Query 005142
Match_columns 712
No_of_seqs 467 out of 3254
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 9.9E-48 3.4E-52 416.0 30.4 221 50-283 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 1.1E-47 3.7E-52 394.7 28.6 220 52-282 2-232 (235)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 8.1E-48 2.8E-52 416.5 28.9 217 51-284 4-228 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 1.3E-47 4.5E-52 417.5 30.5 217 51-284 3-223 (381)
5 2olj_A Amino acid ABC transpor 100.0 3.4E-47 1.2E-51 397.0 29.7 216 51-283 24-247 (263)
6 1b0u_A Histidine permease; ABC 100.0 2.9E-47 9.8E-52 397.7 28.8 216 51-283 6-241 (262)
7 2pcj_A ABC transporter, lipopr 100.0 4.2E-47 1.4E-51 387.6 29.2 211 51-279 4-223 (224)
8 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-47 5.9E-52 401.6 27.0 218 51-284 7-233 (275)
9 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-46 3.6E-51 391.9 29.9 217 51-284 15-235 (256)
10 1g6h_A High-affinity branched- 100.0 7.4E-47 2.5E-51 393.6 26.3 217 51-281 7-239 (257)
11 1g29_1 MALK, maltose transport 100.0 2.8E-46 9.5E-51 407.7 31.5 217 51-284 3-229 (372)
12 2it1_A 362AA long hypothetical 100.0 1.6E-46 5.6E-51 407.6 29.3 217 51-284 3-223 (362)
13 2yyz_A Sugar ABC transporter, 100.0 1.4E-46 4.8E-51 407.7 28.6 217 51-284 3-223 (359)
14 1z47_A CYSA, putative ABC-tran 100.0 2.4E-46 8.1E-51 405.1 29.6 219 49-283 12-234 (355)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-46 6E-51 406.8 28.7 216 51-283 3-229 (353)
16 1ji0_A ABC transporter; ATP bi 100.0 2.2E-46 7.6E-51 386.1 27.9 215 51-283 6-227 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 2.7E-46 9.2E-51 391.0 27.4 215 50-283 10-236 (266)
18 1v43_A Sugar-binding transport 100.0 2.7E-46 9.3E-51 407.3 27.9 217 51-284 11-231 (372)
19 3nh6_A ATP-binding cassette SU 100.0 2.6E-46 9.1E-51 397.7 24.1 247 1-284 19-277 (306)
20 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-45 3.8E-50 399.4 26.5 211 52-283 2-216 (348)
21 2yz2_A Putative ABC transporte 100.0 2E-45 6.9E-50 384.6 25.8 221 51-284 2-227 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 2.5E-45 8.4E-50 378.2 25.6 210 52-283 2-215 (240)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-45 7.9E-50 380.8 25.0 216 51-280 3-229 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 4E-45 1.4E-49 384.6 22.6 219 50-282 20-250 (279)
25 2nq2_C Hypothetical ABC transp 100.0 6.5E-44 2.2E-48 370.5 29.2 210 51-282 4-215 (253)
26 2zu0_C Probable ATP-dependent 100.0 3.8E-44 1.3E-48 375.1 27.4 221 51-284 20-254 (267)
27 2ixe_A Antigen peptide transpo 100.0 2.1E-44 7.1E-49 377.8 21.8 217 51-284 16-245 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 5.6E-44 1.9E-48 369.7 24.3 214 50-283 6-231 (247)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-43 3.7E-48 367.8 25.0 205 51-282 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 5.6E-44 1.9E-48 368.9 19.3 213 52-284 2-226 (243)
31 1sgw_A Putative ABC transporte 100.0 7E-44 2.4E-48 361.0 17.2 203 49-273 8-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 5.7E-43 1.9E-47 365.1 23.5 209 52-284 2-215 (263)
33 2ghi_A Transport protein; mult 100.0 1.2E-42 4E-47 362.5 25.0 214 51-284 17-242 (260)
34 3qf4_A ABC transporter, ATP-bi 100.0 2.9E-43 9.8E-48 406.9 22.5 247 2-284 308-566 (587)
35 4a82_A Cystic fibrosis transme 100.0 4E-43 1.4E-47 405.3 23.6 247 2-284 306-564 (578)
36 2yl4_A ATP-binding cassette SU 100.0 2.3E-42 7.9E-47 400.3 28.0 250 2-283 307-569 (595)
37 3b60_A Lipid A export ATP-bind 100.0 3.3E-42 1.1E-46 398.0 28.2 246 2-284 310-567 (582)
38 3b5x_A Lipid A export ATP-bind 100.0 3.3E-42 1.1E-46 398.0 27.6 246 2-284 310-567 (582)
39 3qf4_B Uncharacterized ABC tra 100.0 1.4E-42 4.6E-47 402.2 21.1 245 2-284 322-578 (598)
40 2pze_A Cystic fibrosis transme 100.0 6E-42 2.1E-46 350.6 22.7 204 51-283 6-217 (229)
41 2cbz_A Multidrug resistance-as 100.0 6.3E-42 2.2E-46 352.2 21.2 207 51-283 3-216 (237)
42 3gd7_A Fusion complex of cysti 100.0 6.3E-42 2.1E-46 375.1 18.3 214 50-284 18-242 (390)
43 4f4c_A Multidrug resistance pr 100.0 2E-41 6.8E-46 422.6 22.2 250 2-284 1043-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 3.8E-41 1.3E-45 420.0 23.0 249 2-284 381-641 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 9.2E-40 3.1E-44 406.7 22.5 251 2-284 353-613 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 1.4E-39 4.8E-44 344.0 18.4 199 51-283 40-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 1.1E-38 3.6E-43 397.1 24.4 255 2-284 996-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.3E-35 4.5E-40 342.7 23.3 206 49-284 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.4E-35 4.7E-40 338.9 21.1 206 49-284 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 6.6E-35 2.3E-39 332.7 23.8 207 49-283 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.1E-33 3.9E-38 326.1 20.6 192 69-284 360-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 5.4E-33 1.8E-37 331.8 24.9 201 48-284 432-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 1.9E-33 6.6E-38 329.8 18.3 208 68-283 30-297 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 5.1E-34 1.7E-38 329.5 12.1 192 55-272 95-305 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 6E-34 2.1E-38 325.3 12.3 194 52-271 21-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 6E-33 2E-37 331.4 14.9 208 50-278 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.3E-32 2.8E-36 316.0 20.0 195 69-283 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 6.8E-31 2.3E-35 303.0 11.5 188 68-275 90-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.9E-30 6.5E-35 295.9 11.8 172 79-273 22-215 (538)
60 3pih_A Uvrabc system protein A 100.0 1.1E-28 3.8E-33 294.4 24.6 200 69-283 597-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 4E-29 1.4E-33 296.0 19.5 208 50-283 501-826 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 3.1E-29 1.1E-33 297.3 17.7 208 50-283 628-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 1.5E-28 5.1E-33 292.4 19.8 209 50-284 646-960 (993)
64 4aby_A DNA repair protein RECN 99.9 2.3E-27 7.9E-32 262.2 20.2 204 69-277 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.5E-30 1.2E-34 288.4 -8.4 185 73-282 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.5E-24 8.4E-29 234.8 16.6 84 190-275 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 1.3E-27 4.4E-32 240.8 -12.8 141 68-255 12-159 (208)
68 1e69_A Chromosome segregation 99.9 7.1E-24 2.4E-28 227.3 13.5 89 191-282 216-311 (322)
69 2v9p_A Replication protein E1; 99.9 1.6E-28 5.5E-33 260.4 -24.7 200 2-288 70-270 (305)
70 4gp7_A Metallophosphoesterase; 99.9 1.5E-24 5.1E-29 211.3 3.2 145 74-258 1-162 (171)
71 1tq4_A IIGP1, interferon-induc 99.9 6.6E-26 2.2E-30 249.8 -8.9 170 69-265 36-247 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 3.1E-23 1.1E-27 203.7 4.5 147 84-275 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 1.3E-25 4.4E-30 225.3 -17.7 180 68-269 8-202 (207)
74 2vf7_A UVRA2, excinuclease ABC 99.9 3.4E-21 1.2E-25 228.3 16.5 111 165-283 355-474 (842)
75 3b9q_A Chloroplast SRP recepto 99.8 1.1E-22 3.9E-27 216.0 0.9 172 72-273 90-284 (302)
76 3sop_A Neuronal-specific septi 99.8 1.7E-22 6E-27 211.3 -3.4 145 84-254 4-150 (270)
77 2o5v_A DNA replication and rep 99.8 5E-20 1.7E-24 199.8 14.8 86 189-282 259-354 (359)
78 3qkt_A DNA double-strand break 99.8 7.1E-20 2.4E-24 197.6 15.4 80 191-272 245-332 (339)
79 2dpy_A FLII, flagellum-specifi 99.8 4.6E-23 1.6E-27 229.5 -10.1 189 51-282 131-342 (438)
80 2og2_A Putative signal recogni 99.8 1.2E-21 4E-26 212.4 0.8 171 73-273 148-341 (359)
81 2pt7_A CAG-ALFA; ATPase, prote 99.8 1E-21 3.6E-26 211.2 0.0 129 71-272 160-291 (330)
82 1z6g_A Guanylate kinase; struc 99.8 5.9E-24 2E-28 215.4 -19.7 153 69-242 10-175 (218)
83 3pih_A Uvrabc system protein A 99.8 1E-19 3.5E-24 217.4 12.4 163 98-284 384-560 (916)
84 4ad8_A DNA repair protein RECN 99.8 3.2E-19 1.1E-23 203.1 13.2 78 191-271 393-473 (517)
85 1cr0_A DNA primase/helicase; R 99.8 2E-20 6.8E-25 197.5 1.2 183 69-273 22-237 (296)
86 1tf7_A KAIC; homohexamer, hexa 99.8 2.6E-19 8.8E-24 204.2 9.8 156 76-272 275-444 (525)
87 3aez_A Pantothenate kinase; tr 99.8 1.8E-21 6.1E-26 207.7 -7.7 123 79-227 87-209 (312)
88 2jeo_A Uridine-cytidine kinase 99.8 1.6E-20 5.4E-25 193.2 -1.5 179 67-286 10-189 (245)
89 2o8b_B DNA mismatch repair pro 99.8 8.1E-20 2.8E-24 221.5 2.3 172 51-280 750-938 (1022)
90 2r6f_A Excinuclease ABC subuni 99.8 4.4E-18 1.5E-22 202.2 16.4 135 141-283 450-599 (972)
91 3thx_A DNA mismatch repair pro 99.8 1.2E-18 4.2E-23 208.9 11.1 169 51-282 631-811 (934)
92 2ygr_A Uvrabc system protein A 99.7 6.7E-18 2.3E-22 201.3 14.2 137 140-284 466-617 (993)
93 2obl_A ESCN; ATPase, hydrolase 99.7 1E-19 3.4E-24 196.8 -1.7 190 51-282 45-253 (347)
94 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 7.6E-18 2.6E-22 160.3 10.3 83 189-273 52-142 (148)
95 2ehv_A Hypothetical protein PH 99.7 2.1E-19 7.3E-24 183.5 -0.9 166 72-269 19-206 (251)
96 1tf7_A KAIC; homohexamer, hexa 99.7 2E-19 6.9E-24 205.1 -1.4 168 68-272 24-211 (525)
97 4a74_A DNA repair and recombin 99.7 6.1E-19 2.1E-23 177.8 0.6 154 77-272 20-201 (231)
98 2eyu_A Twitching motility prot 99.7 1.5E-18 5.1E-23 180.6 3.3 133 70-270 15-147 (261)
99 3asz_A Uridine kinase; cytidin 99.7 5.8E-20 2E-24 183.8 -11.6 145 79-254 3-161 (211)
100 3thx_B DNA mismatch repair pro 99.7 3.1E-17 1.1E-21 196.3 9.4 155 68-275 659-816 (918)
101 2qnr_A Septin-2, protein NEDD5 99.7 7.6E-19 2.6E-23 186.5 -4.7 162 55-255 2-168 (301)
102 1ewq_A DNA mismatch repair pro 99.7 8.6E-18 2.9E-22 198.2 3.3 145 68-276 565-716 (765)
103 1rj9_A FTSY, signal recognitio 99.7 9.2E-18 3.2E-22 178.3 0.8 146 81-254 101-258 (304)
104 1pzn_A RAD51, DNA repair and r 99.7 3.6E-18 1.2E-22 185.0 -2.7 166 71-278 119-309 (349)
105 1wb9_A DNA mismatch repair pro 99.7 1.8E-17 6.2E-22 196.5 2.7 157 68-278 594-752 (800)
106 2w0m_A SSO2452; RECA, SSPF, un 99.6 5E-17 1.7E-21 163.5 2.9 171 69-271 9-192 (235)
107 3szr_A Interferon-induced GTP- 99.6 1.9E-18 6.4E-23 200.2 -9.9 192 51-285 10-238 (608)
108 1nlf_A Regulatory protein REPA 99.6 9.9E-16 3.4E-20 160.3 11.3 150 78-254 26-181 (279)
109 2i3b_A HCR-ntpase, human cance 99.6 2.3E-18 8E-23 170.6 -9.4 154 82-276 1-168 (189)
110 3jvv_A Twitching mobility prot 99.6 2.5E-16 8.4E-21 170.8 3.6 127 78-271 119-246 (356)
111 2qag_C Septin-7; cell cycle, c 99.6 5.5E-17 1.9E-21 179.2 -4.5 162 51-253 11-176 (418)
112 1pui_A ENGB, probable GTP-bind 99.5 2.9E-15 1E-19 148.6 5.7 175 52-246 4-202 (210)
113 3kta_B Chromosome segregation 99.5 4.6E-14 1.6E-18 137.6 11.2 79 191-272 61-145 (173)
114 1s96_A Guanylate kinase, GMP k 99.5 7.2E-16 2.5E-20 156.2 -2.2 149 76-287 10-163 (219)
115 2cvh_A DNA repair and recombin 99.5 2.5E-13 8.6E-18 135.6 15.5 154 70-271 7-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.5 1.1E-17 3.9E-22 164.3 -16.1 169 82-282 2-182 (189)
117 1zp6_A Hypothetical protein AT 99.4 3.7E-16 1.3E-20 153.3 -9.3 152 78-252 5-159 (191)
118 2qag_B Septin-6, protein NEDD5 99.4 2E-15 6.9E-20 166.4 -5.1 173 69-253 28-218 (427)
119 2ewv_A Twitching motility prot 99.4 2.5E-14 8.5E-19 156.1 2.3 130 71-269 127-257 (372)
120 2gza_A Type IV secretion syste 99.4 2.3E-14 7.8E-19 155.8 1.7 135 72-272 165-303 (361)
121 1lw7_A Transcriptional regulat 99.4 1.1E-16 3.6E-21 174.4 -16.8 166 71-268 157-341 (365)
122 2rcn_A Probable GTPase ENGC; Y 99.4 1.4E-13 4.7E-18 148.8 5.6 121 71-209 205-328 (358)
123 1htw_A HI0065; nucleotide-bind 99.4 1.3E-15 4.5E-20 146.5 -9.2 79 68-151 19-97 (158)
124 1nij_A Hypothetical protein YJ 99.4 7.6E-17 2.6E-21 172.4 -20.3 159 83-263 5-197 (318)
125 1n0w_A DNA repair protein RAD5 99.4 2.8E-13 9.5E-18 137.4 6.9 153 77-271 19-209 (243)
126 2f1r_A Molybdopterin-guanine d 99.4 3.1E-15 1.1E-19 145.7 -7.5 137 83-244 3-163 (171)
127 3auy_A DNA double-strand break 99.4 1.4E-12 4.7E-17 142.2 12.5 76 191-269 277-359 (371)
128 2bbw_A Adenylate kinase 4, AK4 99.4 1.4E-15 4.9E-20 156.1 -10.7 151 81-243 26-199 (246)
129 1odf_A YGR205W, hypothetical 3 99.3 6.2E-14 2.1E-18 147.9 -2.1 132 80-229 29-169 (290)
130 2yhs_A FTSY, cell division pro 99.3 8.5E-14 2.9E-18 155.4 -1.3 152 72-253 283-448 (503)
131 3ec2_A DNA replication protein 99.3 2.4E-13 8.1E-18 132.4 1.4 49 209-257 97-146 (180)
132 2kjq_A DNAA-related protein; s 99.3 1.2E-12 3.9E-17 124.5 5.7 98 70-256 29-127 (149)
133 1udx_A The GTP-binding protein 99.3 7.4E-14 2.5E-18 154.1 -3.0 170 72-265 147-319 (416)
134 3e70_C DPA, signal recognition 99.3 2.3E-13 7.8E-18 145.9 0.7 141 80-254 127-279 (328)
135 2qm8_A GTPase/ATPase; G protei 99.3 1.3E-14 4.4E-19 156.4 -10.5 172 52-242 30-260 (337)
136 1w1w_A Structural maintenance 99.3 6.9E-12 2.4E-16 139.3 10.7 75 193-269 332-410 (430)
137 2yv5_A YJEQ protein; hydrolase 99.3 2.8E-13 9.6E-18 143.7 -1.9 120 79-208 162-301 (302)
138 1p9r_A General secretion pathw 99.2 7.9E-15 2.7E-19 162.1 -18.1 134 70-218 157-315 (418)
139 1sxj_E Activator 1 40 kDa subu 99.2 1.3E-11 4.3E-16 132.7 6.9 134 85-256 39-176 (354)
140 2oap_1 GSPE-2, type II secreti 99.2 4.3E-14 1.5E-18 160.1 -13.3 175 69-262 247-457 (511)
141 3c8u_A Fructokinase; YP_612366 99.2 9.9E-14 3.4E-18 138.7 -9.2 164 79-286 19-183 (208)
142 3lda_A DNA repair protein RAD5 99.2 7.8E-11 2.7E-15 129.4 11.5 155 76-272 172-364 (400)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.8E-13 1.3E-17 147.2 -12.1 170 78-281 16-210 (392)
144 1u0l_A Probable GTPase ENGC; p 99.1 7.3E-12 2.5E-16 132.7 -2.1 105 78-197 165-294 (301)
145 1in4_A RUVB, holliday junction 99.0 1.8E-12 6.1E-17 139.2 -10.0 151 68-242 30-194 (334)
146 1t9h_A YLOQ, probable GTPase E 99.0 4.2E-11 1.4E-15 127.0 -0.1 116 78-202 169-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.0 1.4E-13 4.7E-18 136.9 -19.5 57 205-270 116-173 (198)
148 2dr3_A UPF0273 protein PH0284; 99.0 2.1E-09 7.1E-14 108.8 10.9 67 204-270 118-196 (247)
149 2x8a_A Nuclear valosin-contain 98.9 4.6E-13 1.6E-17 140.1 -17.9 126 69-223 33-164 (274)
150 1vma_A Cell division protein F 98.9 6.8E-10 2.3E-14 117.8 4.3 113 75-241 97-212 (306)
151 2r6a_A DNAB helicase, replicat 98.9 3E-09 1E-13 118.9 8.9 174 69-273 190-401 (454)
152 1ls1_A Signal recognition part 98.8 7.2E-09 2.5E-13 109.3 8.9 118 73-240 91-209 (295)
153 2ius_A DNA translocase FTSK; n 98.8 2E-10 6.8E-15 129.4 -4.0 165 74-255 159-343 (512)
154 2px0_A Flagellar biosynthesis 98.8 6.9E-09 2.4E-13 109.5 7.7 141 80-276 103-247 (296)
155 3euj_A Chromosome partition pr 98.8 2.1E-09 7.1E-14 120.4 3.7 51 69-123 17-67 (483)
156 3k1j_A LON protease, ATP-depen 98.8 1.4E-10 4.8E-15 134.3 -6.2 161 67-239 45-227 (604)
157 1sq5_A Pantothenate kinase; P- 98.8 3.2E-10 1.1E-14 120.4 -3.4 94 52-156 38-156 (308)
158 2zr9_A Protein RECA, recombina 98.7 7.5E-09 2.6E-13 111.8 6.9 148 77-278 56-237 (349)
159 1iy2_A ATP-dependent metallopr 98.7 1.1E-11 3.9E-16 129.2 -17.7 122 69-215 62-190 (278)
160 1oix_A RAS-related protein RAB 98.7 4E-09 1.4E-13 103.3 1.5 38 201-240 152-189 (191)
161 1ixz_A ATP-dependent metallopr 98.6 1.6E-11 5.6E-16 126.0 -17.4 122 69-215 38-166 (254)
162 3tr0_A Guanylate kinase, GMP k 98.6 1.6E-09 5.5E-14 106.8 -2.4 67 76-149 1-72 (205)
163 2qtf_A Protein HFLX, GTP-bindi 98.5 8.2E-08 2.8E-12 104.2 6.5 149 84-242 181-353 (364)
164 1qhl_A Protein (cell division 98.5 5.5E-09 1.9E-13 106.1 -3.6 72 49-136 7-91 (227)
165 2ce7_A Cell division protein F 98.4 2.7E-07 9.3E-12 103.4 7.9 59 197-255 93-165 (476)
166 3lnc_A Guanylate kinase, GMP k 98.4 5.4E-08 1.9E-12 98.3 1.7 40 69-108 14-54 (231)
167 2f9l_A RAB11B, member RAS onco 98.4 1.4E-07 4.7E-12 92.6 3.3 37 203-241 130-166 (199)
168 3hr8_A Protein RECA; alpha and 98.3 1.1E-07 3.7E-12 102.8 2.2 37 71-107 48-86 (356)
169 2xau_A PRE-mRNA-splicing facto 98.3 7.3E-07 2.5E-11 105.9 7.8 74 192-266 188-263 (773)
170 4eun_A Thermoresistant glucoki 98.3 2.2E-08 7.6E-13 98.9 -4.7 45 72-123 19-63 (200)
171 4a1f_A DNAB helicase, replicat 98.2 6.1E-07 2.1E-11 96.2 4.5 129 69-251 33-163 (338)
172 3nwj_A ATSK2; P loop, shikimat 98.2 1.4E-07 4.6E-12 97.2 -1.7 53 51-107 17-73 (250)
173 2e87_A Hypothetical protein PH 98.1 3.5E-06 1.2E-10 90.9 8.1 60 193-254 230-292 (357)
174 3uie_A Adenylyl-sulfate kinase 98.0 2.1E-07 7.2E-12 91.8 -3.5 51 69-123 12-64 (200)
175 3kta_A Chromosome segregation 98.0 3.2E-06 1.1E-10 81.6 4.9 38 70-108 13-52 (182)
176 1zu4_A FTSY; GTPase, signal re 98.0 9.1E-07 3.1E-11 94.3 0.5 49 72-123 95-143 (320)
177 3a00_A Guanylate kinase, GMP k 98.0 1.3E-06 4.6E-11 85.1 1.5 27 82-108 1-27 (186)
178 2dhr_A FTSH; AAA+ protein, hex 98.0 3.4E-08 1.2E-12 111.3 -11.7 127 69-222 53-186 (499)
179 3vaa_A Shikimate kinase, SK; s 98.0 2.9E-06 1E-10 83.5 3.5 40 67-106 10-49 (199)
180 1fnn_A CDC6P, cell division co 98.0 2.1E-05 7.1E-10 84.6 10.5 43 211-254 124-169 (389)
181 3t34_A Dynamin-related protein 98.0 2.6E-05 8.8E-10 84.1 10.8 57 195-252 155-212 (360)
182 2j41_A Guanylate kinase; GMP, 97.9 4.8E-06 1.7E-10 81.7 4.4 32 77-108 1-32 (207)
183 1v5w_A DMC1, meiotic recombina 97.9 5E-05 1.7E-09 81.5 12.3 138 77-253 117-273 (343)
184 1kgd_A CASK, peripheral plasma 97.9 4E-06 1.4E-10 81.3 2.9 37 80-118 3-39 (180)
185 2z4s_A Chromosomal replication 97.9 3.9E-06 1.3E-10 93.3 3.1 70 211-280 193-264 (440)
186 3b9p_A CG5977-PA, isoform A; A 97.9 7E-05 2.4E-09 77.9 12.5 73 196-268 97-186 (297)
187 1jjv_A Dephospho-COA kinase; P 97.8 6.8E-06 2.3E-10 81.0 3.7 70 196-269 61-131 (206)
188 3bh0_A DNAB-like replicative h 97.8 1.9E-05 6.4E-10 83.8 6.5 132 69-252 55-189 (315)
189 2z43_A DNA repair and recombin 97.8 8.5E-05 2.9E-09 79.0 11.2 138 77-253 102-257 (324)
190 2vp4_A Deoxynucleoside kinase; 97.8 6.3E-06 2.1E-10 83.2 1.8 38 78-122 16-53 (230)
191 3tau_A Guanylate kinase, GMP k 97.7 1.7E-05 5.8E-10 78.7 4.0 29 80-108 6-34 (208)
192 1ega_A Protein (GTP-binding pr 97.7 2.4E-05 8.2E-10 82.4 5.3 64 195-266 101-170 (301)
193 4e22_A Cytidylate kinase; P-lo 97.7 4.6E-06 1.6E-10 85.6 -0.7 60 71-136 19-95 (252)
194 2qt1_A Nicotinamide riboside k 97.6 2.9E-05 9.8E-10 76.6 3.9 29 78-106 17-45 (207)
195 2dy1_A Elongation factor G; tr 97.6 1.4E-05 4.7E-10 93.4 1.8 44 76-121 3-46 (665)
196 3ney_A 55 kDa erythrocyte memb 97.6 1.7E-05 5.9E-10 78.5 2.2 29 79-107 16-44 (197)
197 1svm_A Large T antigen; AAA+ f 97.6 9E-06 3.1E-10 88.4 0.0 44 69-118 156-199 (377)
198 1rz3_A Hypothetical protein rb 97.6 1.1E-05 3.7E-10 79.6 0.4 40 79-121 19-58 (201)
199 1knq_A Gluconate kinase; ALFA/ 97.5 2.3E-05 7.9E-10 75.0 2.1 35 80-121 6-40 (175)
200 3kl4_A SRP54, signal recogniti 97.5 0.00015 5.2E-09 80.1 8.7 28 81-108 96-123 (433)
201 3cf0_A Transitional endoplasmi 97.5 0.00013 4.4E-09 76.6 7.5 29 78-106 45-73 (301)
202 3tqc_A Pantothenate kinase; bi 97.5 1E-05 3.5E-10 86.1 -1.4 41 68-108 72-118 (321)
203 3cr8_A Sulfate adenylyltranfer 97.5 2.4E-05 8.2E-10 89.2 1.0 42 78-122 365-408 (552)
204 3llm_A ATP-dependent RNA helic 97.4 3.5E-05 1.2E-09 77.8 2.0 66 196-263 162-228 (235)
205 1kag_A SKI, shikimate kinase I 97.4 4.6E-05 1.6E-09 72.5 2.7 27 81-107 3-29 (173)
206 2qby_A CDC6 homolog 1, cell di 97.4 2.3E-05 7.8E-10 83.9 0.5 28 80-107 43-70 (386)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 8.4E-05 2.9E-09 70.0 3.9 31 73-104 15-45 (149)
208 1lv7_A FTSH; alpha/beta domain 97.4 0.00071 2.4E-08 68.8 11.1 35 71-107 36-70 (257)
209 2q6t_A DNAB replication FORK h 97.4 0.00089 3E-08 74.2 12.5 171 69-269 187-396 (444)
210 2w58_A DNAI, primosome compone 97.3 0.00033 1.1E-08 68.5 6.5 25 83-107 55-79 (202)
211 1w1w_A Structural maintenance 97.3 0.00011 3.8E-09 81.1 3.4 33 77-109 21-53 (430)
212 1ypw_A Transitional endoplasmi 97.2 0.00024 8.3E-09 84.7 5.5 31 77-107 233-263 (806)
213 1l8q_A Chromosomal replication 97.1 0.00099 3.4E-08 70.2 9.2 47 210-256 96-143 (324)
214 2p67_A LAO/AO transport system 97.1 3.4E-05 1.2E-09 82.7 -2.4 50 68-120 42-91 (341)
215 2pez_A Bifunctional 3'-phospho 97.1 0.00012 4E-09 70.4 1.3 28 80-107 3-30 (179)
216 3lxx_A GTPase IMAP family memb 97.1 0.0056 1.9E-07 61.4 13.8 43 211-253 111-155 (239)
217 3h4m_A Proteasome-activating n 97.1 0.00099 3.4E-08 68.6 8.1 28 79-106 48-75 (285)
218 4eaq_A DTMP kinase, thymidylat 97.1 0.0002 6.7E-09 72.4 2.6 37 72-108 13-52 (229)
219 3ice_A Transcription terminati 97.0 6.8E-05 2.3E-09 81.1 -1.6 52 51-106 133-198 (422)
220 3qks_A DNA double-strand break 97.0 0.00039 1.3E-08 68.8 3.9 32 73-105 15-46 (203)
221 1u94_A RECA protein, recombina 97.0 0.0068 2.3E-07 65.2 13.9 35 71-105 50-86 (356)
222 2www_A Methylmalonic aciduria 97.0 0.00017 5.9E-09 77.5 1.2 39 80-121 72-110 (349)
223 2b8t_A Thymidine kinase; deoxy 97.0 0.0013 4.4E-08 66.2 7.5 53 212-269 89-150 (223)
224 2gj8_A MNME, tRNA modification 96.9 0.00093 3.2E-08 63.6 6.1 27 80-106 2-28 (172)
225 3m6a_A ATP-dependent protease 96.9 0.00015 5.2E-09 82.6 -0.0 48 69-120 96-143 (543)
226 3d8b_A Fidgetin-like protein 1 96.9 0.005 1.7E-07 66.1 11.6 27 80-106 115-141 (357)
227 1cke_A CK, MSSA, protein (cyti 96.8 0.0005 1.7E-08 68.3 3.4 37 82-118 5-41 (227)
228 2i1q_A DNA repair and recombin 96.8 0.0042 1.4E-07 65.5 10.7 34 71-104 86-120 (322)
229 2qor_A Guanylate kinase; phosp 96.8 0.0004 1.4E-08 68.3 2.6 29 79-107 9-37 (204)
230 3bos_A Putative DNA replicatio 96.8 0.001 3.4E-08 66.0 5.5 45 211-255 103-149 (242)
231 1mky_A Probable GTP-binding pr 96.8 0.001 3.5E-08 73.6 6.1 39 84-122 182-229 (439)
232 1m7g_A Adenylylsulfate kinase; 96.8 0.00026 9E-09 70.0 1.1 40 79-121 22-63 (211)
233 3bgw_A DNAB-like replicative h 96.8 0.0013 4.6E-08 72.9 6.9 35 70-104 185-219 (444)
234 1m2o_B GTP-binding protein SAR 96.7 0.001 3.5E-08 64.3 4.6 35 70-105 12-46 (190)
235 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.014 4.9E-07 61.6 13.8 28 79-106 42-69 (322)
236 1np6_A Molybdopterin-guanine d 96.7 0.00068 2.3E-08 65.6 3.1 39 83-121 7-45 (174)
237 1y63_A LMAJ004144AAA protein; 96.7 0.00067 2.3E-08 65.6 3.0 32 74-105 2-33 (184)
238 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0073 2.5E-07 61.0 10.5 27 80-106 37-63 (262)
239 3auy_A DNA double-strand break 96.6 0.0014 4.9E-08 70.8 5.2 31 72-103 16-46 (371)
240 1f6b_A SAR1; gtpases, N-termin 96.6 0.00043 1.5E-08 67.5 0.6 37 68-105 12-48 (198)
241 2yvu_A Probable adenylyl-sulfa 96.5 0.00079 2.7E-08 64.9 1.8 29 80-108 11-39 (186)
242 2v1u_A Cell division control p 96.5 0.0018 6E-08 69.2 4.7 27 80-106 42-68 (387)
243 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.9E-08 64.7 2.9 21 84-104 3-23 (204)
244 2ffh_A Protein (FFH); SRP54, s 96.4 0.00064 2.2E-08 74.9 1.1 45 73-122 91-135 (425)
245 2zts_A Putative uncharacterize 96.4 0.0052 1.8E-07 61.4 7.4 60 210-269 133-206 (251)
246 1q57_A DNA primase/helicase; d 96.4 0.031 1E-06 62.7 14.5 35 70-104 230-264 (503)
247 2r8r_A Sensor protein; KDPD, P 96.3 0.0029 1E-07 63.6 5.1 73 209-288 81-175 (228)
248 2qag_A Septin-2, protein NEDD5 96.3 0.00033 1.1E-08 75.7 -2.0 46 51-107 17-62 (361)
249 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0016 5.6E-08 70.9 3.0 46 76-121 16-69 (396)
250 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00048 1.6E-08 73.9 -1.2 38 70-107 10-49 (359)
251 2p5t_B PEZT; postsegregational 96.2 0.00098 3.3E-08 68.0 1.0 46 71-122 22-67 (253)
252 2wji_A Ferrous iron transport 96.2 0.0022 7.6E-08 60.2 3.4 23 84-106 5-27 (165)
253 3t61_A Gluconokinase; PSI-biol 96.2 0.0018 6.1E-08 63.3 2.9 25 82-106 18-42 (202)
254 1qhx_A CPT, protein (chloramph 96.2 0.002 7E-08 61.2 3.2 26 82-107 3-28 (178)
