Query 005143
Match_columns 712
No_of_seqs 403 out of 1716
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 18:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 3.7E-91 8.1E-96 708.4 22.1 229 337-566 1-229 (229)
2 PF01852 START: START domain; 99.7 8.5E-18 1.8E-22 167.1 12.8 202 342-566 1-205 (206)
3 smart00234 START in StAR and p 99.7 3.1E-16 6.8E-21 156.3 17.6 202 343-567 2-206 (206)
4 KOG0842 Transcription factor t 99.7 4.8E-17 1.1E-21 171.9 7.9 68 130-197 149-216 (307)
5 KOG0483 Transcription factor H 99.6 1.7E-16 3.7E-21 159.3 5.8 80 138-217 54-133 (198)
6 KOG0488 Transcription factor B 99.6 5.8E-16 1.3E-20 165.5 5.3 66 130-195 168-233 (309)
7 KOG0843 Transcription factor E 99.6 6.6E-16 1.4E-20 150.7 4.3 65 133-197 101-165 (197)
8 KOG0485 Transcription factor N 99.6 1.5E-15 3.3E-20 151.5 6.9 66 130-195 100-165 (268)
9 KOG0489 Transcription factor z 99.6 6.6E-16 1.4E-20 161.8 2.1 65 132-196 157-221 (261)
10 KOG0487 Transcription factor A 99.6 3.8E-15 8.3E-20 157.7 7.1 65 132-196 233-297 (308)
11 KOG0850 Transcription factor D 99.6 2.2E-15 4.7E-20 152.0 4.9 72 128-199 116-187 (245)
12 KOG0484 Transcription factor P 99.5 1E-15 2.2E-20 137.3 1.3 64 131-194 14-77 (125)
13 KOG0494 Transcription factor C 99.5 4.1E-15 9E-20 151.6 5.4 70 137-206 144-213 (332)
14 KOG0848 Transcription factor C 99.5 7.6E-14 1.6E-18 143.2 12.1 68 130-197 195-262 (317)
15 KOG0492 Transcription factor M 99.5 2.5E-14 5.4E-19 142.2 6.0 65 130-194 140-204 (246)
16 PF00046 Homeobox: Homeobox do 99.5 3.1E-14 6.7E-19 115.1 3.0 57 135-191 1-57 (57)
17 KOG2251 Homeobox transcription 99.4 6.3E-14 1.4E-18 140.9 5.0 67 130-196 33-99 (228)
18 KOG0493 Transcription factor E 99.4 9.3E-13 2E-17 134.7 12.1 59 135-193 247-305 (342)
19 KOG0844 Transcription factor E 99.3 6.4E-13 1.4E-17 138.2 3.7 66 130-195 177-242 (408)
20 TIGR01565 homeo_ZF_HD homeobox 99.3 4.5E-12 9.8E-17 104.1 5.7 53 134-186 1-57 (58)
21 KOG0486 Transcription factor P 99.3 3E-12 6.4E-17 134.3 5.6 62 132-193 110-171 (351)
22 COG5576 Homeodomain-containing 99.3 2.3E-12 5E-17 125.5 4.0 65 133-197 50-114 (156)
23 smart00389 HOX Homeodomain. DN 99.3 1.9E-12 4.1E-17 103.8 2.8 56 135-190 1-56 (56)
24 cd00086 homeodomain Homeodomai 99.3 2.3E-12 5.1E-17 103.9 3.2 56 136-191 2-57 (59)
25 KOG0491 Transcription factor B 99.2 7.3E-13 1.6E-17 127.7 -0.7 66 132-197 98-163 (194)
26 cd00177 START Lipid-binding ST 99.2 1.5E-10 3.2E-15 112.5 14.8 189 346-563 2-190 (193)
27 KOG3802 Transcription factor O 99.2 1.3E-11 2.8E-16 133.7 5.1 63 131-193 291-353 (398)
28 KOG0847 Transcription factor, 99.1 1.4E-11 3E-16 123.5 2.0 66 130-195 163-228 (288)
29 KOG4577 Transcription factor L 99.1 5.7E-11 1.2E-15 123.2 5.7 73 133-205 166-238 (383)
30 cd08871 START_STARD10-like Lip 99.0 9.1E-09 2E-13 105.1 17.5 200 346-578 10-213 (222)
31 cd08867 START_STARD4_5_6-like 98.9 3.1E-08 6.7E-13 100.1 16.8 195 340-565 3-205 (206)
32 cd08868 START_STARD1_3_like Ch 98.9 2E-08 4.3E-13 101.6 15.2 196 340-568 6-208 (208)
33 KOG0490 Transcription factor, 98.9 8.8E-10 1.9E-14 111.9 5.4 64 131-194 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.7 2.2E-07 4.8E-12 94.7 14.3 172 340-535 3-177 (204)
35 KOG0849 Transcription factor P 98.7 1.3E-08 2.8E-13 111.5 3.7 64 131-194 173-236 (354)
36 cd08903 START_STARD5-like Lipi 98.6 1.2E-06 2.5E-11 89.3 15.9 193 340-565 3-205 (208)
37 KOG1168 Transcription factor A 98.6 2.9E-08 6.2E-13 103.5 4.1 62 132-193 307-368 (385)
38 cd08869 START_RhoGAP C-termina 98.5 1.4E-06 3E-11 88.0 13.0 167 345-540 4-173 (197)
39 cd08909 START_STARD13-like C-t 98.5 2.6E-06 5.7E-11 86.9 14.7 129 393-536 48-178 (205)
40 PLN00188 enhanced disease resi 98.5 1.2E-06 2.6E-11 101.9 13.0 129 397-538 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.4 3.3E-06 7.1E-11 86.1 12.8 193 339-566 5-207 (209)
42 KOG0775 Transcription factor S 98.2 6.9E-07 1.5E-11 93.0 3.5 50 141-190 183-232 (304)
43 cd08902 START_STARD4-like Lipi 98.2 2.1E-05 4.5E-10 80.0 13.9 191 340-563 3-199 (202)
44 cd08906 START_STARD3-like Chol 98.2 3.2E-05 6.9E-10 79.0 15.4 195 339-565 5-206 (209)
45 cd08910 START_STARD2-like Lipi 98.1 4E-05 8.7E-10 78.1 12.5 183 352-567 17-206 (207)
46 cd08877 START_2 Uncharacterize 98.0 0.00011 2.4E-09 74.9 13.5 200 340-566 3-213 (215)
47 KOG0774 Transcription factor P 97.9 4.7E-06 1E-10 86.3 3.0 59 135-193 189-250 (334)
48 cd08908 START_STARD12-like C-t 97.9 0.00014 3.1E-09 74.3 12.6 162 344-534 11-175 (204)
49 cd08876 START_1 Uncharacterize 97.8 0.00022 4.7E-09 70.9 12.7 152 398-565 42-194 (195)
50 cd08874 START_STARD9-like C-te 97.7 0.0002 4.3E-09 73.2 10.8 130 391-539 44-181 (205)
51 cd08907 START_STARD8-like C-te 97.6 0.00033 7.1E-09 71.5 10.5 165 344-536 11-178 (205)
52 PF05920 Homeobox_KN: Homeobox 97.6 1.1E-05 2.4E-10 61.8 -0.3 34 155-188 7-40 (40)
53 cd08870 START_STARD2_7-like Li 97.5 0.0028 6E-08 64.6 15.3 153 397-567 50-208 (209)
54 KOG2252 CCAAT displacement pro 97.5 7E-05 1.5E-09 84.8 3.5 61 130-190 416-476 (558)
55 KOG0490 Transcription factor, 97.5 9E-05 1.9E-09 75.3 3.8 64 131-194 150-213 (235)
56 cd08872 START_STARD11-like Cer 97.4 0.0055 1.2E-07 64.0 15.6 195 345-565 9-224 (235)
57 cd08911 START_STARD7-like Lipi 97.3 0.003 6.6E-08 64.4 12.9 152 398-567 46-206 (207)
58 cd08873 START_STARD14_15-like 96.9 0.0067 1.5E-07 63.5 10.6 123 393-532 78-203 (235)
59 cd08913 START_STARD14-like Lip 96.2 0.041 8.8E-07 57.9 11.4 126 402-541 86-215 (240)
60 KOG1146 Homeobox protein [Gene 96.2 0.0025 5.3E-08 78.6 2.5 61 134-194 903-963 (1406)
61 cd08914 START_STARD15-like Lip 96.1 0.034 7.4E-07 58.3 10.0 128 399-541 80-211 (236)
62 KOG0773 Transcription factor M 94.7 0.024 5.2E-07 61.9 3.5 62 134-195 239-303 (342)
63 PF11569 Homez: Homeodomain le 93.7 0.019 4E-07 47.4 -0.1 42 145-186 9-50 (56)
64 cd08876 START_1 Uncharacterize 90.0 0.55 1.2E-05 46.7 5.5 59 610-677 14-72 (195)
65 cd08871 START_STARD10-like Lip 89.6 0.61 1.3E-05 47.8 5.7 59 611-678 21-80 (222)
66 PRK09413 IS2 repressor TnpA; R 89.6 1.2 2.6E-05 41.8 7.1 39 139-182 11-50 (121)
67 cd08873 START_STARD14_15-like 89.4 0.6 1.3E-05 49.1 5.5 66 611-689 53-118 (235)
68 cd08874 START_STARD9-like C-te 89.4 0.68 1.5E-05 47.6 5.8 60 610-679 19-78 (205)
69 cd08860 TcmN_ARO-CYC_like N-te 88.9 4.6 0.0001 39.0 10.9 140 401-567 5-144 (146)
70 cd08904 START_STARD6-like Lipi 88.7 0.67 1.4E-05 47.7 5.2 58 612-678 21-78 (204)
71 cd08870 START_STARD2_7-like Li 87.9 0.96 2.1E-05 46.1 5.7 56 613-677 22-82 (209)
72 KOG4196 bZIP transcription fac 87.7 1.7 3.6E-05 41.8 6.6 87 139-259 22-109 (135)
73 cd05018 CoxG Carbon monoxide d 87.6 4.6 0.0001 37.1 9.7 119 402-546 6-124 (144)
74 KOG4005 Transcription factor X 87.5 2 4.2E-05 45.1 7.5 39 183-221 82-122 (292)
75 cd08866 SRPBCC_11 Ligand-bindi 86.9 6.9 0.00015 36.3 10.5 132 401-566 3-143 (144)
76 cd08914 START_STARD15-like Lip 86.9 1.1 2.3E-05 47.3 5.4 57 610-677 53-109 (236)
77 cd08864 SRPBCC_DUF3074 DUF3074 86.7 3.1 6.7E-05 43.0 8.6 103 432-540 76-184 (208)
78 cd08907 START_STARD8-like C-te 86.2 1.4 3E-05 45.5 5.7 65 610-690 24-89 (205)
79 cd08910 START_STARD2-like Lipi 86.0 1.3 2.7E-05 45.4 5.3 59 610-677 22-81 (207)
80 cd08903 START_STARD5-like Lipi 85.0 1.3 2.7E-05 45.4 4.8 61 611-680 20-82 (208)
81 KOG3623 Homeobox transcription 84.9 0.5 1.1E-05 56.0 2.0 46 146-191 568-613 (1007)
82 PF02183 HALZ: Homeobox associ 84.9 1.9 4.1E-05 34.2 4.6 40 193-260 2-41 (45)
83 cd08911 START_STARD7-like Lipi 83.9 1.5 3.3E-05 44.8 4.8 59 611-678 19-78 (207)
84 cd08902 START_STARD4-like Lipi 83.7 1.9 4E-05 44.5 5.3 60 611-679 21-80 (202)
85 cd08913 START_STARD14-like Lip 83.6 1.7 3.8E-05 45.8 5.2 57 610-677 56-112 (240)
86 cd07819 SRPBCC_2 Ligand-bindin 83.5 11 0.00025 34.3 10.1 132 401-564 6-139 (140)
87 KOG2761 START domain-containin 83.5 6.1 0.00013 41.2 8.9 138 407-564 64-211 (219)
88 cd08877 START_2 Uncharacterize 82.7 2.1 4.5E-05 43.7 5.3 68 599-677 10-77 (215)
89 cd07813 COQ10p_like Coenzyme Q 82.4 9.5 0.00021 35.4 9.2 134 402-567 4-137 (138)
90 PRK15422 septal ring assembly 82.4 4.7 0.0001 35.6 6.4 60 190-263 12-75 (79)
91 cd08867 START_STARD4_5_6-like 81.3 5.1 0.00011 40.6 7.4 72 592-678 7-80 (206)
92 PF06005 DUF904: Protein of un 81.2 4.7 0.0001 35.1 6.1 51 192-263 14-68 (72)
93 PRK10724 hypothetical protein; 80.9 20 0.00043 35.3 11.2 137 400-568 18-154 (158)
94 PF04218 CENP-B_N: CENP-B N-te 80.7 1.3 2.8E-05 36.0 2.3 46 135-185 1-46 (53)
95 cd00177 START Lipid-binding ST 80.6 3.8 8.3E-05 39.6 6.1 56 613-677 15-70 (193)
96 PF10604 Polyketide_cyc2: Poly 79.5 48 0.001 29.9 13.2 35 402-440 7-41 (139)
97 cd07817 SRPBCC_8 Ligand-bindin 78.9 35 0.00077 31.0 11.7 133 403-566 6-138 (139)
98 cd08861 OtcD1_ARO-CYC_like N-t 77.5 18 0.00038 33.5 9.3 27 402-428 4-30 (142)
99 COG3074 Uncharacterized protei 76.4 8.9 0.00019 33.2 6.1 60 191-264 13-76 (79)
100 cd08868 START_STARD1_3_like Ch 76.0 6.7 0.00014 39.8 6.4 59 612-679 23-82 (208)
101 TIGR00219 mreC rod shape-deter 75.8 3.8 8.3E-05 44.2 4.9 41 198-255 68-108 (283)
102 cd08872 START_STARD11-like Cer 74.9 8.8 0.00019 40.3 7.1 61 609-677 22-84 (235)
103 cd08869 START_RhoGAP C-termina 74.2 10 0.00022 38.4 7.3 57 611-677 17-73 (197)
104 cd07821 PYR_PYL_RCAR_like Pyra 74.2 52 0.0011 29.6 11.3 134 403-566 7-140 (140)
105 PRK13922 rod shape-determining 69.6 6.7 0.00014 41.7 4.9 41 197-255 70-110 (276)
106 PF12711 Kinesin-relat_1: Kine 68.5 13 0.00028 33.6 5.6 46 201-261 22-67 (86)
107 cd07822 SRPBCC_4 Ligand-bindin 67.1 55 0.0012 29.5 9.9 51 513-566 91-141 (141)
108 cd08865 SRPBCC_10 Ligand-bindi 65.6 85 0.0018 28.1 10.8 135 403-566 5-139 (140)
109 KOG0971 Microtubule-associated 64.5 20 0.00044 44.1 7.8 58 199-262 335-392 (1243)
110 cd08906 START_STARD3-like Chol 63.9 19 0.00041 37.0 6.7 56 612-676 24-80 (209)
111 KOG4343 bZIP transcription fac 60.7 18 0.00039 42.2 6.2 25 356-382 439-463 (655)
112 cd07818 SRPBCC_1 Ligand-bindin 60.0 68 0.0015 29.9 9.3 51 515-566 99-149 (150)
113 cd08908 START_STARD12-like C-t 59.2 18 0.00039 37.4 5.6 53 614-676 28-80 (204)
114 PF01527 HTH_Tnp_1: Transposas 56.3 1.4 3E-05 37.2 -2.6 43 136-182 2-44 (76)
115 smart00340 HALZ homeobox assoc 54.2 13 0.00029 29.2 2.7 20 241-260 15-34 (44)
116 PF06156 DUF972: Protein of un 50.4 34 0.00073 32.0 5.3 21 239-259 37-57 (107)
117 smart00338 BRLZ basic region l 50.0 64 0.0014 26.9 6.5 39 195-254 25-63 (65)
118 PRK14872 rod shape-determining 49.0 17 0.00038 40.3 3.7 41 197-255 58-98 (337)
119 PF07407 Seadorna_VP6: Seadorn 49.0 22 0.00048 39.2 4.4 22 197-218 33-54 (420)
120 PF04880 NUDE_C: NUDE protein, 47.3 18 0.00039 36.4 3.2 20 239-258 25-44 (166)
121 PF14389 Lzipper-MIP1: Leucine 46.1 1.4E+02 0.003 26.8 8.4 70 187-259 6-75 (88)
122 PRK13169 DNA replication intia 45.1 44 0.00094 31.5 5.2 20 239-258 37-56 (110)
