++|++|++.+... ++.++..... ....+.+ +..++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGAN----KDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccccc----ccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0112333333211110 1111100000 0001111 22345
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 005142 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (712)
Q Consensus 170 v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI 248 (712)
+.+++..+|+. +..++. +..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 66677777875 334443 4579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCchHHHhcCCeEEEEeCCeEE-EecChhh
Q 005142 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (712)
Q Consensus 249 ~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 281 (712)
+++|+. ..+.+.||++++|++|+++ |.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999995 6788899999999999996 6777654
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=8.9e-30 Score=261.29 Aligned_cols=190 Identities=25% Similarity=0.288 Sum_probs=135.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--E-e--cCCCcCc
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--H-K--TKLSFGT 129 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG~~~~~~~~~G~I~i~-----------G--~-~--~~~~~~~ 129 (712)
.+..+|+|||+++++||+++|+||||||||||+ ..+.. .|++.+. | . + .+.....
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 346799999999999999999999999999996 44431 1221110 0 0 0 0011112
Q ss_pred EEEEecCC-C-CCCCCCHH---HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHH
Q 005142 130 AAYVTQDD-N-LIGTLTVR---ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 130 ~~yv~Q~~-~-l~~~lTV~---E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+..|++ . +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. ++..||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 33444443 2 23444544 2222221111 11112233 46789999975 3555 4568999999999
Q ss_pred HHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEE
Q 005142 204 SIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVY 275 (712)
Q Consensus 204 sIA~aL~~~P--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~ 275 (712)
+||++|+.+| +++||||||+|||+.++..+.+.|++++++|.|||++||++ +++ ++||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 59999999999999999999999999988899999999997 444 799999999 9999998
Q ss_pred ec
Q 005142 276 FG 277 (712)
Q Consensus 276 ~G 277 (712)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.9e-30 Score=243.05 Aligned_cols=209 Identities=26% Similarity=0.355 Sum_probs=172.4
Q ss_pred eEEEEEeEEEEEEcc--CCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--cC-
Q 005142 50 ARLTWKDLTVMVTLS--NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK- 124 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~--~~- 124 (712)
..|..+|+++++... .+-.-++|+|+|++++.||++++=||||+||||||++|-|-+.|+ +|+|++.-.. .+
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhh
Confidence 358889999888654 233457999999999999999999999999999999999999886 9999985431 11
Q ss_pred ----------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005142 125 ----------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (712)
Q Consensus 125 ----------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (712)
.+++.+|||.|.-...|..+..|.+.-.+.. .+++.+..+.++.+++.++++.+..=.. .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1245789999998888887777766654432 3566777888999999999997643322 4568
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.||||+|||.|||.++.+-+||+|||||+.||..++..++++|.+-+..|..+|=+-||- +--...+||++-+.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~ 226 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVS 226 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999999999988999999999993 33345799999875
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=7.1e-30 Score=240.64 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
|+|||+++++|++++|+|+||||||||+++|+|..++. +|+|.+||.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999875 9999999998643 246799999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
|+ ...++++++++.+++.+..++.++. ....||||||||++||++|+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 2235688899999998888888765 447899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1e-28 Score=257.33 Aligned_cols=195 Identities=27% Similarity=0.334 Sum_probs=150.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--CCce------eEEEECCEecCCC-c--
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRLA-----SN--AFLS------GTILLNGHKTKLS-F-- 127 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-----G~~~-----~~--~~~~------G~I~i~G~~~~~~-~-- 127 (712)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+. +. .... --|.++..++... +
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1110 10 0011 1356666543110 0
Q ss_pred ----------------------------CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005142 128 ----------------------------GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (712)
Q Consensus 128 ----------------------------~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 179 (712)
..+.|..++...+..+||.|++.|...+. ..+++.+.++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 01345556655567899999999876532 12456778999999
Q ss_pred Cc-cccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 180 ~~-~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~---P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
.+ ..+. .+..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~- 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL- 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-
Confidence 76 3454 3467999999999999999996 799999999999999999999999999988899999999997
Q ss_pred hHHHhcCCeEEEE------eCCeEEEecCh
Q 005142 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (712)
Q Consensus 256 ~~i~~~~D~v~lL------~~G~iv~~G~~ 279 (712)
.. .+.+|+++.| ++|++++.|++
T Consensus 233 ~~-i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 4689999999 89999999874
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=269.35 Aligned_cols=204 Identities=27% Similarity=0.337 Sum_probs=168.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~ 127 (712)
....++++|+++.+. +.+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 456799999999983 2378999999999999999999999999999999999998875 899987421
Q ss_pred CcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHH
Q 005142 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsI 205 (712)
-.+||..|+. .+.+..|+.|++.-... .. .+..+...|..+++... ..+. ++.||||||.||.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~-----~e~~~r~~L~~f~F~~~~~~~~-----v~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFP----DG-----DEQEVRAYLGRFGFTGEDQEKP-----VGVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCc----cc-----cHHHHHHHHHHcCCChHHHhCc-----hhhcCHhHHHHHHH
Confidence 3489999996 55578899999875421 10 14668889999999643 3444 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe-cChhhHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAAF 283 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~-G~~~~~~ 283 (712)
|+.++.+|.+|||||||+.||..+...+.+.|... .-|||++||| ...+-+.+++++.+.+ ++..+ |..++..
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 99999999999999999999999999999998776 3699999999 5789999999999998 55544 7655433
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=4.6e-28 Score=243.41 Aligned_cols=165 Identities=27% Similarity=0.348 Sum_probs=130.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEecCC--CcCcEEEEecCCCCCCCCC
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~------~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (712)
+++++++++| +++|+||||||||||+++|+|..++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999987543 1224578888875422 236799999998765
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeC
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~----~~P~llllDE 220 (712)
|.. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|+++++||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 02356666665 333444 45679999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
||+|||+.....+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 9999999999999999999965 689999999963 3 578999999973
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=256.76 Aligned_cols=214 Identities=24% Similarity=0.419 Sum_probs=178.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-- 126 (712)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 456778887742 2578999999999999999999999999999999976654 89999999975432
Q ss_pred ----cCcEEEEecC---CCCCCCCCHHHHHHHHhhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 005142 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (712)
Q Consensus 127 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LS 196 (712)
...++|||.| +.++..++|++|+.++...+.. . -.+.+..++.+++.++.+++.- ..+.. +..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCC
Confidence 2458999998 4689999999999988322211 1 2455566678889999998853 23444 45799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
||.+|+|.||+.|..+|++|||||||.|.|.-+..+|.++|++++++|++||++|-+. +|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 799999999999999999875
Q ss_pred cChh
Q 005142 277 GETS 280 (712)
Q Consensus 277 G~~~ 280 (712)
=+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4443
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=1.6e-28 Score=233.06 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.+.++|+.+.- -|-.+|+.+..||++-++|||||||||||-.++|+++. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 35566666432 36789999999999999999999999999999999865 8999999998532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.-+|..|+..-...+.|.+.+... .| .++....++++...++|.+...+. +..|||||-|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLH----QP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEE
Confidence 124558998887666677899888653 23 355667788888899998766553 46799999999999
Q ss_pred HHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 206 A~aL~~-----~P--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|...+. || ++|+||||.++||......+-..|.++++.|.+||++.||. +...+.+|++++|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecc
Confidence 987764 55 69999999999999999999999999999999999999996 56789999999999999999999
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
++++.
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 98875
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.2e-26 Score=238.31 Aligned_cols=183 Identities=20% Similarity=0.339 Sum_probs=128.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC----------------CCCCCcee--------EEEECCEec
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL----------------ASNAFLSG--------TILLNGHKT 123 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~----------------~~~~~~~G--------~I~i~G~~~ 123 (712)
++.++++++ |++++|+||||||||||+++|++.+ .++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456788887 7899999999999999999998432 222 33 555555321
Q ss_pred C-----C---CcCcEEEEecCCCCCC-CCCHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 005142 124 K-----L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (712)
Q Consensus 124 ~-----~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (712)
. . ..+.++|++|+..+++ ..|..|...+...+........ .....++.+ .+++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccc-----ccc
Confidence 0 0 1245788888877776 4677776666544332211000 000112222 2344433333 456
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888884 5789999999996
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3e-27 Score=240.13 Aligned_cols=187 Identities=19% Similarity=0.232 Sum_probs=138.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-CCcCc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-~~~~~ 129 (712)
.|+++|.. .| +.+.+|+++++ ++++|+||||||||||+++|.-. +|.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666655 33 35678999987 89999999999999999999722 222211 11245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
++|++|+..+++.+|++|.+.+.+..... .+...++... ...++++.++|.+..++.+ ..+|+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHH
Confidence 88999998888889999987766543100 0111111110 1245566777877777654 4799999999
Q ss_pred HHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 203 VSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 203 vsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
++||++++. +|+++++||||+|||+.+...+.+.|++++ ++.|+|++||++ ++.++||++++|.
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~ 203 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEE
Confidence 999999974 479999999999999999999999999985 467889999984 6889999999996
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=2.2e-25 Score=251.02 Aligned_cols=197 Identities=27% Similarity=0.386 Sum_probs=159.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...++++||++.-+ ..+..|++.|+.+++||-+.|.||||||||||+++|+|+-+.+ +|+|..- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999998763 3458999999999999999999999999999999999998776 7877552 124
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCChHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg-~~~~~~LSGGerqRvsIA~ 207 (712)
.+-|+||.+.+... |.||-+.+..... .. ..+.+.++|.++||.+..+..=+ +.--+.||+|||||+++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999998777 9999998753221 12 23557789999999876654322 1234579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.|+++|++++|||.||+||..++..+.+.|++-. .+.|||-+.|+|. +..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999998743 3699999999964 567777766554
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.8e-26 Score=238.02 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=137.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-ec-C------CCcCcEEEEecCC---------CCCCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-K------LSFGTAAYVTQDD---------NLIGTLT 144 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~-~~-~------~~~~~~~yv~Q~~---------~l~~~lT 144 (712)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. . .....+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998763 2467777765 21 1 1224688999985 3456789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCChHHHHHHHHHHHH
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~---------------~vg~~~~~~LSGGerqRvsIA~aL 209 (712)
|.+++......+...+ .++...+++.+.++.+||...... ..-+..+..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988876532211000 122334778889999998611000 011225678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 210 ~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
+ .+|+++++||||+|||+.+...+.+.|++++ +|.|||++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999994 6788999999886
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=1.2e-24 Score=269.78 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=113.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHh---hCCC
Q 005142 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (712)
Q Consensus 139 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~---~~P~ 214 (712)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 55678999999987653211112234455566 58889999765 5654 4579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe------CCeEEEecChhhHH
Q 005142 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (712)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~ 283 (712)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ ..+ +.+|++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999988899999999997 455 8999999996 79999999998765
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=4.1e-25 Score=224.72 Aligned_cols=191 Identities=20% Similarity=0.203 Sum_probs=130.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-e---cCC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-K---TKL 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~-~---~~~ 125 (712)
.|+++|+. .|. ++ ++++|... +|++++|+||||||||||+++|++.+... ..+....+.. . ...
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 57777776 431 11 55666543 58999999999999999999999654211 1233332211 0 112
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
....+++++|++.... ++.... .++.++..+.+ .+...++.+..+. .+..||||||||++|
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~l 134 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLASL 134 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHHH
Confidence 2356889998863211 111111 22222222111 1233334443444 456799999999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 206 ALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 206 A~aL~~----------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
|++|+. +|+++++||||+|||+.+...+.+.|++++++|.|||++||++ +.+...+|+++++++|.
T Consensus 135 a~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 135 SLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 999985 5789999999999999999999999999987799999999996 57788999999999875
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=234.15 Aligned_cols=221 Identities=26% Similarity=0.373 Sum_probs=187.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-C--
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-K-- 124 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~-- 124 (712)
....|+++||++.-. .....+++|||+++.||+++|.|-+|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 467899999998642 2256899999999999999999999999999999999998765 69999999985 1
Q ss_pred -C---CcCcEEEEecCC---CCCCCCCHHHHHHHHhhhc----CCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 005142 125 -L---SFGTAAYVTQDD---NLIGTLTVRETISYSARLR----LPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (712)
Q Consensus 125 -~---~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~ 192 (712)
. ....++|||.|. .+.+.+|+.||+.+...-+ ...-..+.+.++.+.+++++++...+ .++ ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 1 124589999995 5778999999998875422 11124567778889999999998633 222 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
+.||||.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++.+. +|+++++|+|.+|++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCc
Confidence 67999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred EEEecChhh
Q 005142 273 TVYFGETSA 281 (712)
Q Consensus 273 iv~~G~~~~ 281 (712)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998877765
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=236.33 Aligned_cols=234 Identities=24% Similarity=0.257 Sum_probs=175.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
+|.+|.++|.++.-.++..+- . +++..+ .--.|+++|+.|.+.. ..-=+..||++|+.