255 3cm0_A Adenylate kinase; ATP-b 96.2 0.0023 7.9E-08 61.3 3.4 27 80-106 2-28 (186)
256 3kb2_A SPBC2 prophage-derived 96.1 0.0026 9E-08 59.8 3.3 23 84-106 3-25 (173)
257 1sxj_C Activator 1 40 kDa subu 96.1 0.00061 2.1E-08 72.5 -1.3 41 68-108 30-72 (340)
258 1j8m_F SRP54, signal recogniti 96.1 0.00053 1.8E-08 72.0 -1.9 45 73-121 89-134 (297)
259 2zej_A Dardarin, leucine-rich 96.0 0.0031 1.1E-07 60.3 3.1 23 84-106 4-26 (184)
260 1kht_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 59.6 3.6 25 82-106 3-27 (192)
261 1q3t_A Cytidylate kinase; nucl 95.9 0.0037 1.3E-07 62.8 3.5 29 78-106 12-40 (236)
262 2wjg_A FEOB, ferrous iron tran 95.9 0.0036 1.2E-07 59.6 3.2 22 84-105 9-30 (188)
263 3r20_A Cytidylate kinase; stru 95.9 0.0038 1.3E-07 63.2 3.4 24 83-106 10-33 (233)
264 1xx6_A Thymidine kinase; NESG, 95.9 0.0058 2E-07 59.9 4.6 53 212-269 81-142 (191)
265 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.017 5.9E-07 61.1 8.1 28 77-104 118-145 (331)
266 2ze6_A Isopentenyl transferase 95.8 0.0044 1.5E-07 63.3 3.4 24 83-106 2-25 (253)
267 1xp8_A RECA protein, recombina 95.8 0.042 1.4E-06 59.2 11.1 28 77-104 69-96 (366)
268 2rhm_A Putative kinase; P-loop 95.8 0.0047 1.6E-07 59.3 3.3 27 80-106 3-29 (193)
269 3io5_A Recombination and repai 95.7 0.025 8.6E-07 59.7 8.9 27 77-104 24-51 (333)
270 2qp9_X Vacuolar protein sortin 95.7 0.036 1.2E-06 59.4 10.3 27 80-106 82-108 (355)
271 2j9r_A Thymidine kinase; TK1, 95.7 0.021 7E-07 56.9 7.8 53 212-269 101-162 (214)
272 1ex7_A Guanylate kinase; subst 95.7 0.0049 1.7E-07 60.2 3.2 23 84-106 3-25 (186)
273 2v54_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 59.2 3.8 26 81-106 3-28 (204)
274 3cmw_A Protein RECA, recombina 95.7 0.064 2.2E-06 68.1 13.7 29 78-106 728-756 (1706)
275 3lw7_A Adenylate kinase relate 95.7 0.0055 1.9E-07 57.3 3.3 19 84-102 3-21 (179)
276 3trf_A Shikimate kinase, SK; a 95.7 0.0059 2E-07 58.4 3.5 26 81-106 4-29 (185)
277 1vht_A Dephospho-COA kinase; s 95.6 0.0064 2.2E-07 60.0 3.6 24 81-104 3-26 (218)
278 2plr_A DTMP kinase, probable t 95.6 0.0071 2.4E-07 58.8 3.8 27 81-107 3-29 (213)
279 2orv_A Thymidine kinase; TP4A 95.5 0.057 1.9E-06 54.4 10.3 54 210-269 88-150 (234)
280 3iij_A Coilin-interacting nucl 95.5 0.0061 2.1E-07 58.2 3.1 26 81-106 10-35 (180)
281 2jaq_A Deoxyguanosine kinase; 95.5 0.0068 2.3E-07 58.6 3.4 23 84-106 2-24 (205)
282 1ly1_A Polynucleotide kinase; 95.4 0.0079 2.7E-07 56.9 3.6 22 83-104 3-24 (181)
283 1xjc_A MOBB protein homolog; s 95.4 0.0062 2.1E-07 58.5 2.6 25 83-107 5-29 (169)
284 2wwf_A Thymidilate kinase, put 95.4 0.0078 2.7E-07 58.7 3.3 27 80-106 8-34 (212)
285 1gvn_B Zeta; postsegregational 95.4 0.0072 2.5E-07 62.9 3.2 36 80-120 31-66 (287)
286 3vfd_A Spastin; ATPase, microt 95.3 0.11 3.8E-06 56.0 12.8 27 80-106 146-172 (389)
287 1gtv_A TMK, thymidylate kinase 95.3 0.0039 1.3E-07 61.0 1.0 24 84-107 2-25 (214)
288 2c95_A Adenylate kinase 1; tra 95.3 0.0079 2.7E-07 57.8 3.1 27 80-106 7-33 (196)
289 1uf9_A TT1252 protein; P-loop, 95.3 0.0086 2.9E-07 57.9 3.4 23 83-105 9-31 (203)
290 1via_A Shikimate kinase; struc 95.3 0.0084 2.9E-07 57.0 3.2 23 84-106 6-28 (175)
291 1nn5_A Similar to deoxythymidy 95.2 0.009 3.1E-07 58.3 3.3 27 80-106 7-33 (215)
292 4b4t_J 26S protease regulatory 95.2 0.09 3.1E-06 57.3 11.4 27 80-106 180-206 (405)
293 4dcu_A GTP-binding protein ENG 95.2 0.027 9.2E-07 62.4 7.3 52 198-253 88-140 (456)
294 4b4t_L 26S protease subunit RP 95.2 0.094 3.2E-06 57.8 11.5 28 79-106 212-239 (437)
295 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.8E-07 56.5 3.7 24 82-105 3-26 (196)
296 1ko7_A HPR kinase/phosphatase; 95.2 0.015 5.2E-07 61.3 4.9 36 69-105 132-167 (314)
297 1nks_A Adenylate kinase; therm 95.1 0.0094 3.2E-07 56.9 3.1 24 84-107 3-26 (194)
298 3k53_A Ferrous iron transport 95.1 0.0088 3E-07 61.4 2.8 23 84-106 5-27 (271)
299 4b4t_K 26S protease regulatory 95.1 0.091 3.1E-06 57.8 11.0 28 79-106 203-230 (428)
300 3ake_A Cytidylate kinase; CMP 95.0 0.0091 3.1E-07 58.0 2.4 23 84-106 4-26 (208)
301 2ged_A SR-beta, signal recogni 95.0 0.011 3.8E-07 56.4 3.0 24 83-106 49-72 (193)
302 2bwj_A Adenylate kinase 5; pho 95.0 0.0098 3.3E-07 57.3 2.6 27 80-106 10-36 (199)
303 1z2a_A RAS-related protein RAB 94.9 0.012 4E-07 54.5 3.0 23 84-106 7-29 (168)
304 3hu3_A Transitional endoplasmi 94.9 0.034 1.2E-06 62.4 7.1 28 79-106 235-262 (489)
305 1aky_A Adenylate kinase; ATP:A 94.9 0.014 4.9E-07 57.6 3.7 27 80-106 2-28 (220)
306 2nzj_A GTP-binding protein REM 94.9 0.013 4.5E-07 54.6 3.2 23 84-106 6-28 (175)
307 3ihw_A Centg3; RAS, centaurin, 94.9 0.027 9.1E-07 53.9 5.4 22 84-105 22-43 (184)
308 2erx_A GTP-binding protein DI- 94.9 0.014 4.7E-07 54.1 3.2 22 84-105 5-26 (172)
309 1kao_A RAP2A; GTP-binding prot 94.8 0.014 4.6E-07 53.8 3.0 23 84-106 5-27 (167)
310 2dyk_A GTP-binding protein; GT 94.8 0.014 4.7E-07 53.7 3.0 23 84-106 3-25 (161)
311 3q72_A GTP-binding protein RAD 94.8 0.011 3.8E-07 54.7 2.4 23 84-106 4-26 (166)
312 2z0h_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 55.9 3.4 23 84-106 2-24 (197)
313 1u8z_A RAS-related protein RAL 94.8 0.014 4.7E-07 53.8 3.0 23 84-106 6-28 (168)
314 3q85_A GTP-binding protein REM 94.7 0.015 5.2E-07 53.9 3.2 22 85-106 5-26 (169)
315 2vli_A Antibiotic resistance p 94.7 0.011 3.9E-07 56.1 2.3 26 81-106 4-29 (183)
316 2ce2_X GTPase HRAS; signaling 94.7 0.013 4.4E-07 53.8 2.6 23 84-106 5-27 (166)
317 1jal_A YCHF protein; nucleotid 94.7 0.022 7.6E-07 61.3 4.8 39 82-120 2-48 (363)
318 1z0j_A RAB-22, RAS-related pro 94.7 0.015 5.1E-07 53.8 3.0 23 84-106 8-30 (170)
319 1z08_A RAS-related protein RAB 94.7 0.015 5.2E-07 53.9 3.0 23 84-106 8-30 (170)
320 3tw8_B RAS-related protein RAB 94.7 0.014 4.9E-07 54.6 2.9 23 84-106 11-33 (181)
321 1ek0_A Protein (GTP-binding pr 94.7 0.015 5.2E-07 53.7 3.0 23 84-106 5-27 (170)
322 3cmw_A Protein RECA, recombina 94.7 0.19 6.4E-06 64.0 13.6 153 70-276 369-557 (1706)
323 1zd8_A GTP:AMP phosphotransfer 94.6 0.016 5.4E-07 57.6 3.2 27 80-106 5-31 (227)
324 2cdn_A Adenylate kinase; phosp 94.6 0.019 6.5E-07 55.8 3.7 25 82-106 20-44 (201)
325 3b1v_A Ferrous iron uptake tra 94.6 0.022 7.4E-07 58.9 4.3 23 84-106 5-27 (272)
326 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.016 5.4E-07 54.2 3.0 23 84-106 9-31 (177)
327 1c1y_A RAS-related protein RAP 94.6 0.016 5.4E-07 53.5 3.0 23 84-106 5-27 (167)
328 1ky3_A GTP-binding protein YPT 94.6 0.016 5.5E-07 54.3 3.0 23 84-106 10-32 (182)
329 1g16_A RAS-related protein SEC 94.6 0.014 4.9E-07 54.0 2.6 23 84-106 5-27 (170)
330 2lkc_A Translation initiation 94.6 0.021 7.2E-07 53.5 3.7 25 82-106 8-32 (178)
331 3lxw_A GTPase IMAP family memb 94.5 0.017 5.8E-07 58.5 3.2 24 84-107 23-46 (247)
332 4ag6_A VIRB4 ATPase, type IV s 94.5 0.011 3.9E-07 63.9 2.0 45 212-256 262-309 (392)
333 3fb4_A Adenylate kinase; psych 94.5 0.018 6.3E-07 56.4 3.4 23 84-106 2-24 (216)
334 1svi_A GTP-binding protein YSX 94.5 0.015 5.2E-07 55.5 2.6 23 84-106 25-47 (195)
335 1fzq_A ADP-ribosylation factor 94.5 0.015 5E-07 55.5 2.4 22 84-105 18-39 (181)
336 2pbr_A DTMP kinase, thymidylat 94.5 0.02 6.7E-07 54.8 3.4 23 84-106 2-24 (195)
337 2fn4_A P23, RAS-related protei 94.4 0.016 5.5E-07 54.2 2.6 23 84-106 11-33 (181)
338 1ukz_A Uridylate kinase; trans 94.4 0.021 7.1E-07 55.4 3.5 25 82-106 15-39 (203)
339 1e6c_A Shikimate kinase; phosp 94.4 0.018 6.1E-07 54.2 2.9 24 83-106 3-26 (173)
340 1zak_A Adenylate kinase; ATP:A 94.4 0.016 5.6E-07 57.3 2.7 26 81-106 4-29 (222)
341 1r2q_A RAS-related protein RAB 94.4 0.019 6.4E-07 53.1 3.0 23 84-106 8-30 (170)
342 3pqc_A Probable GTP-binding pr 94.4 0.016 5.6E-07 55.0 2.6 23 84-106 25-47 (195)
343 3dm5_A SRP54, signal recogniti 94.4 0.32 1.1E-05 53.7 13.2 27 81-107 99-125 (443)
344 1zuh_A Shikimate kinase; alpha 94.4 0.022 7.5E-07 53.6 3.5 24 83-106 8-31 (168)
345 3clv_A RAB5 protein, putative; 94.4 0.019 6.4E-07 54.7 3.0 23 84-106 9-31 (208)
346 4dsu_A GTPase KRAS, isoform 2B 94.4 0.019 6.5E-07 54.2 3.0 23 84-106 6-28 (189)
347 2hxs_A RAB-26, RAS-related pro 94.4 0.021 7.2E-07 53.4 3.3 23 84-106 8-30 (178)
348 1upt_A ARL1, ADP-ribosylation 94.3 0.02 6.7E-07 53.2 3.0 23 84-106 9-31 (171)
349 2iyv_A Shikimate kinase, SK; t 94.3 0.018 6.1E-07 55.0 2.7 24 83-106 3-26 (184)
350 3dl0_A Adenylate kinase; phosp 94.3 0.022 7.5E-07 55.9 3.4 23 84-106 2-24 (216)
351 2cxx_A Probable GTP-binding pr 94.3 0.018 6.1E-07 54.6 2.6 22 85-106 4-25 (190)
352 3bc1_A RAS-related protein RAB 94.3 0.02 6.8E-07 54.2 3.0 23 84-106 13-35 (195)
353 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.024 8.4E-07 57.8 3.8 26 81-106 3-28 (260)
354 1r8s_A ADP-ribosylation factor 94.3 0.021 7.1E-07 52.7 3.0 21 85-105 3-23 (164)
355 2pt5_A Shikimate kinase, SK; a 94.3 0.024 8.2E-07 53.1 3.5 23 84-106 2-24 (168)
356 2oil_A CATX-8, RAS-related pro 94.3 0.02 7E-07 54.7 3.0 23 84-106 27-49 (193)
357 1qf9_A UMP/CMP kinase, protein 94.3 0.022 7.7E-07 54.2 3.2 25 82-106 6-30 (194)
358 2qmh_A HPR kinase/phosphorylas 94.2 0.036 1.2E-06 54.6 4.5 36 69-105 22-57 (205)
359 3tlx_A Adenylate kinase 2; str 94.2 0.026 8.8E-07 57.0 3.7 26 81-106 28-53 (243)
360 2g6b_A RAS-related protein RAB 94.2 0.023 7.7E-07 53.3 3.0 23 84-106 12-34 (180)
361 2y8e_A RAB-protein 6, GH09086P 94.1 0.02 6.9E-07 53.4 2.6 23 84-106 16-38 (179)
362 2a9k_A RAS-related protein RAL 94.1 0.023 7.9E-07 53.5 3.0 23 84-106 20-42 (187)
363 1z0f_A RAB14, member RAS oncog 94.1 0.023 7.9E-07 53.0 3.0 23 84-106 17-39 (179)
364 3t1o_A Gliding protein MGLA; G 94.1 0.027 9.2E-07 53.5 3.4 25 84-108 16-40 (198)
365 2efe_B Small GTP-binding prote 94.1 0.024 8.3E-07 53.2 3.0 23 84-106 14-36 (181)
366 3con_A GTPase NRAS; structural 94.1 0.024 8.2E-07 53.9 3.0 23 84-106 23-45 (190)
367 1wf3_A GTP-binding protein; GT 94.0 0.026 8.9E-07 59.1 3.4 23 84-106 9-31 (301)
368 1moz_A ARL1, ADP-ribosylation 94.0 0.015 5.2E-07 54.8 1.4 23 82-104 18-40 (183)
369 3t5d_A Septin-7; GTP-binding p 94.0 0.02 6.9E-07 58.8 2.5 23 84-106 10-32 (274)
370 3cmu_A Protein RECA, recombina 94.0 0.34 1.2E-05 62.5 13.9 149 71-273 370-554 (2050)
371 1uj2_A Uridine-cytidine kinase 94.0 0.027 9.3E-07 57.0 3.4 24 83-106 23-46 (252)
372 3a8t_A Adenylate isopentenyltr 94.0 0.034 1.2E-06 59.2 4.2 26 81-106 39-64 (339)
373 1nrj_B SR-beta, signal recogni 93.9 0.025 8.7E-07 55.2 3.0 23 84-106 14-36 (218)
374 2bov_A RAla, RAS-related prote 93.9 0.026 8.9E-07 54.3 3.0 23 84-106 16-38 (206)
375 1jbk_A CLPB protein; beta barr 93.9 0.033 1.1E-06 52.3 3.6 27 80-106 41-67 (195)
376 1vg8_A RAS-related protein RAB 93.9 0.027 9.3E-07 54.3 3.0 23 84-106 10-32 (207)
377 2grj_A Dephospho-COA kinase; T 93.9 0.03 1E-06 54.7 3.4 24 82-105 12-35 (192)
378 2gf9_A RAS-related protein RAB 93.9 0.027 9.3E-07 53.7 3.0 23 84-106 24-46 (189)
379 3iby_A Ferrous iron transport 93.9 0.025 8.5E-07 57.8 2.8 23 84-106 3-25 (256)
380 2bme_A RAB4A, RAS-related prot 93.9 0.024 8.3E-07 53.5 2.6 23 84-106 12-34 (186)
381 1ksh_A ARF-like protein 2; sma 93.9 0.028 9.4E-07 53.3 3.0 25 82-106 18-42 (186)
382 3iev_A GTP-binding protein ERA 93.9 0.029 1E-06 58.8 3.4 23 84-106 12-34 (308)
383 3cbq_A GTP-binding protein REM 93.8 0.022 7.6E-07 55.1 2.3 22 84-105 25-46 (195)
384 3tkl_A RAS-related protein RAB 93.8 0.028 9.5E-07 53.6 3.0 23 84-106 18-40 (196)
385 3kkq_A RAS-related protein M-R 93.8 0.03 1E-06 52.8 3.0 23 84-106 20-42 (183)
386 2gf0_A GTP-binding protein DI- 93.8 0.026 9E-07 53.9 2.6 22 84-105 10-31 (199)
387 2xtp_A GTPase IMAP family memb 93.7 0.028 9.6E-07 56.9 2.9 23 84-106 24-46 (260)
388 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.031 1E-06 52.6 3.0 22 84-105 7-28 (186)
389 1zbd_A Rabphilin-3A; G protein 93.7 0.032 1.1E-06 53.7 3.2 23 84-106 10-32 (203)
390 2fg5_A RAB-22B, RAS-related pr 93.7 0.027 9.4E-07 53.9 2.6 23 84-106 25-47 (192)
391 1m7b_A RND3/RHOE small GTP-bin 93.7 0.027 9.4E-07 53.5 2.6 23 84-106 9-31 (184)
392 2cjw_A GTP-binding protein GEM 93.7 0.031 1.1E-06 53.9 3.0 22 84-105 8-29 (192)
393 2dby_A GTP-binding protein; GD 93.7 0.028 9.7E-07 60.6 3.0 22 85-106 4-25 (368)
394 1z06_A RAS-related protein RAB 93.7 0.032 1.1E-06 53.2 3.0 23 84-106 22-44 (189)
395 4fcw_A Chaperone protein CLPB; 93.7 0.034 1.2E-06 57.5 3.5 27 82-108 47-73 (311)
396 1a7j_A Phosphoribulokinase; tr 93.7 0.017 5.9E-07 60.2 1.2 26 81-106 4-29 (290)
397 3be4_A Adenylate kinase; malar 93.6 0.032 1.1E-06 55.0 3.1 26 81-106 4-29 (217)
398 2il1_A RAB12; G-protein, GDP, 93.6 0.03 1E-06 53.7 2.8 23 84-106 28-50 (192)
399 4dhe_A Probable GTP-binding pr 93.6 0.018 6.3E-07 56.4 1.2 23 84-106 31-53 (223)
400 3a1s_A Iron(II) transport prot 93.6 0.034 1.2E-06 56.8 3.2 23 84-106 7-29 (258)
401 2xb4_A Adenylate kinase; ATP-b 93.6 0.037 1.3E-06 55.0 3.4 23 84-106 2-24 (223)
402 2wsm_A Hydrogenase expression/ 93.5 0.032 1.1E-06 54.7 2.9 24 83-106 31-54 (221)
403 2a5j_A RAS-related protein RAB 93.5 0.034 1.2E-06 53.1 3.0 23 84-106 23-45 (191)
404 1jwy_B Dynamin A GTPase domain 93.5 0.031 1.1E-06 58.2 2.9 23 84-106 26-48 (315)
405 3bwd_D RAC-like GTP-binding pr 93.5 0.034 1.2E-06 52.1 3.0 23 84-106 10-32 (182)
406 3oes_A GTPase rhebl1; small GT 93.5 0.03 1E-06 54.0 2.6 23 84-106 26-48 (201)
407 2f6r_A COA synthase, bifunctio 93.5 0.034 1.2E-06 57.5 3.1 23 82-104 75-97 (281)
408 2qu8_A Putative nucleolar GTP- 93.5 0.034 1.2E-06 55.0 3.0 22 84-105 31-52 (228)
409 3i8s_A Ferrous iron transport 93.5 0.032 1.1E-06 57.4 2.9 23 84-106 5-27 (274)
410 1zd9_A ADP-ribosylation factor 93.5 0.035 1.2E-06 52.9 3.0 23 84-106 24-46 (188)
411 1x3s_A RAS-related protein RAB 93.4 0.036 1.2E-06 52.7 3.0 23 84-106 17-39 (195)
412 3t5g_A GTP-binding protein RHE 93.4 0.032 1.1E-06 52.5 2.6 22 84-105 8-29 (181)
413 3dz8_A RAS-related protein RAB 93.4 0.032 1.1E-06 53.3 2.6 23 84-106 25-47 (191)
414 4edh_A DTMP kinase, thymidylat 93.4 0.045 1.5E-06 54.4 3.7 28 80-107 4-31 (213)
415 2atv_A RERG, RAS-like estrogen 93.4 0.037 1.3E-06 53.1 3.0 23 84-106 30-52 (196)
416 3cph_A RAS-related protein SEC 93.4 0.036 1.2E-06 53.7 3.0 23 84-106 22-44 (213)
417 4bas_A ADP-ribosylation factor 93.4 0.035 1.2E-06 53.0 2.9 23 84-106 19-41 (199)
418 1zj6_A ADP-ribosylation factor 93.4 0.035 1.2E-06 52.8 2.8 22 84-105 18-39 (187)
419 3umf_A Adenylate kinase; rossm 93.4 0.043 1.5E-06 54.7 3.6 27 80-106 27-53 (217)
420 2bcg_Y Protein YP2, GTP-bindin 93.4 0.032 1.1E-06 53.9 2.6 23 84-106 10-32 (206)
421 2o52_A RAS-related protein RAB 93.4 0.035 1.2E-06 53.7 2.8 23 84-106 27-49 (200)
422 3exa_A TRNA delta(2)-isopenten 93.4 0.047 1.6E-06 57.5 4.0 25 82-106 3-27 (322)
423 3reg_A RHO-like small GTPase; 93.4 0.037 1.3E-06 52.9 3.0 23 84-106 25-47 (194)
424 2p5s_A RAS and EF-hand domain 93.4 0.037 1.3E-06 53.3 3.0 23 84-106 30-52 (199)
425 2h57_A ADP-ribosylation factor 93.4 0.027 9.4E-07 53.7 2.0 23 84-106 23-45 (190)
426 1ltq_A Polynucleotide kinase; 93.4 0.042 1.4E-06 56.8 3.6 22 83-104 3-24 (301)
427 2f7s_A C25KG, RAS-related prot 93.3 0.041 1.4E-06 53.6 3.3 23 84-106 27-49 (217)
428 2iwr_A Centaurin gamma 1; ANK 93.3 0.032 1.1E-06 52.4 2.3 22 84-105 9-30 (178)
429 2h17_A ADP-ribosylation factor 93.3 0.033 1.1E-06 52.7 2.4 22 84-105 23-44 (181)
430 2ew1_A RAS-related protein RAB 93.2 0.036 1.2E-06 54.1 2.6 23 84-106 28-50 (201)
431 1ak2_A Adenylate kinase isoenz 93.2 0.049 1.7E-06 54.4 3.7 26 81-106 15-40 (233)
432 3d3q_A TRNA delta(2)-isopenten 93.2 0.037 1.3E-06 59.0 2.9 24 83-106 8-31 (340)
433 3v9p_A DTMP kinase, thymidylat 93.2 0.036 1.2E-06 55.8 2.6 29 79-107 22-50 (227)
434 2p65_A Hypothetical protein PF 93.2 0.041 1.4E-06 51.7 2.9 27 80-106 41-67 (187)
435 3llu_A RAS-related GTP-binding 93.2 0.043 1.5E-06 52.8 3.1 24 84-107 22-45 (196)
436 1e4v_A Adenylate kinase; trans 93.2 0.041 1.4E-06 54.0 3.0 23 84-106 2-24 (214)
437 3c5c_A RAS-like protein 12; GD 93.1 0.043 1.5E-06 52.4 3.0 23 84-106 23-45 (187)
438 2fv8_A H6, RHO-related GTP-bin 93.1 0.038 1.3E-06 53.7 2.6 23 84-106 27-49 (207)
439 2q3h_A RAS homolog gene family 93.1 0.046 1.6E-06 52.5 3.2 23 84-106 22-44 (201)
440 2aka_B Dynamin-1; fusion prote 93.1 0.036 1.2E-06 57.1 2.6 23 84-106 28-50 (299)
441 3zvl_A Bifunctional polynucleo 93.1 0.043 1.5E-06 60.1 3.3 27 80-106 256-282 (416)
442 2fh5_B SR-beta, signal recogni 93.0 0.045 1.5E-06 53.2 3.0 23 84-106 9-31 (214)
443 3crm_A TRNA delta(2)-isopenten 93.0 0.045 1.5E-06 57.9 3.1 24 83-106 6-29 (323)
444 2fu5_C RAS-related protein RAB 93.0 0.031 1E-06 52.7 1.6 22 84-105 10-31 (183)
445 2j1l_A RHO-related GTP-binding 93.0 0.045 1.5E-06 53.6 2.9 22 84-105 36-57 (214)
446 2h92_A Cytidylate kinase; ross 93.0 0.039 1.3E-06 54.1 2.5 25 82-106 3-27 (219)
447 1gwn_A RHO-related GTP-binding 92.9 0.042 1.4E-06 53.7 2.6 23 84-106 30-52 (205)
448 3lv8_A DTMP kinase, thymidylat 92.9 0.051 1.7E-06 55.0 3.3 27 81-107 26-52 (236)
449 1sky_E F1-ATPase, F1-ATP synth 92.9 0.057 2E-06 59.9 3.9 35 71-106 141-175 (473)
450 2b6h_A ADP-ribosylation factor 92.8 0.043 1.5E-06 52.8 2.4 23 83-105 30-52 (192)
451 2gco_A H9, RHO-related GTP-bin 92.8 0.045 1.5E-06 52.9 2.6 23 84-106 27-49 (201)
452 1njg_A DNA polymerase III subu 92.7 0.062 2.1E-06 52.3 3.6 42 212-255 126-167 (250)
453 3tqf_A HPR(Ser) kinase; transf 92.7 0.087 3E-06 50.7 4.4 35 69-104 4-38 (181)
454 3def_A T7I23.11 protein; chlor 92.7 0.049 1.7E-06 55.5 2.9 23 84-106 38-60 (262)
455 2g3y_A GTP-binding protein GEM 92.7 0.058 2E-06 53.3 3.2 22 84-105 39-60 (211)
456 1h65_A Chloroplast outer envel 92.6 0.05 1.7E-06 55.6 2.8 23 84-106 41-63 (270)
457 3tmk_A Thymidylate kinase; pho 92.6 0.06 2.1E-06 53.6 3.2 29 80-108 3-31 (216)
458 1p5z_B DCK, deoxycytidine kina 92.6 0.042 1.4E-06 55.9 2.1 27 80-106 22-48 (263)
459 4tmk_A Protein (thymidylate ki 92.6 0.062 2.1E-06 53.4 3.3 27 81-107 2-28 (213)
460 3ld9_A DTMP kinase, thymidylat 92.6 0.071 2.4E-06 53.4 3.7 28 80-107 19-46 (223)
461 2atx_A Small GTP binding prote 92.6 0.052 1.8E-06 51.8 2.6 23 84-106 20-42 (194)
462 2ocp_A DGK, deoxyguanosine kin 92.6 0.063 2.2E-06 53.8 3.4 26 81-106 1-26 (241)
463 3sr0_A Adenylate kinase; phosp 92.5 0.067 2.3E-06 52.8 3.4 23 84-106 2-24 (206)
464 3cnl_A YLQF, putative uncharac 92.5 0.061 2.1E-06 55.1 3.2 25 83-107 100-124 (262)
465 4djt_A GTP-binding nuclear pro 92.4 0.029 1E-06 54.7 0.7 23 84-106 13-35 (218)
466 2hf9_A Probable hydrogenase ni 92.3 0.06 2E-06 52.9 2.8 24 83-106 39-62 (226)
467 3cpj_B GTP-binding protein YPT 92.3 0.064 2.2E-06 52.8 3.0 23 84-106 15-37 (223)
468 3foz_A TRNA delta(2)-isopenten 92.2 0.08 2.7E-06 55.7 3.8 25 82-106 10-34 (316)
469 2hup_A RAS-related protein RAB 92.2 0.06 2.1E-06 52.1 2.6 23 84-106 31-53 (201)
470 2x77_A ADP-ribosylation factor 92.1 0.043 1.5E-06 52.2 1.4 21 84-104 24-44 (189)
471 2yc2_C IFT27, small RAB-relate 92.1 0.031 1.1E-06 53.7 0.4 22 84-105 22-43 (208)
472 3euj_A Chromosome partition pr 92.0 0.21 7.1E-06 55.7 6.9 71 192-269 377-464 (483)
473 3q3j_B RHO-related GTP-binding 91.9 0.076 2.6E-06 52.0 3.0 23 84-106 29-51 (214)
474 3eph_A TRNA isopentenyltransfe 91.9 0.081 2.8E-06 57.6 3.4 25 82-106 2-26 (409)
475 4gzl_A RAS-related C3 botulinu 91.8 0.069 2.4E-06 51.8 2.6 22 84-105 32-53 (204)
476 1sxj_D Activator 1 41 kDa subu 91.8 0.025 8.5E-07 59.6 -0.7 42 212-255 133-174 (353)
477 2r62_A Cell division protease 91.7 0.023 7.8E-07 57.8 -1.1 29 76-106 40-68 (268)
478 2j0v_A RAC-like GTP-binding pr 91.7 0.074 2.5E-06 51.6 2.6 23 84-106 11-33 (212)
479 3cmu_A Protein RECA, recombina 91.6 0.23 7.9E-06 64.0 7.5 35 69-103 1066-1102(2050)
480 2orw_A Thymidine kinase; TMTK, 91.3 0.11 3.6E-06 50.3 3.3 53 212-269 76-137 (184)
481 3n70_A Transport activator; si 91.2 0.11 3.8E-06 47.8 3.2 43 212-256 76-118 (145)
482 2chg_A Replication factor C sm 91.1 0.11 3.7E-06 49.9 3.1 41 212-254 102-142 (226)
483 1g5t_A COB(I)alamin adenosyltr 91.1 0.18 6.3E-06 49.3 4.7 72 200-272 106-181 (196)
484 1ypw_A Transitional endoplasmi 91.0 0.035 1.2E-06 66.1 -0.6 33 75-107 504-536 (806)
485 3syl_A Protein CBBX; photosynt 91.0 0.11 3.8E-06 53.6 3.3 27 80-106 65-91 (309)
486 1puj_A YLQF, conserved hypothe 90.7 0.13 4.5E-06 53.2 3.4 25 82-106 120-144 (282)
487 3r7w_A Gtpase1, GTP-binding pr 90.6 0.16 5.3E-06 53.1 4.0 24 82-105 3-26 (307)
488 3p32_A Probable GTPase RV1496/ 90.6 0.14 4.7E-06 54.8 3.6 26 81-106 78-103 (355)
489 2x2e_A Dynamin-1; nitration, h 90.6 0.082 2.8E-06 56.4 1.8 23 84-106 33-55 (353)
490 1d2n_A N-ethylmaleimide-sensit 90.5 0.14 4.8E-06 52.1 3.4 26 80-105 62-87 (272)
491 2hjg_A GTP-binding protein ENG 90.4 0.11 3.9E-06 57.0 2.9 22 84-105 5-26 (436)
492 3gmt_A Adenylate kinase; ssgci 90.4 0.14 4.7E-06 51.5 3.2 24 83-106 9-32 (230)
493 3th5_A RAS-related C3 botulinu 89.8 0.052 1.8E-06 52.4 0.0 21 84-104 32-52 (204)
494 1wxq_A GTP-binding protein; st 90.2 0.13 4.3E-06 56.1 2.9 22 85-106 3-24 (397)
495 2qgz_A Helicase loader, putati 90.2 0.16 5.6E-06 53.1 3.7 52 210-261 212-265 (308)
496 3uk6_A RUVB-like 2; hexameric 90.0 0.15 5.1E-06 54.1 3.2 28 80-107 68-95 (368)
497 3t15_A Ribulose bisphosphate c 90.0 0.14 4.8E-06 53.1 2.9 25 82-106 36-60 (293)
498 3eie_A Vacuolar protein sortin 89.9 0.17 5.8E-06 53.1 3.6 27 80-106 49-75 (322)
499 3gj0_A GTP-binding nuclear pro 89.9 0.099 3.4E-06 51.1 1.6 22 84-105 17-39 (221)
500 3geh_A MNME, tRNA modification 89.8 0.12 4.2E-06 57.3 2.5 24 82-105 224-247 (462)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.9e-48 Score=416.04 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=197.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..|+++||+++|..++ +...+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3599999999995321 2357999999999999999999999999999999999999886 9999999998532
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.++.+|||+|++.+++.+||+||+.++.... ..++++.+++++++|+.+||.+..++ ++.+|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 1357999999999999999999999987654 34567778899999999999887776 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||+|||||+.+|++|||||||||||+.++..+++.|+++++ .|.|||++||++ +++.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 599999999995 6788999999999999999999998
Q ss_pred hHH
Q 005142 281 AAF 283 (712)
Q Consensus 281 ~~~ 283 (712)
++.
T Consensus 250 ev~ 252 (366)
T 3tui_C 250 EVF 252 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-47 Score=394.72 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=189.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~----- 126 (712)
|+++||+++|..+. ..+.+|+|||+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999886 99999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCChHHHH
Q 005142 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERR 201 (712)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSGGerq 201 (712)
++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.++|.+.. +. ++.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHH
Confidence 135999999999999999999999986543222345666678899999999997643 55 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ + +.++||++++|++|+++..|+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999764 99999999996 3 56899999999999999999877
Q ss_pred hH
Q 005142 281 AA 282 (712)
Q Consensus 281 ~~ 282 (712)
+.
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 64
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.1e-48 Score=416.49 Aligned_cols=217 Identities=24% Similarity=0.389 Sum_probs=194.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----C--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~----~-- 124 (712)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999986 99999999875 1