123 TIGR03752 conj_TIGR03752 integ 44.7 32 0.00069 39.8 5.0 22 240-261 111-132 (472)
124 cd07823 SRPBCC_5 Ligand-bindin 44.4 11 0.00023 35.7 1.1 26 650-675 3-28 (146)
125 PF06785 UPF0242: Uncharacteri 44.4 30 0.00066 38.3 4.5 74 181-266 54-127 (401)
126 cd07824 SRPBCC_6 Ligand-bindin 44.4 2E+02 0.0044 26.9 9.8 120 404-549 8-130 (146)
127 COG1792 MreC Cell shape-determ 44.2 47 0.001 36.0 6.0 43 195-255 65-107 (284)
128 COG4026 Uncharacterized protei 43.8 63 0.0014 34.1 6.5 49 189-258 142-190 (290)
129 KOG4571 Activating transcripti 41.7 74 0.0016 34.7 6.9 45 191-256 243-287 (294)
130 PRK00888 ftsB cell division pr 41.2 41 0.00088 31.2 4.3 41 176-217 15-55 (105)
131 smart00234 START in StAR and p 40.7 55 0.0012 32.5 5.6 60 612-678 18-78 (206)
132 KOG4403 Cell surface glycoprot 39.7 77 0.0017 36.4 6.9 24 340-364 399-422 (575)
133 cd07819 SRPBCC_2 Ligand-bindin 39.5 22 0.00048 32.3 2.4 30 648-677 4-33 (140)
134 KOG2761 START domain-containin 39.3 17 0.00036 38.1 1.6 59 609-677 25-85 (219)
135 PF14197 Cep57_CLD_2: Centroso 39.2 88 0.0019 27.0 5.7 44 200-257 23-66 (69)
136 KOG0709 CREB/ATF family transc 39.1 7E+02 0.015 29.2 15.2 98 138-263 218-318 (472)
137 cd08865 SRPBCC_10 Ligand-bindi 38.9 19 0.00041 32.4 1.8 28 649-676 2-29 (140)
138 PF00170 bZIP_1: bZIP transcri 37.8 1.5E+02 0.0033 24.6 6.9 23 195-217 25-47 (64)
139 PF10604 Polyketide_cyc2: Poly 37.7 31 0.00067 31.2 3.0 28 649-676 5-32 (139)
140 KOG1146 Homeobox protein [Gene 37.2 35 0.00076 43.8 4.2 59 135-193 445-503 (1406)
141 cd08866 SRPBCC_11 Ligand-bindi 34.8 24 0.00053 32.6 1.9 28 649-676 2-29 (144)
142 cd07821 PYR_PYL_RCAR_like Pyra 34.7 29 0.00064 31.3 2.4 28 649-676 4-31 (140)
143 cd08905 START_STARD1-like Chol 34.4 1E+02 0.0022 31.6 6.5 77 591-678 5-82 (209)
144 cd07812 SRPBCC START/RHO_alpha 34.1 3E+02 0.0065 23.5 10.4 35 402-440 4-38 (141)
145 PF15058 Speriolin_N: Sperioli 33.9 62 0.0013 33.4 4.6 39 199-259 8-46 (200)
146 cd05018 CoxG Carbon monoxide d 33.8 21 0.00046 32.6 1.3 27 650-676 5-31 (144)
147 cd07817 SRPBCC_8 Ligand-bindin 33.8 30 0.00064 31.5 2.2 28 649-676 3-30 (139)
148 TIGR02449 conserved hypothetic 33.7 1.5E+02 0.0033 25.5 6.2 39 200-259 11-49 (65)
149 cd08862 SRPBCC_Smu440-like Lig 33.5 30 0.00066 31.4 2.2 30 647-676 2-31 (138)
150 cd08901 SRPBCC_CalC_Aha1-like_ 33.3 25 0.00055 32.9 1.7 27 648-674 2-28 (136)
151 PF04967 HTH_10: HTH DNA bindi 33.3 48 0.001 27.2 3.0 37 141-177 1-39 (53)
152 cd08909 START_STARD13-like C-t 33.2 86 0.0019 32.5 5.7 54 613-676 27-80 (205)
153 cd07823 SRPBCC_5 Ligand-bindin 32.0 4.3E+02 0.0093 24.7 10.7 29 401-429 3-31 (146)
154 KOG3119 Basic region leucine z 31.4 1.2E+02 0.0026 32.6 6.7 24 240-263 231-254 (269)
155 PRK06266 transcription initiat 31.2 47 0.001 33.6 3.3 35 221-255 136-170 (178)
156 cd07814 SRPBCC_CalC_Aha1-like 30.9 28 0.00062 31.6 1.6 28 649-676 3-30 (139)
157 cd07825 SRPBCC_7 Ligand-bindin 30.7 35 0.00075 31.6 2.2 26 650-675 4-29 (144)
158 PF12824 MRP-L20: Mitochondria 30.2 1.7E+02 0.0038 29.3 7.0 46 139-186 84-129 (164)
159 TIGR03752 conj_TIGR03752 integ 29.6 1.4E+02 0.0029 34.9 6.9 26 235-260 113-138 (472)
160 PRK03975 tfx putative transcri 29.5 47 0.001 32.6 2.9 46 139-190 5-50 (141)
161 cd07812 SRPBCC START/RHO_alpha 29.3 37 0.00079 29.4 2.0 27 650-676 3-29 (141)
162 cd07818 SRPBCC_1 Ligand-bindin 29.3 56 0.0012 30.5 3.3 31 648-678 4-34 (150)
163 TIGR00219 mreC rod shape-deter 29.3 88 0.0019 33.9 5.2 44 200-261 63-107 (283)
164 smart00340 HALZ homeobox assoc 28.5 52 0.0011 26.0 2.3 27 193-219 2-28 (44)
165 PF04545 Sigma70_r4: Sigma-70, 28.5 33 0.00072 26.8 1.4 38 140-182 4-41 (50)
166 cd06171 Sigma70_r4 Sigma70, re 28.4 19 0.00042 26.9 0.0 42 140-186 10-51 (55)
167 KOG0288 WD40 repeat protein Ti 28.3 1.4E+02 0.003 34.2 6.6 118 390-529 228-348 (459)
168 KOG3156 Uncharacterized membra 26.2 2E+02 0.0044 30.2 6.8 48 194-261 92-139 (220)
169 cd07820 SRPBCC_3 Ligand-bindin 25.3 46 0.00099 31.0 2.0 26 650-675 3-28 (137)
170 PF07106 TBPIP: Tat binding pr 25.0 2.2E+02 0.0047 28.1 6.8 71 178-260 56-131 (169)
171 cd07822 SRPBCC_4 Ligand-bindin 24.7 56 0.0012 29.5 2.3 27 650-676 4-30 (141)
172 PF07334 IFP_35_N: Interferon- 24.2 83 0.0018 27.9 3.1 19 242-260 4-22 (76)
173 KOG3119 Basic region leucine z 24.0 40 0.00086 36.3 1.4 27 238-264 222-248 (269)
174 PRK00888 ftsB cell division pr 23.4 85 0.0018 29.1 3.3 37 181-217 26-62 (105)
175 PRK13729 conjugal transfer pil 23.1 1.9E+02 0.0041 33.8 6.6 56 186-255 66-121 (475)
176 cd00569 HTH_Hin_like Helix-tur 22.5 79 0.0017 20.9 2.3 37 140-181 5-41 (42)
177 PF07151 DUF1391: Protein of u 22.0 43 0.00093 26.6 0.9 8 552-559 38-45 (49)
178 PF08961 DUF1875: Domain of un 21.5 31 0.00067 36.2 0.0 32 198-250 131-162 (243)
179 cd07824 SRPBCC_6 Ligand-bindin 21.4 61 0.0013 30.5 2.0 27 650-676 5-31 (146)
180 KOG3755 SATB1 matrix attachmen 21.3 19 0.00042 42.5 -1.6 61 133-193 691-758 (769)
181 cd08898 SRPBCC_CalC_Aha1-like_ 21.2 67 0.0014 29.6 2.2 28 649-676 4-31 (145)
182 cd01106 HTH_TipAL-Mta Helix-Tu 20.7 2.3E+02 0.0049 25.6 5.5 36 138-186 36-71 (103)
183 PF10845 DUF2576: Protein of u 20.7 1.3E+02 0.0028 24.2 3.2 31 230-260 3-33 (48)
184 PF05494 Tol_Tol_Ttg2: Toluene 20.3 1.4E+02 0.003 29.4 4.3 56 434-494 85-140 (170)
185 PRK00118 putative DNA-binding 20.2 1.8E+02 0.0039 27.1 4.7 47 140-191 17-63 (104)
186 KOG4343 bZIP transcription fac 20.1 1.2E+02 0.0025 35.9 4.1 19 239-257 317-335 (655)
187 PRK10884 SH3 domain-containing 20.1 2.9E+02 0.0063 28.7 6.7 48 188-256 124-171 (206)
188 PHA03162 hypothetical protein; 20.1 2.9E+02 0.0062 27.0 6.1 27 196-222 13-39 (135)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=3.7e-91 Score=708.40 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 005143 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (712)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (712)
|++|++||++||+||++|||+++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999988777 6999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCcC
Q 005143 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (712)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~ 496 (712)
||+++|.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 497 ~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
.+..+.++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 3333458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.75 E-value=8.5e-18 Score=167.05 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005143 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (712)
Q Consensus 342 ~lA~~Am~El~~la~~~eplWi~~~--~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (712)
|+|.++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 6899999999999999999998855 332 2233333221 1246678899999999999999999998
Q ss_pred h-hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCcCCC
Q 005143 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (712)
Q Consensus 420 ~-~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~ 498 (712)
. +|-.++- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 9998854 57888888854 678888899999999999 9999999999999999999999998654433
Q ss_pred CCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 499 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 499 ~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--++.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 12358999999999999999999999999999999999999999999999999999999999988865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=3.1e-16 Score=156.28 Aligned_cols=202 Identities=34% Similarity=0.526 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhh-HHHHhcCh
Q 005143 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (712)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~--~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~-LVe~lmD~ 419 (712)
-|+.++.|+++++..++..|....+ .+ ..|.+.+ .+.+....+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998664 22 1111211 1223567899999999999997 55666665
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCcCCCC
Q 005143 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 499 (712)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~ 499 (712)
.+...+-..+..+++++.++.+ ..|......+.. +| +..|||.++|++++.++|.|+|+..|++.-.. +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 3333333334568888888743 233333333333 35 55699999999999999999999999986432 21
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 005143 500 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (712)
Q Consensus 500 ~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 567 (712)
.+.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23589999999999999999999999999999999988889999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.68 E-value=4.8e-17 Score=171.91 Aligned_cols=68 Identities=32% Similarity=0.446 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
...+|||+|..||..|+.+||+.|++++|++..+|++||+.|+|++.||||||||||-|.||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35577788888999999999999999999999999999999999999999999999999999877653
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.64 E-value=1.7e-16 Score=159.34 Aligned_cols=80 Identities=33% Similarity=0.508 Sum_probs=74.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHh
Q 005143 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 138 Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (712)
+.|||.+|+..||+.|+...+....++..||++|||.+|||+|||||||||||.++.+.++..|+.+.+.|+.+|..+..
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~ 133 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQS 133 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999987665543
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.60 E-value=5.8e-16 Score=165.53 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
..+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 347788899999999999999999999999999999999999999999999999999999987765
No 7
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.59 E-value=6.6e-16 Score=150.65 Aligned_cols=65 Identities=34% Similarity=0.478 Sum_probs=62.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
+.||.||.||.+|+..||..|+.+.|....+|++||+.|+|++.||||||||||+|.||++.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999888753
No 8
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.59 E-value=1.5e-15 Score=151.48 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
.+.+|||.|+.|+..|+..||..|+..+|++..+|.-||++|.|++.||||||||||.||||+...
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 345788999999999999999999999999999999999999999999999999999999987643
No 9
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.56 E-value=6.6e-16 Score=161.84 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