T Consensus 291 ~AqvA~~kiakle~~~~~a~~-~------------~~q~~p-----~~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKADF-P------------RPQAFP-----DWKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCccccC-C------------CCCcCC-----cccceeeeeeeeccCc----ccceecceeeEEec
Confidence 578999999988864444332 1 111111 1235999999998842 22457899999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++-|+|.||||||||++.|.|+..|. +|+|++||++.+.. ++..+-|+-|-++|+.+-
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986432 233455666666665421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~ 236 (712)
.++.. ...+.++..|+.+.|.+...-.=|+-..-.||.|||||+++-.||+-+-+|+++||=.+.-||.-+..+-+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 112456777888777654322222323457999999999999999999999999999999999999999877
Q ss_pred HH-HHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 237 LR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 237 L~-~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+- .++++|+||+.+|||. .-|..+||++.+++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 65 4567899999999995 468999999999999998754
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=6.1e-25 Score=222.00 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=123.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEecC--CCcCcEEEEecCC-----CCCCCC
Q 005142 75 LTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDD-----NLIGTL 143 (712)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~-----~l~~~l 143 (712)
.++++.+| +++|+|||||||||||++|. |...++ .|.+..+.+... .....+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 44567788 99999999999999999995 877654 455541111111 1235688999987 344556
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH------HHHHHHHhhCCCEEE
Q 005142 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLLF 217 (712)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR------vsIA~aL~~~P~lll 217 (712)
|+.|++.+.. . ..+++.+ +. .++.||+||+|| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888875421 1 1222332 22 456799999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEe-CC
Q 005142 218 LDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS-GG 271 (712)
Q Consensus 218 lDEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~-~G 271 (712)
+||||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|. +|
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 99999999999999 999999999876 899999999963 457899999996 44
No 384
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.3e-24 Score=211.86 Aligned_cols=229 Identities=20% Similarity=0.261 Sum_probs=178.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEec-C----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKT-K----L 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~i~G~~~-~----~ 125 (712)
|.++||+..+....+ ...++++||+++..||+-+++|+||||||-..|+|+|..+.+- .+.-...+++.+. + .
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 678899998876543 4568999999999999999999999999999999999876431 1123344555431 1 1
Q ss_pred C----cCcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005142 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (712)
Q Consensus 126 ~----~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (712)
+ .+.++.++|++. |-|.-+|...|.-....+.-.+.-. .-++.++-++|..+|+.+..|-. ..++.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhc
Confidence 1 245789999974 5555555554443322211111111 12456788899999998876643 34788999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||. ..+-+.||++-+|.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999986 689999999995 67899999999999999999
Q ss_pred ecChhhHHH
Q 005142 276 FGETSAAFE 284 (712)
Q Consensus 276 ~G~~~~~~~ 284 (712)
.++.+++++
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999988764
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=1.7e-23 Score=250.25 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=105.9
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHHHhhCC---CEEEE
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P---~llll 218 (712)
+||.|++.|...+. . .....+.|+.+||.+ ..+.. +..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988875432 1 123457899999975 34553 4579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ +.+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999997 344 689999999 799999999988764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=7.9e-23 Score=244.04 Aligned_cols=125 Identities=26% Similarity=0.349 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhh---CCCEEE
Q 005142 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (712)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~---~P~lll 217 (712)
.+||.|.+.|...+. . .....+.++.+||... .+. .++.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777764431 0 1234578888999652 444 346799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhH
Q 005142 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (712)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 282 (712)
|||||+|||+.+...+.+.|+++.++|.|||+++|++ ..+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988899999999997 344 679999999 79999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=227.14 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=147.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-c
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-F 127 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-~ 127 (712)
.-.+.++|+++.+ ..+.+++|+++.+.+|+-++|+|+|||||||+|++|+|+..|....-+...+ .+..... .
T Consensus 73 s~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEK 146 (614)
T ss_pred cccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchH
Confidence 3458899999988 4688999999999999999999999999999999999998774221221111 1111000 0
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhh-hc----------------CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSAR-LR----------------LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~----------------~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~ 189 (712)
..+-+|.+ +.-..+.-++.-+. +. ....+..+....++.+++..+|.. +..++.
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~--- 218 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK--- 218 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH---
Confidence 00001110 00011111111000 00 001122333455666777777753 445553
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 190 ~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
..++|||+|.|+++||+|..+|++|+|||||+|||.++..-+-+.|.+.-+ .++++++|. .+.+-..|.+|+.|.
T Consensus 219 --~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 219 --VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLD 293 (614)
T ss_pred --hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheec
Confidence 467999999999999999999999999999999999999999998877632 289999998 577889999999999
Q ss_pred CCe-EEEecChhhH
Q 005142 270 GGK-TVYFGETSAA 282 (712)
Q Consensus 270 ~G~-iv~~G~~~~~ 282 (712)
+++ +.|.|+-++.
T Consensus 294 ~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQY 307 (614)
T ss_pred ccceeeecCCHHHH
Confidence 999 6677776654
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=215.35 Aligned_cols=190 Identities=23% Similarity=0.315 Sum_probs=150.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...++|.++++++ + ---|.==.+++..||+++++||||-||||+.++|+|.++|+ +|+ ..+ -
T Consensus 340 ~~lv~y~~~~k~~-----g-~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~-----~ 401 (591)
T COG1245 340 DTLVEYPDLKKTY-----G-DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED-----L 401 (591)
T ss_pred ceeeecchheeec-----C-ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----c
Confidence 4567888888876 2 22455567788899999999999999999999999999986 675 111 2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|-||--.--...||++.|.-..+.....+ -...++++-|.|++..+..+ .+|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHH
Confidence 47788886433345699998876544322211 23456777788988888865 4799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
|.+++++++||||++-||++.+..+.+.|+++.+ .++|.+++-||. ..+--++|++++..
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999987 689999999995 45666788888764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.4e-22 Score=203.86 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=120.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----c--CCCcCcEEEEecCCCCCCCCCH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 145 (712)
++++++.+.+| +++|+||||||||||+.+|...+.... . ...-|.. + ......+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~--~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA--S--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc--c--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46778888887 889999999999999999974332210 0 0001211 0 1112457778887665541
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH----hhCCCEEEEeCC
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL----~~~P~llllDEP 221 (712)
+ .....++.++++++. .+..++ .++.||+|||||++||+++ +.+|++++||||
T Consensus 84 ------------~---~~~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 ------------P---LCVLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred ------------c---CCHHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 011123456667665 444555 4467999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~---g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
|+|||..++..+.+.|++++++ +.|||+++|++ +++.+ +|+|.+|..|+
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999996 45655 49999998754
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=5.2e-23 Score=224.51 Aligned_cols=203 Identities=22% Similarity=0.303 Sum_probs=158.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~ 127 (712)
++-.+.++|+++.|+. +..++++++|-+.+++-+|++||||+|||||||++.|.+.|. .|.|.-.-+
T Consensus 386 p~pvi~~~nv~F~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------
Confidence 4456899999998842 237999999999999999999999999999999999999885 787754322
Q ss_pred CcEEEEecC--CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 128 GTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 128 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+++..|. +.+--..++-|++.-.. ++ ....+.+..+|.++||....++. ..+.||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~~----~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKF----PD----EKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhc----cc----cchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHH
Confidence 223444444 23334567777765331 11 22346678899999998544332 456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-EecCh
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGET 279 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~ 279 (712)
|+.++..|.+|+|||||+|||..+...+-+.|.+. .-+||+++||- -.|-+.++++.+..+|.+. +.|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999988888765 35899999995 5788999999999887664 45543
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.5e-22 Score=210.66 Aligned_cols=175 Identities=23% Similarity=0.258 Sum_probs=118.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------c-CC--CcCc--EEEEecCCCC-CCCCCHHHHHH
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------T-KL--SFGT--AAYVTQDDNL-IGTLTVRETIS 150 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~-------~-~~--~~~~--~~yv~Q~~~l-~~~lTV~E~l~ 150 (712)
+++|+|||||||||||++|++.+.+. .|++..++.. . .. .... +.|..|++.. .-.-++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 99999999999999999999987653 4555543321 0 00 0112 3344443221 10111111100
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCChHHHHHHHHHHHHhhC-
Q 005142 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALEILMR- 212 (712)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~---------~vg~~--------~~~~LSGGerqRvsIA~aL~~~- 212 (712)
..+... +....+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 101 ---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 ---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 011111 11122345688888888533211 11122 2378999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 213 ---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 213 ---P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
|+++|+||||+|||+..+..+.+.|++++++|.|||++||++ ++.+.+|++++|.
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 899999999999999999999999999987799999999994 5678999999996
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=4.9e-21 Score=210.54 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=156.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
-.+++++++..-+. .+..+.+|+|++|+.|+-+.|+||||||||+|+++|+|+-+.. +|.+.--.+. ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999886532 2456889999999999999999999999999999999987653 7888653321 1245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCChHHHHHH
Q 005142 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRV 203 (712)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGGerqRv 203 (712)
+-||||.|.+.-. |.||-+.|....-.+ ..+....+++.+.|+.++|.|..+..=| -..-..||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999987666 999999886322111 1122223566777888877765443211 112356999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
+.||.+.++|++-||||.||++|......+-+.++++ |.|.|-+.|.++ +.+.=|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999888888877664 899999999964 6777788888873
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=8e-22 Score=214.20 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=142.8
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...|...|.+..| +.+.+|++-++++..|.-++|+|+||+||||||++|+. |.|..-..+...