Q ss_pred -CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
...+.+|||+|+..+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..|+. +.+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRY-----PHELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSC-----GGGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHH
Confidence 12367999999999999999999999986543 234566678899999999999888774 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|.|+|++|||. +++..+||+|++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999888875 4799999999995 689999999999999999999999886
Q ss_pred HH
Q 005142 283 FE 284 (712)
Q Consensus 283 ~~ 284 (712)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-47 Score=417.51 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=197.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||+++| +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999986 9999999997532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.+|||+|++.++|.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHHHHHHH
Confidence 67999999999999999999999987654 345777788999999999999887764 5679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|++||||||||+||+..+.++.+.|+++.++ |.|+|++|||. +++..+||+|++|++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68999999999999999999999998753
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.4e-47 Score=396.96 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---C--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L-- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~---~-- 125 (712)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999998 3467999999999999999999999999999999999999886 999999998753 1
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 --SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
.++.++||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+..++. +.+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHH
Confidence 1246999999999999999999999964 322 234455567889999999998877764 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987899999999996 678889999999999999999998876
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-47 Score=397.69 Aligned_cols=216 Identities=28% Similarity=0.403 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.| +.+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 48999999998 3467999999999999999999999999999999999999885 9999999987531
Q ss_pred -------------CcCcEEEEecCCCCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 005142 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (712)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~ 190 (712)
.++.++||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+. .++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~---- 150 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY---- 150 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC----
Confidence 1246999999999999999999999864 322 23445556788999999999887 7764
Q ss_pred ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++
T Consensus 151 -~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 151 -PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp -GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999987899999999996 678889999999999
Q ss_pred CeEEEecChhhHH
Q 005142 271 GKTVYFGETSAAF 283 (712)
Q Consensus 271 G~iv~~G~~~~~~ 283 (712)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988664
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.2e-47 Score=387.57 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||++.| +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
.+.++||+|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++.+ .+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2334555678899999999988877754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+ +.+ ++||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987799999999996 455 89999999999999998863
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-47 Score=401.59 Aligned_cols=218 Identities=28% Similarity=0.423 Sum_probs=191.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 599999999982 2345999999999999999999999999999999999999885 9999999998631
Q ss_pred --CcCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 126 --SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 126 --~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
.++.+|||+|++ ..+..+||+||+.|+.... ..+.++.+++++++++.+||.+..+..+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 135699999996 3344789999999987542 3456677788999999999988877754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhh
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~ 281 (712)
|+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +++.++||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999997 56888999999999999999999988
Q ss_pred HHH
Q 005142 282 AFE 284 (712)
Q Consensus 282 ~~~ 284 (712)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 653
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-46 Score=391.89 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=192.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----~ 126 (712)
.|+++||++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++... .
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
++.++||+|++.+++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976543 1234455577889999999988877754 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999996 57788999999999999999999887654
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.4e-47 Score=393.60 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 59999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (712)
++.++||+|++.+++.+||+||+.++... .... ....++.+++++++++.+||++..++.+ ..
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 24699999999999999999999987532 1110 0123445577899999999988777754 57
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv 274 (712)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999997 4678899999999999999
Q ss_pred EecChhh
Q 005142 275 YFGETSA 281 (712)
Q Consensus 275 ~~G~~~~ 281 (712)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999887
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.8e-46 Score=407.74 Aligned_cols=217 Identities=25% Similarity=0.386 Sum_probs=194.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005142 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (712)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (712)
..+.+|||+|+..+|+.+||+||+.|+...+ ..++++.+++++++++.+||.+..++. +.+|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHHHH
Confidence 2367999999999999999999999987653 234566678899999999998887774 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChh
Q 005142 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (712)
Q Consensus 202 RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~ 280 (712)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.+ .|.|+|++|||+ .++..+||++++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999976 499999999995 6788999999999999999999998
Q ss_pred hHHH
Q 005142 281 AAFE 284 (712)
Q Consensus 281 ~~~~ 284 (712)
++.+
T Consensus 226 ~l~~ 229 (372)
T 1g29_1 226 EVYD 229 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-46 Score=407.64 Aligned_cols=217 Identities=26% Similarity=0.402 Sum_probs=194.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 38999999988 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.+|||+|+..+|+.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAIAR 146 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987653 234566678899999999999887774 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|++|||||||||||+.++..+.+.|+++.+ .|.|+|++|||+ +++..+||+|++|++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999976 499999999995 67889999999999999999999988753
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-46 Score=407.72 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=193.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 38999999998 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.+|||+|+..+|+.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVALAR 146 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986532 233445567899999999998887774 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|++|||||||||||+.++..+.+.|+++.+ .|.|+|++|||+ +++..+||++++|++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999976 499999999995 67889999999999999999999988753
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.4e-46 Score=405.10 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=195.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
...|+++||+++|. +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 45699999999872 2357999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..+.+|||+|+..+|+.+||+||+.|+...+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 234566678899999999999887774 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ +++..+||++++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999764 99999999995 6789999999999999999999998764
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.8e-46 Score=406.85 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEEccCCcccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 005142 51 RLTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--- 125 (712)
.|+++||+++| +++. +|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 38999999998 3456 999999999999999999999999999999999999886 9999999986421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005142 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (712)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (712)
..+.+|||+|+..+|+.+||+||+.|+...+ ..++++.+++++++++.+||.+..++. +++||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~-----~~~LSGGq~ 146 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF-----PRELSGAQQ 146 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHH
Confidence 2467999999999999999999999986543 234566678899999999999887774 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++|||+ +++..+||++++|++|+++..|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999976 499999999995 678999999999999999999999
Q ss_pred hhHH
Q 005142 280 SAAF 283 (712)
Q Consensus 280 ~~~~ 283 (712)
+++.
T Consensus 226 ~~l~ 229 (353)
T 1oxx_K 226 EDLY 229 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-46 Score=386.15 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 126 (712)
.|+++||++.+ +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 59999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHH
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
.+.++||+|++.+++.+||+||+.++.... ...++.+++++++++.++ |.+..++. +..|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 245999999999999999999999864211 122344567888999994 87766664 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999996 5788999999999999999999887653
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.7e-46 Score=391.03 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=190.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 126 (712)
..|+++||++.+ +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 469999999998 4578999999999999999999999999999999999999886 89999999985421
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ .+|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 246899999999888899999999876432 12234567889999999988877754 579999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 205 IA~aL~~------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+ +++.++||++++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999765 57999999995 6788899999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 998763
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-46 Score=407.29 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 127 (712)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 39999999998 3467999999999999999999999999999999999999886 9999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005142 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
+.+|||+|+..+|+.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999975432 234566678899999999999887774 5679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++..
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 67889999999999999999999988753
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.6e-46 Score=397.74 Aligned_cols=247 Identities=25% Similarity=0.329 Sum_probs=197.9
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 005142 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (712)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~ 80 (712)
+++.++++|++++++.++....... . . . .......|+++||++.|. +.+.+|+|||++|+
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~~--~----------~-~---~~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~ 78 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLPG--A----------G-P---LRFQKGRIEFENVHFSYA----DGRETLQDVSFTVM 78 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCTT--C----------B-C---CCCSSCCEEEEEEEEESS----TTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccccccc--c----------c-c---cCCCCCeEEEEEEEEEcC----CCCceeeeeeEEEc
Confidence 3678899999999987665432100 0 0 0 001123599999999883 24679999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
+||++||+||||||||||+++|+|+++|. +|+|.+||+++... ++.++||+|++.+|+. ||+|||.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT 154 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc
Confidence 99999999999999999999999999886 99999999986431 3569999999999865 999999987431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
... +.+.+.++..++. +..++.+|+ .+..|||||||||+|||||+.+|+|||||||||+||+.
T Consensus 155 -----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 -----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp -----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred -----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 112 2233444444443 356777775 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
++..|.+.|+++.+ ++|+|+++|++ +.+. .||+|++|++|++++.|+.+++.+
T Consensus 225 ~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 225 NERAIQASLAKVCA-NRTTIVVAHRL-STVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSH-HHHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEcCh-HHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999864 79999999996 4454 499999999999999999988764
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-45 Score=399.41 Aligned_cols=211 Identities=26% Similarity=0.427 Sum_probs=188.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++||+++| +.+ +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 7899999988 335 999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.+|||+|+..+|+.+||+||+.|+...+. .+++ ++++++++.++|++..|+. +.+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHHH
Confidence 69999999999999999999999876431 1122 6788999999999888775 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 6789999999999999999999998764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2e-45 Score=384.61 Aligned_cols=221 Identities=27% Similarity=0.363 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~ 128 (712)
.|+++||++.|..++...+.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 48899999998310000157999999999999999999999999999999999999885 9999999987531 235
Q ss_pred cEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChHHHHHHHH
Q 005142 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.++||+|++ .+++.+||+||+.++..... +.++.+++++++++.+||. +..++.+ .+|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~l 149 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAI 149 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHH
Confidence 699999995 56677899999998753221 1222345688999999998 7777644 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++.+
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999987799999999997 46778899999999999999999887654
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-45 Score=378.18 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 128 (712)
|+++||++.| +. +|+|+|+++++ |+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6889999998 22 59999999999 999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999864321 11223567889999999988777754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 489999999996 5788999999999999999999988764
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-45 Score=380.79 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCCC--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~i~G~~~~~~-- 126 (712)
.|+++||++.+ +.+.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 48999999998 346799999999999999999999999999999999998 5554 99999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcccCC-CChHHH
Q 005142 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGER 200 (712)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~-LSGGer 200 (712)
...++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..++.+ .. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 23489999999999999999999986532111112234445678899999999 46677644 46 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEecCh
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~G~~ 279 (712)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999977799999999997 456677 599999999999999998
Q ss_pred h
Q 005142 280 S 280 (712)
Q Consensus 280 ~ 280 (712)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4e-45 Score=384.61 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=184.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--C--
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L-- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~--~-- 125 (712)
..|+++||++.| +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 469999999998 3467999999999999999999999999999999999999886 999999998753 1
Q ss_pred ---CcCcEEEEecCCCC--CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005142 126 ---SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l--~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (712)
.++.++||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..++.+ ..|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 13569999999754 2457999999886321100 01112344567889999999988777754 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--I~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ +++.++||++++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999997779999 9999996 5677899999999999999999
Q ss_pred ChhhH
Q 005142 278 ETSAA 282 (712)
Q Consensus 278 ~~~~~ 282 (712)
+++++
T Consensus 246 ~~~~~ 250 (279)
T 2ihy_A 246 AVEDI 250 (279)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 88765
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.5e-44 Score=370.46 Aligned_cols=210 Identities=27% Similarity=0.341 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~----~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQ----AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEET----TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeC----CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 489999999982 1467999999999999999999999999999999999999886 999982 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL 209 (712)
+||+|++.+++.+||+||+.++....... .....+.+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAI 143 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 99999999998999999999875322110 0112344567889999999988777654 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 210 ~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+ ++.|+++++
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999876 99999999996 57788999999999999 999988765
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.8e-44 Score=375.09 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCCC--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~i~G~~~~~~-- 126 (712)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|+. +| .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCH
Confidence 49999999998 3467999999999999999999999999999999999984 34 489999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-LR---LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
...++||+|++.+++.+||.|++.+... .. .....+.++..++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1248999999999999999999987542 11 111223445567889999999996 45665432 14999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhc-CCeEEEEeCCeEEEe
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~-~D~v~lL~~G~iv~~ 276 (712)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999977799999999996 456665 899999999999999
Q ss_pred cChhhHHH
Q 005142 277 GETSAAFE 284 (712)
Q Consensus 277 G~~~~~~~ 284 (712)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99987643
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.1e-44 Score=377.82 Aligned_cols=217 Identities=29% Similarity=0.385 Sum_probs=178.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.|.. ++.+.+|+|||+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 16 ~l~~~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPN--HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTT--CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 5999999998721 01267999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGG 198 (712)
.++.++||+|++.+++ .||+||+.++.... . ..++ ....++++++.+ ||.+..+. .+..||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 1246999999998887 49999999864211 1 1111 122345677777 66555544 45679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ +.+ ..||++++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 589999999996 444 459999999999999999
Q ss_pred ChhhHHH
Q 005142 278 ETSAAFE 284 (712)
Q Consensus 278 ~~~~~~~ 284 (712)
+++++.+
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887643
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.6e-44 Score=369.72 Aligned_cols=214 Identities=28% Similarity=0.451 Sum_probs=179.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~---- 125 (712)
..++++||++.|. ++.+.+|+|||+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 6 ~~~~~~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 3689999999872 12357999999999999999999999999999999999999886 9999999988532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCh
Q 005142 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISG 197 (712)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSG 197 (712)
.++.++||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..+ +.++. .+..|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCH
Confidence 1246999999998887 599999987531 111 234667777788765443 33332 4678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEec
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G 277 (712)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 5899999999974 44 569999999999999999
Q ss_pred ChhhHH
Q 005142 278 ETSAAF 283 (712)
Q Consensus 278 ~~~~~~ 283 (712)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987763
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.1e-43 Score=367.79 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++. .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|++...