.+.||.|+.||..|+.+||+.|+.++|++...|.|||..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45788999999999999999999999999999999999999999999999999999999866554
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.56 E-value=3.8e-15 Score=157.69 Aligned_cols=65 Identities=38% Similarity=0.444 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
++.||||.-+|+.|+.+||+.|..|.|.+.+.|.+|++.|+|++|||||||||||.|+||..++.
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 55678888999999999999999999999999999999999999999999999999999987543
No 11
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.56 E-value=2.2e-15 Score=151.98 Aligned_cols=72 Identities=28% Similarity=0.378 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhhhh
Q 005143 128 AADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENS 199 (712)
Q Consensus 128 ~~~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~ 199 (712)
.++.+|.||.||.++.-||+.|.+.|+++.|+-..+|.+||..|||+..||||||||||.|.||..+..+..
T Consensus 116 Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~ 187 (245)
T KOG0850|consen 116 NGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGP 187 (245)
T ss_pred CCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCc
Confidence 456677789999999999999999999999999999999999999999999999999999999988855444
No 12
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.55 E-value=1e-15 Score=137.26 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.+|.||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.|||..
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566888999999999999999999999999999999999999999999999999999997553
No 13
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.54 E-value=4.1e-15 Score=151.58 Aligned_cols=70 Identities=31% Similarity=0.430 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhhhhHHHHhhH
Q 005143 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (712)
Q Consensus 137 ~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~ 206 (712)
-||.||..|+.+||+.|++.+||+...|+-||.++.|.+.+|+|||||||+||||+.++.-.....+|+-
T Consensus 144 ~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 144 FRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 3788999999999999999999999999999999999999999999999999999999887766665543
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.52 E-value=7.6e-14 Score=143.18 Aligned_cols=68 Identities=31% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
+-+.|-|.|.++|..|..+||+.|..++|.++..+.|||.-|+|++|||||||||||+|+||.++++-
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 33456678889999999999999999999999999999999999999999999999999998877653
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.49 E-value=2.5e-14 Score=142.16 Aligned_cols=65 Identities=38% Similarity=0.505 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
+.+..||.|+.||.+|+..||+.|++..|.+..+|.+++..|.|++.||||||||||+|.||.|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 45556889999999999999999999999999999999999999999999999999999998664
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.45 E-value=3.1e-14 Score=115.13 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
||+|+.||.+|+..||..|..++||+..+++.||.+|||++.||++||||||+++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 17
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.44 E-value=6.3e-14 Score=140.95 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
..+|.||.||.||..|+++||.+|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3567789999999999999999999999999999999999999999999999999999999887664
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.42 E-value=9.3e-13 Score=134.65 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
||.|+.||.+|++.|...|++++|..+..|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 57789999999999999999999999999999999999999999999999999999754
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.32 E-value=6.4e-13 Score=138.25 Aligned_cols=66 Identities=30% Similarity=0.366 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
...+-||.||.||.+||..||+.|-+..|.+...|.+||..|+|++..|||||||||+|+|||..-
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 344568899999999999999999999999999999999999999999999999999999986543
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.28 E-value=4.5e-12 Score=104.14 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCC----CCHHHHHHHHHhhccccceeeeecccch
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 186 (712)
+||.||.||++|+..||..|+.++| |+...+.+||..+||++++|||||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 21
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.28 E-value=3e-12 Score=134.26 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.|+||.|+.||.+|+++||..|+++.||+...|++||...+|++.+|+|||.|||+||||+.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 47788899999999999999999999999999999999999999999999999999999643
No 22
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.27 E-value=2.3e-12 Score=125.53 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
..+++|+|.|.+|+.+|++.|+.++||+...|..|+..|+|+++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778999999999999999999999999999999999999999999999999998776544
No 23
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.27 E-value=1.9e-12 Score=103.81 Aligned_cols=56 Identities=45% Similarity=0.788 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
++.|++++.+|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35567799999999999999999999999999999999999999999999998864
No 24
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.27 E-value=2.3e-12 Score=103.89 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 136 R~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
+++..++.+|+..||..|..++||+..++..||.++||++.||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.25 E-value=7.3e-13 Score=127.71 Aligned_cols=66 Identities=33% Similarity=0.440 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
-+++|-|+.|+..|+..||+.|+..+|.+..+|.+||..|+|++.|||.||||||+|.||++++.+
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999999999999999999999999999999998877654
No 26
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.24 E-value=1.5e-10 Score=112.52 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=136.9
Q ss_pred HHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcChhhhhhh
Q 005143 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEM 425 (712)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~ 425 (712)
.|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ....-|..++|-.++.+++++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4567888887766 6898754432 122244443221 3467788999999999999999994433322
Q ss_pred cccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCcCCCCCCCccc
Q 005143 426 FPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN 505 (712)
Q Consensus 426 Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~ 505 (712)
.+ .+.+++.++.++. ...++|..+..+.| +..|||.++|++.+.++|.++|+..|+|.-. .+..+.++|
T Consensus 68 ~~-~~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 68 DK-NFEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred hh-cceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 22 2344566665542 26889999999999 9999999999999999999999999998741 122224799
Q ss_pred eeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 005143 506 CRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (712)
Q Consensus 506 ~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 563 (712)
++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 137 ~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999886533 445656666666666666644
No 27
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.19 E-value=1.3e-11 Score=133.67 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
..|||||||.|+......||++|.+|++|+..++.+||.+|+|++..|+|||+|||.|+||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999644
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.14 E-value=1.4e-11 Score=123.52 Aligned_cols=66 Identities=33% Similarity=0.455 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
++.++|..|..|+..||..||+.|++.+|+-..+|.+||..+|+++.||+|||||||+||||+..-
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 345677788889999999999999999999999999999999999999999999999999987643
No 29
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.12 E-value=5.7e-11 Score=123.19 Aligned_cols=73 Identities=27% Similarity=0.410 Sum_probs=65.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhhhhHHHHhh
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEN 205 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en 205 (712)
..||.|+.+|..|++.|...|+..++|-...|++|+.++||.-|.|||||||||+|+||.++..-...+-|-.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyf 238 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYF 238 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999999999988776665555433
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.03 E-value=9.1e-09 Score=105.06 Aligned_cols=200 Identities=13% Similarity=0.181 Sum_probs=146.4
Q ss_pred HHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeE-EechhhHHHHhcCh---hh
Q 005143 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---NR 421 (712)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV-~m~~~~LVe~lmD~---~~ 421 (712)
+.+++|+.++..+ .-|-...+.. . .++|.+.. .+...-.-|..+++ ...+..+.+.|+|. .+
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~~--g-------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNKN--N-------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcCC--C-------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 7888999999654 4798754332 1 23332221 22333445666655 46888999999996 56
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCcCCCCCC
Q 005143 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAP 501 (712)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~ 501 (712)
|-..+ ..++.++.+.. ...++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-. .+...
T Consensus 76 Wd~~~----~e~~~ie~~d~--------~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~~ 140 (222)
T cd08871 76 WDSNM----IESFDICQLNP--------NNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPRK 140 (222)
T ss_pred hhhhh----ceeEEEEEcCC--------CCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCCC
Confidence 66652 23666666542 23688888888888 8999999999998776 88899999987432 22223
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 005143 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 578 (712)
Q Consensus 502 ~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerla~~~~~~ip~ 578 (712)
.++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+-.++..|+++|+.....++.+-|.