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 4568888888888 57899999999999999999999999999999999985 222221111000
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHH-hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
.--|++-...-...-|.++.+... ..+ .. .-+..+...++|..+|.++.... ...+.||||-|-|+++||
T Consensus 141 ~g~~t~~~~~~l~~D~~~~dfl~~e~~l--~~---~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 141 RGDDTEALQSVLESDTERLDFLAEEKEL--LA---GLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALAR 211 (582)
T ss_pred eccchHHHhhhhhccHHHHHHHHhhhhh--hc---cchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHH
Confidence 012333222212222444433321 111 00 10333445558889998754332 245689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE-EEecCh
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGET 279 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i-v~~G~~ 279 (712)
||..+|+||+|||||+.||..+..-+.+.|+.. +.|+|+++|| +..+-+.|..||.+++-++ .|.|.-
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 999999999999999999999999999998776 3799999999 6788888999998877555 244443
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-20 Score=200.17 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=150.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
+-.|-+.|+++.|. +.++++++++|-|.-..-+||+||||.||||||++|.|.+.|+ .|+..-| .+-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 44688899998874 5678999999999999999999999999999999999999986 6765433 233
Q ss_pred cEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 129 ~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+||+..|.. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .++.||||||-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 588888874 45556677777654322 222 3355677889999888885 5678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
.--+..|++|||||||++||.++...+.+.|.+. .-.||+++||.. .|.+.--.++++.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999998888776 458999999954 34444445555543
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.84 E-value=5.6e-20 Score=179.18 Aligned_cols=212 Identities=23% Similarity=0.286 Sum_probs=158.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...+++.++.|+|+. .-+++-|+|++++.|.-+.++|.||||||||||+|+|..-.. .|.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCcccccc
Confidence 346899999999853 347999999999999999999999999999999999975443 5899999975210
Q ss_pred --CcCcEEEEecC----------CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005142 126 --SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (712)
Q Consensus 126 --~~~~~~yv~Q~----------~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (712)
......|.--+ -.+-..+++.+ +.|+..- ... ++-+++++.+.+.- .++.+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g-----~dp----~Rre~LI~iLDIdl-------~WRmH 146 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGG-----DDP----ERREKLIDILDIDL-------RWRMH 146 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHH-HHhhccC-----CCh----hHhhhhhhheeccc-------eEEEe
Confidence 11223333221 11223456644 4444221 111 23344555555431 13445
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.+|-|||+||.|++.|++.=++|+|||-|-.||..++..+++.|++-.+ +|.||+..||-- +-+.....+++.+++|+
T Consensus 147 kvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 147 KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGK 225 (291)
T ss_pred eccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCe
Confidence 6999999999999999999999999999999999999999999999886 699999999984 56788899999999999
Q ss_pred EEEecChhhHHHH
Q 005142 273 TVYFGETSAAFEF 285 (712)
Q Consensus 273 iv~~G~~~~~~~~ 285 (712)
++..-+.++..++
T Consensus 226 l~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 226 LVDNLKYQKIKEF 238 (291)
T ss_pred eeeccccchhhhh
Confidence 9976665555443
No 396
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=3.2e-22 Score=200.10 Aligned_cols=208 Identities=23% Similarity=0.337 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcChhHH-HHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHhhH-hHHHHhh
Q 005142 384 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM 461 (712)
Q Consensus 384 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lff~~~~~~f~s~~~~-p~~~~er 461 (712)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.++++..+++ ++.+++++.+.+..+...... .....|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998554555 778877777776665444433 6667777
Q ss_pred cccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005142 462 KFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 541 (712)
Q Consensus 462 ~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i 541 (712)
. .+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.++++..+..++|.++
T Consensus 80 ~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~ 151 (210)
T PF01061_consen 80 G------TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLL 151 (210)
T ss_pred c------ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheeccccccccccccccccc
Confidence 7 999999999999999999999999999999999999999999999987 67777888888888899999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhh
Q 005142 542 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL 602 (712)
Q Consensus 542 ~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef 602 (712)
+.++++...+..+.+.+..+++++||.+.+.+.+|+ |..|+.|+||++|++|++..++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 152 AALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred ccchhhhhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999985 44459999999999999999876
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=1.6e-20 Score=189.26 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=109.6
Q ss_pred eeceEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCC
Q 005142 72 LEGLTGYAEPG-TLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (712)
Q Consensus 72 L~~vs~~i~~G-e~~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (712)
.-++|+++.+| ++++|+|||||||||||++|+ |...|. .. ...++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~------------~~~~~~~~~~~~~--- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AE------------GSSLPVFENIFAD--- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---cc------------cccCcCccEEEEe---
Confidence 45799999999 489999999999999999998 332221 00 0112333332110
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPT 222 (712)
+++++..+. ....+|+||||++.|+++ +.+|+++++|||+
T Consensus 79 ----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 111111111 224589999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
+|||+.....+. ..++.+.+.|.|+|++||+ .++.+++|+++.|.+|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999997 4678887779999999998 3678999999999999998874
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.4e-20 Score=188.56 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=69.3
Q ss_pred ccCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCchHHHhcCC-
Q 005142 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL----~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvI~~~Hqp~~~i~~~~D- 263 (712)
.+..||||||||+.++.+| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||+.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4568999999998877554 5899999999999999999999999999999875 5 58999999964 4567766
Q ss_pred -eEEEEeCCeE
Q 005142 264 -RLYLLSGGKT 273 (712)
Q Consensus 264 -~v~lL~~G~i 273 (712)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888888863
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9e-20 Score=198.38 Aligned_cols=199 Identities=23% Similarity=0.275 Sum_probs=155.3
Q ss_pred ceeEEEEEeEEEEEEccCCccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC
Q 005142 48 VSARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS 126 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~ 126 (712)
.+-.+.+.++++.+. .+. +++.+++..++.-+-.+++|+||+||||++|++.|-+.|. .|-+.+++
T Consensus 359 ~~p~l~i~~V~f~y~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------ 425 (582)
T ss_pred CCCeeEEEeeeccCC----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------
Confidence 344688888887763 223 7999999999999999999999999999999999987764 77776654
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsI 205 (712)
+.+++|-.|...=+-.+.|.+- .+....+ |. .++ +..++-+..+||+.. +.. .+.+||||||-||++
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-KTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAF 493 (582)
T ss_pred cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-CCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHH
Confidence 2568888887543334445443 2322322 22 233 445667888999643 222 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
|.....+|.+|+|||||+.||..+-..+.+.|+.. +-.||++||+ .+.+-.+|+.+++.++|++.-
T Consensus 494 A~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 494 AACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999888877 4589999999 578889999999999999874
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=198.38 Aligned_cols=168 Identities=29% Similarity=0.446 Sum_probs=129.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-------------CC-----Cc------CcEEEEe
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-------------KL-----SF------GTAAYVT 134 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-------------~~-----~~------~~~~yv~ 134 (712)
.++|++++|+||||-||||-+|+|+|.+.|+. |+- ++.+. .. .. .+.-||.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 57999999999999999999999999998862 321 22110 00 00 0112333
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC
Q 005142 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (712)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~ 214 (712)
--+..+.. ||+|-|.-. +.+-..+++++.++|++..|+.+ +.|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 33333444 777766422 11235788999999999988865 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
++++|||||-||...+....+.++++++.+++||++.||. .-+--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999999899999999995 445557898888874
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=7.3e-19 Score=173.92 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 195 LSGGerqRvsIA~aL~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +..+.+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 35678999999974
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=197.06 Aligned_cols=127 Identities=31% Similarity=0.451 Sum_probs=104.8
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC---CEEEEe
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLD 219 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P---~llllD 219 (712)
|||.|...|.... + .-.+.-+.|..+||.-. .+|. ....|||||.|||-+|.+|..+. .+++||
T Consensus 784 MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 784 MTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred ccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 6777777665431 1 12344567788898632 2342 45679999999999999999877 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 005142 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (712)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 284 (712)
|||+||-.+...++++.|.+|..+|.|||++.|.. ++.+.+|.|+-| ..|++++.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999999985 689999999999 4689999999998865
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=3e-18 Score=213.39 Aligned_cols=127 Identities=25% Similarity=0.330 Sum_probs=103.6
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEEe
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLD 219 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~---P~llllD 219 (712)
|||.|.+.|... ..+-.+.-+.|.++||.... .|. ....|||||.||+-||.+|..+ +.+++||
T Consensus 1661 mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1661 TPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred CCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 577776666522 11223455678889986432 232 4457999999999999999875 7899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 005142 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (712)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 284 (712)
|||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| +.|++++.|+++++..
T Consensus 1728 EPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1728 EIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999999995 578889999999 4689999999998764
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=184.46 Aligned_cols=186 Identities=26% Similarity=0.359 Sum_probs=140.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEecCCCcCcEEEEecCC-CCCC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDD-NLIG 141 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~-~l~~ 141 (712)
...+|+|||+.++||++++|+|+|||||||||++|+|.... ..+.+|.|.+--.. ..+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 45789999999999999999999999999999999996421 11346776552211 234555542 2244
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005142 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (712)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP 221 (712)
..|+.|.+.-- +.. -....++|...||.+.. .-....++||-|||.|+.||.++..+|.+++.||-
T Consensus 469 ~~tilehl~s~-----tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRSK-----TGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhhc-----cCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 55777766411 111 13356788999997542 22235578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEE
Q 005142 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTV 274 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv 274 (712)
-+.||..++..+.+-|.++++ .|.|++++||+| +.+-.+ =|.++++.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 999999999999999999997 599999999997 344455 5888888766553
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=5.7e-19 Score=191.80 Aligned_cols=187 Identities=23% Similarity=0.316 Sum_probs=137.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|.++|+-+-.+ ....+...++|++++|-.+.|.||||||||+|.++|+|+-+-. .|... ..+...+
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~------~P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLS------IPRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeee------cCCCcce
Confidence 477777765442 3456889999999999999999999999999999999987642 34332 2333568
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhh---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCChHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSAR---LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~----~~~~~LSGGerqRv 203 (712)
-|+||.|.+-. -|.||.+.|.-. ++. .+.+ ++....+|+.+.|++....-.|= ....-||||||||+
T Consensus 548 FYIPQRPYms~-gtlRDQIIYPdS~e~~~~-kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 548 FYIPQRPYMSG-GTLRDQIIYPDSSEQMKR-KGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred EeccCCCccCc-CcccceeecCCcHHHHHh-cCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 99999998763 488887765321 110 0111 23455667777776654443331 12346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~ 261 (712)
.+||.+-++|+.-+|||.||+........+.+..+. .|.+.|-++|+|+ ++++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKY 674 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHH
Confidence 999999999999999999999988888888777655 4899999999996 3444
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.77 E-value=8.3e-19 Score=176.60 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=106.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.+... ..+++|.+.+|+.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45778887665 79999999999999999999988542 1123433211 1366777889999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
+.++... ...+. +++.++++.+++ .+|+++++|||++|+|+.
T Consensus 80 l~~~~s~------~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9875321 12222 557777776652 699999999999999999
Q ss_pred HHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhc--CCeEEEE
Q 005142 229 AAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL 268 (712)
Q Consensus 229 ~~~~i~~-~L~~l~~~g~tvI~~~Hqp~~~i~~~--~D~v~lL 268 (712)
.+..+.. .++.+.+.|.|+|++||++ ..+... .+++-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 9988754 6888877899999999996 344433 3444443
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=1.1e-18 Score=178.64 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=115.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE-EEecCCCCCCCCCHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~ 146 (712)
.+.+.+|++++.++|++++|.||||+||||||+.++-.. . ..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~-la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV------------------L-MAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH------------------H-HHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999987210 0 01122 5554432111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 005142 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL--~~~P~llllDEP--- 221 (712)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344555665332 247999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|++||..+.... .++.+.+ .|.++|++||+ .++.+++|++..+++|++.+.++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3345544 58999999996 57899999999999999987764
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.3e-18 Score=178.75 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.|||||+||+++|++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|+++|+|. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999974 568999999998
Q ss_pred CCe
Q 005142 270 GGK 272 (712)
Q Consensus 270 ~G~ 272 (712)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=5e-18 Score=165.38 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++ ++.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 399999999999999987 7899999999999999999999999998866689999999996 4667899999986
Q ss_pred C
Q 005142 270 G 270 (712)
Q Consensus 270 ~ 270 (712)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=5.6e-17 Score=194.52 Aligned_cols=136 Identities=25% Similarity=0.389 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005142 140 IGTLTVRETISYSARLRLPDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (712)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~ 212 (712)
+..+||.|.+.|...+..+.... .++..++++ .|+.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 35689999999965443221000 113344554 6888899765 56644 57999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 213 P--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
| ++|+|||||+|||+..+..+.+.|++++++|.|||+++|++ .++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999988899999999996 455 569999999 999999999998764
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.2e-17 Score=193.26 Aligned_cols=135 Identities=27% Similarity=0.353 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005142 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P 213 (712)
-.|||.|.+.|...+.++..... ++..+++ +.+..+||... .++ .+..|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988766533211000 1122222 23667788654 454 45679999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 214 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999996 444 589999999 899999999998764
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=4.7e-16 Score=163.99 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=63.2
Q ss_pred cCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 005142 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~---------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~ 262 (712)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. .++..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999997753 355555553 3566666
Q ss_pred ---CeEEEEeCCeE
Q 005142 263 ---DRLYLLSGGKT 273 (712)
Q Consensus 263 ---D~v~lL~~G~i 273 (712)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=3e-17 Score=165.67 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=103.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005142 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (712)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 154 (712)
.++++.+|++++|+|||||||||||++|++..-.. ..|.... .....++|..|. +..++..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~------~~~~~i~~~dqi---~~~~~~~d~------ 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP------AESASIPLVDRI---FTRIGAEDS------ 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc------ccccccCCcCEE---EEEecCccc------
Confidence 45556689999999999999999999999532110 1221110 001122332221 111111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005142 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (712)
Q Consensus 155 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~ 234 (712)
.+. ....++++++ |++.+.+++.+|+++++||||+|||+.....+.
T Consensus 85 ----------------------------i~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ----------------------------ISD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------ccC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 011 1123555555 577778889999999999999999999888876
Q ss_pred H-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 235 Q-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 235 ~-~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
. .++.+.+.+.++|++||++ ++.+.+|++..+.+|++...++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4666777789999999984 6778899999999999998876543
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1e-16 Score=170.54 Aligned_cols=214 Identities=22% Similarity=0.306 Sum_probs=148.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCC---CceeEEEECCEe
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNA---FLSGTILLNGHK 122 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~---~~~G~I~i~G~~ 122 (712)
.+.|.++|.+.+. ..+.++.|-|++|-.|.-++++||||-||||||+-|+.+- +|+. ..+-+|..+..+
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcH
Confidence 4668888888765 4577999999999999999999999999999999999873 3321 012233333221
Q ss_pred -cC----CCcCcEEEEecCC-----CCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005142 123 -TK----LSFGTAAYVTQDD-----NLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (712)
Q Consensus 123 -~~----~~~~~~~yv~Q~~-----~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (712)
++ ...++...+..++ .--...|+.|-+.-.+ .++.- .....+.++..+|.-+|.+.....+ .