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4889999863 589999999999999999999999999999999999887 5 999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
.++.++||+|++.+++.+||+||+.++.. .. .. +++++++++.+||.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHH
Confidence 12469999999999999999999987531 11 11 45688899999998877764 45799999999999
Q ss_pred HHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 206 A~aL~~~P~-------llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|++|+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+.++||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999996 57778999999999999999998
Q ss_pred hhhH
Q 005142 279 TSAA 282 (712)
Q Consensus 279 ~~~~ 282 (712)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-44 Score=368.86 Aligned_cols=213 Identities=26% Similarity=0.429 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 126 (712)
|+++||++.+. +.+.+|+|||+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999998872 2367999999999999999999999999999999999999885 9999999987531 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCcccCCCChHH
Q 005142 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (712)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSGGe 199 (712)
++.++||+|++.+++. ||+||+.++.. + ... .++++++++.+++.+..+.. ++ ..+..|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999988875 99999987521 1 111 23467788889987765543 22 2467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecCh
Q 005142 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (712)
Q Consensus 200 rqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~ 279 (712)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++ +.+ +.||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 444 56999999999999999998
Q ss_pred hhHHH
Q 005142 280 SAAFE 284 (712)
Q Consensus 280 ~~~~~ 284 (712)
+++..
T Consensus 222 ~~~~~ 226 (243)
T 1mv5_A 222 NELVA 226 (243)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=7e-44 Score=360.97 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=173.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
+..|+++||++.+ +. .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 4579999999987 34 7999999999999999999999999999999999999886 9999999987532346
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++||+|++.+++.+||+||+.+...... .. .+ +++++++++.+||++. +.. +.+|||||||||+||+|
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 147 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999998765421 11 11 3568889999999876 553 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..++|+++++ +|++
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999987789999999997 4677888888755 3443
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-43 Score=365.10 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~ 129 (712)
|+++||++.+.... ..+.+|+|+|++++ ||+++|+|||||||||||++|+|++ |+ +|+|.++|++... .++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999983210 11679999999999 9999999999999999999999999 86 9999999987521 2457
Q ss_pred EE-EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHHH
Q 005142 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 130 ~~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++. +.+|||||||||+||+
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 99 99999887 789999999876542 11 135678899999998 777764 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC-eEEEEeCCeEEEecChhhHHH
Q 005142 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 208 aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D-~v~lL~~G~iv~~G~~~~~~~ 284 (712)
||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999998854 999999996 56788999 999999999999999987653
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-42 Score=362.49 Aligned_cols=214 Identities=28% Similarity=0.398 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.|+++||++.+.. ...+.+|+|||+++++||+++|+||||||||||+++|+|++++ +|+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPK--QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTT--CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 5999999998831 1124699999999999999999999999999999999999864 7999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChH
Q 005142 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGG 198 (712)
.++.++||+|++.+++ .||+||+.++.. .... +.+.+.++.+++. +..|+.++. .+..||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHH
Confidence 1356999999999886 599999987521 1111 2345566666553 344555544 56789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 899999999974 44 5699999999999999999
Q ss_pred hhhHHH
Q 005142 279 TSAAFE 284 (712)
Q Consensus 279 ~~~~~~ 284 (712)
++++..
T Consensus 237 ~~~l~~ 242 (260)
T 2ghi_A 237 HKDLLK 242 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887643
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-43 Score=406.88 Aligned_cols=247 Identities=24% Similarity=0.375 Sum_probs=198.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+... .+ ... ......++++|++++|.. +.+.+|+|+|+++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~--------~~~----~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA--------LAL----PNVEGSVSFENVEFRYFE---NTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC--------BCC----SCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc--------ccc----CCCCCcEEEEEEEEEcCC---CCCcceeceEEEEcC
Confidence 57889999999999776543200 00 000 011235999999998832 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-- 442 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-- 442 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987542 13579999999999976 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.++ +.+.++.. .+++..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 ---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 443 ---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 112222 22222322 345567888876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +|+|+|+++|+++ . .+.||+|++|++|++++.|+.+++.+
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999984 5899999999974 3 46899999999999999999998764
No 35
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4e-43 Score=405.26 Aligned_cols=247 Identities=26% Similarity=0.319 Sum_probs=198.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.+|..+... .+ .. .......++++|+++++.. +++.+|+|+|+++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~----~~--------~~----~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGV----GA--------QP----IEIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCT----TC--------CC----CCCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCC----Cc--------cc----cCCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 57889999999998776543200 00 00 0011235999999998842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|+++|. +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 440 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-- 440 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 99999999985421 3569999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
. .+. +.+.+.++..+ +.+..||.+|+ .+..||||||||++|||||+++|++|+|||||||||+.+
T Consensus 441 --~-~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 441 --T-ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp --S-CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred --C-CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 122 22334444443 44567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|+++++.+
T Consensus 513 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999885 4799999999975 34 5699999999999999999988754
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.3e-42 Score=400.26 Aligned_cols=250 Identities=28% Similarity=0.397 Sum_probs=199.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeE-EEEEeEEEEEEccCCcccceeeceEEEEe
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSAR-LTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~~~iL~~vs~~i~ 80 (712)
++.+|.+|+.++++.+|..+.- .+ ... .....-. ++++|+++++.. ..++.+|+|+|++++
T Consensus 307 ~~~~s~~ri~~~l~~~~~~~~~--~~-----------~~~---~~~~~~~~i~~~~v~~~y~~--~~~~~vl~~isl~i~ 368 (595)
T 2yl4_A 307 KGLGAGGRLWELLEREPKLPFN--EG-----------VIL---NEKSFQGALEFKNVHFAYPA--RPEVPIFQDFSLSIP 368 (595)
T ss_dssp HHHHHHHHHHHHHTCCCSSCSS--CS-----------BCC---CTTTCCCCEEEEEEEEECSS--CTTSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCccCCC--CC-----------CCC---CcCCCCCeEEEEEEEEEeCC--CCCCccccceEEEEc
Confidence 5778999999999876653210 00 000 0011224 999999999832 113569999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
+||++||+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||+|++.+++. ||+||+.++...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 444 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADD 444 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCC
Confidence 99999999999999999999999999886 9999999998642 13569999999999875 999999986431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
. ...+ +++++++++.+++. +..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.
T Consensus 445 ~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 445 P--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp T--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred c--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 1 0112 24466777777653 457888876 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.
T Consensus 518 ~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 518 NEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999976 899999999974 44 569999999999999999988764
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.3e-42 Score=398.00 Aligned_cols=246 Identities=27% Similarity=0.372 Sum_probs=199.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. +.. ..+ .....++++|++++|.. +++.+|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~---------~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE----GKR---------VID-----RATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC----CCB---------CCS-----CCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC----CCC---------CCC-----CCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 578899999999987665321 000 000 01224999999998831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999886 99999999986421 3569999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+. +++++.++.+++. +..||.+|+ .+..||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 1222 3456667766664 356788876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++.+ |+|+|+++|++. . .+.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-H-HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999965 899999999975 3 45799999999999999999987654
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-42 Score=397.99 Aligned_cols=246 Identities=28% Similarity=0.390 Sum_probs=199.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|.+|+.++++.++..+. +..+ .+ .....++++|++++|.. +++.+|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~~---------~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKYE---------AE-----RVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCCC---------CC-----CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578899999999986654321 0000 00 01235999999999831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999886 8999999987532 23579999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+ ..+ ++++++.++.+++.+ ..||.+|+ .+..||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 234666777776643 46777776 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999864 899999999974 44 5799999999999999999887643
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-42 Score=402.20 Aligned_cols=245 Identities=25% Similarity=0.355 Sum_probs=196.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.++..+... + .. .......|+++|+++.+. +++.+|+|+|+++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~-----~--------~~----~~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD-----A--------VE----LREVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS-----C--------CC----CCSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-----C--------CC----CCCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 57889999999998766543200 0 00 001123599999999873 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 455 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG- 455 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 99999999986421 3579999999999975 999999876321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
.+.++ +.+.++..+ +.+..||.+|+ ....||||||||++|||||+.+|++|+||||||+||+.+
T Consensus 456 ----~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 456 ----ATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ----CCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ----CCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11222 233333333 34566788875 457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|+++++.+
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999975 44 5599999999999999999988754
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6e-42 Score=350.61 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+.. +.+.+|+|||+++++||+++|+||||||||||+++|+|+++|. +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998731 2467999999999999999999999999999999999999886 99999998 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCChHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRv 203 (712)
+||+|++.+++. ||+||+.++... .. ...++.++.+++.+. .++.++. .+..|||||||||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999998886 999999875321 11 112334444444322 2334433 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++ +.+ +.||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45554 489999999996 445 46999999999999999998876
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=352.20 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=166.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++.+.. .++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3899999998821 1467999999999999999999999999999999999999885 99999998 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA 206 (712)
+||+|++.+ +.+||+||+.++... . .+. .+.+.+ +.+.+++.+ ..++.++ ..+..|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~--~----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQL--E----EPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCC--C----TTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCcccc--C----HHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 999999865 578999999886421 1 111 111111 222333321 2233343 35678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHH
Q 005142 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (712)
Q Consensus 207 ~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 283 (712)
|||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 5899999999975 44 579999999999999999988764
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=375.13 Aligned_cols=214 Identities=24% Similarity=0.307 Sum_probs=179.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 126 (712)
..|+++||+++|.. +.+.+|+|||+++++||+++|+|||||||||||++|+|+++ . +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999832 34679999999999999999999999999999999999986 4 89999999875321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------cccCCCChH
Q 005142 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (712)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSGG 198 (712)
++.++||+|++.+|+ +||+||+.+.. ... ++++.++++.++|.+..+..... .....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 357999999999998 59999996421 111 24577889999998766654321 122349999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|||||+|||||+.+|++|||||||||||+.++..+.+.|+++. .+.|+|+++||. +....||+|++|++|++++.|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 579999999996 3456799999999999999999
Q ss_pred hhhHHH
Q 005142 279 TSAAFE 284 (712)
Q Consensus 279 ~~~~~~ 284 (712)
++++.+
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-41 Score=422.57 Aligned_cols=250 Identities=26% Similarity=0.412 Sum_probs=204.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+..... .+. .+..-.|+++|++++|+.+ .+.++|+|||++|+|
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~------------~~~----~~~~g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLA------------GEK----KKLYGKVIFKNVRFAYPER--PEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCC------------SBC----CCCCCCEEEEEEEECCTTS--CSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCC------------CCC----CCCCCeEEEEEEEEeCCCC--CCCccccceeEEECC
Confidence 4678999999999987775531110 000 0112359999999998432 345799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|.|+++|. +|+|.+||.+++. .+++++|||||+.+|+. ||+|||.|+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999998643 24789999999999988 99999987642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
|...+.++ +.+.++..+ |++..||.||+ ....||||||||++|||||+++|+||+||||||+||+++
T Consensus 1179 -~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 22233333 444444444 46778999997 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+++++|+++++++
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998764 47999999999864 67899999999999999999998875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-41 Score=419.99 Aligned_cols=249 Identities=26% Similarity=0.349 Sum_probs=204.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+.....+. ........++++|+++.|+. ..++++|+|+|+++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~---------------~~~~~~g~I~~~nvsF~Y~~--~~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGR---------------KDMKIKGDITVENVHFTYPS--RPDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCC---------------CCCCCCCCEEEEEEEECCSS--STTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCccccccccccc---------------cCCCCCCcEEEEEeeeeCCC--CCCCceeeceEEeecC
Confidence 578999999999998877653111100 01112235999999999843 2356799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||.+||+||||||||||+++|.|.++|. +|+|.+||++++.. ++.++||+|++.+|+. ||+|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999986 99999999986432 3579999999999987 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
..+.++ +.+.++.. .|++..||.||+. ...||||||||++||||++++|+||+||||||+||+++
T Consensus 518 ---~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHHH----HHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 123333 33333333 3567889999984 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
+..+.+.|+++. +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 590 e~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999886 4899999999985 468899999999999999999998764
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.2e-40 Score=406.66 Aligned_cols=251 Identities=27% Similarity=0.393 Sum_probs=199.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+.....+. .+ ....-.|+++|++++|..+ .++.+|+|||+++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~-----------~~----~~~~g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGH-----------KP----DNIQGNLEFKNIHFSYPSR--KEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCC-----------CC----TTCCCCEEEEEEEECCSST--TSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCC-----------CC----CCCCCeEEEEEEEEEcCCC--CCCcceecceEEEcC
Confidence 578899999999998776543111000 00 0112359999999998421 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|.++|+ +|+|.+||+++... ++.+|||+|++.+|+. ||+||+.++..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-- 489 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 99999999985421 3569999999999987 99999999742
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
..+.++..+.+ .+.++ .+.+..||.+|+ .+..||||||||++|||||+.+|+||+||||||+||+.++.
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 490 ---DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 12233322221 22233 345677899986 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+.+.|+++. +|+|+|+++|+++ .+ ..||+|++|++|++++.|+.+++.+
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 5899999999964 45 5599999999999999999998764
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.4e-39 Score=344.01 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=154.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|+++||++. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 5899999974 256999999999999999999999999999999999999885 99999988 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCChHHHHHH
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRv 203 (712)
+||+|++.+++. ||+||+. +.. . .. ..+.+.++.+++.+. .++.++. .+..||||||||+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~--~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS--Y----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC--C----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc--c----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999988886 9999998 321 1 11 123334444555332 2333432 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++ ..+ +.||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 4554 489999999996 444 56999999999999999999876
Q ss_pred H
Q 005142 283 F 283 (712)
Q Consensus 283 ~ 283 (712)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-38 Score=397.12 Aligned_cols=255 Identities=26% Similarity=0.394 Sum_probs=199.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|++|+.++++.+|..+.....+. .+ ......++++|+++.|... .++.+|+|+|+++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~-----------~~----~~~~g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGL-----------KP----NMLEGNVQFSGVVFNYPTR--PSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCC-----------CT----TTTSCCEEEEEEEBCCSCG--GGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCcccccccccc-----------cc----cCCCCcEEEEEEEEECCCC--CCCeeecceeEEEcC
Confidence 567899999999998776543111100 00 0112359999999988421 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
||++||+||||||||||+++|+|+++|. +|+|.+||++++. .++.++||||++.+|+. ||+||+.++...+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC
Confidence 9999999999999999999999999886 9999999987542 14679999999988865 9999998764211
Q ss_pred CCCCCCHHHHHHHHHHH-HH--HcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERT-II--EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~-l~--~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i 233 (712)
..+.++..+..++. ++ .-.+.+..||.+|+ .+..||||||||++|||||+++|+||+|||||+|||+.++..+
T Consensus 1135 ---~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1135 ---VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp ---CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 12333322222111 01 12356678999986 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 005142 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (712)
Q Consensus 234 ~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 284 (712)
.+.|+++ .+|+|||+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 1211 ~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1211 QEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999885 45899999999975 44 6699999999999999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-35 Score=342.73 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=177.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...++++|+++.+ ++ ..|+++|+++++||+++|+|||||||||||++|+|+++|. +|+|.++ .
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~--------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD--------L 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC--------C
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe--------e
Confidence 4579999999887 22 3689999999999999999999999999999999999886 8998761 4
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.+ ..|||||||||+||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 5999999988778899999887641110 011356788999999988777754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC--CeEEEecChhhHHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 284 (712)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++||+ .++..+||++++|++ |+++..|+++++.+
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999974 699999999995 678899999999986 88889999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-35 Score=338.88 Aligned_cols=206 Identities=26% Similarity=0.302 Sum_probs=176.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+++|+|+++|. +|+|.++ .
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC--------C
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC--------c
Confidence 3569999999887 22 3689999999999999999999999999999999999885 8998751 3
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++||+|+....+.+||.|++......... ..++++++++.++|.+..++.+ ..|||||||||+||++
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 599999998777889999988754111100 1246778899999987776644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC--CeEEEecChhhHHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 284 (712)
|+.+|++|||||||+|||..++..+.+.|+++++ .|.|||++|||. +++..+||+|++|++ |+++..|+++++.+
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999974 689999999995 688899999999986 88999999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-35 Score=332.69 Aligned_cols=207 Identities=20% Similarity=0.283 Sum_probs=174.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+++|+|+++|. +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 4578999999887 22 4688889999999999999999999999999999999886 89998765 3
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
.++|++|+......+||+|++.+....... . ....++++++.++|.+..++. +..|||||||||+|||+
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDALS----T--SSWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTTC----T--TSHHHHHTTTTTTGGGCTTSB-----GGGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhccc----h--hHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHH
Confidence 489999997766688999999875321110 1 124567888999998877765 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC--CeEEEecChhhHH
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 283 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~ 283 (712)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||. +++..+||+|++|++ |.....+++.+..
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999999976 689999999995 688899999999986 6666677765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=326.10 Aligned_cols=192 Identities=21% Similarity=0.285 Sum_probs=162.5
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCC
Q 005142 69 HNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL 143 (712)
Q Consensus 69 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l 143 (712)
+.+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. . ....++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCcEEEecccccccCCc
Confidence 45789999999999 789999999999999999999999886 7752 1 124589999997666667
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005142 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (712)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs 223 (712)
||+|++..... .... ....++++++.++|.+..++. +..|||||||||+||++|+.+|++|||||||+
T Consensus 429 tv~e~~~~~~~----~~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKIR----GQFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHCS----STTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHhh----cccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 99998764321 1111 124567889999998887774 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeC--CeEEEecChhhHHH
Q 005142 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (712)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 284 (712)
|||+.++..+++.|+++++ .|.|||++|||. +++..+||+|++|++ |+++..|+++++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999864 699999999995 688899999999996 99999999988765
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.4e-33 Score=331.78 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=166.9
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 005142 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (712)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~ 127 (712)
.+..|...|+++.| +++.+|+|+|+++++|++++|+||||||||||||+|+| |+| +|.+....
T Consensus 432 ~~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~- 494 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE- 494 (986)
T ss_dssp SSCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-
T ss_pred ccceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-
Confidence 34567778999988 45679999999999999999999999999999999995 222 34332111
Q ss_pred CcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHH
Q 005142 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSI 205 (712)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsI 205 (712)
..++|++|+. .+++.+||.|++.+ .. . .. +++++++++.+||. +..++.+ ..||||||||++|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHH
Confidence 2378999984 67889999999975 11 1 11 46688999999995 5666654 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-EecChhhHHH
Q 005142 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (712)
Q Consensus 206 A~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 284 (712)
|++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||+. .++.++||++++|++|+++ +.|+.++...
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999988 589999999995 6788999999999999997 7899887654
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.9e-33 Score=329.82 Aligned_cols=208 Identities=27% Similarity=0.315 Sum_probs=140.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNAF----LSGTILLNGHK 122 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~LaG~~~~~~~----~~G~I~i~G~~ 122 (712)
.+.+|+|||++|++||+++|+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 788887766411 14667777764
Q ss_pred cCC-CcCcEEEEecCCC-------------------CCCCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHHH
Q 005142 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIE 176 (712)
Q Consensus 123 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~ 176 (712)
... ....++||+|... .++.+||+||+.+...+........ ++..++ .+.++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHH
Confidence 321 1234455555432 2467899999987533221110000 001111 235888
Q ss_pred cCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005142 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (712)
Q Consensus 177 lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~--llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hq 253 (712)
+||.+. .|+.+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 46544 5799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 254 p~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
+ .. ...||++++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 6 34 5569999999 899999999998765
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-34 Score=329.48 Aligned_cols=192 Identities=26% Similarity=0.355 Sum_probs=156.5
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEecCC
Q 005142 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTKL 125 (712)
Q Consensus 55 ~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~i~G~~~~~ 125 (712)
+||+++|. +...+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+...
T Consensus 95 ~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYG----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEEC----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhh
Confidence 77777761 2225899999 99999999999999999999999999999886 7875 456654211
Q ss_pred -------CcCcEEEEecCCCCCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005142 126 -------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (712)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (712)
....+++++|.....+ ..||.|++... .. .++++++++.+||++..|+.+ .+|
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~-----~~L 229 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDREL-----HQL 229 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBG-----GGC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCCh-----hhC
Confidence 1234789988743322 13999998641 00 134778999999998887755 579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++||+ ..+..++|+|++|+++.
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999988899999999995 57888999999998653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6e-34 Score=325.32 Aligned_cols=194 Identities=25% Similarity=0.323 Sum_probs=156.5
Q ss_pred EEE-EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 005142 52 LTW-KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGH 121 (712)
Q Consensus 52 l~~-~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~i~G~ 121 (712)
.++ +||+++|. +...+|+||| .+++||+++|+||||||||||+|+|+|.++|+ +|++ .++|.
T Consensus 21 ~~~~~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYG----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEEC----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCc
Confidence 455 58888872 2225899999 99999999999999999999999999999886 6775 35665
Q ss_pred ecC-------CCcCcEEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005142 122 KTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (712)
Q Consensus 122 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (712)
+.. .....+++++|...+++. .|+.|++.... ..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~---- 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREI---- 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBG----
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCCh----
Confidence 421 112357899987543332 38999885321 0134778999999988777754
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||+. .++.++||+|++|++|
T Consensus 157 -~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 57999999999999999999999999999999999999999999999988899999999995 6888999999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=6e-33 Score=331.38 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=163.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~ 129 (712)
..|+++||++.|. +..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 4699999998872 12367999999999999999999999999999999999999886 999999863 24
Q ss_pred EEEEecCCCC----CCCCCHHHHHHHHhhhc------------CC-----------------------------------
Q 005142 130 AAYVTQDDNL----IGTLTVRETISYSARLR------------LP----------------------------------- 158 (712)
Q Consensus 130 ~~yv~Q~~~l----~~~lTV~E~l~~~~~l~------------~~----------------------------------- 158 (712)
++|++|+... ....|++|++.+..... +.
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997521 12458888876532100 00
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 005142 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (712)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~d~ 185 (712)
..+ + ....+++++++++.+||.+. .+.
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013467889999999742 355
Q ss_pred cccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE
Q 005142 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (712)
Q Consensus 186 ~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v 265 (712)
. +++|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++ +++.++||++
T Consensus 898 ~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 R-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp C-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred C-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 3 4579999999999999999999999999999999999999999888665 67999999995 6788899999
Q ss_pred EEEeCCeEEEecC
Q 005142 266 YLLSGGKTVYFGE 278 (712)
Q Consensus 266 ~lL~~G~iv~~G~ 278 (712)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=8.3e-32 Score=316.00 Aligned_cols=195 Identities=26% Similarity=0.335 Sum_probs=148.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKLS 126 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----------------------G~~~~~~~~~G~I~i~G~~~~~~ 126 (712)
+.+|+|||++|++||++||+||||||||||+++|. |... ..|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~----~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH----LDKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG----CSEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc----cCceeEeccccCCCC
Confidence 46899999999999999999999999999998764 2211 246788877653210
Q ss_pred ----------------------------------------------cCcEEEEecCCCCCC-------------------
Q 005142 127 ----------------------------------------------FGTAAYVTQDDNLIG------------------- 141 (712)
Q Consensus 127 ----------------------------------------------~~~~~yv~Q~~~l~~------------------- 141 (712)
....|++.|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 011244444433322
Q ss_pred -------------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHH
Q 005142 142 -------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIAL 207 (712)
Q Consensus 142 -------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~ 207 (712)
.+||.||+.+.... . ..+++.+.++.+||... .+. .+..|||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHH
Confidence 47999999875321 1 22445678888998642 344 45679999999999999
Q ss_pred HHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecC
Q 005142 208 EILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGE 278 (712)
Q Consensus 208 aL~~~P---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~ 278 (712)
||+.+| ++|||||||+|||+.++..+++.|++++++|+|||+++||+ .. .+.||+|++| ++|++++.|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999987 59999999999999999999999999988899999999996 34 4779999999 8999999999
Q ss_pred hhhHH
Q 005142 279 TSAAF 283 (712)
Q Consensus 279 ~~~~~ 283 (712)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98763
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-31 Score=303.00 Aligned_cols=188 Identities=26% Similarity=0.305 Sum_probs=145.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCC-----CcCc--
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL-----SFGT-- 129 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------i~G~~~~~-----~~~~-- 129 (712)
....|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+|. +.|..... ..+.