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999987765 443 34666667777899999999999999988877664
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.93 E-value=3.1e-08 Score=100.07 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD- 418 (712)
+-.||..|.+|++++.. .+.-|-...+.. +.++|.+. ...+..-.-|..+.|..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~----~~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKP----STEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEec----CCCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 35788899999999987 447897743221 11222221 1122222357888888899999999998
Q ss_pred ----hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhc-ccccccCceeEEEeeeceecCCeEEEEEEecCC
Q 005143 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (712)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v-~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~ 493 (712)
+.+|... +..+..++-|... ..++|..+-- +.++|..|||.++||.++.++|.++|+-+|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 4557777777521 2445553221 235799999999999999999999999999864
Q ss_pred CcCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 005143 494 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (712)
Q Consensus 494 ~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 565 (712)
-. .+..+.++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 32 22223589999999999999886 57899999999987632 33 45677777777778888887774
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.93 E-value=2e-08 Score=101.64 Aligned_cols=196 Identities=15% Similarity=0.221 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHH-hcC
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 418 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~-lmD 418 (712)
...+++.|++|++.+.. ++-|-...+.. +...+|.+.. .| ..-.-|..++|-..+..+++. |.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57889999999999954 55897744221 0112332221 11 114578889999999998764 555
Q ss_pred h---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcc-cccccCceeEEEeeeceecCCeEEEEEEecCCC
Q 005143 419 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (712)
Q Consensus 419 ~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~-SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~ 494 (712)
. .+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 4 5676662 2245555543 2224555333222 3589999999999999866 6799999998732
Q ss_pred cCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005143 495 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (712)
Q Consensus 495 ~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (712)
. .+..+.++|+...++|++|+++++ +.|+|||+-|++..-+ +|.- ++++.+.-+.-.+++.|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122235899999999999999987 6899999999987744 4432 377888888889999999998753
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.93 E-value=8.8e-10 Score=111.89 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4466888999999999999999999999999999999999999999999999999999997654
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.71 E-value=2.2e-07 Score=94.67 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (712)
...|+++|++|++++-+ +.-.|-.-.++. ..+ ++.+. ...+.+---|..|+|-.++.+|+|.|.|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~-~~~--------v~~k~----~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSK-KIT--------VSWKP----SRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCC-ceE--------EEEEE----cCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 35789999999999977 567897643332 111 11110 12334456788999999999999999987
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh-cccccccCceeEEEeeeceecCCeEEEEEEecCCCcCCC
Q 005143 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (712)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~-v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~ 498 (712)
+...+-=+ .+..++.++-|.. ...+.|.-++ .+-++|-+|||..+||.++.++|.++|..+|++.-.- |
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id~--------~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRIDS--------DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeCC--------CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 64443222 3455667666652 2245564443 4557899999999999999999999999999874321 2
Q ss_pred CCCCccceeecCCcceEeecCCC--ccEEEEEEeeeecc
Q 005143 499 GAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDE 535 (712)
Q Consensus 499 ~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~ 535 (712)
..+.++|+.-.|+||+|++.+++ +|++||+-+++..-
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG 177 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRG 177 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCC
Confidence 22358999999999999999874 89999999977653
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.66 E-value=1.3e-08 Score=111.47 Aligned_cols=64 Identities=31% Similarity=0.532 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.++.+|.|+.|+..|+..||+.|+.++||+...|++||++.++++..|++||+|||+|++|+..
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 4455677889999999999999999999999999999999999999999999999999997553
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.60 E-value=1.2e-06 Score=89.32 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (712)
..+++++|+++++.+-+ ++.-|-...+.. +.++|.+... .+..=.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999975 677897643321 2233322110 111112678889999999999999976
Q ss_pred -----hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc---cccCceeEEEeeeceecCCeEEEEEEec
Q 005143 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (712)
Q Consensus 420 -----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SP---Lvp~Re~~fLRyckq~~~g~waVvDvSl 491 (712)
.+|-..+ ..++.++-|.. ...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|+
T Consensus 69 ~~~~r~~W~~~~----~~~~vle~id~--------~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQNV----KDFEVVEAISD--------DVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhcc----ccEEEEEEecC--------CEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 5888772 33555555551 1223333 44555 6999999999999999999988777676
Q ss_pred CCCcCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 005143 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (712)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 565 (712)
..-. -|..+.++|+...|+|++|...++ +.|+|||+-|++.- ..+| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5421 111225899999999999999964 58999999888764 2354 34555444334444555665543
No 37
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.60 E-value=2.9e-08 Score=103.50 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
..|||+|+.+..-+.+.||++|...+.|+.+.+..+|++|.|.+..|+|||+|.|.|.||..
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 45688899999999999999999999999999999999999999999999999999999744
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.50 E-value=1.4e-06 Score=87.95 Aligned_cols=167 Identities=13% Similarity=0.246 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhcCCCCCeeeccC-CCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh-hhh
Q 005143 345 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (712)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~-~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~-~~W 422 (712)
+.+.++|++-+...+.-|.-..+ .+ .+| |.|.. +.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999987432 23 222 22222 23445566788888888899999877765 356
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeece-ecCCeEEEEEEecCCCcCCCCCC
Q 005143 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 501 (712)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq-~~~g~waVvDvSld~~~~~~~~~ 501 (712)
-.. +..++.++.|+. ...+.|..+..|-| |++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id~--------~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLDE--------DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEecC--------CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 665 234666666642 23567777777777 59999999998875 67889999999986321111 1
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccccccc
Q 005143 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQ 540 (712)
Q Consensus 502 ~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 540 (712)
.++|+..+++|++|++..+|.|+|||+-|++.-- .+|.
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCc
Confidence 4899999999999999999999999999998642 3444
No 39
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.48 E-value=2.6e-06 Score=86.91 Aligned_cols=129 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred CCceeeeccceeEEechhhHH-HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeE
Q 005143 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 471 (712)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~ 471 (712)
+...-+-|....|--.+..++ .+|.++..|-..|-. +++++.|. +...+.|--+.-+-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~----~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQ----WKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcce----eEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 334456676666666666664 466677888877543 77777766 2235566666666675 999999
Q ss_pred EEeeecee-cCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 005143 472 FLRFCKQH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (712)
Q Consensus 472 fLRyckq~-~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (712)
.+|+-++. ++|.++|+..|++.....+ ..++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 99997654 6999999999999764322 147999999999999999999999999999987543
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.46 E-value=1.2e-06 Score=101.94 Aligned_cols=129 Identities=17% Similarity=0.288 Sum_probs=103.1
Q ss_pred eeeccceeEEechhhHHHHhcChh----hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh--cccccccCcee
Q 005143 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 470 (712)
Q Consensus 397 EASR~sgvV~m~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~--v~SPLvp~Re~ 470 (712)
-+=|+.|||-..+.+|.|.+|+.+ +|=.. +..++.|+.|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999777 55544 45588888774 55567776654 44566777999
Q ss_pred EEEeeeceecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecC--C--CccEEEEEEeeeeccccc
Q 005143 471 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 538 (712)
Q Consensus 471 ~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 538 (712)
+++||-++.+||+++|+=+|+..-...+ .+.++|.+..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP-~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGP-QPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCC-CCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 9999999999999999999987543212 23589999999999999964 3 379999999999988864
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.39 E-value=3.3e-06 Score=86.08 Aligned_cols=193 Identities=12% Similarity=0.197 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 005143 339 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (712)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~~--~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (712)
-...++.+|++|++++.+ .+.-|-... +.| ..+ |.+.||.. | -+-|.-++|..++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g--i~v----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVAENG--DKV----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEecCCC--CEE----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 356889999999999986 666897642 222 111 23333221 1 45566678999999999555
Q ss_pred c-Ch---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeEEEeeeceecCCeEEEEEEe
Q 005143 417 M-DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVS 490 (712)
Q Consensus 417 m-D~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SP--Lvp~Re~~fLRyckq~~~g~waVvDvS 490 (712)
. |. .+|... +.-.+||..-.. ..-++|. ..++.| +|..|||..+|+.++..++. +++..|
T Consensus 69 ~~d~e~~~~W~~~-------~~~~~vl~~id~-----~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s 134 (209)
T cd08905 69 VDRMEQMGEWNPN-------VKEVKILQRIGK-----DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMA 134 (209)
T ss_pred Hhchhhhceeccc-------chHHHHHhhcCC-----CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEe
Confidence 5 53 466665 344444443321 1235664 666766 79999999999999986654 555677
Q ss_pred cCCCcCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 491 ld~~~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
.+.-. -+..+.++|.+..+.|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 135 ~~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 135 THFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred ecCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 55321 121225899999999999999988 9999999999987655 443 45666666666778888877754
No 42
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.23 E-value=6.9e-07 Score=93.05 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 141 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
|...-...|..+|.+++||+..++.+||+.+||+..||-.||+|||.++|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 44566789999999999999999999999999999999999999999998
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.22 E-value=2.1e-05 Score=79.97 Aligned_cols=191 Identities=14% Similarity=0.159 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCC-CCCCceeeeccceeEEechhhHHHHhcC
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~sgvV~m~~~~LVe~lmD 418 (712)
...+|.+.-+++++--+.++-.|-.-.+.+ ..+. ..+ .+-|.+---|.-|+|--....|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~-~~~v-------------~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSK-DVTV-------------WRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCC-CEEE-------------EEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 356788888889998777999997633222 1111 112 2244444567778888889999999998
Q ss_pred ---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCCc
Q 005143 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 495 (712)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~~ 495 (712)
+.+|-+. |..++.++-|.. +++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 69 ~~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 4589876 455666666552 23222244455677799999999999999999998 77788887543
Q ss_pred CCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 005143 496 ETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (712)
Q Consensus 496 ~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 563 (712)
. .+.++|....|+||++.+++|| .|+.||+-++++.-+ |=+-++++.++=.-=-....|++
T Consensus 137 ~---ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk 199 (202)
T cd08902 137 A---RPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKK 199 (202)
T ss_pred C---CCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1258999999999999999988 677889999776643 33445544444332233444443
No 44
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.22 E-value=3.2e-05 Score=79.03 Aligned_cols=195 Identities=10% Similarity=0.176 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeec-cC-CCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HH
Q 005143 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (712)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~-~~-~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~ 415 (712)
-....+.+||+++.++... +.-|.-. .+ .| . ++|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g-i---------~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG-D---------TVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC-C---------EEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567899999999999765 4579852 22 33 1 23322211011233 55667777888885 68
Q ss_pred hcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeEEEeeeceecCCeEEEEEEecCC
Q 005143 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (712)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SP--Lvp~Re~~fLRyckq~~~g~waVvDvSld~ 493 (712)
|.|.+...+=.+.+ ..++.++-++. .--+.| ++-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88887555444443 23455444441 123456 5555554 6899999999999998888 5777788764
Q ss_pred CcCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 005143 494 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (712)
Q Consensus 494 ~~~~~~~~~~~~~rr~PSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 565 (712)
-. -|..+.++|.+..++|++|++. .+|.|+|||+-|++.-- .+| +.|++..++=..--.+..|.++.
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1222258999999999999985 57799999999998765 333 24565555544555566665554
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.07 E-value=4e-05 Score=78.12 Aligned_cols=183 Identities=15% Similarity=0.221 Sum_probs=124.4
Q ss_pred HHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChh---hhhhhcc
Q 005143 352 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 427 (712)
Q Consensus 352 ~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~---~W~~~Fp 427 (712)
+..-+.+.+-|-...+.. + .++|.+.. .+...-.=|..+++. +.+..|+++|+|.+ +|...