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~r----P 409 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQER----P 409 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcC----C
Confidence 00 0001111111110 0012346666654332 22211 1122345677888888886543322 3
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
...+|||-|-||++||||...|.+|.|||||+.||-.+...+-+.|+.+. +|.++++||- ..+-..|..||.|.+-
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQ 485 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhh
Confidence 45699999999999999999999999999999999999999989998884 6999999995 6788899999999887
Q ss_pred eEEE-ecC
Q 005142 272 KTVY-FGE 278 (712)
Q Consensus 272 ~iv~-~G~ 278 (712)
++-| .|.
T Consensus 486 kLhyYrGN 493 (807)
T KOG0066|consen 486 KLHYYRGN 493 (807)
T ss_pred hhhhhcch
Confidence 7653 344
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=7.5e-16 Score=155.63 Aligned_cols=142 Identities=20% Similarity=0.304 Sum_probs=101.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
++.+.+|+++.+++|++++|+||||+|||||++++++..-- +++ | .|| +.....+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 45789999999999999999999999999999999876311 000 0 133 23345566666
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
++... ++..+..+. ..+.+|+|++|+ +.+.+++.+|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66422 122211111 224589999865 566778899999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 005142 228 AAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 228 ~~~~~i~-~~L~~l~~~g~tvI~~~Hqp~~~i~~~~ 262 (712)
.....+. ..++.+.+.|.++|++||+. ++.+.+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 8766654 56777877899999999984 344443
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.59 E-value=5.5e-15 Score=150.76 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=107.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
+.+.+|++++.++ ++++|.|||||||||||+.+++..-.. ..| .........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~~g------~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--QIG------SFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--ccC------Ceeccccceecceee---EeccCCchhh
Confidence 4588999999887 999999999999999999998753211 112 121112245667654 5566777776
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC---CCCC
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP---TSGL 225 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP---TsgL 225 (712)
+..+.. . . ..|.++++-+...+.+|+++++||| |+++
T Consensus 86 ls~g~s-------------~--------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 86 LAGGRS-------------T--------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hccCcc-------------h--------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 643210 0 0 1233334444444679999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 226 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 226 D~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 87552 23345555555 89999999994 67889999888889998877766554
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.53 E-value=5.9e-14 Score=149.98 Aligned_cols=177 Identities=22% Similarity=0.346 Sum_probs=133.6
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCC
Q 005142 68 THNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (712)
Q Consensus 68 ~~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (712)
.+.-+.+..+.|+.| |++..+|+||.||||++++++|+++|+. .|+|-. -.++|=||.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCcccc
Confidence 345567777777776 6889999999999999999999998862 344321 236777777443344
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPT 222 (712)
-|||+.+.--.+-. . ...+.+.++++-|-+++..|..| .+|||||.|||++|..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~a---y----~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRDA---Y----MHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHhh---h----cCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 59998875322110 1 11245677777787887777754 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 223 SGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
+-||++.+..--+.+++.- +.++|-.++.||-. -.--++||+++.
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf 530 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVF 530 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEE
Confidence 9999999999999998864 56799999999942 223468888764
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.52 E-value=2.9e-14 Score=149.61 Aligned_cols=137 Identities=28% Similarity=0.322 Sum_probs=91.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C---cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S---FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
.-++|+||||||||||+++|+|.+.++ +|+|.++|++... . .+.+++++|.+ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 678999999999999999999999886 8999999987531 1 12345666654 223334433210
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~ 236 (712)
+ ..| .....+..+|+++++|||++ ...+...
T Consensus 182 ------k--------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------K--------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------H--------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 0 001 12233336999999999974 2334444
Q ss_pred HHHHHhCCCEEEEEeCCCchH-H-----------HhcCCeEEEEeCCeEEEecChhh
Q 005142 237 LRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 237 L~~l~~~g~tvI~~~Hqp~~~-i-----------~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
++.+ +.|.|+|+++|++.-+ + ..+||++++|++|+ ..|.+++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 4444 4699999999986431 2 26799999999876 5555543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.46 E-value=4.2e-14 Score=140.85 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
..+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 457887776433332 34599999999999999999888775 556777764 89999999995 57888876444444
Q ss_pred CeEEE
Q 005142 271 GKTVY 275 (712)
Q Consensus 271 G~iv~ 275 (712)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 54443
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=5.1e-12 Score=138.70 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC-
Q 005142 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~---------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~- 262 (712)
..+|.||+|++.||+.|+ .+|+++++|||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 468999999999999885 799999999999999999999999988764 458899999853 444443
Q ss_pred -CeEEEEeCCeE
Q 005142 263 -DRLYLLSGGKT 273 (712)
Q Consensus 263 -D~v~lL~~G~i 273 (712)
++++.+.+|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=9.8e-14 Score=141.58 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005142 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (712)
Q Consensus 168 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (712)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 344555655555322 59999999999997764 46789999999999999999999999999865
Q ss_pred CCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 244 g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
+.-+|++||++ .+++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 6899999998774
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=7e-13 Score=157.52 Aligned_cols=129 Identities=21% Similarity=0.221 Sum_probs=90.4
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEecCCC-CCCCCCHHHHHH
Q 005142 74 GLTGYAEPG-TLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIGTLTVRETIS 150 (712)
Q Consensus 74 ~vs~~i~~G-e~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~-l~~~lTV~E~l~ 150 (712)
.+|+.+.+| ++++|.||||+||||||++|+|.. .+. .| .+||.... .+ .+.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~~~---~~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHSEI---PYFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCccccc---cchhhee
Confidence 378888887 999999999999999999999872 221 22 13333221 11 1111110
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005142 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~ 230 (712)
.. .. .. +.+ . .....+|+|+++++.|++.+ .+|+++|+|||++|+|+...
T Consensus 371 --~~--i~----~~---~si---~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 371 --AD--IG----DE---QSI---E---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred --ee--cC----hH---hHH---h---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHH
Confidence 00 00 00 001 0 02245899999999998876 89999999999999999999
Q ss_pred HHH-HHHHHHHHhCCCEEEEEeCCC
Q 005142 231 FFV-TQTLRCLSRDGRTVIASIHQP 254 (712)
Q Consensus 231 ~~i-~~~L~~l~~~g~tvI~~~Hqp 254 (712)
..+ ...|+.+.+.|.++|++||++
T Consensus 421 ~ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 421 SALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChH
Confidence 999 567888888899999999995
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=2e-12 Score=131.70 Aligned_cols=128 Identities=25% Similarity=0.234 Sum_probs=86.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCC-CCCHHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG-TLTVRE 147 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~-~lTV~E 147 (712)
|-+|+++.=..+..++|.||||+||||||+.++. .+.. .|...... ...++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 4455554322238999999999999999999983 3321 45443321 134677777532221 111111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIA~aL~~~P~llllDEPTsgL 225 (712)
++| --|-||++++++++.+|+++++|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 35679999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 005142 226 DSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (712)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~---g~tvI~~~Hqp 254 (712)
|+.....+ ...++++.+. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99765555 5688888764 35899999995
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.36 E-value=1e-12 Score=118.30 Aligned_cols=72 Identities=18% Similarity=0.045 Sum_probs=59.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----CCcCcEEEEecCCCCCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTL 143 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~l 143 (712)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ...+..+|++|+ +|..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 588999998742 123456777777 5554
Q ss_pred CHHHHHHHH
Q 005142 144 TVRETISYS 152 (712)
Q Consensus 144 TV~E~l~~~ 152 (712)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.33 E-value=3e-12 Score=137.07 Aligned_cols=188 Identities=26% Similarity=0.321 Sum_probs=127.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEEC------CEecCCCc--------C---cEEEEecCCCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLN------GHKTKLSF--------G---TAAYVTQDDNLI 140 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~I~i~------G~~~~~~~--------~---~~~yv~Q~~~l~ 140 (712)
+||++.+++|.||-||||-|++++|.++|+.. ..+-.+-+ |....... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 68999999999999999999999999988620 01100000 00000000 0 001222211111
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005142 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDE 220 (712)
. .+|.++|. ....+...+++++.+.|.+..|+-+ ..|||||-||.+||++-+.+.+++++||
T Consensus 178 k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 13333332 1122234566777788887777755 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC-----CeEEEecChhhHHHHH
Q 005142 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAFEFF 286 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~-----G~iv~~G~~~~~~~~f 286 (712)
|.+-||...+..-...++.+...++=||++.||. +-+.-+.|-++.|.. |-+.---+..+..+.|
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 9999999999999999999998889999999996 445557899999874 4444433455555544
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=2.3e-11 Score=124.47 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=90.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
+.+.+|+++.+++|++++|+||||+||||+++++++. +.+. .|...... . -.++|..|- +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~a~-~-----~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVPAS-S-----ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEEcC-c-----eEEeccceE---EEEecCcc
Confidence 5689999999999999999999999999999999983 3332 56543321 1 112332221 11101111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIA~aL~~~P~llllDEPTsgL 225 (712)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 23445555555566789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCchHHHhcC
Q 005142 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~ 262 (712)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777775 4667777775 89999999996 344444
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.28 E-value=1.3e-11 Score=128.31 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=105.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CEe-cCC-----CcCcEEEEecCCCCCCCCCH---
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GHK-TKL-----SFGTAAYVTQDDNLIGTLTV--- 145 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~--G~~-~~~-----~~~~~~yv~Q~~~l~~~lTV--- 145 (712)
..+.+||.++|+||+|+|||||++.|++...... ....+.+- |++ .+. ....+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 4688999999999999999999999998775420 01222211 111 000 0011222232222 110000
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH--------HHHHHHHHHHhhCCCEEE
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--------RRRVSIALEILMRPRLLF 217 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe--------rqRvsIA~aL~~~P~lll 217 (712)
+.-+..+..++.. +..- --.++++ -.+.+..++.+|. ....+|||+ +||+++|+++..+++|.+
T Consensus 89 ~~~~~~a~~~~~~-G~~v---ll~iDei---~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 89 EMVLEKAKRLVEH-GKDV---VILLDSI---TRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHC-CCCE---EEEEECH---HHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0111111111000 0000 0000000 0112233444443 345689999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 218 LDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 218 lDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
+ ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9 999999755554 55 5566556789999999964 4689999999999987
No 428
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.27 E-value=3e-10 Score=117.13 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=152.6
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccC-CCC--hhhHH----HHHHHHHHHHHHHHHHHHhhHhHHHHhhccc
Q 005142 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSIL----ARGSCASFVFGFVTFMSIGGFPSFVEDMKFC 464 (712)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l-~~~--~~~i~----~r~g~lff~~~~~~f~s~~~~p~~~~er~f~ 464 (712)
|+++...|||..+..-+++-+++.+++|.++-+. +.+ ..+.. --.|.+.+.....+.. .+. ....||.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~-~~~~~~~-- 75 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGI-SVIWDRQ-- 75 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhh-HHHHHHH--
Confidence 6778889999888888888888888888877542 111 11111 1112222221111111 111 1222333
Q ss_pred CcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005142 465 NIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASI 544 (712)
Q Consensus 465 ~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~ 544 (712)
+.++ ++....--+...|++||.+.+++..++..+++..+.|++.+++. ..++.+++.+++...+..++|.++++.
T Consensus 76 --~g~~-~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~ 150 (236)
T TIGR01247 76 --FGFL-KEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAAR 150 (236)
T ss_pred --hCHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 12112233578999999999999999999999999998877554 334444455556667788999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCCCCccHHHHHh
Q 005142 545 VPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE 624 (712)
Q Consensus 545 ~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~~~~~G~~~L~ 624 (712)
+++.+.+..+.+.+..+++++||.+.|.+.+|+ |..|+.|++|.+|+.|++-..-. |..
T Consensus 151 ~~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~-~~~------------------ 209 (236)
T TIGR01247 151 MDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLA-GVS------------------ 209 (236)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHh-CCC------------------
Confidence 999998888888888888999999999999996 44459999999999998554321 100
Q ss_pred hhcCcccccchhHHHHHHHHHHHHHHHHHHH
Q 005142 625 NVFQIDVRRSKWIDLSVIFSMIISYRIIFFV 655 (712)
Q Consensus 625 ~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~ 655 (712)
.. .+.|.++++|+++.+++.+++..