T Consensus 90 ~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (608)
T 3j16_B 90 NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165 (608)
T ss_dssp TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhh
Confidence 345778877 68999999999999999999999999999886 78872 33322100 0011
Q ss_pred EEEEecCCCC------CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005142 130 AAYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (712)
Q Consensus 130 ~~yv~Q~~~l------~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (712)
..+.+|.... -+..++.+++.... . +..++++++++.+||.+..|+.+ ..|||||||||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv 230 (608)
T 3j16_B 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRF 230 (608)
T ss_dssp CEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHH
T ss_pred hhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHH
Confidence 2233443211 11235666554321 0 11256888999999998888755 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEE
Q 005142 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 204 sIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++..++|+|++|++|..++
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999999988899999999995 68899999999999876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.9e-30 Score=295.94 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=138.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCC-------CcCcEEEEecC----
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-------SFGTAAYVTQD---- 136 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~i~G~~~~~-------~~~~~~yv~Q~---- 136 (712)
.++||++||+||||||||||+|+|+|.++|+ +|+| .++|++... ....+..+.|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 5699999999999999999999999999886 7888 566654310 11224444444
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEE
Q 005142 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216 (712)
Q Consensus 137 ~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~ll 216 (712)
+.++. .|++|++.... .+++++++++.+|+.+..|+.+ ..|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 22333 38888664221 1134678899999988887755 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeE
Q 005142 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 217 llDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~i 273 (712)
||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 99999999999999999999999976 99999999996 688999999999987643
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.1e-28 Score=294.40 Aligned_cols=200 Identities=26% Similarity=0.336 Sum_probs=152.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEecCC-----
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~LaG~~~~~~---~~~------G~I~i~G~~~~~----- 125 (712)
...|+|||+++++|++++|+||||||||||+ +.+.+...+.. ..+ +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444332210 112 335555433210
Q ss_pred -----------------------------------------CcCcEEEEecCCCCCCC----------------------
Q 005142 126 -----------------------------------------SFGTAAYVTQDDNLIGT---------------------- 142 (712)
Q Consensus 126 -----------------------------------------~~~~~~yv~Q~~~l~~~---------------------- 142 (712)
..+..|++.|+..+++.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01224788887766653
Q ss_pred ----------CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005142 143 ----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (712)
Q Consensus 143 ----------lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~ 212 (712)
+||.|++.|.... ....++.++|+.+||.... +| ..+..|||||||||.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 6788888875321 1234677899999996421 22 24568999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 213 P---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +. .+.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999998899999999996 44 4669999999 899999999999875
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=4e-29 Score=295.98 Aligned_cols=208 Identities=29% Similarity=0.330 Sum_probs=156.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C----------
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRLA-------S--N---------- 109 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-LaG~~~-------~--~---------- 109 (712)
..|+++|+++ .+|+|||++|++||++||+|+||||||||++. |+|.+. + +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588899863 26999999999999999999999999999996 765431 1 0
Q ss_pred ---CCcee-------EEEECCEecCCCcC----------------------------------------------cEEEE
Q 005142 110 ---AFLSG-------TILLNGHKTKLSFG----------------------------------------------TAAYV 133 (712)
Q Consensus 110 ---~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~yv 133 (712)
...+| .|.++|.++....+ ..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 11367 78899876421100 11222
Q ss_pred ecCCCCCC------------------------C--------CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005142 134 TQDDNLIG------------------------T--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (712)
Q Consensus 134 ~Q~~~l~~------------------------~--------lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (712)
..+..+++ . +|+.|++.|... ....+++.++|+.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCc
Confidence 21212222 2 345555444211 112346788999999976
Q ss_pred c-ccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005142 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (712)
Q Consensus 182 ~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~---P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~ 257 (712)
. .++ .+..|||||||||.||++|+.+ |+||||||||+|||+.+...+.+.|++++++|.|||+++|++ ++
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 4567999999999999999996 799999999999999999999999999998899999999995 55
Q ss_pred HHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 258 i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
+ +.||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999998753
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=3.1e-29 Score=297.26 Aligned_cols=208 Identities=25% Similarity=0.307 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~---------~~~~--~~~G--- 114 (712)
..|+++|++ ...|+|||++|++||+++|+|+||||||||+++|. |.+ .++. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357778774 23699999999999999999999999999999853 211 1211 1234
Q ss_pred ---EEEECCEecCCC------------------------cCcEEEEecCCCCC----------------------C----
Q 005142 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (712)
Q Consensus 115 ---~I~i~G~~~~~~------------------------~~~~~yv~Q~~~l~----------------------~---- 141 (712)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 578888764210 02246666642211 1
Q ss_pred ----------------------------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 005142 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (712)
Q Consensus 142 ----------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 192 (712)
.+||.|++.|.... .. ..++.++++.+||.. ..+. .+
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~-----~~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQ-----PA 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTC-----CG
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccC-----ch
Confidence 35788887764321 11 234567899999976 4555 44
Q ss_pred CCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE-
Q 005142 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL- 268 (712)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ .. .+.||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~-i~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH-HHhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999998899999999996 44 4789999999
Q ss_pred -----eCCeEEEecChhhHH
Q 005142 269 -----SGGKTVYFGETSAAF 283 (712)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (712)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999998764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.5e-28 Score=292.42 Aligned_cols=209 Identities=25% Similarity=0.331 Sum_probs=154.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCCCCCcee----------
Q 005142 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-S----RLASNAFLSG---------- 114 (712)
Q Consensus 50 ~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G----~~~~~~~~~G---------- 114 (712)
..|+++|++ ..+|+|||++|++|++++|+|+||||||||+++|. | .+.+.....|
T Consensus 646 ~~L~v~~l~----------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGAR----------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEEC----------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCc----------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 357888874 13699999999999999999999999999999853 2 2211100122
Q ss_pred ---EEEECCEecCC--C----------------------cCcEEEEecCCCC----------------------CC----
Q 005142 115 ---TILLNGHKTKL--S----------------------FGTAAYVTQDDNL----------------------IG---- 141 (712)
Q Consensus 115 ---~I~i~G~~~~~--~----------------------~~~~~yv~Q~~~l----------------------~~---- 141 (712)
.|.++|.++.. + .+..||++|...+ ++
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 35555544310 0 0123566554221 11
Q ss_pred ----------------------------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 005142 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (712)
Q Consensus 142 ----------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 192 (712)
.+||.|++.|.... .. ..++.++++.+||.. ..+. .+
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~-----~~ 861 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQ-----PA 861 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTC-----CG
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccC-----cc
Confidence 25777777764321 11 234568899999976 4444 44
Q ss_pred CCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE-
Q 005142 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL- 268 (712)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ ..+ +.||+|++|
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLG 939 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEC
Confidence 679999999999999999865 99999999999999999999999999988899999999996 444 789999999
Q ss_pred -----eCCeEEEecChhhHHH
Q 005142 269 -----SGGKTVYFGETSAAFE 284 (712)
Q Consensus 269 -----~~G~iv~~G~~~~~~~ 284 (712)
++|++++.|+++++..
T Consensus 940 p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 940 PEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSSTTSCSEEEEEECHHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHHh
Confidence 6899999999987653
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.3e-27 Score=262.24 Aligned_cols=204 Identities=23% Similarity=0.261 Sum_probs=146.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 113 (712)
..+|+++|+++.+| +++|+|||||||||||++|.++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 99999999999999999998766421 0126
Q ss_pred eEEEECCEecCC------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc-----------------------CCCCCC--
Q 005142 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLR-----------------------LPDKMP-- 162 (712)
Q Consensus 114 G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~-----------------------~~~~~~-- 162 (712)
|++.+||++... ....+++++|++.++.. +..+...|.-... +.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999997542 12348999999876543 5555544422110 000000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 005142 163 --------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (712)
Q Consensus 163 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------d~---~vg~-- 189 (712)
.......+.+.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001123445556666664310 00 1110
Q ss_pred ----cccCC-CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 005142 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 190 ----~~~~~-LSGGerqRvsIA~aL~~~P--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~ 262 (712)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||+| ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 689999999996 456899
Q ss_pred CeEEEE----eCCeEEEec
Q 005142 263 DRLYLL----SGGKTVYFG 277 (712)
Q Consensus 263 D~v~lL----~~G~iv~~G 277 (712)
|++++| .+|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-30 Score=288.38 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=147.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEecCCCcCcEEEEecCCC---CCCCCCHHH
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVRE 147 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 147 (712)
.++|+++++|++++|+||||||||||+|+|+|+..+. +| + |.+||.. .+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 4788999999999999999999999999999998774 89 9 9999832 356899999984 445679999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE- 220 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a--L~~~P~l----lllDE- 220 (712)
|+ |+....... . ..+++.++++.+||.+..+ +.+|||||||||+||++ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 1123456677788876554 35799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch-----HHHhcCCe-----EEEEe-CCeEEEecChhhH
Q 005142 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA 282 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~-----~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 282 (712)
||++||+. ...+.+.+++ .|.|+|+++|+... ++.+++|+ |++|. +|+++ .|++++.
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4444444443 47899999999651 56689999 99999 99999 8988765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=2.5e-24 Score=234.81 Aligned_cols=84 Identities=33% Similarity=0.467 Sum_probs=77.2
Q ss_pred cccCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 005142 190 WHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (712)
Q Consensus 190 ~~~~~LSGGerqRvsIA~aL~------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D 263 (712)
..+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|++++++|.|||++||++ + ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCC
Confidence 356789999999999999999 79999999999999999999999999999988899999999996 3 478899
Q ss_pred eEEEEeCCeEEE
Q 005142 264 RLYLLSGGKTVY 275 (712)
Q Consensus 264 ~v~lL~~G~iv~ 275 (712)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=1.3e-27 Score=240.77 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=100.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--ecCCCcCcEEEEecCCCCCCCCCH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--KTKLSFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~--~~~~~~~~~~yv~Q~~~l~~~lTV 145 (712)
.+.+|+|| ++||+++|+||||||||||+++|+|+ +|+ +|+|..... +.....+.++||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46789996 89999999999999999999999999 774 787732111 1112235699999975
Q ss_pred HHHH-HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005142 146 RETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (712)
Q Consensus 146 ~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDE 220 (712)
+||+ .+.. .+. .... .++++++++. + + ||||||+|||+|+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 111 0000 1234455443 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 899999999988 6789999 999963
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=7.1e-24 Score=227.26 Aligned_cols=89 Identities=28% Similarity=0.252 Sum_probs=73.8
Q ss_pred ccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeE-
Q 005142 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v- 265 (712)
.+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|++++ +|.|||++||++ ++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 35689999999999999997 5789999999999999999999999999985 589999999995 467899987
Q ss_pred -EEEeCCeE-EEecChhhH
Q 005142 266 -YLLSGGKT-VYFGETSAA 282 (712)
Q Consensus 266 -~lL~~G~i-v~~G~~~~~ 282 (712)
++|.+|.. +.....+++
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 77887754 444454443
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=1.6e-28 Score=260.37 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=147.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 005142 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (712)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~ 81 (712)
++.+|..|+.++++.++.... . ..+ |.. ....|+++||++.+ . +.+|+|+|+++++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~---~-~~~-----~~~---------~~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT---G-EGS-----WKS---------ILTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC---S-SCC-----THH---------HHHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC---C-CCc-----ccc---------cCCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 578899999999986543211 0 000 110 01126677888776 2 5699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH-HHHHHhhhcCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E-~l~~~~~l~~~~~ 160 (712)
|++++|+||||||||||+++|+|++ +|+| ++|++|++.++.. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999987 4777 3467888888775 8887 7765321
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005142 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (712)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l 240 (712)
.+. .+.+.++.+ |.+..| | ..|||||||| ||+|+.+|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 345566654 555444 2 4799999999 999999999999 99999999888862
Q ss_pred HhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005142 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (712)
Q Consensus 241 ~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 288 (712)
.+|++. ..+.+|+| +|++|++++.|+.+++..+|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 178864 46889999 9999999999999988666654
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=1.5e-24 Score=211.31 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=100.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCC-CCCCHHHHHHHH
Q 005142 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRETISYS 152 (712)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 152 (712)
|||+++++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998642 11111111 1125666653210 0001111111
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 005142 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (712)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~---- 228 (712)
.... .....|.....|. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~-~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVS-KRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHH-HHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHH-HHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 1223354433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 005142 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (712)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i 258 (712)
....+.+.|++++++|.|+|+++|++ +++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~ 162 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEV 162 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHh
Confidence 55889999999887799999999996 344
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=6.6e-26 Score=249.85 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=136.3
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 005142 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~ 128 (712)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999885 899999987542 1
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH--HHHHHHHH
Q 005142 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (712)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG--erqRvsIA 206 (712)
.+|++|++ .++.+|+.|++.+... +..+++.++.+++.+. +.. +. |||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5778899998755421 1246788899998764 222 22 8999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCch-HHHhcCCeE
Q 005142 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRL 265 (712)
Q Consensus 207 ~aL~~----------~P~llllDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvI~~~Hqp~~-~i~~~~D~v 265 (712)
++|+. +|+++++||||+|||+.++.++.+.|+++. +.| .+|++++|+... .+.+++|++
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999984 332 678899998642 255555555
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=3.1e-23 Score=203.73 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=101.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
.++|+||||||||||+++|+|.+.. ...|... .... ...+.++|++|+. ++.+++ + +.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh------
Confidence 5899999999999999999998742 1233211 1111 2235689999975 222332 1 111
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 005142 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVT 234 (712)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a-----L~~~P~llllDE--PTsgLD~~~~~~i~ 234 (712)
+... +..++ .++..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 63 ----------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 63 ----------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp ----------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred ----------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0000 01122 2455799999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHhCCCEEEEEeC--CCchHHHhcCCeEEEEeCCeEEE
Q 005142 235 QTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (712)
Q Consensus 235 ~~L~~l~~~g~tvI~~~H--qp~~~i~~~~D~v~lL~~G~iv~ 275 (712)
+.|++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4678999997 335677788887 4566654
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=1.3e-25 Score=225.28 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=119.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CCCcCcEEEEecCCCCCCCCCHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLSFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
...+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+. ....+.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 4567888 68999999999999999999999999998852 233332222221 11235689999998888888888
Q ss_pred HHHHHHhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEE
Q 005142 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (712)
Q Consensus 147 E~l~~~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~lll 217 (712)
|++........ ....++++.++++++. ++.+|+.+..+. +++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77643211100 0012344444555554 444455444443 234566 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 218 lDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
|||||+|+ |+..+..+.+.++++++ .|.|+|+++|++ +++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 68999999999985
No 74
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=3.4e-21 Score=228.26 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005142 165 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (712)
Q Consensus 165 ~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P--~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (712)
+..++++ .+..+||.+. .++. +..|||||||||.||++|..+| .+|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~-----~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRS-----TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCB-----GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCC-----cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445565 6888999764 5654 4579999999999999999999 5999999999999999999999999998
Q ss_pred hCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 242 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 242 ~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
+.|.|||+++|++ . +.+.+|+|++| ++|++++.|++++..
T Consensus 429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8899999999996 3 56789999999 799999999988753
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=1.1e-22 Score=215.95 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=132.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEecCCC-C
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-L 139 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 139 (712)
++++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999998875 79999999764210 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEE
Q 005142 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (712)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~--lll 217 (712)
++.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 88899999998864211 00 12455677776655544 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc--------hHHHhcCCeEEEEeCCeE
Q 005142 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~--------~~i~~~~D~v~lL~~G~i 273 (712)
|| ||+|||+.+. ++++.+ .|.|+|++||... +.+.+..+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999998754 345553 5899999999432 233455677888887754
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=1.7e-22 Score=211.28 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=96.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
.++|+||||||||||+|+|+|...+. +|+|.++|++... ..+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 48999999999999999999998885 8999999986532 24679999999999999999999998764331 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005142 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (712)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (712)
.. +.+.+.++ .+..+.. ..+||||||||++|||+++. ++++|||+.|||+.. .+.++.+.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 22333332 2223332 34699999999999999876 999999999999987 56666676
Q ss_pred hCCCEEEEEeCCC
Q 005142 242 RDGRTVIASIHQP 254 (712)
Q Consensus 242 ~~g~tvI~~~Hqp 254 (712)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999973
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=5e-20 Score=199.83 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred CcccC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 005142 189 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (712)
Q Consensus 189 ~~~~~-~LSGGerqRvsIA~aL~---------~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i 258 (712)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 33455 69999999999999999 8999999999999999999999999998874 699999994 3 2
Q ss_pred HhcCCeEEEEeCCeEEEecChhhH
Q 005142 259 FELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 259 ~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=7.1e-20 Score=197.58 Aligned_cols=80 Identities=30% Similarity=0.349 Sum_probs=71.4
Q ss_pred ccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCe
Q 005142 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (712)
Q Consensus 191 ~~~~LSGGerq------RvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~ 264 (712)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 46789999999 66777888889999999999999999999999999999987789999999994 47899999
Q ss_pred EEEEe--CCe
Q 005142 265 LYLLS--GGK 272 (712)
Q Consensus 265 v~lL~--~G~ 272 (712)
++.|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99996 454
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=4.6e-23 Score=229.52 Aligned_cols=189 Identities=16% Similarity=0.110 Sum_probs=149.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecCC--
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~---~~~~-- 125 (712)
.++.+|+++.+. ....+|+++ +.+.+||+++|+||||||||||+++|+|..+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 477788887762 236799999 999999999999999999999999999998875 899999998 3211
Q ss_pred --------CcCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005142 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (712)
Q Consensus 126 --------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (712)
..+.++||+|+ +.+++.+||.+|+.+.+...... .+.+ ....| .+..+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld------~l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD------SLTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE------CHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH------hHHHHH
Confidence 13568999995 55677889999998865432100 0000 01112 134699
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCchHHHhcCCeEEE
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvI~~~Hqp~~~i~~~~D~v~l 267 (712)
+|| ||++|| +.+|++ |+|||+.+...+.+.++++.+ + |+ ||++++||.. ..++|++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999876 3 64 9999999975 578999999
Q ss_pred EeCCeEEEecChhhH
Q 005142 268 LSGGKTVYFGETSAA 282 (712)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (712)
|.+|+++..|+..+.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999887643
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-21 Score=212.37 Aligned_cols=171 Identities=17% Similarity=0.154 Sum_probs=132.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----------CcCcEEEEecCCC-CC
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDN-LI 140 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~-l~ 140 (712)
+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998775 7999999976421 0235899999988 88
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEE
Q 005142 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~--llll 218 (712)
+.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||+.||++|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 8899999999864211 00 12455677766655543 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc--------hHHHhcCCeEEEEeCCeE
Q 005142 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~--------~~i~~~~D~v~lL~~G~i 273 (712)
| ||+|||+.+.. +++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999988653 44543 5899999999421 233455677777777753
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=1e-21 Score=211.15 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=105.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-C--CcCcEEEEecCCCCCCCCCHHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L--SFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-~--~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|.++|.+.- . ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999885 899999986411 0 011222221
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.++.+.|+.+...+.|+|+++|+++ ..+.+|++++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777654458999999975 678899999998775
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=5.9e-24 Score=215.38 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=98.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------CcCcEEEEecCCCCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLIGT 142 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~ 142 (712)
+.-|+|||+++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ..+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 44699999999999999999999999999999999987 3 77888 754211 13468899998766554
Q ss_pred CCH-HHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH-----HHHHhhCCCE
Q 005142 143 LTV-RETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRPRL 215 (712)
Q Consensus 143 lTV-~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI-----A~aL~~~P~l 215 (712)
++. .+++.+. .+... ...+. ..++++++...+ ..+. ..+|||||||++| +++++.+|++
T Consensus 83 ~~~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHHTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hhhccchhhhh-hcccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 321 1111110 00000 01111 235566654322 1111 3689999999999 8899999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005142 216 LFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (712)
Q Consensus 216 lllDEPTsgLD~~~~~~i~~~L~~l~~ 242 (712)
++|||||+++|..+...+.+.|.++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1e-19 Score=217.40 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=125.3
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCH-----HHHHHHHHH
Q 005142 98 LLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW-----SEKRTLVER 172 (712)
Q Consensus 98 LL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~-----~~~~~~v~~ 172 (712)
...|..+++.+. .|+|.++|+++.. +..+||.|++.|...+.++..... .+......+
T Consensus 384 C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 334555566664 7999999987532 244689999888655433221110 011123456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 005142 173 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249 (712)
Q Consensus 173 ~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~--llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~ 249 (712)
.|..+||.+. .++. +..|||||||||.||++|+.+|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888999754 4554 45799999999999999999887 99999999999999999999999999888999999
Q ss_pred EeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 005142 250 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (712)
Q Consensus 250 ~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 284 (712)
++||+ +. ...+|+|++| ++|++++.|+++++.+
T Consensus 522 VtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 522 VEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp ECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99995 44 4569999999 8999999999988653
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=3.2e-19 Score=203.05 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.3
Q ss_pred ccCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE
Q 005142 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (712)
Q Consensus 191 ~~~~L-SGGerqRvsIA~aL~~~P--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~l 267 (712)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||+|. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999963 5567999999
Q ss_pred EeCC
Q 005142 268 LSGG 271 (712)
Q Consensus 268 L~~G 271 (712)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=2e-20 Score=197.50 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=118.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecCC--CcCcEEEEecCCCCCCCCCH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 145 (712)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999988664 46 56543321110 0111222222211 122
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIA~aL~~~P~llllDEPTs- 223 (712)
.+++.... + +.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333221 1 1222333444444322221 111 123588998 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEeCCCc-h--------------------HHHhcCCeEEEEeCCeE
Q 005142 224 --G---LDS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS-S--------------------EVFELFDRLYLLSGGKT 273 (712)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~-~--------------------~i~~~~D~v~lL~~G~i 273 (712)
+ +|. .....+++.|+++++ .|.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 667889999999986 4999999999951 3 57789999999998874
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=2.6e-19 Score=204.24 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=119.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++.. +
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~~---~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNAY---S- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHHH---T-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHHH---H-
Confidence 5689999999999999999999999999987652 32 12456666641 12333321 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~-----~~ 230 (712)
. +.. +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 331 -~--g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 331 -W--GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp -T--SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred -c--CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1 112 112 234565554444 45679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc---------hHHHhcCCeEEEEeCCe
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hqp~---------~~i~~~~D~v~lL~~G~ 272 (712)
..+.++++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999889999999999961 45677899999999887
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=1.8e-21 Score=207.67 Aligned_cols=123 Identities=18% Similarity=0.110 Sum_probs=98.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (712)
+++|++++|+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 7999999999999999999999999998763 332 458999999999988 99999864321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
...+.....+.+.+.|+.++ .+..+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222333456777888887 4444443 347999999999999999999999999999999986
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.77 E-value=1.6e-20 Score=193.23 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=109.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHH
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
+.+.+|+|+|+++++|++++|+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 222233 1235689999995 67789999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005142 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD 226 (712)
|++.+...... ...+.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99887543211 0101111123344455443 333344 345799999999988 57888999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-cCCeEEEEeCCeEEEecChhhHHHHH
Q 005142 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFEFF 286 (712)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~-~~D~v~lL~~G~iv~~G~~~~~~~~f 286 (712)
.. +.++ .+.+|++++|+.. .+.+ +++++ .+|+ +.+++.+.+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 53 2222 3789999999743 3433 34434 5564 455555433
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=8.1e-20 Score=221.55 Aligned_cols=172 Identities=19% Similarity=0.123 Sum_probs=120.2
Q ss_pred EEEEEe-----EEEEEEccCCcccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005142 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (712)
Q Consensus 51 ~l~~~~-----l~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i 118 (712)
.|+++| |++.+. +.+.+++|+++.+++ |++++|+|||||||||||++| |+..+-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 489999 887662 236799999999987 999999999999999999999 876420
Q ss_pred CCEecCCCcCcEE-EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005142 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (712)
Q Consensus 119 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (712)
.++| ||||+.. .+||.|++.. + +|+.+..+. ....+|+
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHH
Confidence 2244 9999753 4455554421 1 122211111 1234677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCchHHHhcCCeEEEEeCCeEE-
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv- 274 (712)
+++ ++++|++++++|+++||||||+|+|+... ..+...|+.++++ |.++|++||++ +.+...+|++.++ +|++.
T Consensus 855 em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 666 49999999999999999999999999985 5578899999876 99999999995 5677789998886 58887
Q ss_pred -EecChh
Q 005142 275 -YFGETS 280 (712)
Q Consensus 275 -~~G~~~ 280 (712)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=4.4e-18 Score=202.23 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHhhhcCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005142 141 GTLTVRETISYSARLRLPDK---MP---WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P 213 (712)
..+||.|++.|...+.++.. .. .++..+++ +.|+.+||... .|+.+ ..|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35899999999776653320 00 02344555 45889999754 56644 579999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 005142 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (712)
Q Consensus 214 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 283 (712)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ .+.+|+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999996 44 5689999999 799999999988753
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=1.2e-18 Score=208.87 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=118.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEe
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHK 122 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~i~G~~ 122 (712)
.+.+++...-+-....+.+.+++|+++.+++|++++|+||||||||||||+++ |...|. ++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~------ 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE------ 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc------
Confidence 35666554322111113457999999999999999999999999999999993 432221 1100
Q ss_pred cCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 123 ~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
++. -+. ++..+|+.+. ..+++|+|++++
T Consensus 702 -------~~~---~d~----------------------------------i~~~ig~~d~--------l~~~lStf~~e~ 729 (934)
T 3thx_A 702 -------VSI---VDC----------------------------------ILARVGAGDS--------QLKGVSTFMAEM 729 (934)
T ss_dssp -------EEC---CSE----------------------------------EEEECC-----------------CHHHHHH
T ss_pred -------chH---HHH----------------------------------HHHhcCchhh--------HHHhHhhhHHHH
Confidence 010 000 1111222211 123688888888
Q ss_pred HHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 203 VSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 203 vsIA~aL--~~~P~llllDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
..+|+++ +++|+++||||||+|||+.....+ ..+++.+++ .|.|+|++||++ ++.+++|++..+.+|++.+.++
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEec
Confidence 8888888 999999999999999999999888 667788876 599999999994 5778999999999999998887
Q ss_pred hhhH
Q 005142 279 TSAA 282 (712)
Q Consensus 279 ~~~~ 282 (712)
.+++
T Consensus 808 ~~~l 811 (934)
T 3thx_A 808 EETL 811 (934)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 6654
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=6.7e-18 Score=201.32 Aligned_cols=137 Identities=25% Similarity=0.347 Sum_probs=110.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005142 140 IGTLTVRETISYSARLRLPDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (712)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIA~aL~~~ 212 (712)
+..+||.|.+.|...+.++.... .++..+++ +.|..+||... .|+.+ ..|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhC
Confidence 44589999999965543321000 02344555 35788999754 56544 57999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 005142 213 --PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (712)
Q Consensus 213 --P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 284 (712)
|++|+|||||+|||+.....+++.|++|++.|.|||+++|++ .. .+.+|+|++| ++|++++.|+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 589999999999999999999999999998999999999996 44 5689999999 7999999999987654
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=1e-19 Score=196.83 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=137.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~----- 125 (712)
.++.+|+++.+. ....+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.|.+.|++...
T Consensus 45 ~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred CeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHH
Confidence 477888888773 246799999 999999999999999999999999999999876 8999999864110
Q ss_pred -------CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005142 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (712)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (712)
..+.+.++.|.+. +..+.+.-... .....+.....+ .|..+--..+..+|+|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g 175 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARA 175 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHH
Confidence 1234677777542 23332221100 000111111111 1111000134579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 199 erqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||+++.+.+|
T Consensus 176 ~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG 242 (347)
T 2obl_A 176 A-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDG 242 (347)
T ss_dssp H-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSE
T ss_pred H-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCc
Confidence 9 899999 688877 999999999999999999874 477 9999999975 5679999999999
Q ss_pred eEEEecChhhH
Q 005142 272 KTVYFGETSAA 282 (712)
Q Consensus 272 ~iv~~G~~~~~ 282 (712)
+++..|+.++.