T Consensus 17 ~~~~~~~~~~W~l~~~~~--~-------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-- 81 (207)
T cd08910 17 LQQPALDGAAWELLVESS--G-------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY-- 81 (207)
T ss_pred hcCCCCCCCCeEEEEecC--C-------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH--
Confidence 444455667898765432 1 12332221 233333677778887 78999999999965 56665
Q ss_pred cccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeec-eecCC--eEEEEEEecCCCcCCCCCCCcc
Q 005143 428 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEG--VWAVVDVSIDTIRETSGAPAFV 504 (712)
Q Consensus 428 ~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyck-q~~~g--~waVvDvSld~~~~~~~~~~~~ 504 (712)
++. .++.++. + ..++|-.+..|-| |..||+.++|-.. ...+| .|+|+..|++.- .-+....++
T Consensus 82 -~~~---~~~~~~~-------~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~V 147 (207)
T cd08910 82 -VKE---LYEKECD-------G-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVI 147 (207)
T ss_pred -HHh---heeecCC-------C-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCE
Confidence 221 2333321 2 2578888999999 9999999996444 33344 689888887632 112222589
Q ss_pred ceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 005143 505 NCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (712)
Q Consensus 505 ~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 567 (712)
|....-+|++|++..++.|+||++-|++-- ..+|. -+++.....+...|+..|+..|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 999999999999998889999999998852 23443 267777888899999999888863
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.97 E-value=0.00011 Score=74.85 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (712)
+++=+...|+|+.+..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|+|..+...++++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566888999988876 55798754331 123332211 1222467788889999999999999999
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEE-eeecee-cCCeEEEEEEecCCCcC-
Q 005143 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 496 (712)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fL-Ryckq~-~~g~waVvDvSld~~~~- 496 (712)
+...+-+|.. ..++.++.++- .-++.|..+-+|-| |..||+.+. +.|.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8777777763 33455554432 12567767777777 888999975 567777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 497 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 497 -------~~~~~-~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
-|..+ .++|....-+|++|+++++|.|+|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12223 5789999999999999999999999999966332226553 3444444446667777777765
No 47
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.95 E-value=4.7e-06 Score=86.29 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+|+|..|++.-.++|..+|. .+|||+...+++||++++++..||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 56667899999999999994 589999999999999999999999999999999999744
No 48
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.89 E-value=0.00014 Score=74.31 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeec-cCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-hhh
Q 005143 344 ALAAMDELVKMAQTDEPLWIRS-FEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNR 421 (712)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~-~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD-~~~ 421 (712)
-+..+++|++.|..--=-|+.- ...+ .|+- |.| +..|-..-.=|....+.-.+.+|+..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Eec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 4477888888887555566651 1111 2221 112 23344445566666777778888855555 567
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeec-eecCCeEEEEEEecCCCcCCCCC
Q 005143 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (712)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (712)
|-.. +..++.++-|+. .-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .+
T Consensus 78 Wd~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-- 141 (204)
T cd08908 78 WDVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-- 141 (204)
T ss_pred HHHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--
Confidence 8777 334677776662 11467888888988 7999999997665 478999999999988532 11
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 005143 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 534 (712)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d 534 (712)
...+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 2368999999999999999999999999999753
No 49
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.84 E-value=0.00022 Score=70.91 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=103.8
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeec
Q 005143 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (712)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyck 477 (712)
.-|.+++|-.++.++.+++.|.+.|.+-=|. +...+||.....+ -.++|..+..+=| |..|||.++|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~~-----~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDDN-----ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCCC-----cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 4588888999999999999999988766555 3444555533211 2445555555544 7899999876443
Q ss_pred ee-cCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHH
Q 005143 478 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 556 (712)
Q Consensus 478 q~-~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~r 556 (712)
.. ++|..+|.=.|.+.. -+....++|++.+-+|+.|++.++|.|+||++-|++..-+...-+.+.+ +.=+..+
T Consensus 112 ~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~----~~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAF----AKDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHH----HHHHHHH
Confidence 33 367777766666542 1212247899999999999999999999999999888644333343433 3345667
Q ss_pred HHHHHHHHH
Q 005143 557 WVATLQRQC 565 (712)
Q Consensus 557 WlatLqR~c 565 (712)
++++|+++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888887665
No 50
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.74 E-value=0.0002 Score=73.25 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=90.6
Q ss_pred CCCCceeeeccceeEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccccc-cc
Q 005143 391 PNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPL-VP 466 (712)
Q Consensus 391 ~~g~~~EASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPL-vp 466 (712)
..+|.. -++|...+.+|++.|.|.. +|-.+ ..+.+||..-. ....++|.....|=|+ ++
T Consensus 44 ~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~ 106 (205)
T cd08874 44 YHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQ 106 (205)
T ss_pred cceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCC
Confidence 356664 3477888999999999876 56665 55566666332 2335677666655555 39
Q ss_pred CceeEEEeeeceecCCeEEEEEEecCC-CcCCCCCCCccceeecCCcceEeec---CCCccEEEEEEeeeecccccc
Q 005143 467 VREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 539 (712)
Q Consensus 467 ~Re~~fLRyckq~~~g~waVvDvSld~-~~~~~~~~~~~~~rr~PSGclIq~~---~nG~skVtwVeH~e~d~~~vh 539 (712)
.|||..+|-....+++.. |.=.|++. ..+.. ...++|.+.+++|++|+++ ++|.|+||.+-|+|---..||
T Consensus 107 ~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 107 PRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999995555555544 66677765 22211 1148999999999999999 999999999999987533344
No 51
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.64 E-value=0.00033 Score=71.52 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeeccCC-CcccccChhhhhhhcCCCCCCCCCCCceeeeccceeE-EechhhHHHHhcChhh
Q 005143 344 ALAAMDELVKMAQTDEPLWIRSFEG-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNR 421 (712)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~-~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV-~m~~~~LVe~lmD~~~ 421 (712)
-+..+++|++-+....=-|+...+. + .|+- .+.-++ |...--=|.+.-| ...+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~-vev~-----~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDN-TELA-----CKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCC-cEEE-----EEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 4478889999998888889873322 2 3333 111111 1111111222222 2244556699999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeec-eecCCeEEEEEEecCCCcCCCCC
Q 005143 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (712)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (712)
|=+. +-..++|+.|.-- +...|. -+..| +.+|.|+|.+||.-+ .+..|.-+|+.+|++....-+ .
T Consensus 78 WD~~----m~e~~~Ie~Ld~n-----~dI~yY---~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~ 143 (205)
T cd08907 78 WDED----LLHSQVIEALENN-----TEVYHY---VTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-E 143 (205)
T ss_pred hhHH----HHhhhhheeecCC-----CEEEEE---EecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-C
Confidence 9987 3458888888621 122222 12223 568999999999864 467789999999998654332 1
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 005143 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (712)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (712)
. -+|+--+=|||||++++.|.|+||-|-|++..-+
T Consensus 144 ~-gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 144 A-GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred C-CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 2 3899999999999999999999999999987544
No 52
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.62 E-value=1.1e-05 Score=61.83 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=28.9
Q ss_pred hCCCCCHHHHHHHHHhhccccceeeeecccchhH
Q 005143 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (712)
Q Consensus 155 ~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (712)
.+|||+..++++||+++||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999998864
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.51 E-value=0.0028 Score=64.59 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=115.5
Q ss_pred eeeccceeE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEE
Q 005143 397 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (712)
Q Consensus 397 EASR~sgvV-~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~f 472 (712)
-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|.... +-...++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDE----KSGTEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecC----CCCcEEEEEEEECCCcC-CCceEEE
Confidence 456777777 569999999999975 56665 33344444211 10147899999999988 8999999
Q ss_pred EeeeceecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccch
Q 005143 473 LRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (712)
Q Consensus 473 LRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 550 (712)
.|-..+..+|..+|+=-|++.-. .+.. .++|.+..=||++|++. .+|.++|+++-|.+- ...+|. -|++...
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~ 191 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAV 191 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHH
Confidence 98777777899988888877521 1111 37999999999999999 789999999999863 224554 5788889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 005143 551 GFGAQRWVATLQRQCEC 567 (712)
Q Consensus 551 afGA~rWlatLqR~cer 567 (712)
..|+-.||..|.+.|..
T Consensus 192 ~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 192 KRGMPGFLKKLENALRK 208 (209)
T ss_pred HhhhHHHHHHHHHHHhc
Confidence 99999999999998853
No 54
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.48 E-value=7e-05 Score=84.84 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
+..+.||.|.+||..|...|..+|+++++|+.+..+.|+.+|+|...-|..||-|-|.|.+
T Consensus 416 ~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 416 KMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3445678899999999999999999999999999999999999999999999999888753
No 55
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.46 E-value=9e-05 Score=75.35 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
..+.++.|+.++..|+..++..|...++|+...+++|+..++++++.+++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 4566778889999999999999999999999999999999999999999999999999997654
No 56
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.36 E-value=0.0055 Score=63.98 Aligned_cols=195 Identities=13% Similarity=0.195 Sum_probs=121.9
Q ss_pred HHHHHHHHHhhcC--CCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChhh
Q 005143 345 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (712)
Q Consensus 345 ~~Am~El~~la~~--~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~~ 421 (712)
.+-.+|.+++|+. ++.-|--..+.+ + .++|.+... ..|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~--g-------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEG--E-------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCC--c-------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 555797644332 1 133433221 1244445678888888 889999999999874
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC-------CeEEEEEEecCCC
Q 005143 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 494 (712)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~-------g~waVvDvSld~~ 494 (712)
..+=... +..++.++-|+. ...+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|++.-
T Consensus 78 r~~Wd~~-~~~~~vie~l~~--------~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT-LENFHVVETLSQ--------DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh-hheeEEEEecCC--------CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4333222 222444444441 22466777778888 69999999999998876 7899999998743
Q ss_pred cCCCCCCCccceee---cCCcceEee------c--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 005143 495 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (712)
Q Consensus 495 ~~~~~~~~~~~~rr---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 563 (712)
. .|..+.++|.+. +=.|.+|.+ + .||.|+||++-|++---+.-. .+++.....++-.+|..|--
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~----wvvn~~~k~~~P~~l~~~~~ 222 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPA----SVLRAVYKREYPKFLKRFTS 222 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccH----HHHHHHHHhhchHHHHHHHH
Confidence 2 122224677765 222333332 1 588999999999975443322 34555556667777777755
Q ss_pred HH
Q 005143 564 QC 565 (712)
Q Consensus 564 ~c 565 (712)
++
T Consensus 223 ~~ 224 (235)
T cd08872 223 YV 224 (235)
T ss_pred HH
Confidence 44
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.32 E-value=0.003 Score=64.36 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=110.1
Q ss_pred eeccceeE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEE
Q 005143 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (712)
Q Consensus 398 ASR~sgvV-~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fL 473 (712)
.=|..+++ ...+..+++.|+|.+ +|-.. +...++|.-.. +-...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDP----ETGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccC----CCCCEEEEEEEECCCCC-CCccEEEE
Confidence 45665544 788999999999986 56665 34455555321 11236789999999996 89999998
Q ss_pred eeeceec-CCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecC---CCccEEEEEEeeeeccc-cccccchhhhcc
Q 005143 474 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIIS 548 (712)
Q Consensus 474 Ryckq~~-~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~lyrpl~~S 548 (712)
|-..+.. +|.++|+-.|++.-. .+....++|.....+|++|++.. ++.|+|+++-|. |.. .+|.- |++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8776664 567888888887421 11122489999999999999984 677999988885 666 36653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 005143 549 GMGFGAQRWVATLQRQCEC 567 (712)
Q Consensus 549 g~afGA~rWlatLqR~cer 567 (712)
-...++-.||..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777888999999888753
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.88 E-value=0.0067 Score=63.47 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCceeeeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEE
Q 005143 393 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (712)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~f 472 (712)
.|++|+. |...+.+|++.|.|.+...+=.+- +...++|..-. ....++|..+..|. -+..|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~~----~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDPH----GRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhhc----ccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEE
Confidence 4556654 788999999999998754443332 45555555221 12245665555554 478999999
Q ss_pred EeeeceecCC--eEEEEEEecC-CCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeee
Q 005143 473 LRFCKQHAEG--VWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 532 (712)
Q Consensus 473 LRyckq~~~g--~waVvDvSld-~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e 532 (712)
+|+-++..++ ..+|.=.|+. ... |..+.++|.+.+=.|++|++.++|.|+||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 9999984433 3777666655 221 11225899999999999999999999999999986
No 59
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.22 E-value=0.041 Score=57.86 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=81.9
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeEEEeeecee
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQH 479 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SP--Lvp~Re~~fLRyckq~ 479 (712)
-++|...+..|++.|.|.+...+=.+. +...+||...... . . +|-.. -+.+ -|..|||-.++...+.