T Consensus 210 -----~~-~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 -----PT-FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred -----cc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 00 13567889999999888777653
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.25 E-value=7.2e-12 Score=127.36 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPT-----sgLD~~~~~~i~~~L~~l~~ 242 (712)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.24 E-value=1.6e-11 Score=142.47 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~----P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ ++|||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999973 45799999999
Q ss_pred eCCe
Q 005142 269 SGGK 272 (712)
Q Consensus 269 ~~G~ 272 (712)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 431
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.23 E-value=3.3e-10 Score=114.62 Aligned_cols=152 Identities=9% Similarity=0.043 Sum_probs=120.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 005142 479 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 558 (712)
Q Consensus 479 Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~ 558 (712)
-+...++++|.+..++..++.+++...+.|++.|++.. +++.+++.+++..++..+++.++++++++...+ ++...
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 34567799999999999999999999999999999874 456666777778888899999999999876443 44444
Q ss_pred HHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCCCCccHHHHHhhhcCcccccchhHH
Q 005142 559 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID 638 (712)
Q Consensus 559 ~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~ 638 (712)
..+.++++|.+.|.+.+|+ |..|+.|++|.+|+.+++....+.| . ..+.|.+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~ 184 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQA 184 (208)
T ss_pred HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHH
Confidence 5566678898899999996 4446999999999999997665422 0 1236889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 005142 639 LSVIFSMIISYRIIFFVMIKISED 662 (712)
Q Consensus 639 ~~iL~~~~~~f~~l~~~~L~~~~~ 662 (712)
+++|+++.+++.++++...|.++|
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999998887775543
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.1e-10 Score=133.95 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH------HHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005142 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVER------TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (712)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~------~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P 213 (712)
+..+++.|.+.|...+.+... ...-.+..+.+ .|..+||.... -++....|||||.||+-+|..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 346788888888877654321 11111122222 23445665321 12234579999999999999997754
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 005142 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (712)
Q Consensus 214 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 284 (712)
=+++||||+-||-+..-..+++.|++|++.|-|+|++.||+ +....+|+|+-+ ..|+|++.|+++++.+
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 47899999999999999999999999999999999999995 688999999998 5799999999999874
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.21 E-value=3.7e-11 Score=138.55 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +..++|+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 579999999999999997 5899999999999999999999999999975 699999999973 568999999998
Q ss_pred CC
Q 005142 270 GG 271 (712)
Q Consensus 270 ~G 271 (712)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 65
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.21 E-value=1.3e-10 Score=119.93 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=93.3
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTL-L~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
-+++|++++|.|+|||||||| ++.+++..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 389999999999999999999 68888765432 123455532 25556655543332
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~----~~P~llllDEPTsgL----D~~ 228 (712)
.. +++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~~-----------~~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 YD-----------INKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred Cc-----------hHHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 10 1111111 10000010 1 136777655544444332 379999999999999 778
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEEe
Q 005142 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (712)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~Hqp~~------~i~~~~D~v~lL~ 269 (712)
....+.+.++.+++.|.|+++++|+... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888999999998888888777664320 1233567777775
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.21 E-value=1.2e-11 Score=147.33 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. .+..+.+.|.++|++||++ ......+|+..+ .++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v-~~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGV-ENA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCe-EEE
Confidence 46999999999999988 8999999999999999999988865 5777777899999999995 333333444433 355
Q ss_pred eEEEe
Q 005142 272 KTVYF 276 (712)
Q Consensus 272 ~iv~~ 276 (712)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.20 E-value=3.2e-10 Score=126.66 Aligned_cols=172 Identities=22% Similarity=0.290 Sum_probs=113.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---C------C----CcCcEEEEec
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVTQ 135 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~---~------~----~~~~~~yv~Q 135 (712)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.+|.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 5689999 999999999999999999999999999998875 79999976542 1 1 1246788876
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHhhCCC
Q 005142 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRPR 214 (712)
Q Consensus 136 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRvsIA~aL~~~P~ 214 (712)
.+.-. -.+....+.+ -.+.|.+...|- |..+- ...++- -|-+| ++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~r-----Eis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQR-----EIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHHH-----HHH----
Confidence 54311 1111111111 112223322232 21110 111210 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 215 LLFLDEP--TSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 215 llllDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
+.+.|| |+|+|+.....+.+.++++.. +|. ||++.+||.. + .++|++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence 112454 679999999999999999974 675 9999999975 2 7899999999999999998753
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=4.8e-11 Score=147.80 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=73.9
Q ss_pred ccCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh
Q 005142 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~~----------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~ 260 (712)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++|||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 567899999999999999986 7999999999999999999999999999988899999999996 56888
Q ss_pred cCCeEEEEeCC
Q 005142 261 LFDRLYLLSGG 271 (712)
Q Consensus 261 ~~D~v~lL~~G 271 (712)
++|+|.+++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.17 E-value=2.8e-10 Score=112.68 Aligned_cols=145 Identities=24% Similarity=0.233 Sum_probs=95.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHH
Q 005142 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS 164 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~ 164 (712)
+.|.||+|+|||||.--++-.... +| +.+.|+.=+ .|..+.+.....+. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~-- 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTLE------ESPEELIENAESLG----WD-- 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEECC------CCHHHHHHHHHHcC----CC--
Confidence 679999999999998755421111 11 223454321 25555554433321 11
Q ss_pred HHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 005142 165 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVTQ 235 (712)
Q Consensus 165 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq------RvsIA~aL~~~P~llllDEPTsgLD---~~~~~~i~~ 235 (712)
.++ +...|+....|. .+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 53 -----~~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 53 -----LER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred -----hHH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 111 122343333332 44578999998 4444455667999999999999999 888888889
Q ss_pred HHHHHHhCCCEEEEEeCCCch--------HHHhcCCeEEEEe
Q 005142 236 TLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (712)
Q Consensus 236 ~L~~l~~~g~tvI~~~Hqp~~--------~i~~~~D~v~lL~ 269 (712)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998643 2567899999886
No 439
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.17 E-value=4.4e-11 Score=138.86 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.7
Q ss_pred ccCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 005142 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~----------~~P~llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~ 259 (712)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++ +..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34679999999999999887 599999999998 789999999999999998 589999999996 356
Q ss_pred hcCCeEEEEeC-CeE
Q 005142 260 ELFDRLYLLSG-GKT 273 (712)
Q Consensus 260 ~~~D~v~lL~~-G~i 273 (712)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 544
No 440
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.16 E-value=8.3e-11 Score=119.46 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=53.8
Q ss_pred cCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005142 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp 254 (712)
...+|.|+||.+.++..+...+ .++++|||-++|+|.....+++.|+.+++.+.-+|+|||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 3457999999999999888766 89999999999999999999999988877678999999997
No 441
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.15 E-value=3.4e-09 Score=110.88 Aligned_cols=232 Identities=12% Similarity=0.069 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHHHh-h-HhHHHHhhc
Q 005142 386 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-G-FPSFVEDMK 462 (712)
Q Consensus 386 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~r~g~lff~~~~~~f~s~~-~-~p~~~~er~ 462 (712)
...+.+|+++..+|+ |.....-+++-++.-+++|..+-....+..+ .+ -.-|.+-+.+.+..+. + ..... .
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~--y~~f~~pg~l~~~~~~~~~~~~~~---~ 80 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VS--YAAFLAAGMVATSAMTASTFETIY---A 80 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CC--HHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 456679999999999 8888888888888888888876543111111 11 1122222222221110 0 00000 0
Q ss_pred ccCcceeEEeeccCCc--------cchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q 005142 463 FCNIFQVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV 534 (712)
Q Consensus 463 f~~~~~vf~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~ 534 (712)
.+.|||.+|. -++..+.+|+.+.+.-..++..++...+.++ .|..+. ...+.++..+++..++.
T Consensus 81 ------~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~ 152 (253)
T TIGR01291 81 ------TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAF 152 (253)
T ss_pred ------HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHH
Confidence 1223333333 2678899999998877666666665555443 344433 33444444445566667
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCC
Q 005142 535 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 614 (712)
Q Consensus 535 ~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~ 614 (712)
.++|++++++.++.+.+..+...+..+++.+||.+.+.+.+|+ |..++.+++|+.|+.|++-.. +.|.
T Consensus 153 ~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~-~~g~--------- 220 (253)
T TIGR01291 153 ASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPV-MLGG--------- 220 (253)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHH-HhCC---------
Confidence 7899999999999998888888999999999999999999997 444588999999999985443 2110
Q ss_pred CCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005142 615 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 659 (712)
Q Consensus 615 ~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~ 659 (712)
+ ..+.|.++++++++.+++.+++....|.
T Consensus 221 ---------------~-~~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 221 ---------------P-GTQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred ---------------C-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0124567888999888888887765554
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=2.9e-10 Score=116.08 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=88.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
++.+-+|+++..++|++++|.||||+||||+++++++..--. ..|. ........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999998753210 0111 10000011111 112222222222
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIA~aL~~~P~llllDEPTsgL 225 (712)
++.. ++| ..|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 005142 226 DSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (712)
Q Consensus 226 D~~~~~~i~~~-L~~l~~~-g~tvI~~~Hqp 254 (712)
|+.....+... ++.+.+. +.++|++||++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 99999999888 7778775 89999999995
No 443
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.09 E-value=9.2e-09 Score=105.99 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=135.7
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhcccCcceeEEeeccC
Q 005142 398 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMKFCNIFQVFQRERLN 476 (712)
Q Consensus 398 ~Rd~~~~~~r~~~~i~~~l~~G~if~~l~~~~~~i~~-r~g~lff~~~~~~f~s~~~~p~~~~er~f~~~~~vf~rE~~~ 476 (712)
+|||.....-+.+-+++-++++.+|-+-. +.+..+. ..+.+.+...+.+++ ..--....||. ...+.|=+ .
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~er~----~G~l~rl~-~ 73 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFT--GQAIAVARDRR----YGALKRLG-A 73 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHH--HHHHHHHHHHH----hCHHHHHh-c
Confidence 68999988888888888777777776521 1111111 111111111111111 11112233443 11222222 2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHHH
Q 005142 477 GHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN---FLMGII 553 (712)
Q Consensus 477 g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~---~~~a~~ 553 (712)
.=.+...|+++|.+..++..++..+++ .+++++.|++.....+ ..++.+.+....+..++.++++++++ .+.+..
T Consensus 74 ~P~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 151 (232)
T TIGR00025 74 TPLPRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLA 151 (232)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 223688999999998888877665555 4556778988654332 22333334445556677777777644 444477
Q ss_pred HHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCCCCccHHHHHhhhcCccccc
Q 005142 554 TGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRR 633 (712)
Q Consensus 554 ~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~~~~~G~~~L~~~~~~~~~~ 633 (712)
++..+..+++++||.+.|.+.+|. |..|+.+++|++|+.+++-.--..+ .+ ..
T Consensus 152 i~~~~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~------------------------~~-~~ 204 (232)
T TIGR00025 152 VANLVWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS------------------------VD-TF 204 (232)
T ss_pred HHHHHHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC------------------------CC-hh
Confidence 778888889999999999999997 5456999999999999765432111 00 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 005142 634 SKWIDLSVIFSMIISYRIIFFVMI 657 (712)
Q Consensus 634 ~~w~~~~iL~~~~~~f~~l~~~~L 657 (712)
..|.++++++++.+++..++....
T Consensus 205 ~~~~~~~~l~~~~~v~~~la~~~~ 228 (232)
T TIGR00025 205 GAVRDLVVVLAFWVALAALAAIRL 228 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889988888877776543
No 444
>PRK13695 putative NTPase; Provisional
Probab=99.08 E-value=5.1e-11 Score=117.35 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
..+||+|+-+..+++..+.+|+++++||| ..++..+ ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+|+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGR 152 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcE
Confidence 35999999999999999999999999995 2233332 445667777667789999999983 4667899999999999
Q ss_pred EEEe
Q 005142 273 TVYF 276 (712)
Q Consensus 273 iv~~ 276 (712)
+++.