T Consensus 243 ~Ivl~~~l~~~ 253 (347)
T 2obl_A 243 HIVLTRELAEE 253 (347)
T ss_dssp EEEBCHHHHTT
T ss_pred EEEEeCCHHHc
Confidence 99999887654
No 94
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=7.6e-18 Score=160.31 Aligned_cols=83 Identities=28% Similarity=0.314 Sum_probs=74.0
Q ss_pred CcccCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcC
Q 005142 189 NWHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (712)
Q Consensus 189 ~~~~~~LSGGerqRvsIA------~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~ 262 (712)
+..+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999886 899999999999999999999999999999999977789999999996 467899
Q ss_pred CeEEEE--eCCeE
Q 005142 263 DRLYLL--SGGKT 273 (712)
Q Consensus 263 D~v~lL--~~G~i 273 (712)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=2.1e-19 Score=183.49 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=103.4
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEecCC----CcCcEEEEecCCCCCCCCC
Q 005142 72 LEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLT 144 (712)
Q Consensus 72 L~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lT 144 (712)
|+++ .+.+++|++++|+||||||||||+++|+ |...++ +|.+.+++..... ..+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2479999999999999999999999999 653333 5667776653211 1123455555543333333
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsg 224 (712)
+.++....... ....... .....+-++..+...+..-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~~----------~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PSEEKFV------------------LEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------cccccee------------------ccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 33322111000 0000000 0011234454444444444689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH---------HhcC-CeEEEEe
Q 005142 225 LD-----SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV---------FELF-DRLYLLS 269 (712)
Q Consensus 225 LD-----~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i---------~~~~-D~v~lL~ 269 (712)
|| ...+..+.++++.+++.|+|||+++|+.. ++ ..+| |++++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 97 67777799999999888999999999964 45 5788 9999995
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=2e-19 Score=205.12 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=117.0
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEecCC----CcCcEEEEecCCCCC
Q 005142 68 THNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLI 140 (712)
Q Consensus 68 ~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--LaG~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 140 (712)
...+|++||+ .+++|++++|+||||||||||+++ ++|..+|+ +|.|+++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4679999999 999999999999999999999999 78998765 8999999976321 124578888874321
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005142 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDE 220 (712)
+ ++.+ ..... .. ...++++.++|.+..+. .++.|||| +|+++++||
T Consensus 101 ~------~l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 G------KLFI---LDASP--DP-----EGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp T------SEEE---EECCC--CS-----SCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEEC
T ss_pred C------cEEE---EecCc--cc-----chhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECC
Confidence 1 1100 00000 00 00111112222222222 12235554 588999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH--------HHhcCCeEEEEeCCe
Q 005142 221 PTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSGGK 272 (712)
Q Consensus 221 PTs-----gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~--------i~~~~D~v~lL~~G~ 272 (712)
||+ +||+..+..+.++++++++.|.|||+++|++... +..+||+|++|++|+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998 5699999999999999988899999999997532 345699999999843
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=6.1e-19 Score=177.77 Aligned_cols=154 Identities=20% Similarity=0.165 Sum_probs=94.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (712)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++... ...+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~- 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIYV- 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEEE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEEE-
Confidence 5799999999999999999999999999543310 1134555555321 000112233332222221 22222211
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 005142 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (712)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIA~aL~~-------~P~llllDEPTsg 224 (712)
....++++ ++++..+.+++. +|+++++||||++
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 97 ---------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ---------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ---------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11233333 333556666665 9999999999999
Q ss_pred CCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCc---hHHHhcCCeEEEEeCCe
Q 005142 225 LDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (712)
Q Consensus 225 LD~~~------------~~~i~~~L~~l~~-~g~tvI~~~Hqp~---~~i~~~~D~v~lL~~G~ 272 (712)
+|+.. ...+++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99842 2378888888865 5999999999532 23778899999998753
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=1.5e-18 Score=180.58 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=98.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHH
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
.+|+++| +++|++++|+||||||||||+++|+|.+++. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 9999999999999999999999999998762 1799999886542 233321100
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
. + . ..+|+.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v--~----q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V--N----Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E--E----E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e--e----H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 0 0 0123321 122 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
...++ +. ++.|.+|++++|++. +.+.+|+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66544 33 357999999999964 5788999988854
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.68 E-value=5.8e-20 Score=183.80 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=113.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCC--CCCCHHHHHHHHhhhc
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~l~ 156 (712)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997642 478999998776 56899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe----rqRvsIA~aL~~~P~llllDEPTsg-------L 225 (712)
.+ .....+++.+.++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 111234566777888776655443 34689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEeCCC
Q 005142 226 DSAAAFFVTQTLRCL-SRDGRTVIASIHQP 254 (712)
Q Consensus 226 D~~~~~~i~~~L~~l-~~~g~tvI~~~Hqp 254 (712)
|+.....+.+.+++. .++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999876 45799999999974
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.68 E-value=3.1e-17 Score=196.28 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=104.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
.+.|++|||+.+++|++++|+||||||||||||++++..-.. ..|. ... ...+.++.-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vp---a~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVP---AEEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBS---SSEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------ccc---chhhhhhHHHHHHHhCChHH
Confidence 467999999999999999999999999999999998643110 0110 000 00111111111222111111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
.... ....+|+|++|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ----------------------------------~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 ----------------------------------NIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ----------------------------------HHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 1111 224589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEE-EeCCeEEE
Q 005142 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVY 275 (712)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~l-L~~G~iv~ 275 (712)
.....+. ..++.+++ .|.|+|++||++ ++.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 9999998 77788865 699999999995 45666665421 34444443
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=7.6e-19 Score=186.50 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=86.5
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCC--CcCcEE
Q 005142 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (712)
Q Consensus 55 ~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 131 (712)
.||++.+ +.+.+++++++.+ +|+||||+|||||++.|.|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3666666 4577999999988 99999999999999999997 5554 78 8888865321 234578
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005142 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
+++|++.+...+||.|+..++.... . .+..+..++.+. +..+. +.+++|||||||+.+|++++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~--~---~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAIN--C---RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcC--c---HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 9999988888899999988764321 0 000011122111 11223 34579999999999888875
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCc
Q 005142 212 RPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (712)
Q Consensus 212 ~P~llllDEPTs-gLD~~~~~~i~~~L~~l~~~-g~tvI~~~Hqp~ 255 (712)
++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 4999873 566666553 788999999964
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=8.6e-18 Score=198.23 Aligned_cols=145 Identities=22% Similarity=0.171 Sum_probs=105.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
++.+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--hhccceeeHHH---hhccCCHH
Confidence 36799999999 99999999999999999999999763 32 45432 1 11234667665 45555555
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 005142 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL--~~~P~llllDEP--- 221 (712)
|++. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 14789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 222 TsgLD~~~~-~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
|++||..+. ..+++.|++ .|.|+|++||++ +..+++ .-.+.++++...
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEE
Confidence 999998875 578887766 489999999994 445555 222344555443
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=9.2e-18 Score=178.29 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=107.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEecCCCCCCCCCHHHHH
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
+|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... ...++||+|++.++|.+|++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999875 89999999874211 13589999999888989999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
.++..... . ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~-d-----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY-D-----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC-S-----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC-C-----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 86532100 0 001222333222211 2455669999999999999995544 566666
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCC
Q 005142 230 AFFVTQTLRCLSR-DGRTVIASIHQP 254 (712)
Q Consensus 230 ~~~i~~~L~~l~~-~g~tvI~~~Hqp 254 (712)
..++++.++++.+ .|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6677777888765 489999999985
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.65 E-value=3.6e-18 Score=185.00 Aligned_cols=166 Identities=21% Similarity=0.169 Sum_probs=101.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEecCCCcCcEEEEecCCCCCCCCCH
Q 005142 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (712)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 145 (712)
.|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |+++++... ..+++++++|...+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HH
Confidence 45665 6899999999999999999999999999986 3320 01267 777775421 11334455555433322 33
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-------hCCCEEEE
Q 005142 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLFL 218 (712)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~-------~~P~llll 218 (712)
.||+.+... --|++++|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 333222100 01456667777777776 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 219 DEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 219 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
||||+++|+.. ..++++.|+++++ .|.|||+++|.. ......++.......|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 99999999862 4567777777765 589999999985 34444455566666676654443
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.65 E-value=1.8e-17 Score=196.53 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=108.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
++.+++|+|+. ++|++++|+||||||||||||+|+|..... ..| .........++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 46799999999 999999999999999999999999974221 012 111111123455544 455555555
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
++... + ..+|+|++ ++..+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54211 1 12566665 45555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecC
Q 005142 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
.....+ ...++.+++ .|.++|++||++ ++.+++|++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 888776 678888887 599999999996 3567899887788888776543
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=5e-17 Score=163.53 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=108.5
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 69 HNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 69 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
...|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.+.+. +. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~--------------~~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT--------------EE------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES--------------SS------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc--------------cc------CHHH
Confidence 456888885 89999999999999999999999999876542 455544322 11 1111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGL 225 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~--llllDEPTsgL 225 (712)
......................++.....++ ... .....|.+|.++...+.....+|+ ++++||||+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 1111001100000000000000000000000 000 112359999998888888788999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc-------hHHHhcCCeEEEEeCC
Q 005142 226 --DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (712)
Q Consensus 226 --D~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~-------~~i~~~~D~v~lL~~G 271 (712)
|+.....+++.|+++++ .|.|||+++|+.. ..+.++||++++|++.
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999999999975 6999999999962 3478899999999854
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.62 E-value=1.9e-18 Score=200.17 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=116.8
Q ss_pred EEEEEeEEEEEEccCCcccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
.+.++||+..+.. ..+.+|+.+ ++.++. +||+|||||||||||++|+|+..|. .+|.|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4778888887732 123344333 355543 9999999999999999999998662 289999999
Q ss_pred EecC--------CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005142 121 HKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (712)
Q Consensus 121 ~~~~--------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (712)
.+.. ...+.++|++|+..+++.+||+|++.++........ .++. +
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~-------- 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H-------- 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S--------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h--------
Confidence 8631 123568999999999999999999987643210000 0111 0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCCch---H---H
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---V 258 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllDEP------TsgLD~~~~~~i~~~L~~l~~--~g~tvI~~~Hqp~~---~---i 258 (712)
+++.++.+...+|+++++||| |+|||+.....+.+.++++.+ .+.++++++|+... + +
T Consensus 135 --------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 135 --------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp --------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred --------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 111112222348999999999 999999999999999999754 36788899998541 1 2
Q ss_pred Hhc-----CCeEEEEeCCeEEEecChhhHHHH
Q 005142 259 FEL-----FDRLYLLSGGKTVYFGETSAAFEF 285 (712)
Q Consensus 259 ~~~-----~D~v~lL~~G~iv~~G~~~~~~~~ 285 (712)
.+. ...|.++.++..+..|+.+++.+.
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 222 245788899988888876554443
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=9.9e-16 Score=160.26 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=105.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 157 (712)
.+++|++++|+||||||||||++.|++... .|++. .|.+.. ....+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 488999999999999999999999998553 35442 344321 12457888776532 01222211 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 005142 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (712)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTs--gLD~~~~---~~ 232 (712)
.... ...+++++.+++.+..+. .+..+|+||+|++ ++++.+|+++++||||+ ++|.... ..
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235567788887766544 3467999998875 68889999999999999 9998544 88
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC
Q 005142 233 VTQTLRCLSR-DGRTVIASIHQP 254 (712)
Q Consensus 233 i~~~L~~l~~-~g~tvI~~~Hqp 254 (712)
+++.|+++++ .|.|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999874 699999999995
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.61 E-value=2.3e-18 Score=170.59 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=103.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (712)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.+||++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999986 4 68 888886542 2346789999975 111 1111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 005142 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (712)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv-sIA~---aL~~~P~llllDE--PTsgLD~~~~~ 231 (712)
+.++ ..+..+|. +...+|+|||+++ ++++ |+..+|+++|+|| |+..+|...
T Consensus 67 -------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~-- 124 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF-- 124 (189)
T ss_dssp -------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH--
T ss_pred -------------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH--
Confidence 1111 11224443 3456999999988 4444 5789999999999 898898865
Q ss_pred HHHHHHHHHHhCCCEEEE--E--eCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 232 FVTQTLRCLSRDGRTVIA--S--IHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~--~--~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
++.|+++.+...++|+ + +|+.+ ..+.|+|..+.+|+++.-
T Consensus 125 --~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 125 --IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp --HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred --HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 4445554444555554 2 38753 356778877888888764
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.59 E-value=2.5e-16 Score=170.77 Aligned_cols=127 Identities=22% Similarity=0.261 Sum_probs=88.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999998763 146665433332211 1122344443221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~ 236 (712)
++-.+ +||++|..+|++|++|||| |..+ .+.
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 11111 8999999999999999999 6555 444
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCC
Q 005142 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (712)
Q Consensus 237 L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G 271 (712)
+.+++..|+||++|+|+.+ . .+.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 4455678999999999974 3 4889999998654
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=5.5e-17 Score=179.22 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=96.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 130 (712)
.|.++||++.+ +.+.+++|+|+.| +|+|+||||||||+|+|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 48888988876 3567999999998 99999999999999999998764211 2222222211 1112457
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005142 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (712)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~ 210 (712)
++++|++.+++.+||.||+.++.... ..+....+.+.++ ..++.+++||+.||++++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 89999988888899999988764321 0010111112221 125667788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005142 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (712)
Q Consensus 211 ~~P~---llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hq 253 (712)
.+|+ ++++|||| .|||+... +.++.+.. +.+||+++|.
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 9999 99999999 69998873 44555543 7888888876
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=2.9e-15 Score=148.62 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=98.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecCCC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~i~G~~~~~~ 126 (712)
|+++||++.+. ..+|++ +.+++|..++|+|+||||||||+|.|+|.. .+ ..|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-ec
Confidence 78899999883 357888 889999999999999999999999999986 33 356554322100 00
Q ss_pred cCcEEEEecCCCC----CCCCC---HHHHHHHHhhh-c----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005142 127 FGTAAYVTQDDNL----IGTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188 (712)
Q Consensus 127 ~~~~~yv~Q~~~l----~~~lT---V~E~l~~~~~l-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg 188 (712)
...-.+ +.+.+ .+.-. .+..+...... + .....+ .....+.+.++..++... .++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~---~v~ 144 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVL---VLL 144 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEE---EEE
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeE---EEE
Confidence 001111 11111 00000 11122221110 0 001111 122334556666666532 122
Q ss_pred CcccCCCChHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 005142 189 NWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (712)
Q Consensus 189 ~~~~~~LSGGerqR-vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~t 246 (712)
+ ....+|+||||| +..+++++.+|.++++|||||++|.....++.+.|.++.++|.|
T Consensus 145 n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 T-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp E-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred e-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2 344689999999 89999999999999999999999999999999999998766544
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.51 E-value=4.6e-14 Score=137.64 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.5
Q ss_pred ccCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEE
Q 005142 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 191 ~~~~LSGGerqRvsIA~aL~~----~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
.+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 346799999999999999974 4699999999999999999999999999865 47899999994 5678999999
Q ss_pred EEe--CCe
Q 005142 267 LLS--GGK 272 (712)
Q Consensus 267 lL~--~G~ 272 (712)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 764 564
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=7.2e-16 Score=156.16 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=99.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcEEEEecCCCCCCCCCH----HHHHH
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RETIS 150 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~E~l~ 150 (712)
.-..++|++++|+||||||||||+++|+|..+|+ ...|+|.+++.+... ..+.++|++|++..|+.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999998752 258999998876432 23457899997654444333 12111
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005142 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~ 230 (712)
+. |+. .+.| +++ ..+++..++++||| ||+.++
T Consensus 89 ~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 10 110 0112 222 34555668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 287 (712)
..+.+.+. ++.||++++|++ +++.+ |+ +.+| .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99999876 589999999996 34444 32 6677 567777665443
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.49 E-value=2.5e-13 Score=135.60 Aligned_cols=154 Identities=21% Similarity=0.164 Sum_probs=100.4
Q ss_pred ceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 70 NVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 70 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
..|+++. +-+++|++++|+||||||||||++.|++ .. .+. +.|+..++.+ +..+-
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~--------------v~~i~~~~~~----~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKK--------------VAYVDTEGGF----SPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSE--------------EEEEESSCCC----CHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCc--------------EEEEECCCCC----CHHHH
Confidence 4566666 4799999999999999999999999998 22 122 2333333211 22111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSGL 225 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe--rqRvsIA~aL~~~-P~llllDEPTsgL 225 (712)
....... .... +++++.+. +...|+++ ++++..+++++.+ |+++++||||+.+
T Consensus 63 ~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 63 VQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 1111110 1111 11222221 11244553 6788888999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHh-CCCEEEEEeCCCch------------HHHhcCCeEEEEeCC
Q 005142 226 DSAA--------AFFVTQTLRCLSR-DGRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (712)
Q Consensus 226 D~~~--------~~~i~~~L~~l~~-~g~tvI~~~Hqp~~------------~i~~~~D~v~lL~~G 271 (712)
|... ...+++.|+++++ .|.|||+++|.... .+...+|.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 3556677888876 48999999998541 467899999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.49 E-value=1.1e-17 Score=164.31 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=111.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (712)
|++++|+||||||||||+++|++ + .+|++.++|.+.... ...++++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLL--- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHh---
Confidence 68999999999999999999997 2 268899988653221 2345667765444456788887765432100
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 005142 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (712)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~---~~~~~L--SGGerqRvsIA~------aL~~~P~llllDEPTsgLD~~~~ 230 (712)
-+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 72 ---------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 72 ---------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0100011111000 011234 888888888888 8999999888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CchHHHhcCCeEEEEeCCeEEEecChhhH
Q 005142 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (712)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~Hq-p~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 282 (712)
.. .+.++.+.+.+.++|.++|+ + +++.+.||+|+ ++|+++..|+++.+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888876667899999998 6 46889999999 99999999987643
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.44 E-value=3.7e-16 Score=153.32 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=94.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCcCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 154 (712)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 33 799999986531 11233567777543 35688898876543
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005142 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (712)
Q Consensus 155 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~ 234 (712)
........ ..++.++...++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 00000011111111110 0 1123469999999999999999999876 6888777777
Q ss_pred HHHHHHHhCCCEEEEEeC
Q 005142 235 QTLRCLSRDGRTVIASIH 252 (712)
Q Consensus 235 ~~L~~l~~~g~tvI~~~H 252 (712)
+.++.+...+..+|.+++
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 777665433334444443
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=2e-15 Score=166.36 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=112.1
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHH
Q 005142 69 HNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........+.++|++|++.+++.+||.
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEeeEEEEeecCccccccchh
Confidence 45 9999999999999 99999999999999999999842 222111 001111124689999999888899999
Q ss_pred HHHHHHhhhcCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCCCChHHHHHHHHHHHHhh
Q 005142 147 ETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLRGISGGERRRVSIALEILM 211 (712)
Q Consensus 147 E~l~~~~~l~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~d~~----vg--~~~~~~LSGGerqRvsIA~aL~~ 211 (712)
||+.++.... .....+ ......++.+... ++.. ..|+. +. ....++|+-.+ +.|+++|..
T Consensus 101 D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~ 175 (427)
T 2qag_B 101 STVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDS 175 (427)
T ss_dssp EEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCS
T ss_pred hhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhh
Confidence 9987753210 000001 1234455556654 4432 12322 11 00123577666 789999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~~Hq 253 (712)
+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999886 77789999888764
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.42 E-value=2.5e-14 Score=156.12 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=95.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcEEEEecCCCCCCCCCHHHHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+... ..+.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999988752 16999776655432 124567777741
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+|+. +..+ +.+|+++|..+|+++++|||+ |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1124 469999999999999999999 7666
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEe
Q 005142 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~ 269 (712)
... .++. +..|.+|+.++|+.+ +.+.+|+++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3433 356899999999953 678888887764
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.42 E-value=2.3e-14 Score=155.85 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=99.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CC--CcCcEEEEe-cCCCCCCCCCHHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVRE 147 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~E 147 (712)
++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|... .. ..+.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999885 89999998531 11 235678888 55321
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~ 227 (712)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777777899999999985
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667766544467899999953 678889998887663
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=1.1e-16 Score=174.37 Aligned_cols=166 Identities=15% Similarity=0.031 Sum_probs=100.2
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEecCCCcCcEEEEecCCCCCCCCC
Q 005142 71 VLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (712)
Q Consensus 71 iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~----G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (712)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |+|.++++.. ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46789999999 9999999999999999999999998874 6 6665532100 0000111112
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChHHHHHHHHHHHHh-hCCCEEEEeC-
Q 005142 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE- 220 (712)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~-~~P~llllDE- 220 (712)
. +++.+...- .......+.+.+ +..+..++ .+..+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 334332110 000000000000 00111111 12246777788888888775 6999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 221 --PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 221 --PT------sgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
|+ .++|...+..+.+.|+++.+ .|.+||+++|. ++..+++|.+.++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i 341 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVI 341 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Confidence 65 58999999999999998765 48899999875 3455666555444
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.39 E-value=1.4e-13 Score=148.78 Aligned_cols=121 Identities=19% Similarity=0.113 Sum_probs=88.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEecC-CCcCcEEEEecCCCCCCCCCHHH
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45666664 4899999999999999999999999987 64 8999987 65432 23356899999999999989998
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL 209 (712)
+ . + ...+.++..+.+.++++.+|+.+..|.. +.++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 4 1 1 1245566667788899999998777764 45799 999999999764
No 123
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.39 E-value=1.3e-15 Score=146.49 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
.+.+++++|+++++|++++|+||||||||||+++|+|.+ |. +|+|.++|.+.........+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 457899999999999999999999999999999999998 64 8999999976421111012799998888 899999
Q ss_pred HHHH
Q 005142 148 TISY 151 (712)
Q Consensus 148 ~l~~ 151 (712)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=7.6e-17 Score=172.40 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=99.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEecCCC--------------------cCcEEEE-
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~i~G~~~~~~--------------------~~~~~yv- 133 (712)
++++|+|+||||||||||.|.|.. .+ ..|+|.+||.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 33 389999999864321 0124455
Q ss_pred --ecCCCCCCCCCHHHHHHHHhhhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005142 134 --TQDDNLIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 134 --~Q~~~l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
+|+..+++..+|.||..++.....-.. .+......+++.++..+++.+..+.. .++|+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 566555556677776654311000000 00000000111122223333333322 2589999999988888
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 005142 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (712)
Q Consensus 209 L~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D 263 (712)
++.+|+++ ||| ..+.+.|+++. .+.||++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 888 67888888875 5899999999864 3344443
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=2.8e-13 Score=137.42 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=87.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~--~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (712)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.. .+ ...+-....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5699999999999999999999999999 44331 0014555554432 11 111111111
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-
Q 005142 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTSGLDSA- 228 (712)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIA~aL~--~~P~llllDEPTsgLD~~- 228 (712)
..+. ... +++++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g----~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 80 ERYG----LSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp HHTT----CCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred HHcC----CCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 1111 111 11222111 112245555432 33344444 489999999999999975
Q ss_pred ------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCchH------------------HHhcCCeEEEEeCC
Q 005142 229 ------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSE------------------VFELFDRLYLLSGG 271 (712)
Q Consensus 229 ------~-----~~~i~~~L~~l~~-~g~tvI~~~Hqp~~~------------------i~~~~D~v~lL~~G 271 (712)
. ...+++.|+++++ .|.|||+++|..... +..++|.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456667777765 489999999964321 22279999999865
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.38 E-value=3.1e-15 Score=145.68 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=89.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CC------C-c-CcEE----EEecCCCCCCCCCHHHHH
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL------S-F-GTAA----YVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~-~~------~-~-~~~~----yv~Q~~~l~~~lTV~E~l 149 (712)
++++|+|+||||||||+++|+|.+.+.....|.|.++|.+. .. . + +.++ +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999876433379999999762 11 1 1 2355 888887655 110
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 005142 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (712)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~ll-------llDEP 221 (712)
. . .+....+++.++. + . ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111235556655 4 3 47999986 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 005142 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (712)
Q Consensus 222 Tsg---LD~~~~~~i~~~L~~l~~~g 244 (712)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34556677888876665554
No 127
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=1.4e-12 Score=142.23 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=67.4
Q ss_pred ccCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 005142 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (712)
Q Consensus 191 ~~~~LSGGerqRv------sIA~aL~~~-P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D 263 (712)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++ ++...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 4568999999988 557888999 999999999999999999999999998743 47999999996 3678999
Q ss_pred eEEEEe
Q 005142 264 RLYLLS 269 (712)
Q Consensus 264 ~v~lL~ 269 (712)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.38 E-value=1.4e-15 Score=156.05 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEecCCC-cCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+.... ...+.+++|+..+++..++.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 987764 78888876542111 123455677777888889999998753210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCcccCCCChHHHHHHHHHHHH-hhCCCEEEEe--
Q 005142 157 L-----PDKMPWSEKRTLVERTIIEMGLQ--DCA-------DTVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD-- 219 (712)
Q Consensus 157 ~-----~~~~~~~~~~~~v~~~l~~lgL~--~~~-------d~~vg~~~~~~LSGGerqRvsIA~aL-~~~P~llllD-- 219 (712)
. -...+... ..++.+....... -.. -..+.+..+..||| |+ +++ +.+|+++++|
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 00111111 1122221111111 000 01111234557998 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhC
Q 005142 220 --EPTSGLDSAAAFFVTQTLRCLSRD 243 (712)
Q Consensus 220 --EPTsgLD~~~~~~i~~~L~~l~~~ 243 (712)
|||+|||..+...+.+.|+++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 129
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=6.2e-14 Score=147.86 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhh---hc
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR---LR 156 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~---l~ 156 (712)
+++.+++|.|+||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46789999999999999999999998864 22 0 12345677999998876 89999988631 10
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCcccCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~--~--~~d~~vg~~~~~~LSGGerqRvsIA--~aL~~~P~llllDEPTsgLD~~~ 229 (712)
...+.+.....+...+.++.+... . .....+. .+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000111111123455566665332 0 0111122 24467999999999987 555 999999999999999864
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.33 E-value=8.5e-14 Score=155.41 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=103.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----------CcCcEEEEecCCCCC
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 140 (712)
-+++|+++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998764 7999998765311 124589999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-hCCC-EEEE
Q 005142 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPR-LLFL 218 (712)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~-~~P~-llll 218 (712)
+.+||++++.++..-.. . .+ +++..|+.+... .+-.--+|++.+++++. ..|. ++|.
T Consensus 360 p~~tV~e~l~~a~~~~~--D--------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNI--D--------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTC--S--------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCC--C--------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 88899999988743110 0 00 111122211111 11122347888888663 4574 5655
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 005142 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (712)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hq 253 (712)
.++|+|.|.. +.++.+.+ .|.|.|++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 34555543 58899999994
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=2.4e-13 Score=132.42 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=43.5
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005142 209 ILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (712)
Q Consensus 209 L~~~P~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~ 257 (712)
.+.+|++|++|||++ ++|+.....+.+.+.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 345999999999995 9999999999999999888899999999998654
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.31 E-value=1.2e-12 Score=124.54 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=72.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHH
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456676 8999999999999999999999998754 24 11234433221100
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66666
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCCch
Q 005142 230 AFFVTQTLRCLSRDGRT-VIASIHQPSS 256 (712)
Q Consensus 230 ~~~i~~~L~~l~~~g~t-vI~~~Hqp~~ 256 (712)
+..+.+.+.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88899999998887888 8999997644
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.31 E-value=7.4e-14 Score=154.15 Aligned_cols=170 Identities=15% Similarity=0.082 Sum_probs=97.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (712)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 378999999999999999999999999999999742 1222221111223455554430 01111111100
Q ss_pred HhhhcCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005142 152 SARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (712)
Q Consensus 152 ~~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~ 229 (712)
.........+.....+ ++++.++..+++. +.....+|+|++||+.+|++|+.+|.++++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111100 1112222222332 223456999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhcCCeE
Q 005142 230 AFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL 265 (712)
Q Consensus 230 ~~~i~~~L~~l-~~~g~tvI~~~Hqp~~~i~~~~D~v 265 (712)
+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 7 555555544 4457777766644344555555443
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=2.3e-13 Score=145.89 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=97.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEecCCCCCCCCCHHHH
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+.... .-.+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998875 89999999874211 1235699999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
+.++...... . .+++..|+.+..+.. ...|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876321100 0 011112322211111 11233 38888887777778875443
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 005142 229 AAFFVTQTLRCLSR-DGRTVIASIHQP 254 (712)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvI~~~Hqp 254 (712)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466666777764 589999999963
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=1.3e-14 Score=156.37 Aligned_cols=172 Identities=18% Similarity=0.139 Sum_probs=111.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~------ 125 (712)
++.+|+++.+ +.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.+. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 4445555443 2357999999999999999999999999999999999998774 7999999876421
Q ss_pred ---CcCcEEEEecCCCCCCCC------------CHHHHHHHH-----------------------------hhhcCCCCC
Q 005142 126 ---SFGTAAYVTQDDNLIGTL------------TVRETISYS-----------------------------ARLRLPDKM 161 (712)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~-----------------------------~~l~~~~~~ 161 (712)
....++|++|++.++... +++|.+... ..+..+.