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~~----~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~~~ 154 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDED----D-A-IYHVT-SPSLSGHGKPQDFVILASRRKP 154 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCCC----c-E-EEEEe-cCCCCCCCCCCeEEEEEEEEec
Confidence 368888999999999998755544333 3444444433221 1 1 22221 1122 5889999999888665
Q ss_pred c-CC-eEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005143 480 A-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (712)
Q Consensus 480 ~-~g-~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (712)
+ +| .++|+=.|+..-. -|..+.++|.+.+..|++|++..+|.|+||++-|++ +..+|..
T Consensus 155 ~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 155 CDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred cCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 4 34 4555555544221 222235899999999999999999999999999988 3355543
No 60
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.20 E-value=0.0025 Score=78.57 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
++++|++++..|+..+..+|....||...+.+.|...++++++.|++||||-|+|.||...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5678899999999999999999999999999999999999999999999999999997655
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.10 E-value=0.034 Score=58.30 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=86.9
Q ss_pred eccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccc-ccccCceeEEEeeec
Q 005143 399 SRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFCK 477 (712)
Q Consensus 399 SR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~S-PLvp~Re~~fLRyck 477 (712)
-|.-..|...+..|++.|.|.+...+=.+- +...+||..-.... . +|...-.|- | +..|||-++|--.
T Consensus 80 fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~~-----~-vY~~~~pPw~P-vk~RD~V~~~s~~ 148 (236)
T cd08914 80 VWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSEDD-----Q-IYHITCPIVNN-DKPKDLVVLVSRR 148 (236)
T ss_pred EEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCCc-----C-EEEEecCCCCC-CCCceEEEEEEEE
Confidence 344447788999999999998755444333 34444444322211 1 354433332 3 4899999987766
Q ss_pred eec-CCe-EEEEEEecCC-CcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005143 478 QHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (712)
Q Consensus 478 q~~-~g~-waVvDvSld~-~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (712)
+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 149 ~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 149 KPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred ecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 655 885 8888888765 222 1224899999899999999999999999999995 4556544
No 62
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.73 E-value=0.024 Score=61.94 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=51.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
++|++..+.......|+.+..+ .+||+..++..||+++||+..||..||-|.|-+..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 4555667999999999987533 5799999999999999999999999999999887654443
No 63
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.67 E-value=0.019 Score=47.38 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccch
Q 005143 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (712)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 186 (712)
.++.|+++|...+++.......|..+.+|+..||+.||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999996543
No 64
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=89.98 E-value=0.55 Score=46.65 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
|++.+|... . ..++|+|.+++..+ . + +..-.++..++.+|+.||+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~---~--~-~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG---S--P-LKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC---C--C-eEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 455569977 3 35799999998632 1 2 345567777999999999999999999999964
No 65
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=89.60 E-value=0.61 Score=47.80 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=43.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhc
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILS 678 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils 678 (712)
..++|... . ..++|+|.+|+..+ +.+...++..-++ +||+.+|++|.|...|.+||..+
T Consensus 21 ~~~~W~~~-~--~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~ 80 (222)
T cd08871 21 STDGWKLK-Y--NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNM 80 (222)
T ss_pred CCCCcEEE-E--cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhh
Confidence 34589976 3 35679999998632 2233445555565 99999999999999999999744
No 66
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.57 E-value=1.2 Score=41.81 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCCCHHHHH-HHHHHHhhCCCCCHHHHHHHHHhhccccceeeeec
Q 005143 139 HRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (712)
Q Consensus 139 tr~T~~Ql~-~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 182 (712)
.+||.++.. .+...+.. . ....++|+++|+++.++..|.
T Consensus 11 r~ys~EfK~~aV~~~~~~-g----~sv~evA~e~gIs~~tl~~W~ 50 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEP-G----MTVSLVARQHGVAASQLFLWR 50 (121)
T ss_pred CCCCHHHHHHHHHHHHcC-C----CCHHHHHHHHCcCHHHHHHHH
Confidence 457776644 44444432 2 246778999999999999994
No 67
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=89.44 E-value=0.6 Score=49.09 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=47.4
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCchhhhhhh
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdilsnG~~vqE~a~i 689 (712)
..++|..- ...++|+|.++.+ . .+++-..=.-+++|++.|||+|.|...|.+||. +...++.+.+|
T Consensus 53 ~~~~W~l~---~~k~gIkVytr~~---s-----~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA---SSTTSVTLYTLEQ---D-----GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE---EcCCCEEEEEecC---C-----CceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789865 3468999999973 1 234444444489999999999999999999997 33444444444
No 68
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=89.39 E-value=0.68 Score=47.63 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=43.8
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcC
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSN 679 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdilsn 679 (712)
-...+|..- ...++|+|.++.. +|...|.. + .+. +++||+.|+++|.|...|.+||....
T Consensus 19 ~~~~gW~l~---~~~~gI~Vy~k~~---~~~~~~~~-g-e~~--v~as~~~v~~ll~D~~~r~~Wd~~~~ 78 (205)
T cd08874 19 QATAGWSYQ---CLEKDVVIYYKVF---NGTYHGFL-G-AGV--IKAPLATVWKAVKDPRTRFLYDTMIK 78 (205)
T ss_pred hccCCcEEE---ecCCCEEEEEecC---CCCcceEE-E-EEE--EcCCHHHHHHHHhCcchhhhhHHhhh
Confidence 456789533 2468999999874 33444444 3 343 49999999999999999999997543
No 69
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=88.92 E-value=4.6 Score=39.01 Aligned_cols=140 Identities=11% Similarity=0.144 Sum_probs=74.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 480 (712)
.+-+|.-.+..+-+++-|..+|-+.||. +.-++|++.|..+- | .+ ..++...+ ..+.-|.=|.+. .
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~~--~-~r---~~i~~~~~--g~~~~w~s~~~~--~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDTV--R-FR---LTMHPDAN--GTVWSWVSERTL--D 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCeE--E-EE---EEEEeccC--CEEEEEEEEEEe--c
Confidence 3456666888999999999999999999 56778888544221 1 11 11122222 122222224332 3
Q ss_pred CCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005143 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (712)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (712)
...|-|.=..+.. .+ + ..+=--..+++.++| |+|++..+.+...-. .+.-+++..-.--.-..=+++
T Consensus 71 ~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 137 (146)
T cd08860 71 PVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMAR 137 (146)
T ss_pred CCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHH
Confidence 3334332112111 11 1 122223446888887 999999998865311 222223322222233445677
Q ss_pred HHHHHHH
Q 005143 561 LQRQCEC 567 (712)
Q Consensus 561 LqR~cer 567 (712)
|.+.+|+
T Consensus 138 Lk~~aE~ 144 (146)
T cd08860 138 IKKKIEA 144 (146)
T ss_pred HHHHhhh
Confidence 7777765
No 70
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=88.71 E-value=0.67 Score=47.67 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=46.2
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 005143 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (712)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils 678 (712)
.++|... . .++++.|.++++.+..|. -..+.--+|.+|+.||+||.|...|.+||-.+
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 4899977 3 458999999998665552 24566678999999999999999999999643
No 71
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=87.86 E-value=0.96 Score=46.13 Aligned_cols=56 Identities=21% Similarity=0.464 Sum_probs=40.9
Q ss_pred CCceeccCCCCCCc----eEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005143 613 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 613 ~~W~~l~~~~~~~d----Vrv~~r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 677 (712)
.+|... .. .++ |+|-.|+.. |. | +.--.+...++ +||+.|+++|.|...|.+||..
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 689987 33 344 888777752 22 2 22345566776 8999999999999999999964
No 72
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=87.70 E-value=1.7 Score=41.76 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhh-ccccceeeeecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHh
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L-gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (712)
.+|+.+++..+- -.+|=++| |++...|--|=|.||+-.-+-.........-++.+.|..++..|..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888776651 22333344 7888888888888887544433333333333333445555554544
Q ss_pred hhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhH
Q 005143 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (712)
Q Consensus 218 a~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (712)
|.++|+.||++++.|++-...
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888765443
No 73
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.63 E-value=4.6 Score=37.08 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=63.3
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 481 (712)
+-.+...+.++.++|.|.+.|.+-+|.+. .+++++.+ ...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~~-------~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGPN-------EYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCCC-------eEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 33466678899999999999999999864 45666521 1111 111112 232 2232223455543344
Q ss_pred CeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 005143 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (712)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 546 (712)
..+++....... .. + ...=--+-|.+. +|.++|||.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 554444221110 00 1 111122346777 5679999999999653 3444444444
No 74
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.48 E-value=2 Score=45.11 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=26.9
Q ss_pred ccchhHHHHHHHHhh--hhHHHHhhHHHHHhhHhHHhhhcC
Q 005143 183 QNRRTQMKTQLERHE--NSLLRQENDKLRAENMSIRDAMRN 221 (712)
Q Consensus 183 QNRRaK~Kk~~~r~e--~~~l~~en~~L~~en~~l~ea~~~ 221 (712)
||-|-|.|.+..+.| -..|..+|++|+.||++|++..++
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665554443 455788888999999988886653
No 75
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.92 E-value=6.9 Score=36.34 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=73.6
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCce-eEEEeeecee
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQH 479 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re-~~fLRyckq~ 479 (712)
.+-.|...+..+-++|.|.+.|.+-+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~- 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR- 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE-
Confidence 35566678889999999999999999994 5666675422 121 1 1110 111 223333322
Q ss_pred cCCeEEEEEEecCCCcCCCCCCCccceeec----C--Ccc-eEeecCC-CccEEEEEEeeeeccccccccchhhhccchh
Q 005143 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SGC-VVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGMG 551 (712)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~a 551 (712)
++.++.... +.. ..++++.. + .|+ -+++.++ |.++|+|--|++... . ++-++++.-+-
T Consensus 63 -----v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~~ 128 (144)
T cd08866 63 -----VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVLR 128 (144)
T ss_pred -----EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHHH
Confidence 222221100 000 01112111 0 122 3577887 789999987777653 2 33367766666
Q ss_pred HHHHHHHHHHHHHHH
Q 005143 552 FGAQRWVATLQRQCE 566 (712)
Q Consensus 552 fGA~rWlatLqR~ce 566 (712)
=+..+-++.|+++||
T Consensus 129 ~~~~~~l~~lr~~ae 143 (144)
T cd08866 129 QDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667788888888876
No 76
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=86.88 E-value=1.1 Score=47.34 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=46.1
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
...++|..- ...++|+|.++. |.. +++-..-+-+++|++.||++|.|...|.+||..