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 9765
No 445
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.02 E-value=4.1e-08 Score=102.50 Aligned_cols=239 Identities=12% Similarity=0.091 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccC-CCCh----hhHHHHHHHHHHHHHHHHHH----HHhh
Q 005142 383 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGY----NSILARGSCASFVFGFVTFM----SIGG 453 (712)
Q Consensus 383 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l-~~~~----~~i~~r~g~lff~~~~~~f~----s~~~ 453 (712)
+++++.+++|.++...|||..+..-+++-+++-+++|.+|-.. +.+. .+..+ -..|.+.+...+. ++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~--y~~fl~pGi~~~~~~~~~~~~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYIT--YEVYIVPGLCCMILLFNGMQS 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCC--HHHHHHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999999888542 1100 00001 1122222221111 1111
Q ss_pred HhHHHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHH
Q 005142 454 FPSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAV 533 (712)
Q Consensus 454 ~p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~ 533 (712)
-.....||. +..+.+=+. ---+...+.+++++..+-..++..++...+.+. .|.+.+...++.....+++...+
T Consensus 79 ~~~~~~~r~----~g~~~~l~~-~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~ 152 (253)
T TIGR03861 79 SLSMVYDRE----MGSMRVLLT-SPLPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFM 152 (253)
T ss_pred hhHhHHhHh----cCHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHH
Confidence 112222222 001111111 123677889999999977777766555544432 36655544444334444555666
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCc-cccccccceecHHHHHHHHHHHHhhCCCccCCCCC
Q 005142 534 VESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPK-PVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP 612 (712)
Q Consensus 534 ~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~-~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~ 612 (712)
..++|.+++.++++......+.+.+..+++..||.+.+.+.+|. +-|..|+.++||+.|..|++-.- +.|
T Consensus 153 ~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g-------- 223 (253)
T TIGR03861 153 LGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG-------- 223 (253)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC--------
Confidence 77999999999999888877888888888899999988877642 12555688899999999877542 211
Q ss_pred CCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 005142 613 DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 658 (712)
Q Consensus 613 ~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~ 658 (712)
+ ..|..+++++++.+++..++....|
T Consensus 224 ---------------~-----~~~~~~~~~~~~~~v~~~~~~~~fr 249 (253)
T TIGR03861 224 ---------------Q-----LNLPALGWTLGATTLFTLLAFWGFD 249 (253)
T ss_pred ---------------C-----cchhHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0245566777777777777665443
No 446
>PRK03918 chromosome segregation protein; Provisional
Probab=99.01 E-value=7.3e-10 Score=135.40 Aligned_cols=77 Identities=30% Similarity=0.304 Sum_probs=68.4
Q ss_pred ccCCCChHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 005142 191 HLRGISGGERRR------VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (712)
Q Consensus 191 ~~~~LSGGerqR------vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~ 264 (712)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|..++..+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 456799999995 5555678899999999999999999999999999999877788999999996 46789999
Q ss_pred EEEEe
Q 005142 265 LYLLS 269 (712)
Q Consensus 265 v~lL~ 269 (712)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99997
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.00 E-value=5.7e-09 Score=125.85 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=60.9
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH---------hcCCeEEEEeCCeEEEecCh
Q 005142 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 210 ~~~P~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~---------~~~D~v~lL~~G~iv~~G~~ 279 (712)
..+|.++++|||+.+| |+..+..+.+.++++++.|.++|++||+|. ++. +.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999888999999999974 443 68999999999998776643
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.00 E-value=5.4e-09 Score=101.75 Aligned_cols=63 Identities=25% Similarity=0.363 Sum_probs=52.9
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
....|.||-=---+.+. .++.-++|||||-++|.+.-+..++..|+++++.|.-+||.||.|.
T Consensus 127 Lh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 44579999654444333 4567899999999999999999999999999999999999999983
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.99 E-value=2.5e-09 Score=102.25 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~ 257 (712)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888888999999999999994 4555555666666666655799999999987543
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.99 E-value=1.3e-09 Score=117.29 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=94.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CCC-cCcEEEEecCCCCCCCCCHHHHHHHH
Q 005142 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (712)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (712)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+++... ... ...+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 55778899999999999999999999999998765 56677653211 110 011111111000
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005142 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (712)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~ 232 (712)
+ + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 -------------------------------~---~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 -------------------------------Q---G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------------C---C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 000111 1134556778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 233 i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+.+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766543346799999965 56779999999999988888777654
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=1.5e-09 Score=134.19 Aligned_cols=80 Identities=29% Similarity=0.278 Sum_probs=69.6
Q ss_pred cccCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc
Q 005142 190 WHLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (712)
Q Consensus 190 ~~~~~LSGGerqRvsIA~aL~~--------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~ 261 (712)
..++.|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||.+ ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 3567899999999999999996 8999999999999999999999999999988899999999974 344455
Q ss_pred CCeEEEEeC
Q 005142 262 FDRLYLLSG 270 (712)
Q Consensus 262 ~D~v~lL~~ 270 (712)
-.+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.7e-09 Score=136.89 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=65.0
Q ss_pred cccccCcccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 005142 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (712)
Q Consensus 184 d~~vg~~~~~~LSGGerq------RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~~H 252 (712)
|+.++. ...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++||
T Consensus 1191 ~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 565552 3579999999 99999999999999999999999999999999999988742 4789999999
Q ss_pred CCchHHHhcC
Q 005142 253 QPSSEVFELF 262 (712)
Q Consensus 253 qp~~~i~~~~ 262 (712)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 96 5666654
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=2.3e-09 Score=118.98 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=116.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~ 131 (712)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+..
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg-------- 194 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG-------- 194 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------
Confidence 44455554442 234578885 999999999999999999999999999988764 67776655421
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~- 210 (712)
.+|+|.+..... .-|+.+. ..+ .....-|.|+|+|+..+.+.+
T Consensus 195 -----------~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 195 -----------REVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred -----------ccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 367666543211 1122111 111 123467999999999988887
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 211 ------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
.++-++++|+||+..|+. .++-..+.+.-..|.+..+.+|. +.+++.+-+ ..+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHHHhcc---CCCcceEEEEEE
Confidence 789999999999999986 55555555555458888888885 345554444 478888766643
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.92 E-value=3e-08 Score=102.33 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=99.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
-|+.+ .+-+++|.++.|.|++|+|||||...++- .... | +.+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g-------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----------G-------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----------C-------CEEEEEEcCC------CHHHH
Confidence 45554 56799999999999999999999988752 1111 1 2355665532 33443
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG-- 224 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~--~P~llllDEPTsg-- 224 (712)
+.-...+.. . +++.+. .|.-...+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~----~-------~~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI----D-------ISDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC----C-------hhHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 332222211 1 011110 011111111111 112346788999999999997 9999999999965
Q ss_pred -CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhcCCeEEEEeC
Q 005142 225 -LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLSG 270 (712)
Q Consensus 225 -LD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~------~i~~~~D~v~lL~~ 270 (712)
+|......+++.++.+++.|.|+++++|++.. .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 44555556666677777789999999998642 14566777777763
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=4.4e-09 Score=128.84 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=66.7
Q ss_pred ccCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-C-CEEEEEeCCCchHHHhc
Q 005142 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D-G-RTVIASIHQPSSEVFEL 261 (712)
Q Consensus 191 ~~~~LSGGerqRvsI------A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~tvI~~~Hqp~~~i~~~ 261 (712)
.+..|||||++|++| |++++.+|++++|||||+|||+.....+.+.|+...+ . | .|||++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 467899999999976 4889999999999999999999999999999986543 3 3 4899999996 35689
Q ss_pred CCeEEEEe
Q 005142 262 FDRLYLLS 269 (712)
Q Consensus 262 ~D~v~lL~ 269 (712)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 456
>PRK15066 inner membrane transport permease; Provisional
Probab=98.85 E-value=6.6e-07 Score=93.77 Aligned_cols=244 Identities=13% Similarity=0.168 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHhccc-CCCChhhHHHHHHHHHHHHHHHHHH----HHhhH-
Q 005142 382 FLMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLN-VGTGYNSILARGSCASFVFGFVTFM----SIGGF- 454 (712)
Q Consensus 382 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~~G~if~~-l~~~~~~i~~r~g~lff~~~~~~f~----s~~~~- 454 (712)
.++-++.+.+|+++...||+.. ...-+++.++..+++|.++-. .+.. .+. + -..|++.+...+. ++...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999854 333444555666666666532 1110 111 1 1122222222211 11111
Q ss_pred hHHHHhhcccCcceeEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q 005142 455 PSFVEDMKFCNIFQVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV 534 (712)
Q Consensus 455 p~~~~er~f~~~~~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~ 534 (712)
..+..++. .+ .+ ++-..---+...+.+++.+...-..++..++..++.+...|.+.. ....++..+++...+.
T Consensus 82 ~~i~~~~~-~~---~~-~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f 154 (257)
T PRK15066 82 SSFFSAKF-QR---NI-EELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILF 154 (257)
T ss_pred HHHHHHHH-hh---hH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHH
Confidence 22222221 00 00 110111246778899999987666566655555555444466543 2222222333333333
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCC
Q 005142 535 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 614 (712)
Q Consensus 535 ~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~ 614 (712)
...+++++.+.++......+.+.+..+++..||.+.+.+.+|. |..|+.+++|++|..|++=..-+ |
T Consensus 155 ~~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~-g---------- 221 (257)
T PRK15066 155 SLGGLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL-G---------- 221 (257)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc-C----------
Confidence 4458888888888877777888888889999999999999996 55568999999999988754211 1
Q ss_pred CCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005142 615 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 664 (712)
Q Consensus 615 ~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~~ 664 (712)
.+ +...|.++++++++.+++.+++....|..++.|
T Consensus 222 --------------~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 222 --------------IS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred --------------CC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00 123578899999999999888888777666554
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.80 E-value=2.4e-08 Score=100.64 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
.|+++|..+|+++++|||. |.++...+ .+.+..|..++.|+|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 55543333 345567999999999974 457788887764
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.79 E-value=7e-09 Score=130.10 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.2
Q ss_pred ccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 005142 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 56689999999999999985 57799999999999999999999999999865 478999999974 457899998
Q ss_pred EEe
Q 005142 267 LLS 269 (712)
Q Consensus 267 lL~ 269 (712)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.76 E-value=5.2e-08 Score=100.98 Aligned_cols=136 Identities=29% Similarity=0.452 Sum_probs=83.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (712)
|.+..|+||+|+|||||+-.++=-.. +|.=.+.+ ... .....+.|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67899999999999999987763221 22211111 111 1123455555332
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 005142 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (712)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~----------------aL~~~P~llllDEPTs- 223 (712)
+..+..+++..+...+++.+..+... +.+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555655555443333221 1244555544433 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc
Q 005142 224 -----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS 255 (712)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~ 255 (712)
.+|+.....+++.|+++++ .|.|||+++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999999999986 5899999999863
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.71 E-value=9.7e-09 Score=113.99 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=44.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKT 123 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~i~G~~~ 123 (712)
+.+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6776664 55 899999875
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.70 E-value=3.2e-08 Score=121.10 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=66.7
Q ss_pred cCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCchHH
Q 005142 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (712)
Q Consensus 192 ~~~LSGGerq------RvsIA~aL~~~-----P-~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvI~~~Hqp~~~i 258 (712)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999988864 3 67999999999999999999999999986664 8999999963 4
Q ss_pred HhcCCeEEEEeC
Q 005142 259 FELFDRLYLLSG 270 (712)
Q Consensus 259 ~~~~D~v~lL~~ 270 (712)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.69 E-value=6.5e-08 Score=108.99 Aligned_cols=150 Identities=22% Similarity=0.296 Sum_probs=93.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETIS 150 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~ 150 (712)
++++.+..++.|++++++||||+||||++..|++.+... .|. +.+++|.+|. ...++.|+|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHHH
Confidence 466777778899999999999999999999999876432 221 2467888875 3468999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCCCCC
Q 005142 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTSG 224 (712)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq-RvsIA~aL~~~P-----~llllDEPTsg 224 (712)
+.+.... ++........+..+...+|.+....+|. ....+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 307 IYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 8776532 1111111223334445567665444443 22222322 234444555554 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 005142 225 LDSAAAFFVTQTLRCLSRDGRTVIASIH 252 (712)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~~H 252 (712)
..+.+.++.....+.+-++.|+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeC
Confidence 3345555555555555555555
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.68 E-value=3e-08 Score=124.58 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=68.3
Q ss_pred ccCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 005142 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
.+..||||||++++||++++. .|++++||||+++||+.....+.+.|++++. +.++|++||++ .....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 47899999996 3679999999
Q ss_pred EEeC
Q 005142 267 LLSG 270 (712)
Q Consensus 267 lL~~ 270 (712)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.62 E-value=9.8e-07 Score=81.01 Aligned_cols=118 Identities=31% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (712)
++..+.|.||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 467899999999999999999999876531 1344444432110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 005142 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (712)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~----- 235 (712)
... . ........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 --------------~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------LII-V---------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------hhh-h---------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 000 0 00112467788888888888877899999999999999988887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 005142 236 -TLRCLSRDGRTVIASIH 252 (712)
Q Consensus 236 -~L~~l~~~g~tvI~~~H 252 (712)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223345788999988
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.51 E-value=1.1e-06 Score=106.62 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh--cCCeEEEEeCCeEE
Q 005142 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~--~~D~v~lL~~G~iv 274 (712)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 799999999999999888999999999974 4544 23444444444444
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.50 E-value=4.8e-08 Score=111.51 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=95.5
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEecC--C--CcCcEEEEecCCCCCCCC
Q 005142 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTK--L--SFGTAAYVTQDDNLIGTL 143 (712)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~~~~G~I~i~G~~~~--~--~~~~~~yv~Q~~~l~~~l 143 (712)
-|+.+ .+=+.+|..+.|.|++|||||||..-+ .|....+ +..+++...... . ..+..||-.++..--
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc---
Confidence 35564 667999999999999999999999866 3443322 333444332110 0 011222222210000
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH--HHHhhCCCEEEEeCC
Q 005142 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEP 221 (712)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA--~aL~~~P~llllDEP 221 (712)
+++.+ + ...+. .....+++.+++.+..+.. .+.+|+|++|||.|+ .+|..+|+..