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--
Confidence 124578999998776532 123332110 0000000
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHH
Q 005142 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (712)
Q Consensus 162 ~~~~~~---~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~------~P~llllDEPTsgLD~~~~~~ 232 (712)
...+.+ +.+.+....+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 111210 113579999999999999987 688887 99999999999
Q ss_pred HHHHHHHHHh
Q 005142 233 VTQTLRCLSR 242 (712)
Q Consensus 233 i~~~L~~l~~ 242 (712)
+.+.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.28 E-value=6.9e-12 Score=139.30 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEE
Q 005142 193 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~----~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL 268 (712)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999999994 567889999999
Q ss_pred e
Q 005142 269 S 269 (712)
Q Consensus 269 ~ 269 (712)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.26 E-value=2.8e-13 Score=143.69 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=81.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC-----cCcEEEEecCCCCC-----CCCCH
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTV 145 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV 145 (712)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+|||+|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 87775 899999 88764221 13579999998553 67899
Q ss_pred HHHH--HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHH
Q 005142 146 RETI--SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (712)
Q Consensus 146 ~E~l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIA~a 208 (712)
|++ .|.. .++........+...+++++++.++|.+ ..+. +++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 888 4431 0112111122233457889999999985 5555 445799988999999873
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.20 E-value=7.9e-15 Score=162.08 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=90.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---------cCcEEEEe------
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT------ 134 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------ 134 (712)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.++|.+.... .+.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 467777 4 3899999999999999999999999998775 79999988764321 12344544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 135 ---QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 135 ---Q~~~l--~~~----lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
|++.. ++. .|+.+++.++..-++. .......... +.+.|..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88755 344 5889988876421100 0000001112 22346678886542 234699999999
Q ss_pred HHHHHhhCCCEEEE
Q 005142 205 IALEILMRPRLLFL 218 (712)
Q Consensus 205 IA~aL~~~P~llll 218 (712)
||++|+.+|++..-
T Consensus 302 LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEECTTTCEEEE
T ss_pred hhhhhcCCCCccCC
Confidence 99999999998763
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.3e-11 Score=132.69 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEecCC---CcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005142 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (712)
+.|.||||+|||||+++|+| +..++ .|++.++|.+... ....+++++|.+.+.-..+ + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 56664 7999999875321 1345788888764321100 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005142 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (712)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l 240 (712)
... ..+++.++.+......+..+ .+|| +..+|+++++|||++ ||..+...+.+.|.+.
T Consensus 104 ~~~----~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDR----IVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCH----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cch----HHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 011 12333343332211111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCch
Q 005142 241 SRDGRTVIASIHQPSS 256 (712)
Q Consensus 241 ~~~g~tvI~~~Hqp~~ 256 (712)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999753
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.19 E-value=4.3e-14 Score=160.15 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=109.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCC-CcCcEEEEecCCCCCCCCCHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~-~~~-~~~~~~yv~Q~~~l~~~lTV~ 146 (712)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999875 8999999864 222 123466666654422334555
Q ss_pred HHHHHHhhhcCC-----CCCCHHHHHH------------------HHHHHHHHcCCC-----c----cccccccCcccCC
Q 005142 147 ETISYSARLRLP-----DKMPWSEKRT------------------LVERTIIEMGLQ-----D----CADTVIGNWHLRG 194 (712)
Q Consensus 147 E~l~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lgL~-----~----~~d~~vg~~~~~~ 194 (712)
+.+..+.+.+ | ..+...+... .+.++++.+... . ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 5544333211 1 0111111110 122333333221 1 111111 12235
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCchHHHhcC
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELF 262 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~--~~Hqp~~~i~~~~ 262 (712)
+|||||||+.++. + | |+|||+.....+++.|.++.++|.|+++ ++|+. .++.+.+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999877642 2 7 9999998877777777777666788875 78884 4555544
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.19 E-value=9.9e-14 Score=138.69 Aligned_cols=164 Identities=23% Similarity=0.192 Sum_probs=91.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (712)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998652 2 135666666654432 222222100000011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005142 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (712)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA-~aL~~~P~llllDEPTsgLD~~~~~~i~~~L 237 (712)
..... ....+.+..+...+..+..+.+ ...++|+||+||++++ ++++.++.++++|||..
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 1222333333222222333333 2345799999999987 77788888777888741
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCeEEEecChhhHHHHH
Q 005142 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (712)
Q Consensus 238 ~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 286 (712)
.++.+.--.+|++.+.....+.+...+. +..|. +.+++...+
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 0112222366777776543355566552 34454 555565544
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.16 E-value=7.8e-11 Score=129.44 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=88.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (712)
.+-+++|++++|+||||||||||++.| .+..++.. ...+.|+++++. .+ ........
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~~rl~~~ 232 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RPVRLVSI 232 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CHHHHHHH
Confidence 367999999999999999999999954 56554420 012345554432 11 11111111
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 005142 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRvsIA~aL~--~~P~llllDEPTsgLD~~ 228 (712)
+.++. +.. +.+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|..
T Consensus 233 a~~~g----l~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 233 AQRFG----LDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred HHHcC----CCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 11111 111 0112111 111 11222 2233444444443 469999999999999975
Q ss_pred HH------------HHHHHHHHHHHh-CCCEEEEEeCCCc------------------hHHHhcCCeEEEEeCCe
Q 005142 229 AA------------FFVTQTLRCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLSGGK 272 (712)
Q Consensus 229 ~~------------~~i~~~L~~l~~-~g~tvI~~~Hqp~------------------~~i~~~~D~v~lL~~G~ 272 (712)
.. ..+++.|+++++ .|.|||+++|... ..+...+|.++.|++|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 678888999876 4999999999821 23456789999998653
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=3.8e-13 Score=147.20 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=118.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEecC------CCcC---cEEEEecCCCC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLA------S---NAFLSGTILLNGHKTK------LSFG---TAAYVTQDDNL 139 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~------~---~~~~~G~I~i~G~~~~------~~~~---~~~yv~Q~~~l 139 (712)
.+++|..++|+|+||||||||+|+|+|... | -...+|.|.++|.... ...+ ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 0 0134899999984321 0111 23577888888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC--CE
Q 005142 140 IGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP--RL 215 (712)
Q Consensus 140 ~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P--~l 215 (712)
....+..|++ .|...++. ++.++..+...+ |. .+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8877776655 33333221 111111111111 11 223356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhcCCeEE-EEeCC-eEEEecChhh
Q 005142 216 LFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (712)
Q Consensus 216 lllDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~~Hqp~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 281 (712)
+++|||+.++|.......++.++++ ++.|.|++ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 76777864 9984 67899999999 99999 9988877543
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=7.3e-12 Score=132.67 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC-----cCcEEEEecCCC-----------
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN----------- 138 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~----------- 138 (712)
.+.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999885 899999 88764211 235799999974
Q ss_pred -----CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005142 139 -----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (712)
Q Consensus 139 -----l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (712)
++|.+|+ ||+.|..... ..+...++.++|+.+||. +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5888999 9888753111 122345688999999995 55554 3445664
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.01 E-value=1.8e-12 Score=139.23 Aligned_cols=151 Identities=23% Similarity=0.209 Sum_probs=97.5
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----CCcCcEEEEe
Q 005142 68 THNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK-----LSFGTAAYVT 134 (712)
Q Consensus 68 ~~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~i~G~~~~-----~~~~~~~yv~ 134 (712)
...+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|++..++.+.. ...+.+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999877 899999999999999999999987321 113666665554321 1235689999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005142 135 QDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (712)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P 213 (712)
|.+.+.+ ++.|++..........- .......+.++..+..++|.. +++. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9887765 78888865433211000 001112233444444455533 4443 347999999998654
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005142 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (712)
Q Consensus 214 ~llllDEPTsgLD~~~~~~i~~~L~~l~~ 242 (712)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888899999999998875
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.99 E-value=4.2e-11 Score=126.96 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=65.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC---cC-cEEEEecCCCCCC----CCCHH
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FG-TAAYVTQDDNLIG----TLTVR 146 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i---~G~~~~~~---~~-~~~yv~Q~~~l~~----~lTV~ 146 (712)
.+.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..... .+ ..+|++|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45689999999999999999999999998775 899998 77653211 11 1699999987765 6899
Q ss_pred HHHH--HHh------hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005142 147 ETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (712)
Q Consensus 147 E~l~--~~~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (712)
|++. |.. .++........+....++++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 321 112121111222345688999999997643221 12467777763
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.96 E-value=1.4e-13 Score=136.87 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeC
Q 005142 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (712)
Q Consensus 205 IA~-aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~ 270 (712)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 345 677788888889999999999999999999887653 2334521 56999888753
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.95 E-value=2.1e-09 Score=108.84 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchH-------HHhcCCeEEEEeC
Q 005142 204 SIALEIL--MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (712)
Q Consensus 204 sIA~aL~--~~P~llllDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvI~~~Hqp~~~-------i~~~~D~v~lL~~ 270 (712)
..++.++ .+|+++++|+|++.+ |.....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 118 ~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 118 EVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3344444 589999999999988 6655666666676665 5789999999986431 4678899999974
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.93 E-value=4.6e-13 Score=140.05 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=85.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCC-CCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIGT 142 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 142 (712)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999 999999999999999999998653 7899998654211 12456677663 34555
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005142 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPT 222 (712)
+++.|++......+ .. .... .+.+..++ ....|||||+||+.|++++..+|++| ||++
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 56666654322111 00 0000 11222233 33469999999999999999999985 9886
Q ss_pred C
Q 005142 223 S 223 (712)
Q Consensus 223 s 223 (712)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.88 E-value=6.8e-10 Score=117.77 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=79.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005142 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (712)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 154 (712)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + . ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHHH-------
Confidence 45556789999999999999999999999988653 567777554321 0 0 0011
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005142 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (712)
Q Consensus 155 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv---sIA~aL~~~P~llllDEPTsgLD~~~~~ 231 (712)
....+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223444556532 124689999999 89999999999999999974 34555
Q ss_pred HHHHHHHHHH
Q 005142 232 FVTQTLRCLS 241 (712)
Q Consensus 232 ~i~~~L~~l~ 241 (712)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.86 E-value=3e-09 Score=118.91 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=111.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
-..|+++.+-+++|+++.|.|++|+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45688888889999999999999999999999998765321 22 123343322 122222
Q ss_pred HHH--Hh-------hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEE
Q 005142 149 ISY--SA-------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (712)
Q Consensus 149 l~~--~~-------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~--~~P~lll 217 (712)
..- +. +++. ......+ ..++.+.++.++..+.. +- ...++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 00 0111 1122222 33455555555433221 11 12368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEeC---------C--Cc-------hHHHhcCCeEEEEeC
Q 005142 218 LDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (712)
Q Consensus 218 lDEPTsgLD~--------~~~~~i~~~L~~l~~-~g~tvI~~~H---------q--p~-------~~i~~~~D~v~lL~~ 270 (712)
+|+++...+. .....+.+.|+.+++ .|.+||+++| + |. ..+...+|.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999997743 334677888888886 5899999999 2 42 146778999999987
Q ss_pred CeE
Q 005142 271 GKT 273 (712)
Q Consensus 271 G~i 273 (712)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.80 E-value=7.2e-09 Score=109.33 Aligned_cols=118 Identities=19% Similarity=0.084 Sum_probs=82.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (712)
+++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.|.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 99999999999999999999999988653 57787766542110 000 100
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 005142 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (712)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP-TsgLD~~~~~ 231 (712)
..+.+..++..... + .+-.-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01223345542211 0 01234566788999988899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 005142 232 FVTQTLRCL 240 (712)
Q Consensus 232 ~i~~~L~~l 240 (712)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 877776655
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.79 E-value=2e-10 Score=129.44 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=98.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-C-CCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005142 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS-R-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (712)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-~-~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (712)
.+++++.++..++|.|++||||||+|+.|.. + .... .|++.+.+.+.+.. ....| .+-+++.. +|.++...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-el~~~-~~lPhl~~--~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-ELSVY-EGIPHLLT--EVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-GGGGG-TTCTTBSS--SCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-hhhhh-ccCCcccc--eeecCHHH
Confidence 4778888999999999999999999999875 2 2222 46666555543210 00000 00111111 12222222
Q ss_pred Hhh-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCcccCCCChHHHHHH----------HHHHHHhhCCC-EEE
Q 005142 152 SAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCADT--VIGNWHLRGISGGERRRV----------SIALEILMRPR-LLF 217 (712)
Q Consensus 152 ~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~--~vg~~~~~~LSGGerqRv----------sIA~aL~~~P~-lll 217 (712)
+.. ++ ...++.++|. +.+...|+.+..+. .+ ...+||||+||. .+++++...|. +++
T Consensus 232 a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 232 AANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 111 11 0134455553 67888888764332 11 124788887752 34556677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCc
Q 005142 218 LDEPTSGLDSAAAFFVTQTLRCLSR----DGRTVIASIHQPS 255 (712)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~----~g~tvI~~~Hqp~ 255 (712)
+||++.-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3456666666654 3789999999997
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=6.9e-09 Score=109.53 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=88.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 159 (712)
++|++++|+||||+||||++..|++.+.+. +| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987642 34 24667776652 2355565543221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005142 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (712)
Q Consensus 160 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~ 239 (712)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 0122 23344554 45999999999 999998766555444433
Q ss_pred HH---hCCCEEEE-EeCCCchHHHhcCCeEEEEeCCeEEEe
Q 005142 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (712)
Q Consensus 240 l~---~~g~tvI~-~~Hqp~~~i~~~~D~v~lL~~G~iv~~ 276 (712)
+. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 37874 567777887766667777754
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.77 E-value=2.1e-09 Score=120.36 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~ 123 (712)
..+|+|+|+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4589999999999 999999999999999999999999886 89999999764
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.77 E-value=1.4e-10 Score=134.28 Aligned_cols=161 Identities=15% Similarity=0.110 Sum_probs=100.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCC--------
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-------- 138 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~-------- 138 (712)
+...+++++++.+++|+.++|+||||+|||||+++|++.+++. ..|.+.+++.+.......++|+++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 3456889999999999999999999999999999999998764 248899888765544456889887531
Q ss_pred --------------CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005142 139 --------------LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (712)
Q Consensus 139 --------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 204 (712)
.+..+++.+|+.....-..+...-. +...... +.+|.-+.... ...++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~-----~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPF-----QSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechh-----hcCCcccccccccc
Confidence 1111111111110000000000000 0000001 11121110001 12469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005142 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (712)
Q Consensus 205 IA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~ 239 (712)
.++....++.+||+||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 898888877777754
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.76 E-value=3.2e-10 Score=120.41 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=75.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCC
Q 005142 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (712)
Q Consensus 52 l~~~~l~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~ 110 (712)
|+++||++.| .++++++++.+ ++|++++|+||||||||||+++|+|++. |.
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 6677777665 35889999888 9999999999999999999999999876 64
Q ss_pred CceeEEEE---CCEecCC-CcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 111 ~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
+|+|.+ ||..... ..+.++++ |+..+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346788 8777788899999998876553
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.75 E-value=7.5e-09 Score=111.79 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=89.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (712)
+-+++|+++.|.||+|||||||+..++...... . ..+.|+.-+... . +. ++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~----~--~~--~a~--- 107 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHAL----D--PE--YAK--- 107 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCC----C--HH--HHH---
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCc----C--HH--HHH---
Confidence 478999999999999999999988877543211 1 234555544321 1 00 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCC---------
Q 005142 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL--------- 225 (712)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~--P~llllDEPTsgL--------- 225 (712)
.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++||+++.+
T Consensus 108 -------------------~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 108 -------------------KLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -------------------HTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -------------------HcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 122210 000111 11233 2345678888755 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH----HhCCCEEEEEeCCCch---------------HHHhcCCeEEEEeCCeEEEecC
Q 005142 226 -DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTVYFGE 278 (712)
Q Consensus 226 -D~---~~~~~i~~~L~~l----~~~g~tvI~~~Hqp~~---------------~i~~~~D~v~lL~~G~iv~~G~ 278 (712)
|+ ..+..+.+.++++ .+.|.|||++.|.... .+..++|.++.++.++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3468999999996421 2557899999998877665554
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.67 E-value=1.1e-11 Score=129.16 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=81.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCCC-CCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~-l~~~ 142 (712)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46789999999999 99999999999999999999764 5889998864211 1123566777642 4566
Q ss_pred CCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCE
Q 005142 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~l 215 (712)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777775332211000 001112222333322 24899999999999999999876
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=4e-09 Score=103.34 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005142 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (712)
Q Consensus 201 qRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l 240 (712)
+.+.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.64 E-value=1.6e-11 Score=125.99 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=80.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEecCC-CCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDD-NLIGT 142 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~-~l~~~ 142 (712)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46889999999999 99999999999999999999764 5889888764211 112355667763 34566
Q ss_pred CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCE
Q 005142 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~l 215 (712)
+++.|++......+.. .....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 6777777432221110 0001122222333332 24789999999999999999876
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.63 E-value=1.6e-09 Score=106.81 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=45.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----CCcCcEEEEecCCCCCCCCCHHHHH
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRETI 149 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (712)
|+.+++|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999863 2455554321 1124578999987666555554443
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.51 E-value=8.2e-08 Score=104.20 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=89.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCH---HHHHHHH
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV---RETISYS 152 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV---~E~l~~~ 152 (712)
.++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.|.+. ..| +.++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 39999999999999999999976411 0247999999865321 123455544321 112 1122111
Q ss_pred hh--h--c-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH----HHH-hhCCCEEEEe
Q 005142 153 AR--L--R-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLD 219 (712)
Q Consensus 153 ~~--l--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA----~aL-~~~P~llllD 219 (712)
.. + . ....... .+..+.+.++++.+++.+..--.|++ .+..+|+|+++|+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 10 0 0 0001111 22334567788888876544233344 3445788888988887 444 334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 005142 220 EPTSGLDSAAAFFVTQTLRCLSR 242 (712)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~ 242 (712)
+|+|++|......+.+.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.48 E-value=5.5e-09 Score=106.06 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=48.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-C--
Q 005142 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-- 125 (712)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~-~-- 125 (712)
...|+++|+...+ . . ++++++ ++++|+|||||||||||++|+|.+.|. +|+|.++|.+.. .
T Consensus 7 ~~~l~l~~~~~~~-----~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~ 70 (227)
T 1qhl_A 7 FRSLTLINWNGFF-----A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATS 70 (227)
T ss_dssp EEEEEEEEETTEE-----E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------
T ss_pred eeEEEEEeeeccc-----C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCc
Confidence 3468888876543 1 1 455666 899999999999999999999999886 899999997541 0
Q ss_pred ----------CcCcEEEEecC
Q 005142 126 ----------SFGTAAYVTQD 136 (712)
Q Consensus 126 ----------~~~~~~yv~Q~ 136 (712)
....++||+|+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 71 GSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp ------CGGGBCSSEEEEEEE
T ss_pred cccccchhhHhhcCcEEEEEe
Confidence 12457888873
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.42 E-value=2.7e-07 Score=103.39 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCCc
Q 005142 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQPS 255 (712)
Q Consensus 197 GGerqRvsIA~aL~~~P~llllDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvI~~~Hqp~ 255 (712)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- ..+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44777777777777777764 24678999999973
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.41 E-value=5.4e-08 Score=98.28 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLAS 108 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~~~ 108 (712)
.+..+++|+++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.36 E-value=1.4e-07 Score=92.59 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005142 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (712)
Q Consensus 203 vsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (712)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887653
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.34 E-value=1.1e-07 Score=102.77 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=30.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
-|+.+- +-+++|+++.|.||||||||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443 4689999999999999999999999997654
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.29 E-value=7.3e-07 Score=105.87 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=58.9
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCchHHHhcCCeEE
Q 005142 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRLY 266 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~aL~~~P~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~-~Hqp~~~i~~~~D~v~ 266 (712)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|+++ ||++ ..+.+++++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCC
Confidence 34579999999999999999999999999996 999887777777776554456788886 8875 56777777533
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.28 E-value=2.2e-08 Score=98.94 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=32.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~ 123 (712)
..+..+..++|++++|+||||||||||+++|++.+ |.+.++|.+.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 33334566899999999999999999999999865 7788887653
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.22 E-value=6.1e-07 Score=96.20 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=83.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
..-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 3457777777999999999999999999999888754321 11 22444432 1233322
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
..+.......+.+.+..+ ..||++|.+|+..|...+.++++++.|+|...
T Consensus 90 ------------------~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 ------------------ALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp ------------------HHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred ------------------HHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 222222222222222111 24999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEe
Q 005142 229 AAFFVTQTLRCLSR-D-GRTVIASI 251 (712)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvI~~~ 251 (712)
..++...++++.+ . |..+|++=
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3366677777765 4 67777763
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.17 E-value=1.4e-07 Score=97.19 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.6
Q ss_pred EEEEEeE-EEEEEccCCcccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 51 ~l~~~~l-~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.|+++|+ ++.+. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 88872 346799999999999 99999999999999999999998653
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.12 E-value=3.5e-06 Score=90.91 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCC
Q 005142 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP 254 (712)
Q Consensus 193 ~~LSGGerqRvsIA~aL~~~P~llllD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~--Hqp 254 (712)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+..... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 458999998876 55555777889999 99999999988888887776543 67888888 774
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.03 E-value=2.1e-07 Score=91.85 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=41.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I--~i~G~~~ 123 (712)
....+..++..++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 4456677777789999999999999999999999998752 5766 7877643
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.03 E-value=3.2e-06 Score=81.57 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=34.0
Q ss_pred cee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 355 7899999999 9999999999999999999997755
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.00 E-value=9.1e-07 Score=94.27 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=42.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~ 123 (712)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 46899999999999999999999999999999988754 68898877653
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.99 E-value=1.3e-06 Score=85.07 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998864
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.98 E-value=3.4e-08 Score=111.33 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=80.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEecCCC-CCCC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~-l~~~ 142 (712)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... .+.+..++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999763 57888888653211 112345555532 3344
Q ss_pred CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005142 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (712)
Q Consensus 143 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEP 221 (712)
+.+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 4555555322111100 00112233333444432 3678888888888888888887 7777
Q ss_pred C
Q 005142 222 T 222 (712)
Q Consensus 222 T 222 (712)
.