T Consensus 53 a~~~~W~l~---~dkdgIkVytr~-----~s~---~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT---STVEKIKIYTLE-----EHD---VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE---EccCCEEEEEec-----CCC---cEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 346899865 346899999984 221 567788888899999999999999999999964
No 77
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=86.68 E-value=3.1 Score=42.96 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=70.3
Q ss_pred cceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEee-eceecC-CeEEEEEEecCCCcCCCCCCCccceeec
Q 005143 432 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 509 (712)
Q Consensus 432 ~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRy-ckq~~~-g~waVvDvSld~~~~~~~~~~~~~~rr~ 509 (712)
.++.++++..+. +....+.|.+..+|-| +..|+|..|.. +...+. ..++|+.++++.-.-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555554332 2356788888888888 89999999999 666652 67899999987432110112478887 6
Q ss_pred CCcceEeecCC---CccEEEEEEeeeecccc-ccc
Q 005143 510 PSGCVVQDMPN---GYSKVTWVEHAEYDESQ-VHQ 540 (712)
Q Consensus 510 PSGclIq~~~n---G~skVtwVeH~e~d~~~-vh~ 540 (712)
=||-.|+..|. +-.+|+|+==...|... ||.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 79999998885 47899999944445552 543
No 78
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.21 E-value=1.4 Score=45.51 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCchhhhhh
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 688 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdilsnG~~vqE~a~ 688 (712)
....+|... ...++|.|.++|..| |.|.-++.| |+=+| +|.+.|+|.|+| |..||. .|.|-..
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~-----~m~e~~~ 87 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDE-----DLLHSQV 87 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhH-----HHHhhhh
Confidence 455689866 236789999999754 667556654 44458 999999999999 999994 4455444
Q ss_pred hc
Q 005143 689 IA 690 (712)
Q Consensus 689 ia 690 (712)
|.
T Consensus 88 Ie 89 (205)
T cd08907 88 IE 89 (205)
T ss_pred he
Confidence 43
No 79
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=85.99 E-value=1.3 Score=45.45 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 677 (712)
-.+.+|... . ..++|+|-+|.. +|. | +.--++...++ ++|+.|+++|.|...|.+||..
T Consensus 22 ~~~~~W~l~-~--~~~~i~Vy~r~~---~~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELL-V--ESSGISIYRLLD---EQS--G-LYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEE-E--ecCCeEEEEecc---CCC--C-cEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 344579977 3 357899998875 222 2 33566677788 8999999999999999999974
No 80
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=85.03 E-value=1.3 Score=45.42 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhcc--ccchhhhhhcCC
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNG 680 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~--~~R~eWdilsnG 680 (712)
..++|... . ..++|+|.+|++...+|.. -++-.-+|++++.||++|.|. ..|.+||..+..
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~~------~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~ 82 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGNL------YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD 82 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCcE------EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc
Confidence 56789977 4 3479999999986555532 344555699999999999864 478999975433
No 81
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=84.92 E-value=0.5 Score=55.96 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
...|...|..|..|+..+...+|.+.||+.+.||.||++++++...
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~s 613 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMS 613 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhh
Confidence 7888999999999999999999999999999999999999888664
No 82
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.88 E-value=1.9 Score=34.19 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=30.0
Q ss_pred HHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHh
Q 005143 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (712)
|.+.++..|++.++.|++++.+|. .||..|+.|+..+...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~----------------------------~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK----------------------------KENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence 456778888999999988877655 4777788887776643
No 83
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=83.85 E-value=1.5 Score=44.76 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=42.1
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeecc-ccChhHHHHhhhccccchhhhhhc
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILS 678 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wL-pv~p~~vf~FLrd~~~R~eWdils 678 (712)
-..+|... . ..++|+|-+|...+ . |+. --.+...+ .+|++.+|++|.|...|.+||..+
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~~---s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~ 78 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHPG---T--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA 78 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccCC---C--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh
Confidence 34569877 3 35689999888632 2 222 34443445 699999999999999999999643
No 84
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=83.70 E-value=1.9 Score=44.52 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=42.9
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcC
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSN 679 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdilsn 679 (712)
...+|..- .. .+||.|..+++...+|.- -= +---++.-|+.|+||+.+..+|.+||-..-
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~R--~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----YK--AQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----EE--EEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 56789866 43 489999999886555532 11 111127888999999999999999996543
No 85
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=83.60 E-value=1.7 Score=45.81 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=42.4
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
...++|..- . ..++|+|.++.. +. +++-..=+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~-~--~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLS-S--EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEE-E--ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 456689865 3 358999999653 11 123345567799999999999999999999964
No 86
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.54 E-value=11 Score=34.28 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=71.4
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 480 (712)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+.. |.-...+ +.+ ...+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 34567778899999999999999999994 55666655432 2211111 112 12244555556665432
Q ss_pred CCe--EEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 005143 481 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 558 (712)
Q Consensus 481 ~g~--waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 558 (712)
... |-+.+. . . +.... .-.-+++.++ .|+|||.-+++..- . +...++....--+.+.-+
T Consensus 73 ~~~i~~~~~~~----~---~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 73 AGSVSWTLVEG----E---G----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-P---LPGFLKRKAEPLVLDEAL 133 (140)
T ss_pred CCcEEEEEecc----c---c----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC-C---CCHHHHHHhhhHHHHHHH
Confidence 222 222211 0 1 11111 1256778877 49999999998753 2 333333333333344444
Q ss_pred HHHHHH
Q 005143 559 ATLQRQ 564 (712)
Q Consensus 559 atLqR~ 564 (712)
..|.++
T Consensus 134 ~~l~~~ 139 (140)
T cd07819 134 KGLKKR 139 (140)
T ss_pred HhHhhh
Confidence 444433
No 87
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=83.49 E-value=6.1 Score=41.23 Aligned_cols=138 Identities=13% Similarity=0.176 Sum_probs=89.1
Q ss_pred echhhHHHHhcCh---hhhhhhcccccccceEEEEee-CCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCC
Q 005143 407 INSLALVETLMDP---NRWAEMFPCMIARTATTDVIS-SGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (712)
Q Consensus 407 m~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis-~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g 482 (712)
+.|..+-++|+|. .+|=.+ |.+-.||+..+ +|. .++|-+.+.|.|+- .||+-++|---+.++-
T Consensus 64 vtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~tg~--------~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 64 VTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPVTGT--------EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCCCCc--------eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 4688899999996 589888 45556666655 332 68999999998876 5999999877777766
Q ss_pred eEEEEEEecCCCcCCCCCCCccceeecCCcceEe-----ecCCC-ccEEEEEEeeeeccccccccchhhhccchhHHHHH
Q 005143 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 556 (712)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq-----~~~nG-~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~r 556 (712)
.-+||-.|+..-.- +.....+|..-.=||.+|+ +-++| .|-++|++|=. . .|.+-++.=+.-.|+--
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~----~--~iP~~~v~~~~~~gmp~ 203 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPG----G--GIPKWVVKLAVRKGMPG 203 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCC----C--CCcHHHHHHHHHhcChH
Confidence 77777777663211 1111257888889999999 55555 35556655421 1 24444454444444444
Q ss_pred HHHHHHHH
Q 005143 557 WVATLQRQ 564 (712)
Q Consensus 557 WlatLqR~ 564 (712)
-|.-|..-
T Consensus 204 ~vkKm~~a 211 (219)
T KOG2761|consen 204 AVKKMEKA 211 (219)
T ss_pred HHHHHHHH
Confidence 44444333
No 88
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=82.73 E-value=2.1 Score=43.68 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 599 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 599 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++-+.-..++.|+..++++|+|-..+.+|+-.
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~ 77 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPF 77 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhccc
Confidence 44556666655 6789977 3 35799999999732 33889999999999999999999999999999975
No 89
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=82.36 E-value=9.5 Score=35.42 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=75.9
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 481 (712)
+..|...+..+.+++-|.+.|.+.+|.+ ..++|+..+. ++ +.+++.+..|. -.|++. .|++-. .+
T Consensus 4 s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~~ 68 (138)
T cd07813 4 SRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-PP 68 (138)
T ss_pred EEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-CC
Confidence 4456667788889999999999999995 5566666433 22 22223333332 234443 333321 13
Q ss_pred CeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 005143 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (712)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatL 561 (712)
. .+ -=.++++ . + ..+=--..+++.++|.|+|||.-|++..-. |+.+|++.-+.=-+++-|.++
T Consensus 69 ~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f 131 (138)
T cd07813 69 E-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAF 131 (138)
T ss_pred C-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3 22 1122222 1 1 112223457889989999999999998733 333333333333366777777
Q ss_pred HHHHHH
Q 005143 562 QRQCEC 567 (712)
Q Consensus 562 qR~cer 567 (712)
.+.|++
T Consensus 132 ~~~~~~ 137 (138)
T cd07813 132 EKRAKQ 137 (138)
T ss_pred HHHHhh
Confidence 777764
No 90
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.36 E-value=4.7 Score=35.65 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=44.0
Q ss_pred HHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhHhhhh
Q 005143 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (712)
Q Consensus 190 Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (712)
|-++.-..-..|+-+.+.|+.+|..+.+..... ......|..||.+||+|.. |++++++|
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~--------------~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------QHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555567788889999999999888876522 2234569999999999974 67776655
No 91
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=81.28 E-value=5.1 Score=40.62 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhc--cc
Q 005143 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ER 669 (712)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd--~~ 669 (712)
+=++.|.|..-|.. ..+|... . ..++|+|.+++..+.. +-+ ..+..-+|.+|+.||++|.| +.
T Consensus 7 ~~~~~~~~~~~~~~------~~~W~~~-~--~~~~i~v~~~~~~~~~----~~~--~k~~~~i~~~~~~v~~~l~d~~~~ 71 (206)
T cd08867 7 AEKLANEALQYIND------TDGWKVL-K--TVKNITVSWKPSTEFT----GHL--YRAEGIVDALPEKVIDVIIPPCGG 71 (206)
T ss_pred HHHHHHHHHHHhcC------cCCcEEE-E--cCCCcEEEEecCCCCC----CEE--EEEEEEEcCCHHHHHHHHHhcCcc
Confidence 33455566655542 2789977 3 3478999998643321 222 35666679999999999999 89
Q ss_pred cchhhhhhc
Q 005143 670 LRSEWDILS 678 (712)
Q Consensus 670 ~R~eWdils 678 (712)
.|.+||..+
T Consensus 72 ~r~~Wd~~~ 80 (206)
T cd08867 72 LRLKWDKSL 80 (206)
T ss_pred ccccccccc
Confidence 999999543
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.22 E-value=4.7 Score=35.05 Aligned_cols=51 Identities=35% Similarity=0.554 Sum_probs=37.5
Q ss_pred HHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhHhhhh
Q 005143 192 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (712)
Q Consensus 192 ~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (712)
++.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++.+|
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444567788888888888888875 55678999999999875 55565554
No 93
>PRK10724 hypothetical protein; Provisional
Probab=80.92 E-value=20 Score=35.34 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=82.5
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeecee
Q 005143 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (712)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~ 479 (712)
+.+.+|.-.+..+.+.+.|.++|-+.+|- |...+|+.-.. ++ +.+++.+--.-+ .+-+.-|+...
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 44577888999999999999999999888 56666776433 12 456665543332 33333333332
Q ss_pred cCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 005143 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (712)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWla 559 (712)
.++ .+.+ ..+++ + .+.+=.-.-++++++|.|+|+.--+.|+... ||.+++...+-=.|++-+.
T Consensus 83 ~~~-~I~~-~~~~G----p-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~----l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK----LIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecCC----C-------hhhccceEEEEECCCCCEEEEEEEEEEEchH----HHHHHHHHHHHHHHHHHHH
Confidence 333 3333 12222 2 1334444456788877899999988886543 4444454444444667777
Q ss_pred HHHHHHHHH
Q 005143 560 TLQRQCECL 568 (712)
Q Consensus 560 tLqR~cerl 568 (712)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 776656654
No 94
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=80.71 E-value=1.3 Score=35.98 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccc
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 185 (712)
||+|..+|-+|...+-..++... ...+||+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46778899888888878887765 57889999999999999998874
No 95
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=80.57 E-value=3.8 Score=39.61 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=42.4
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
.+|..+ .. .++|+|..++..+. .+...++..-++.++..|+++|.|...|.+||-.