T Consensus 83 ---g~l~~---~---~~~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI---L---DASPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE---E---ecCch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 0 00000 0011122334444444432 346899999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-------H-HhcCCeEEEEe
Q 005142 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (712)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~-------i-~~~~D~v~lL~ 269 (712)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986420 2 45789999987
No 467
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.49 E-value=6.1e-06 Score=85.92 Aligned_cols=153 Identities=14% Similarity=0.223 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHH
Q 005142 482 TAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-SIVPNFLMGIITGAGIQG 560 (712)
Q Consensus 482 ~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~-~~~p~~~~a~~~~~~~~~ 560 (712)
..+++++.+...-...+...+...++.+..|... ...+..+...+.+......++|.+++ ....+...+..++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5567777777766666666666666666666322 23344444555555666677777555 366778888888888999
Q ss_pred HHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCCCCCCCCCccHHHHHhhhcCcccccchhHHHH
Q 005142 561 IFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLS 640 (712)
Q Consensus 561 ~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~~ 640 (712)
++++++|.+.|.+.+|. |..|+.++.|..|+.+++-.....+. . ..+.|.+++
T Consensus 210 ~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~------------------------~-~~~~~~~~~ 262 (286)
T COG0842 210 PLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGW------------------------R-NDGIWISLL 262 (286)
T ss_pred HHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCC------------------------c-hhhHHHHHH
Confidence 99999999999999996 65668899999999998876443211 1 112688899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 005142 641 VIFSMIISYRIIFFVMIKISED 662 (712)
Q Consensus 641 iL~~~~~~f~~l~~~~L~~~~~ 662 (712)
+++++.+++.+++...+|..++
T Consensus 263 ~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 263 ILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988876654
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.49 E-value=1.8e-06 Score=96.86 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=106.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------------CcCcEEEEec
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------------SFGTAAYVTQ 135 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-------------~~~~~~yv~Q 135 (712)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|++.+. ..+.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 5689999 999999999999999999999999999988765 6666665653110 0112233333
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHhhCCC
Q 005142 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRPR 214 (712)
Q Consensus 136 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRvsIA~aL~~~P~ 214 (712)
.+. ++.+-. +. ...--.+.+.+...|- |..+ ....|+- -|-+| ++.
T Consensus 227 ~d~-----~p~~r~------~~------~~~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------KG------AYVATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCC-----CHHHHH------HH------HHHHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-----HHH----
Confidence 221 111110 00 0011112233333342 2222 1112321 12222 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 215 LLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 215 llllDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||.. ..++|++.-+.+|+++..+...+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234675 459999999999999999887666 8888888853 35789999999999999887653
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=1.8e-07 Score=104.22 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=108.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----------CCcCcEEEEecC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 136 (712)
...+|+++ +.+.+|+.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35699999 999999999999999999999999999988775323355555554321 112368999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH-HHHHHHHhhCCCE
Q 005142 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRL 215 (712)
Q Consensus 137 ~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIA~aL~~~P~l 215 (712)
+..+..+++.|++...+......+. .|--+++ .++.. -+-+| +++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~-------~Vll~~D--sltr~---------------a~A~REisl---------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH-------DVLLLVD--SLTRY---------------AMAQREIAL---------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC-------CEEEeec--chhHH---------------HhhhhHHHH----------
Confidence 9999999999999877664321110 0000000 01100 01111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh-C--C-CEEEEEeCCCchHHHh-cCCeEEEEeCCeEEEe
Q 005142 216 LFLDEP--TSGLDSAAAFFVTQTLRCLSR-D--G-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (712)
Q Consensus 216 lllDEP--TsgLD~~~~~~i~~~L~~l~~-~--g-~tvI~~~Hqp~~~i~~-~~D~v~lL~~G~iv~~ 276 (712)
.+.|| +.|-.+.-...+-+++.+... + | .|.+.+..-+..++-+ .+|.+.-+-||+++-.
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12343 236666666667777766532 2 3 5777776655444333 5778888889999864
No 470
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=6.4e-07 Score=109.93 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=70.2
Q ss_pred ccCCCChHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 005142 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~------~~--P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~ 262 (712)
.+..|||||+=.++||.+|+ .+ -+++||||||..||+.+...++++|..+...+.+|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 66789999999988887765 35 699999999999999999999999999998899999999994 688899
Q ss_pred CeEEEEeC
Q 005142 263 DRLYLLSG 270 (712)
Q Consensus 263 D~v~lL~~ 270 (712)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
No 471
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=3.3e-07 Score=100.87 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 194 GISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~~---------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
.+|.||+|++.||..|+. +|+||+||||+++||...+..+++.|.+. |.+|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999754 679999999863
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.40 E-value=6.6e-07 Score=89.23 Aligned_cols=81 Identities=23% Similarity=0.234 Sum_probs=59.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CC-CcCcEEEEecCC--CCCCCCCHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-SFGTAAYVTQDD--NLIGTLTVR 146 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~~-~~~~~~yv~Q~~--~l~~~lTV~ 146 (712)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.|.+++... .. ....++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344456678899999999999999999999999998875 79999987532 11 123456665554 345667888
Q ss_pred HHHHHHhh
Q 005142 147 ETISYSAR 154 (712)
Q Consensus 147 E~l~~~~~ 154 (712)
+.+..+.+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 87776544
No 473
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.40 E-value=9.1e-08 Score=98.29 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.6
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005142 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (712)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (712)
-|+.+ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988655
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.40 E-value=2.3e-06 Score=93.51 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
.++.+|-.+|+++++||+. |..++...++ .+..|++|+.|+|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567999999999854 34666777655
No 475
>PRK14079 recF recombination protein F; Provisional
Probab=98.38 E-value=6.6e-07 Score=98.00 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 005142 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (712)
Q Consensus 194 ~LSGGerqRvsIA~aL~---------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~ 264 (712)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 47999999999999998 8999999999999999999999998886532 355554543 357999
Q ss_pred EEEEeCCeEEE
Q 005142 265 LYLLSGGKTVY 275 (712)
Q Consensus 265 v~lL~~G~iv~ 275 (712)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999988753
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.35 E-value=5.1e-07 Score=90.69 Aligned_cols=112 Identities=16% Similarity=0.255 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhh-hcCCCCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR-LRLPDKMP 162 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~ 162 (712)
+++|.||||||||||.++|++.+. .|. +.++++|+.+ ..++..+....... ...+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 579999999999999999999762 222 2334444322 22233332222111 11111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
.+...+.+..+...+..+. .....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1233455555554433332 223577777766554 5678999999999998875
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.32 E-value=1.3e-05 Score=97.25 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88899999999999888999999999974
No 478
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.31 E-value=1.4e-06 Score=105.59 Aligned_cols=138 Identities=22% Similarity=0.228 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
..|-+|+++. +.+.++.|.|||++||||+|+.++-..--. .-| .|||-+..- +++.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESAR---IGIVD- 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceE---ecccC-
Confidence 4567788887 678899999999999999999986431000 011 233322111 11111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCC---CC
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEP---TS 223 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~--~~P~llllDEP---Ts 223 (712)
.+...+|-. |. ...|.|-=+.....++..|- ++++++|+||| |+
T Consensus 652 -----------------------~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 111112211 11 12356766666666666554 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCe
Q 005142 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~ 264 (712)
.+|..+ .....++.+.+. |.++|++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888443 344556666665 5899999999 467777775
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.29 E-value=1.3e-06 Score=95.68 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=64.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceee--------
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~-------- 73 (712)
++.++++|++++++.++.... .| ....-.+.|+||++.|+ ..+.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~---------------e~~~~ri~Fe~LTf~YP----~er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DP---------------EKAKNRVLFENLTPLYP----NERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------Cc---------------cccCCCeEEEEeeecCC----CccceeecCccccce
Confidence 456789999999998777432 11 01123599999999984 3346786
Q ss_pred ---ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 74 ---~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
|+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999988654
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=1.8e-06 Score=96.33 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=110.1
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK 124 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~---~~~ 124 (712)
.+-.++.++++..+. ....+++.++ .+.+||.++|+||||||||||+++|++...++ .|.|.+.|+ +..
T Consensus 136 ~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~ 207 (450)
T PRK06002 136 APPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVR 207 (450)
T ss_pred CCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHH
Confidence 344578888888774 2366888886 89999999999999999999999999998775 788888653 211
Q ss_pred ---------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005142 125 ---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (712)
Q Consensus 125 ---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (712)
...+.+++|+|.+.-. -.+-...+.+ -.+.|.+...|- |..+ ....|
T Consensus 208 e~~~~~l~~~r~rtI~vV~qsd~~~---~~r~~~~~~a--------------~~iAEyfrd~G~----~Vll---~~Dsl 263 (450)
T PRK06002 208 EFLEDTLADNLKKAVAVVATSDESP---MMRRLAPLTA--------------TAIAEYFRDRGE----NVLL---IVDSV 263 (450)
T ss_pred HHhHHHHHHhhCCeEEEEEcCCCCH---HHHHHHHHHH--------------HHHHHHHHHcCC----CEEE---eccch
Confidence 1235789999987521 1111111111 011222222221 2111 01112
Q ss_pred Ch-HHHHH-HHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--C--C-CEEEEEeCCCchHHHh-cCCeE
Q 005142 196 SG-GERRR-VSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSR--D--G-RTVIASIHQPSSEVFE-LFDRL 265 (712)
Q Consensus 196 SG-GerqR-vsIA~aL~~~P~llllDEP--TsgLD~~~~~~i~~~L~~l~~--~--g-~tvI~~~Hqp~~~i~~-~~D~v 265 (712)
+- -|-+| +++ .++|| +.|--+.--..+-+++.+..+ . | .|.+.+..-+..++-+ .+|.+
T Consensus 264 Tr~A~A~rEisl-----------~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~ 332 (450)
T PRK06002 264 TRFAHAAREVAL-----------AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSI 332 (450)
T ss_pred HHHHHHHHHHHH-----------hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHH
Confidence 11 11122 222 22454 336666666667777777653 2 3 5777776665544423 56777
Q ss_pred EEEeCCeEEEe
Q 005142 266 YLLSGGKTVYF 276 (712)
Q Consensus 266 ~lL~~G~iv~~ 276 (712)
.-+-||+++-.
T Consensus 333 ~~i~Dg~ivLs 343 (450)
T PRK06002 333 RGTLDGHIVLD 343 (450)
T ss_pred HhhcceEEEEc
Confidence 77788998864
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=4e-06 Score=105.46 Aligned_cols=163 Identities=21% Similarity=0.308 Sum_probs=90.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005142 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA 153 (712)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 153 (712)
=+++..+++++++|+|++|+|||||++++++..... ..|.+.+++........ .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~-- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL-- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH--
Confidence 356777899999999999999999999998876543 37888887532111000 010000000 00000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005142 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (712)
Q Consensus 154 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i 233 (712)
...++.+.++++..++. + .. .++.|+| |..++-+++||+- |.. ..