T Consensus 186 L 186 (499)
T 2dhr_A 186 L 186 (499)
T ss_dssp T
T ss_pred c
Confidence 5
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=2.9e-06 Score=83.50 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
....+++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999865
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.97 E-value=2.1e-05 Score=84.63 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvI~~~Hqp 254 (712)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876665 578999999986
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.95 E-value=2.6e-05 Score=84.13 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 005142 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (712)
Q Consensus 195 LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~H 252 (712)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 45566666665555 56666665
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.94 E-value=4.8e-06 Score=81.67 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
+++++|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998855
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.92 E-value=5e-05 Score=81.48 Aligned_cols=138 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
+-+++|+++.|.||+|+|||||+..++... .+. . .| | ....+.|+.-+..+ ...+-.....++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~-~g-----g-----~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-A-GG-----Y-----PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-T-TT-----B-----CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-c-cC-----C-----CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 578999999999999999999999888742 111 0 00 1 01335566554421 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTSGLDSA-- 228 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIA~aL~----~~P~llllDEPTsgLD~~-- 228 (712)
. ... +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1223322111 1123333 34555566666 568999999999865432
Q ss_pred ----------HHHHHHHHHHHHHh-CCCEEEEEeCC
Q 005142 229 ----------AAFFVTQTLRCLSR-DGRTVIASIHQ 253 (712)
Q Consensus 229 ----------~~~~i~~~L~~l~~-~g~tvI~~~Hq 253 (712)
...+++..|+++++ .|.+||++.|-
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13455666677665 58898888885
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.89 E-value=4e-06 Score=81.28 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i 118 (712)
.+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 368999999999999999999999987532 3555544
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=3.9e-06 Score=93.25 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=51.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEE-EeCCeEEEecChh
Q 005142 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 280 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~l-L~~G~iv~~G~~~ 280 (712)
.+|++||+||+..-.+. .+...+.+.+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6778888999888888899999999975443333333333 4457676666654
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=7e-05 Score=77.95 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCEEEEEeCCCc---hHH
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA----------AFFVTQTLRCLSR----DGRTVIASIHQPS---SEV 258 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~----------~~~i~~~L~~l~~----~g~tvI~~~Hqp~---~~i 258 (712)
+++++.|..++.+...+|.+|++||+.+-++... ...++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4567777778888888999999999987765322 2233333333221 2356788888752 344
Q ss_pred HhcCCeEEEE
Q 005142 259 FELFDRLYLL 268 (712)
Q Consensus 259 ~~~~D~v~lL 268 (712)
.+.||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567765544
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.85 E-value=6.8e-06 Score=81.00 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-HHhcCCeEEEEe
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~-i~~~~D~v~lL~ 269 (712)
+.|+.+|..++..+..+|+.+.++ ++.+++.....+.+.+... .+.++|+.+|...+. ..+.||.+++|.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888999988888877644332 2344555444444433322 356888888875321 256789888874
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.81 E-value=1.9e-05 Score=83.83 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=83.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
..-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 3457777777999999999999999999998887743211 11 124454422 343332
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~~~P~llllDEPTsgLD~~ 228 (712)
.. +.......+.+.+..+ | . ..||++|++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 22 1111111111111111 0 0 13899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeC
Q 005142 229 AAFFVTQTLRCLSRD-GRT--VIASIH 252 (712)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vI~~~H 252 (712)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 44566677777653 666 777654
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=8.5e-05 Score=78.98 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=78.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (712)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.....++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 579999999999999999999998887642 121 011 10 1235566544322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 005142 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGLDS---- 227 (712)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG-erqRvsIA~aL~---~~P~llllDEPTsgLD~---- 227 (712)
. ... +++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 111 1122211 111 112333 335677778887 57999999999975532
Q ss_pred ----HH----HHHHHHHHHHHHh-CCCEEEEEeCC
Q 005142 228 ----AA----AFFVTQTLRCLSR-DGRTVIASIHQ 253 (712)
Q Consensus 228 ----~~----~~~i~~~L~~l~~-~g~tvI~~~Hq 253 (712)
.. ..++++.|+++++ .|.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 2455566666665 48899988775
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.76 E-value=6.3e-06 Score=83.20 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~ 122 (712)
..++|++++|.|+||||||||+++|+|. .|+|.+++++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 4478999999999999999999999986 3778887765
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=1.7e-05 Score=78.71 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 192
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.71 E-value=2.4e-05 Score=82.42 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEeCCCchHHHhcCCeEE
Q 005142 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 266 (712)
Q Consensus 195 LSGGerqRvsIA~aL~--~~P~llllDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvI~~~Hqp~~~i~~~~D~v~ 266 (712)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+- ..+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 68999999 7899876 66778888888763 43 555666663 44555555443
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.68 E-value=4.6e-06 Score=85.57 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=42.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEecCC------CcCcEEEE
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKL------SFGTAAYV 133 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~--------i~G~~~~~------~~~~~~yv 133 (712)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.+... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 876664 88888 77765421 12346677
Q ss_pred ecC
Q 005142 134 TQD 136 (712)
Q Consensus 134 ~Q~ 136 (712)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.61 E-value=2.9e-05 Score=76.61 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999875
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.61 E-value=1.4e-05 Score=93.43 Aligned_cols=44 Identities=32% Similarity=0.351 Sum_probs=32.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 3457889999999999999999999999765431 135766 4554
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.60 E-value=1.7e-05 Score=78.47 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998764
No 197
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.59 E-value=9e-06 Score=88.44 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i 118 (712)
..+|+++|+.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 566655
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.58 E-value=1.1e-05 Score=79.64 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=33.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
.++|++++|+|+||||||||++.|++.+.+. .|+|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999987653 567766544
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=2.3e-05 Score=74.99 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
.+|++++|+|+|||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999864 55666654
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.53 E-value=0.00015 Score=80.07 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
++.+++++||+||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988754
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.50 E-value=0.00013 Score=76.58 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999865
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.48 E-value=1e-05 Score=86.05 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.0
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
.+..|++++..+..++ +++|+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3567788888887776 9999999999999999999998763
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.45 E-value=2.4e-05 Score=89.18 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~-i~G~~ 122 (712)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999998764 54 674 77754
No 204
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.44 E-value=3.5e-05 Score=77.83 Aligned_cols=66 Identities=17% Similarity=0.074 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCC
Q 005142 196 SGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (712)
Q Consensus 196 SGGerqRvsIA~aL~~~P~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D 263 (712)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.--+.+...++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 446555542 33578999999999976 6877766555555544433345677765554555555554
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=4.6e-05 Score=72.52 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=2.3e-05 Score=83.91 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.40 E-value=8.4e-05 Score=69.99 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.00071 Score=68.81 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998653
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.37 E-value=0.00089 Score=74.25 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=96.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
-.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 34577777779999999999999999999998887643211 11 123443322 233322
Q ss_pred HHH--HhhhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEE
Q 005142 149 ISY--SARLRLP------DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFL 218 (712)
Q Consensus 149 l~~--~~~l~~~------~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~--~~P~llll 218 (712)
..- +.....+ ..++..+ ..++.+.+..+.-.. -.+-+ ..++|..|. .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 1111111 0122222 233333333332111 11111 134677665 34455555 48999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEeCC-----------Cc-------hHHHhcCCeEEEEe
Q 005142 219 DEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQ-----------PS-------SEVFELFDRLYLLS 269 (712)
Q Consensus 219 DEPTsgLD~----------~~~~~i~~~L~~l~~-~g~tvI~~~Hq-----------p~-------~~i~~~~D~v~lL~ 269 (712)
|..+.-.+. .....+.+.|+.+++ .|.+||+++|- |. ..+...+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 123467778888876 58999999883 21 02456789998885
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00033 Score=68.46 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999987653
No 211
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.25 E-value=0.00011 Score=81.14 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=28.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~ 109 (712)
+.+.+|++++|+|||||||||||++|++...+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446789999999999999999999999987653
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.18 E-value=0.00024 Score=84.68 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=28.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+.+++|+.++|.||||+|||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999999999864
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.14 E-value=0.00099 Score=70.22 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=35.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 210 ~~~P~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
..++++||+||+-. ..|..+...+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234477888888888887777788888876543
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.13 E-value=3.4e-05 Score=82.73 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=41.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
.+.+++++++...+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356888999999999999999999999999999999987543 45555433
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.09 E-value=0.00012 Score=70.39 Aligned_cols=28 Identities=39% Similarity=0.424 Sum_probs=25.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
No 216
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.09 E-value=0.0056 Score=61.43 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Q 005142 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (712)
Q Consensus 211 ~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvI~~~Hq 253 (712)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555444443322 23588888884
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.06 E-value=0.00099 Score=68.61 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+.++.-+.|.||+|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999764
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.06 E-value=0.0002 Score=72.38 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=27.3
Q ss_pred eeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 72 LEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 72 L~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
|.++|+++. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 566677666 8999999999999999999999987753
No 219
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.99 E-value=6.8e-05 Score=81.11 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=43.1
Q ss_pred EEEEEeEEEEEEccCCcccceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+.|+||+..++ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 355666666553 4466888 899999999999999999999999999998865
No 220
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.98 E-value=0.00039 Score=68.78 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=25.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.+.++.+.+| +++|+|||||||||++++|.-.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3455666665 9999999999999999998643
No 221
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.97 E-value=0.0068 Score=65.24 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=28.5
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 45899999999999999999999877753
No 222
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.96 E-value=0.00017 Score=77.53 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=31.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEee
Confidence 457899999999999999999999977553 566665543
No 223
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.95 E-value=0.0013 Score=66.20 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEEe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------qp~~~i~~~~D~v~lL~ 269 (712)
+++++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777777999999999 66788899999999975
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.94 E-value=0.00093 Score=63.55 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.00015 Score=82.58 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=39.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34677778777 89999999999999999999999988653 67776655
No 226
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.005 Score=66.11 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.0005 Score=68.28 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i 118 (712)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876321123566654
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.84 E-value=0.0042 Score=65.53 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.1
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 71 iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
-|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5789999999999999999999988774
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.0004 Score=68.27 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999987663
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.001 Score=66.00 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=30.8
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCCc
Q 005142 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQPS 255 (712)
Q Consensus 211 ~~P~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vI~~~Hqp~ 255 (712)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888887766655 777777543
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.83 E-value=0.001 Score=73.58 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=31.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLAS------N---AFLSGTILLNGHK 122 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~------~---~~~~G~I~i~G~~ 122 (712)
.++|+|+||+|||||+|.|+|.... + ...+|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997530 0 1246899999975
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.82 E-value=0.00026 Score=70.00 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=32.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~I~i~G~ 121 (712)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999987642 56 6666653
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.82 E-value=0.0013 Score=72.89 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=29.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34666666789999999999999999999877764
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.73 E-value=0.001 Score=64.26 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=20.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988887 5799999999999999999974
No 235
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.014 Score=61.58 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999764
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.71 E-value=0.00068 Score=65.56 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432122466666543
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.00067 Score=65.60 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999875
No 238
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.65 E-value=0.0073 Score=60.97 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.62 E-value=0.0014 Score=70.75 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005142 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (712)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (712)
+++..+++.+| +++|.|||||||||+|++|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777888775 99999999999999999986
No 240
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.58 E-value=0.00043 Score=67.55 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3568899998888885 689999999999999999864
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.00079 Score=64.93 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
.+|.+++|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987753
No 242
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0018 Score=69.16 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.47 E-value=0.0011 Score=64.67 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005142 84 LTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (712)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.45 E-value=0.00064 Score=74.91 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=37.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005142 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (712)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~ 122 (712)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988763 5777776544
No 245
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0052 Score=61.38 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=41.1
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCch---------HHHhcCCeEEEEe
Q 005142 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS---------EVFELFDRLYLLS 269 (712)
Q Consensus 210 ~~~P~llllDEPTs----gLD~~~~~~i~~~L~~l~~-~g~tvI~~~Hqp~~---------~i~~~~D~v~lL~ 269 (712)
-.+|+++++|.-+. .-|.....+++..|+.+++ .|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999996542 1245556677888888776 58999999986422 1234689888885
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.39 E-value=0.031 Score=62.73 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34566655699999999999999999999877664
No 247
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.35 E-value=0.0029 Score=63.64 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=44.9
Q ss_pred HhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------------------chHHHhcCCeEE
Q 005142 209 ILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------------------SSEVFELFDRLY 266 (712)
Q Consensus 209 L~~~P~llllDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp---------------------~~~i~~~~D~v~ 266 (712)
+..+|+++++||+-.- .+........+-+..+...|..++.++|-- .+.+++.+|.|.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4468999999997642 332222333333344556788999998811 124557788877
Q ss_pred EEeCCeEEEecChhhHHHHHHH
Q 005142 267 LLSGGKTVYFGETSAAFEFFAQ 288 (712)
Q Consensus 267 lL~~G~iv~~G~~~~~~~~f~~ 288 (712)
+++ -+|+++.+-++.
T Consensus 161 lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 161 LID-------LPPRELLERLRD 175 (228)
T ss_dssp EBC-------CCHHHHHHHHHT
T ss_pred Eec-------CCHHHHHHHHHC
Confidence 753 466776666554
No 248
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.34 E-value=0.00033 Score=75.67 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=34.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 51 ~l~~~~l~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+.++||+..+ ..+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 46677776554 3466889999876 9999999999999999988643
No 249
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.27 E-value=0.0016 Score=70.92 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECCE
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-----S---NAFLSGTILLNGH 121 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-----~---~~~~~G~I~i~G~ 121 (712)
-+.+..|..++|+|+||+|||||+|+|+|... | -....|.|.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567788899999999999999999999721 0 0123688877664
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.27 E-value=0.00048 Score=73.91 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=34.1
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 005142 70 NVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 70 ~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888999998 99999999999999999998753
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.00098 Score=68.01 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=34.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~ 122 (712)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 344444 5667889999999999999999999987642 456666643
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.24 E-value=0.0022 Score=60.22 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 253
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.24 E-value=0.0018 Score=63.27 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999765
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.24 E-value=0.002 Score=61.21 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
|.++.|+|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998664
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.21 E-value=0.0023 Score=61.29 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998543
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.0026 Score=59.79 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 257
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.00061 Score=72.48 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=36.0
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 005142 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35678888888999998 999999999999999999997643
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.10 E-value=0.00053 Score=72.05 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.3
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005142 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (712)
Q Consensus 73 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~ 121 (712)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 677665 9999999999999999999999987643 456665443
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.97 E-value=0.0031 Score=60.31 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.94 E-value=0.0039 Score=59.65 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.93 E-value=0.0037 Score=62.84 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999999999754
No 262
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.0036 Score=59.61 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.90 E-value=0.0038 Score=63.18 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998654
No 264
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.0058 Score=59.88 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEEe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------qp~~~i~~~~D~v~lL~ 269 (712)
+.+++++||--- +|+. .++.++.++..|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6543 36677887778999999998 66788999999998875
No 265
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.81 E-value=0.017 Score=61.11 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6788999999999999999999999874
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0044 Score=63.26 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999765
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.75 E-value=0.042 Score=59.22 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877764
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.75 E-value=0.0047 Score=59.32 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998644
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.72 E-value=0.025 Score=59.70 Aligned_cols=27 Identities=44% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 005142 77 GYAEPGTLTALMGPSGSGKSTLL-DALSS 104 (712)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG 104 (712)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999995 44443
No 270
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.71 E-value=0.036 Score=59.38 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 271
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.71 E-value=0.021 Score=56.94 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhcCCeEEEEe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------qp~~~i~~~~D~v~lL~ 269 (712)
+.+++++||--- +|.. .++.|+.++..|+.||++-+ .++.++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33777887778999999999 78889999999999885
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.70 E-value=0.0049 Score=60.18 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987654
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.68 E-value=0.0061 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 274
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.66 E-value=0.064 Score=68.13 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999887643
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.66 E-value=0.0055 Score=57.30 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005142 84 LTALMGPSGSGKSTLLDAL 102 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~L 102 (712)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.65 E-value=0.0059 Score=58.41 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.60 E-value=0.0064 Score=60.04 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.56 E-value=0.0071 Score=58.83 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999997664
No 279
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.55 E-value=0.057 Score=54.39 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=45.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CchHHHhcCCeEEEEe
Q 005142 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (712)
Q Consensus 210 ~~~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hq---------p~~~i~~~~D~v~lL~ 269 (712)
+.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++..++|.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999876643 666666677789999999999 8899999999999985
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.52 E-value=0.0061 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998543
No 281
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.52 E-value=0.0068 Score=58.60 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.45 E-value=0.0079 Score=56.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 005142 83 TLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG 104 (712)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.39 E-value=0.0062 Score=58.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999988654
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.38 E-value=0.0078 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.36 E-value=0.0072 Score=62.94 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G 120 (712)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999987542 24456655
No 286
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.35 E-value=0.11 Score=56.02 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.0039 Score=61.04 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.32 E-value=0.0079 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998644
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.31 E-value=0.0086 Score=57.94 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999875
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.29 E-value=0.0084 Score=56.97 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.22 E-value=0.009 Score=58.34 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998654
No 292
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.09 Score=57.26 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+|-.=+.+.||+|+|||+|.+++|+..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 333448899999999999999999864
No 293
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.18 E-value=0.027 Score=62.45 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005142 198 GERRRVSIALEILMRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (712)
Q Consensus 198 GerqRvsIA~aL~~~P~llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hq 253 (712)
.+.+....+...+.+++++++.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 3666667777788888877665444 4555443 44555443 457788877765
No 294
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.094 Score=57.80 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=23.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|-.=+.+.||+|+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455568899999999999999999864
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.011 Score=56.50 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 296
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.15 E-value=0.015 Score=61.28 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=31.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888887 7899999999999999999999875
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.15 E-value=0.0094 Score=56.95 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 298
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.09 E-value=0.0088 Score=61.40 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.091 Score=57.76 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445558999999999999999999865
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.97 E-value=0.0091 Score=58.00 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998765
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.011 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 302
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.96 E-value=0.0098 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.93 E-value=0.012 Score=54.48 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 304
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.90 E-value=0.034 Score=62.36 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4555669999999999999999998754
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.90 E-value=0.014 Score=57.58 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 306
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.013 Score=54.60 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998754
No 307
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.87 E-value=0.027 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877654
No 308
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.014 Score=54.13 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.80 E-value=0.014 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.80 E-value=0.014 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 311
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.79 E-value=0.011 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.79 E-value=0.015 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.77 E-value=0.014 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.74 E-value=0.015 Score=53.94 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005142 85 TALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.73 E-value=0.011 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.71 E-value=0.013 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998754
No 317
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.70 E-value=0.022 Score=61.30 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=28.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C--C-CCceeEEEECC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S--N-AFLSGTILLNG 120 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~-----~--~-~~~~G~I~i~G 120 (712)
|-.++|+|.+|+|||||+|.|+|... | + ....|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 0 12357777765
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.69 E-value=0.015 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.68 E-value=0.015 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 320
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.67 E-value=0.014 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 322
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.66 E-value=0.19 Score=63.95 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=86.1
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHH
Q 005142 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (712)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (712)
.-|+.+- +=+++|+++.|.||+|+|||||.--++..... . | ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~------G-------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----E------G-------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----T------T-------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----h------C-------CCeEEEEccCchHH---H--
Confidence 3466654 36999999999999999999998776543211 1 1 23556654432211 1
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 005142 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (712)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~--~~P~llllDEPTsgL 225 (712)
.+.. +|+.. .+-.+-+ + -++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~~----------------------lGvd~-~~L~i~~--~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YARK----------------------LGVDI-DNLLCSQ--P--DTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHHH----------------------TTCCG-GGCEEEC--C--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHHH----------------------cCCCH-HHeEEcC--C--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 1111 22210 0000100 1 13333 234555554 579999999998765
Q ss_pred CH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCCc---------------hHHHhcCCeEEEEeCCeE
Q 005142 226 DS-------------AAAFFVTQTLRCL---S-RDGRTVIASIHQPS---------------SEVFELFDRLYLLSGGKT 273 (712)
Q Consensus 226 D~-------------~~~~~i~~~L~~l---~-~~g~tvI~~~Hqp~---------------~~i~~~~D~v~lL~~G~i 273 (712)
.. .....+.+.+++| + +.|.+||++.|-.. ..+...+|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1233445555555 3 36899999987421 245678898888876544
Q ss_pred EEe
Q 005142 274 VYF 276 (712)
Q Consensus 274 v~~ 276 (712)
...
T Consensus 555 ~~~ 557 (1706)
T 3cmw_A 555 VKE 557 (1706)
T ss_dssp EEE
T ss_pred ccc
Confidence 333
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.63 E-value=0.016 Score=57.65 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998644
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.62 E-value=0.019 Score=55.77 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998654
No 325
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.61 E-value=0.022 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.61 E-value=0.016 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 327
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.61 E-value=0.016 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 328
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.59 E-value=0.016 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 329
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.58 E-value=0.014 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.56 E-value=0.021 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998753
No 331
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.53 E-value=0.017 Score=58.54 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
-++|+|.+|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 332
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.53 E-value=0.011 Score=63.92 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 212 ~P~llllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999887774 667777888888887788999999999853
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.52 E-value=0.018 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.49 E-value=0.015 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 335
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.48 E-value=0.015 Score=55.48 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 336
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.48 E-value=0.02 Score=54.78 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.45 E-value=0.016 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998763
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.44 E-value=0.021 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998543
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.42 E-value=0.018 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.41 E-value=0.016 Score=57.26 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998654
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.41 E-value=0.019 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.41 E-value=0.016 Score=55.00 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
No 343
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.41 E-value=0.32 Score=53.66 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999997664
No 344
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.41 E-value=0.022 Score=53.56 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998654
No 345
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.41 E-value=0.019 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.39 E-value=0.019 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.37 E-value=0.021 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.34 E-value=0.02 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.34 E-value=0.018 Score=55.01 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.31 E-value=0.022 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997644
No 351
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.31 E-value=0.018 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005142 85 TALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998754
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.31 E-value=0.02 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.29 E-value=0.024 Score=57.78 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.29 E-value=0.021 Score=52.72 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005142 85 TALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~ 105 (712)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.28 E-value=0.024 Score=53.06 Aligned_cols=23 Identities=43% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998644
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.28 E-value=0.02 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.26 E-value=0.022 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.20 E-value=0.036 Score=54.65 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44566665554 6889999999999999999999865
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.20 E-value=0.026 Score=57.05 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++-.++|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998543
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.023 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.14 E-value=0.02 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.13 E-value=0.023 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998754
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.13 E-value=0.023 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.08 E-value=0.027 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.07 E-value=0.024 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 366
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.06 E-value=0.024 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998764
No 367
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.04 E-value=0.026 Score=59.11 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999864
No 368
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.02 E-value=0.015 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.02 E-value=0.02 Score=58.79 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.00 E-value=0.34 Score=62.49 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEecCCCCCCCCCHHHH
Q 005142 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (712)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (712)
-|+.+- +=+++|+++.|.||+|+|||||+..++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~~-- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---IY-- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---HH--
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---HH--
Confidence 455554 36999999999999999999998777643321 11 12445443322110 10
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 005142 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLD 226 (712)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIA~aL~--~~P~llllDEPTsgLD 226 (712)
+.+ +|+.. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 428 ---a~~----------------------lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 428 ---ARK----------------------LGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp ---HHH----------------------TTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---HHH----------------------cCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 111 12110 0001111 12332 3455666665 4799999999876552
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCch---------------HHHhcCCeEEEEeCCeE
Q 005142 227 -S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKT 273 (712)
Q Consensus 227 -~------------~~~~~i~~~L~~l---~~-~g~tvI~~~Hqp~~---------------~i~~~~D~v~lL~~G~i 273 (712)
. ..+..+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|+..+.
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 1 1234456666666 34 68999998874211 35667888888875543
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.99 E-value=0.027 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.97 E-value=0.034 Score=59.17 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999765
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.95 E-value=0.025 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 374
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.93 E-value=0.026 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.92 E-value=0.033 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998765
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.89 E-value=0.027 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.88 E-value=0.03 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.88 E-value=0.027 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 379
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.87 E-value=0.025 Score=57.79 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.87 E-value=0.024 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.87 E-value=0.028 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.--++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 382
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.86 E-value=0.029 Score=58.79 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 383
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.84 E-value=0.022 Score=55.08 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 384
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.83 E-value=0.028 Score=53.57 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.77 E-value=0.03 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.026 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.72 E-value=0.028 Score=56.93 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.71 E-value=0.031 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.70 E-value=0.032 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.027 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.69 E-value=0.027 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.67 E-value=0.031 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 393
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.67 E-value=0.028 Score=60.63 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005142 85 TALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|+|++|+|||||+|.|++..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.67 E-value=0.032 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 395
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.66 E-value=0.034 Score=57.51 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 368999999999999999999987643
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.65 E-value=0.017 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.63 E-value=0.032 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998654
No 398
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.62 E-value=0.03 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 399
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.61 E-value=0.018 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 400
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.59 E-value=0.034 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.59 E-value=0.037 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.032 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 403
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.54 E-value=0.034 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 404
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.53 E-value=0.031 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999974
No 405
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.52 E-value=0.034 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.51 E-value=0.03 Score=54.04 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999864
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.48 E-value=0.034 Score=57.55 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 005142 82 GTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.47 E-value=0.034 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 409
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.47 E-value=0.032 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.46 E-value=0.035 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.036 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 412
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.43 E-value=0.032 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 413
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.032 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.43 E-value=0.045 Score=54.37 Aligned_cols=28 Identities=46% Similarity=0.659 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
-+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 415
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.037 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 416
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 417
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.41 E-value=0.035 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 418
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.035 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 419
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.40 E-value=0.043 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999998654
No 420
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.39 E-value=0.032 Score=53.90 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 421
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.39 E-value=0.035 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.39 E-value=0.047 Score=57.53 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998764
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.39 E-value=0.037 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.37 E-value=0.037 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 425
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.36 E-value=0.027 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.36 E-value=0.042 Score=56.82 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 005142 83 TLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG 104 (712)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.34 E-value=0.041 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.28 E-value=0.032 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 429
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.27 E-value=0.033 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.036 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.23 E-value=0.049 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 432
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.21 E-value=0.037 Score=59.02 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999765
No 433
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.21 E-value=0.036 Score=55.75 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=22.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.20 E-value=0.041 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998765
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.17 E-value=0.043 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988654
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.17 E-value=0.041 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998644
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.14 E-value=0.043 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998753
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.13 E-value=0.038 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 439
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.13 E-value=0.046 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 440
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.12 E-value=0.036 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999864
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.11 E-value=0.043 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+.+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999997543
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.02 E-value=0.045 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.99 E-value=0.045 Score=57.95 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.97 E-value=0.031 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.96 E-value=0.045 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 446
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.96 E-value=0.039 Score=54.14 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 447
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.93 E-value=0.042 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 448
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.93 E-value=0.051 Score=54.96 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.89 E-value=0.057 Score=59.93 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=28.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 456689999999999999999999998754
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.80 E-value=0.043 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 451
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.79 E-value=0.045 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999754
No 452
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.74 E-value=0.062 Score=52.29 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7777666666555432 23567888888753
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.71 E-value=0.087 Score=50.73 Aligned_cols=35 Identities=20% Similarity=0.031 Sum_probs=27.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005142 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (712)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4455655554 4588999999999999999988875
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.71 E-value=0.049 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.058 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 456
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.64 E-value=0.05 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 457
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.59 E-value=0.06 Score=53.64 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (712)
.+|.++++.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.58 E-value=0.042 Score=55.94 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.57 E-value=0.062 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
+|.++++-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.56 E-value=0.071 Score=53.42 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999987653
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.052 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.56 E-value=0.063 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999765
No 463
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.47 E-value=0.067 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 464
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.47 E-value=0.061 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.41 E-value=0.029 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.33 E-value=0.06 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998653
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.064 Score=52.75 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.25 E-value=0.08 Score=55.67 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3579999999999999999998754
No 469
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.20 E-value=0.06 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998653
No 470
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.14 E-value=0.043 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005142 84 LTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (712)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 471
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.08 E-value=0.031 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.97 E-value=0.21 Score=55.74 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=53.5
Q ss_pred cCCCChHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005142 192 LRGISGGERRRVSIAL--EILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (712)
Q Consensus 192 ~~~LSGGerqRvsIA~--aL~~---------------~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp 254 (712)
..+.||||+|-.-+|+ +++. .=.++++||. +-+|.......+++++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999644433 3332 1257999999 999999999999999876 7777777744
Q ss_pred chHHHhcCCeEEEEe
Q 005142 255 SSEVFELFDRLYLLS 269 (712)
Q Consensus 255 ~~~i~~~~D~v~lL~ 269 (712)
.+....|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3566788888774
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.89 E-value=0.076 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.86 E-value=0.081 Score=57.63 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-.+++|+||+|||||||...|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.83 E-value=0.069 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.025 Score=59.58 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~ 255 (712)
+++++++|| ...|+......+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788998888888887776533 345666777664
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.70 E-value=0.023 Score=57.75 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=23.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
......| +.|.||+|+|||||+++|++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334445 7799999999999999999754
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.68 E-value=0.074 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 479
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.59 E-value=0.23 Score=63.98 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.4
Q ss_pred cceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005142 69 HNVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALS 103 (712)
Q Consensus 69 ~~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (712)
...|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45688888 589999999999999999999998876
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.31 E-value=0.11 Score=50.28 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc---------hHHHhcCCeEEEEe
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLS 269 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~---------~~i~~~~D~v~lL~ 269 (712)
+++++++||--. +|+ .+++.|+.++++|..|+++.++.. ..+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366777778778999999888422 44566788887664
No 481
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.24 E-value=0.11 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~ 256 (712)
+..+|++||.- .|+......+.+.|... ..+..+|++++.+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44679999984 68888888888777322 234567777777543
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.08 E-value=0.11 Score=49.93 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005142 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (712)
Q Consensus 212 ~P~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp 254 (712)
++.++++||. ..++......+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 446666666666666553 2345677777765
No 483
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.05 E-value=0.18 Score=49.34 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=54.2
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhcCCeEEEEeCCe
Q 005142 200 RRRVSIALEIL--MRPRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (712)
Q Consensus 200 rqRvsIA~aL~--~~P~llllDEPTs--gLD~~~~~~i~~~L~~l~~~g~tvI~~~Hqp~~~i~~~~D~v~lL~~G~ 272 (712)
++.+.-++..+ .+.++++|||.+. .++.....++++.|.+- -.+..||+|...+..++.+++|.|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34555666777 5679999999976 34444555677777532 2578999999999999999999999997543
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.05 E-value=0.035 Score=66.10 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.1
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.++.+.+|+.++|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678999999999999999999999998763
No 485
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.00 E-value=0.11 Score=53.57 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999998765
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.65 E-value=0.13 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.64 E-value=0.16 Score=53.14 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998876
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.63 E-value=0.14 Score=54.77 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998765
No 489
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.59 E-value=0.082 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005142 84 LTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 490
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.45 E-value=0.14 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999875
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.44 E-value=0.11 Score=56.98 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005142 84 LTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.39 E-value=0.14 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005142 83 TLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
--++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998654
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.82 E-value=0.052 Score=52.42 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005142 84 LTALMGPSGSGKSTLLDALSS 104 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (712)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998864
No 494
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.18 E-value=0.13 Score=56.12 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005142 85 TALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
++|+|.+++|||||+|.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
No 495
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.17 E-value=0.16 Score=53.14 Aligned_cols=52 Identities=13% Similarity=-0.005 Sum_probs=30.0
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhc
Q 005142 210 LMRPRLLFLDEPT-SGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL 261 (712)
Q Consensus 210 ~~~P~llllDEPT-sgLD~~~~~~i~~-~L~~l~~~g~tvI~~~Hqp~~~i~~~ 261 (712)
+.++++|++||.- ..+|......++. +|......++.+|++|+.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444554 55544334567888888776655544
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.03 E-value=0.15 Score=54.08 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (712)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998764
No 497
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.99 E-value=0.14 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999765
No 498
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.95 E-value=0.17 Score=53.09 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005142 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (712)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (712)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 455678999999999999999998753
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.87 E-value=0.099 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 005142 84 LTALMGPSGSGKSTLLDA-LSSR 105 (712)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~-LaG~ 105 (712)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 500
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.83 E-value=0.12 Score=57.34 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005142 82 GTLTALMGPSGSGKSTLLDALSSR 105 (712)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (712)
|=-++|+|++|+|||||+|.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999985
Done!