T Consensus 266 ----------~l~~~~l~~il~~~~~~------~-----~~-~~~~~~~------L~~krvLLVLDdv----~~~---~~ 310 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDIK------I-----YH-LGAMEER------LKHRKVLIFIDDL----DDQ---DV 310 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCcc------c-----CC-HHHHHHH------HhCCeEEEEEeCC----CCH---HH
Confidence 00112233343333321 1 11 2566666 3356667889984 433 33
Q ss_pred HHHHHHHH---hCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEecChhhHHHHHHHcCC
Q 005142 234 TQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (712)
Q Consensus 234 ~~~L~~l~---~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 291 (712)
++.|.... ..|.+||+|||+. ..+... +|+++.+.. =+.+++.+.|...-+
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444432 3589999999995 333233 677666531 144678888876544
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.15 E-value=2.9e-06 Score=107.62 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=53.1
Q ss_pred ccCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005142 191 HLRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (712)
Q Consensus 191 ~~~~LSGGerqRvs----IA~a--------L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hq 253 (712)
...+||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35789999999996 5644 55899999999999999999999999999888 7899999987
No 483
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.10 E-value=7.9e-05 Score=78.47 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-..|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888889999999999999999999999888754
No 484
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.06 E-value=0.00015 Score=88.04 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=48.9
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCch--------HHHhcCCeEEEEeC
Q 005142 210 LMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLSG 270 (712)
Q Consensus 210 ~~~P~llllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~--------~i~~~~D~v~lL~~ 270 (712)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.. .+.+.++-.++|.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 45899999999999999 788999999999998889999999999742 23444555555544
No 485
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.06 E-value=2.5e-06 Score=84.42 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=42.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEecCCCCCCCCCHHHHHHH
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (712)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46777653211 1123555555444444455555443
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=4.8e-06 Score=67.63 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=29.4
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 72 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
.++.++.+.+ |++++|.||||||||||+++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445667775 569999999999999999999765544
No 487
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.03 E-value=2.9e-05 Score=74.98 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=83.8
Q ss_pred eEEeeccCCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005142 469 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFI--HYLFFVLCLYASVAVVESLMMAIASIVP 546 (712)
Q Consensus 469 vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~l~l~~~~~~~~sl~~~i~~~~p 546 (712)
++.|-+..-. +.+.|+++|.+...-..++..++..++.++ .|.+.+.. ..+.+++...+.......++..++...+
T Consensus 20 ~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~ 97 (152)
T TIGR01248 20 LLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKE 97 (152)
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334443333 678999999999998888888777777754 38776532 2222222223333344455555555455
Q ss_pred chhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHH
Q 005142 547 NFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY 598 (712)
Q Consensus 547 ~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~ 598 (712)
+.+... ....+..++++.||.+.|.+.+|+ |..|+.+++|++|+.+++-
T Consensus 98 ~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 98 GRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred CHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 544333 346667777888899999999996 7777999999999999874
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.02 E-value=4.6e-05 Score=70.56 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCCc
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQPS 255 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~~Hqp~ 255 (712)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 55666777777777653 4678889988643
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.02 E-value=1.3e-05 Score=89.55 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=71.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC------C--CcCcEEEE----
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK------L--SFGTAAYV---- 133 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~---~~~------~--~~~~~~yv---- 133 (712)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. . .....+.+
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4588988 999999999999999999999999999987432 2477777663 211 0 11234455
Q ss_pred -ecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005142 134 -TQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (712)
Q Consensus 134 -~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (712)
+|++ .+.+.+ +..++....+.+........+...++.+.+++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8875 234444 555554443333211123355667888899998884
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=98.00 E-value=5.8e-06 Score=90.85 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=58.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--CCcCcEEEEecCCCCCCCCCHHHHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
++.+.-.+++|++++|+|+||+|||||+|+|+|...+. +|+|.+++.... ...+.+.+++|+..++++ ....++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 45555667899999999999999999999999988764 899999875321 223568899998888765 444444
Q ss_pred HH
Q 005142 150 SY 151 (712)
Q Consensus 150 ~~ 151 (712)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
No 491
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.99 E-value=8.6e-06 Score=73.39 Aligned_cols=56 Identities=11% Similarity=0.286 Sum_probs=48.0
Q ss_pred CCCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 005142 612 PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIR 668 (712)
Q Consensus 612 ~~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~~~~~~~~~~~ 668 (712)
||...++|+++|+..|++..+| +|+|+||+++|+++|.++.++++.+....+..-.
T Consensus 26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~ 81 (103)
T PF06422_consen 26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGE 81 (103)
T ss_pred CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Confidence 4567899999999779998765 9999999999999999999999988777666533
No 492
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.94 E-value=1.9e-05 Score=75.37 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005142 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (712)
Q Consensus 169 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL-----~~~P~llllDEPTsgLD~~~~~~i~~~L~~l 240 (712)
.+.+.+...+.. -..+.+ +...++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 101 ~~~~~l~~~~~~---vi~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIP---FLVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCC---EEEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 344555555432 122333 3345789988887666553 2345555 99999999999999988764
No 493
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.94 E-value=2e-05 Score=69.23 Aligned_cols=49 Identities=39% Similarity=0.480 Sum_probs=37.5
Q ss_pred ccCCCChHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005142 191 HLRGISGGER-RRVSIALEIL------M------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (712)
Q Consensus 191 ~~~~LSGGer-qRvsIA~aL~------~------~P~llllDEPTsgLD~~~~~~i~~~L~~ 239 (712)
...++||||| ..+.++.+++ . .|++++||||+++||......+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3457999999 4455544332 2 3799999999999999999999999874
No 494
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.90 E-value=0.0014 Score=68.61 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=82.1
Q ss_pred cchHHHHHHHHHHHHHHHH---HHHHHH-hh-hhhcc-ccccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccchh
Q 005142 479 YGVTAFVIGNTLSAMPFLI---MITFIS-GT-ICYFM-VRLHPGFIHYLFFVLCLYASVA---VVESLMMAIASIVPNFL 549 (712)
Q Consensus 479 Y~~~~y~la~~l~~lP~~~---~~~~if-~~-i~Y~m-~gl~~~~~~f~~f~l~l~~~~~---~~~sl~~~i~~~~p~~~ 549 (712)
++...++++|.++.+...+ +..++- .+ ..++. .|.+.+...++...+......+ +..++++++|+++.+..
T Consensus 107 isR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~~S~~~~~~~ 186 (277)
T PF12679_consen 107 ISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAVLVFISLGLLISSLFRSSA 186 (277)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 6788999999999887632 211111 11 11222 3445555555443333222222 45899999999999888
Q ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCCCccccc--cccceecHHHHHHHHHHHHhhCCCccCCCCCCCCCccHHHHHhhh
Q 005142 550 MGIITGAGIQGIFMLVSGYFR-LPNDIPKPVWR--YPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENV 626 (712)
Q Consensus 550 ~a~~~~~~~~~~~~lfsGf~i-~~~~iP~~~W~--~~~~yiS~~~Ya~e~l~~nef~g~~f~~~~~~~~~~~G~~~L~~~ 626 (712)
.|..++..+............ ..++.....|. ..++|++|..+ ++.+..+...+.
T Consensus 187 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--------------------- 244 (277)
T PF12679_consen 187 SAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGG--------------------- 244 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccc---------------------
Confidence 887776665554433333322 11111110121 11345555432 222222111000
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 005142 627 FQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 658 (712)
Q Consensus 627 ~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~ 658 (712)
+. ....|.++++++++.+++.++++...+
T Consensus 245 -~~--~~~~~~~~~~~~~~~~v~l~la~~~F~ 273 (277)
T PF12679_consen 245 -FV--WLSTWPSLLILLAYTLVFLALAYYRFQ 273 (277)
T ss_pred -cc--hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 024788999999999999999996443
No 495
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.89 E-value=1.6e-05 Score=79.37 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch-HHHhcCCeEEEEeC
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-EVFELFDRLYLLSG 270 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~-~i~~~~D~v~lL~~ 270 (712)
.|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... .....||.++++..
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 378899999999999999988887 8899999999999998886667899999998632 35678999988764
No 496
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.88 E-value=0.0014 Score=68.15 Aligned_cols=220 Identities=14% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccC----CCChhhHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhc
Q 005142 387 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV----GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMK 462 (712)
Q Consensus 387 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~if~~l----~~~~~~i~~r~g~lff~~~~~~f~s~~~~p~~~~er~ 462 (712)
+.+.||.++.+.|.|..+..-.+..++.|+.. ..|.+. ..+.++...-.+. ...... ..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~---~~~~~~----~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSL---APWVFL----FLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHH---HHHHHH----HHHHHH--HHH
Confidence 46789999999999998877666666666432 222110 1111121111111 111111 111221 112
Q ss_pred ccCcceeEEeeccCCcc--------chHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccc--ccCCHHHHHHHHHHHHH
Q 005142 463 FCNIFQVFQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITF---ISGTICYFMVR--LHPGFIHYLFFVLCLYA 529 (712)
Q Consensus 463 f~~~~~vf~rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~l~l~~ 529 (712)
.+.+||++|.. +...++++|.++-+-+.++..+ ++....++... -..+.+.++...+.+++
T Consensus 72 ------~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 145 (240)
T TIGR03518 72 ------SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLL 145 (240)
T ss_pred ------HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 35566667763 4578899999988655443322 22222222111 11244554444444445
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccceecHHHHHHHHHHHHhhCCCccCC
Q 005142 530 SVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDN 609 (712)
Q Consensus 530 ~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~W~~~~~yiS~~~Ya~e~l~~nef~g~~f~~ 609 (712)
...+..++|.++++++.+...|..++..+..+ ++.|+-. ..++|.+.|..|+.|+||..|-.+.. . | .
T Consensus 146 ~~~~~~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~----g-~--- 213 (240)
T TIGR03518 146 LGSVYTAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R----G-V--- 213 (240)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c----C-c---
Confidence 55677799999999999988886655443222 2223211 12332112445688999976543211 1 1 0
Q ss_pred CCCCCCCccHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 005142 610 QSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 658 (712)
Q Consensus 610 ~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~L~ 658 (712)
+ .|.|+...+.+.+++..++...++
T Consensus 214 -----------------i-------~~~~~v~~~~~~~~~l~l~~~~~~ 238 (240)
T TIGR03518 214 -----------------I-------DSRDVIYFLSITVLFLALTKLQLK 238 (240)
T ss_pred -----------------c-------cHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1 145667777777877777776544
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.87 E-value=0.00035 Score=72.44 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=37.3
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCCchHHHhcC
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~-L~~l~~-~g~tvI~~~Hqp~~~i~~~~ 262 (712)
-+.+..++|+||.-.|=++.....+... ++.+.+ .+..+|++||.. ++.++.
T Consensus 119 ~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 119 NATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp H--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred hcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 3456789999999999999998887654 566776 488999999995 344443
No 498
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.84 E-value=4.2e-05 Score=89.80 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH--HHHHHh
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE--TISYSA 153 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E--~l~~~~ 153 (712)
..+.++|+||||+|||||+++|.+...+.. ...+-|.+||..... ..++ +-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC-
Confidence 345799999999999999999998764320 012335555432210 1111 11111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005142 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (712)
Q Consensus 154 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i 233 (712)
.. .+...+...+.++..|+.+..+.. +..+||| +||+|| +..||...+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 111123345567778887655553 3468888 999999 799999999998
Q ss_pred HHHHHH
Q 005142 234 TQTLRC 239 (712)
Q Consensus 234 ~~~L~~ 239 (712)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 499
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.84 E-value=0.00024 Score=70.50 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005142 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (712)
Q Consensus 169 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs--IA~aL~~-~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (712)
.+.+.++..++.- -.+++ ....+|+||++++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12232 34568999999977 4444433 33443 99999999999999999887654
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.84 E-value=0.00025 Score=72.62 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=44.1
Q ss_pred hCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc--------hHHHhcCCeEEEEe
Q 005142 211 MRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--------SEVFELFDRLYLLS 269 (712)
Q Consensus 211 ~~P~llllDEPT-----sgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~--------~~i~~~~D~v~lL~ 269 (712)
.+++++++|-.+ .+.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999422 244566677888899999888999999999631 22466889999984
Done!