T Consensus 15 ~~W~~~-~~--~~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~ 70 (193)
T cd00177 15 EGWKLV-KE--KDGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKN 70 (193)
T ss_pred CCeEEE-EE--CCcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhc
Confidence 589988 32 45899988876331 1235556667789999999999999999999953
No 96
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=79.46 E-value=48 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (712)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 3467778999999999999999988875 5666666
No 97
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=78.94 E-value=35 Score=31.02 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=70.1
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCC
Q 005143 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (712)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g 482 (712)
..|...+..+-++|.|.+.|.+-+|.+ ..+++++. . +. ++.+-.|....+++ ..+++. .+.+
T Consensus 6 i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~--~----~~------~~~~~~~~g~~~~~-~~~v~~-~~~~ 67 (139)
T cd07817 6 ITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD--T----RS------HWKAKGPAGLSVEW-DAEITE-QVPN 67 (139)
T ss_pred EEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC--C----ce------EEEEecCCCCcEEE-EEEEec-cCCC
Confidence 344556788999999999999999974 44555532 1 11 11112232333433 345544 3344
Q ss_pred eEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005143 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (712)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (712)
..++.. ..++.. . .....+ +++.++|.|+||+.-|.+......-.++-+++..-+-=..+.+|..|.
T Consensus 68 ~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 68 ERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred CEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 433222 222211 1 111222 466777789999999988775333333344443333334455555555
Q ss_pred HHHH
Q 005143 563 RQCE 566 (712)
Q Consensus 563 R~ce 566 (712)
+++|
T Consensus 135 ~~aE 138 (139)
T cd07817 135 QLVE 138 (139)
T ss_pred HHhh
Confidence 5544
No 98
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=77.53 E-value=18 Score=33.47 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccc
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~ 428 (712)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 445666788999999999999998887
No 99
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.40 E-value=8.9 Score=33.23 Aligned_cols=60 Identities=32% Similarity=0.451 Sum_probs=39.8
Q ss_pred HHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH----HHHhHhhhhc
Q 005143 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (712)
Q Consensus 191 k~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el----~r~~~~~~~~ 264 (712)
-++.-..-.+|+-+.+.|+++|..+.....++ ......|..||..||+|- +|++++++|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~--------------q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------QHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445667778888888887776654311 223456889999999996 4777776653
No 100
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=75.96 E-value=6.7 Score=39.82 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=41.2
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hccccchhhhhhcC
Q 005143 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSN 679 (712)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL-rd~~~R~eWdilsn 679 (712)
..+|... .. ..++|.|.+|.. +| .|-+ ..+...+++||..||++| .|...|.+||..+.
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~ 82 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVL 82 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCccc
Confidence 3489976 32 223899999986 33 2334 444456799999999865 58899999997543
No 101
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.81 E-value=3.8 Score=44.18 Aligned_cols=41 Identities=34% Similarity=0.439 Sum_probs=26.9
Q ss_pred hhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 198 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 34567777777777777755443 123348888888888654
No 102
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=74.86 E-value=8.8 Score=40.27 Aligned_cols=61 Identities=18% Similarity=0.441 Sum_probs=45.8
Q ss_pred cCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005143 609 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl-~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 677 (712)
+-..++|... . ..++|+|-+|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 22 ~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 22 DVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred cCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 4455589977 3 35789999987632 2 3332 356666778 9999999999999999999974
No 103
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=74.23 E-value=10 Score=38.42 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=42.9
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
..++|... . ..++|+|.+|+..+ +.| +..-++..-++.+|+.||+.|.| .|.+||..
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDD 73 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchh
Confidence 46799865 3 35799999999733 222 33457778889999999999988 68999953
No 104
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=74.17 E-value=52 Score=29.65 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=68.4
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCC
Q 005143 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (712)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g 482 (712)
..|...+..+-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++.-. . +.+. -+|.. .++.
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCcc
Confidence 346667889999999999999888864 4556655432 134432222110 0 1111 01111 1111
Q ss_pred eEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005143 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (712)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (712)
.-.|. ..+... +.+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..|+.|.
T Consensus 70 ~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 70 ERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred CCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHH
Confidence 00111 111100 000 1111123557788887899999999887755 3344554444444555666666
Q ss_pred HHHH
Q 005143 563 RQCE 566 (712)
Q Consensus 563 R~ce 566 (712)
++||
T Consensus 137 ~~~~ 140 (140)
T cd07821 137 AALE 140 (140)
T ss_pred HhhC
Confidence 6553
No 105
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=69.56 E-value=6.7 Score=41.69 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=25.2
Q ss_pred hhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
....+++||++|++||..++..+. +.+.|+.||.+||+.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhc
Confidence 344566666666666666665443 34457778877777544
No 106
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=68.51 E-value=13 Score=33.58 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=35.1
Q ss_pred HHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHhh
Q 005143 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 201 l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (712)
+.++++.|..|.+-|++.+. ..++.-+..+||.+|++|+.|+..+.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777653 34577789999999999999988764
No 107
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=67.14 E-value=55 Score=29.51 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.7
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 513 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 513 clIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
+.+.+.+.|.|+|+|.+... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864222 1122345666777777788888999988886
No 108
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=65.62 E-value=85 Score=28.13 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=68.8
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCC
Q 005143 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (712)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g 482 (712)
..|-..+..+-++|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ - +.+--...|++.--.+.
T Consensus 5 ~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~---~---g~~~~~~~~v~~~~p~~ 72 (140)
T cd08865 5 IVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF---L---GRRIELTYEITEYEPGR 72 (140)
T ss_pred EEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe---c---CceEEEEEEEEEecCCc
Confidence 445567888999999999999999986 456666544322 34332221111 0 11111223444322222
Q ss_pred eEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005143 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (712)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (712)
.+. ... .. +.. . ... =.-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|.
T Consensus 73 ~~~-~~~-~~----~~~-~-~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 73 RVV-FRG-SS----GPF-P-YED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred EEE-EEe-cC----CCc-c-eEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 221 111 11 110 0 100 1335667665 99999998876 333345555554444444556666665
Q ss_pred HHHH
Q 005143 563 RQCE 566 (712)
Q Consensus 563 R~ce 566 (712)
+.+|
T Consensus 136 ~~~e 139 (140)
T cd08865 136 ALLE 139 (140)
T ss_pred HHhh
Confidence 5544
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.53 E-value=20 Score=44.14 Aligned_cols=58 Identities=28% Similarity=0.356 Sum_probs=41.5
Q ss_pred hHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHhhh
Q 005143 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (712)
Q Consensus 199 ~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~ 262 (712)
..++..++.|..+.+-|+++|.+- |..+...-+++-.||.++|+|||+-|-|++.+.+
T Consensus 335 e~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 335 EALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 334455566666666788888766 3333344578999999999999999998876643
No 110
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=63.91 E-value=19 Score=37.01 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=40.2
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHH-hhhccccchhhhh
Q 005143 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDI 676 (712)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~-FLrd~~~R~eWdi 676 (712)
..+|..- .. ..++|+|.+++. ++. | .+-+.-+-+++||+.||+ .|.|...|.+||.
T Consensus 24 ~~~W~l~-~~-~~~gi~V~s~~~---~~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~ 80 (209)
T cd08906 24 EENWKFE-KN-NDNGDTVYTLEV---PFH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNK 80 (209)
T ss_pred ccCCEEE-Ee-cCCCCEEEEecc---CCC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCc
Confidence 3589854 21 247899999765 222 2 233666677999999985 7899999999995
No 111
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.70 E-value=18 Score=42.22 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=16.8
Q ss_pred cCCCCCeeeccCCCcccccChhhhhhh
Q 005143 356 QTDEPLWIRSFEGSGRQVLNHEEYLRT 382 (712)
Q Consensus 356 ~~~eplWi~~~~~~p~e~Ln~~eY~~~ 382 (712)
+..++|.+.+.+ + +-..|.-||.+.
T Consensus 439 ne~p~L~~~s~d-c-r~~~n~te~~~l 463 (655)
T KOG4343|consen 439 NEEPLLYIPSPD-C-RPLINTTESLRL 463 (655)
T ss_pred cCCCceeccCcc-c-hhhhhhhhhhhh
Confidence 556778887653 3 447788888765
No 112
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=60.05 E-value=68 Score=29.90 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=31.2
Q ss_pred EeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 515 VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 515 Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
+++. +|.|+|+|..+.++.-.....++.+++...+.=...+.|..|++++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999887755444455555544433334555566655554
No 113
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=59.24 E-value=18 Score=37.36 Aligned_cols=53 Identities=23% Similarity=0.502 Sum_probs=39.9
Q ss_pred CceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 614 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 614 ~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
+|..+ ...+.+.+..+|. .+|.| +.--.+++=+|.+|..|...|-|+ |.+||.
T Consensus 28 ~w~~~---~~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~ 80 (204)
T cd08908 28 GWVSY---STSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDV 80 (204)
T ss_pred CCccc---CCCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHH
Confidence 77766 2357799999986 35655 556677788898888888777775 999995
No 114
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=56.34 E-value=1.4 Score=37.22 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeec
Q 005143 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (712)
Q Consensus 136 R~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 182 (712)
++|++||+++...+-..+.. ......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHH
Confidence 35567998887777666521 23568889999999999999883
No 115
>smart00340 HALZ homeobox associated leucin zipper.
Probab=54.25 E-value=13 Score=29.17 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHhHh
Q 005143 241 QHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 241 q~L~~ENa~Lk~el~r~~~~ 260 (712)
..|..||.||++|++.++++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35777899999999988865
No 116
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.37 E-value=34 Score=32.01 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhHHHHHHHhH
Q 005143 239 EEQHLRIENARLKDELDRVCA 259 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~ 259 (712)
+..+|++||+.|++.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 556777888888877776543
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=50.04 E-value=64 Score=26.87 Aligned_cols=39 Identities=36% Similarity=0.474 Sum_probs=26.7
Q ss_pred HhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH
Q 005143 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (712)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (712)
+..-..|..+.+.|..+|..|+. +..+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~---------------------~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK---------------------EIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Confidence 44455677777888888877776 3345777777777764
No 118
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.02 E-value=17 Score=40.33 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=26.5
Q ss_pred hhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
....+++||++|+.||..|++.+. +.+.+..||++|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 345566777777777777766553 34456678888776554
No 119
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.01 E-value=22 Score=39.18 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=13.3
Q ss_pred hhhHHHHhhHHHHHhhHhHHhh
Q 005143 197 ENSLLRQENDKLRAENMSIRDA 218 (712)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea 218 (712)
|+..|++||++|+.||..|+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~e 54 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIE 54 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHH
Confidence 4555666666666666666653
No 120
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.32 E-value=18 Score=36.36 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHhHHHHHHHh
Q 005143 239 EEQHLRIENARLKDELDRVC 258 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (712)
|++.|++|++|||||+..++
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888876554
No 121
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.09 E-value=1.4e+02 Score=26.84 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhH
Q 005143 187 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (712)
Q Consensus 187 aK~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (712)
.+.++..-+++...|+.+.++=..-+..|..++....++-+..| ..+....+.|..|-|.|..|+.++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667778888888877777777778887777655543333 34566788899999999988876654
No 122
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.09 E-value=44 Score=31.50 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhHHHHHHHh
Q 005143 239 EEQHLRIENARLKDELDRVC 258 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (712)
+..+|++||..||+.|+++.
T Consensus 37 EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 37 ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56678888888888887753
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.66 E-value=32 Score=39.83 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhHHHHHHHhHhh
Q 005143 240 EQHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (712)
.+++..|-..|++|++++....
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666555544443
No 124
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.38 E-value=11 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.6
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 125
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.37 E-value=30 Score=38.28 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=49.5
Q ss_pred ecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHh
Q 005143 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (712)
||=-=|.++| +.+....+.|+....|+.+.++-||..-. ...+...|.++|+..|.+|+.+|-++..+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6644444433 34456678888888888887776665221 11244567789999999999999888877
Q ss_pred hhhccC
Q 005143 261 AGKFLG 266 (712)
Q Consensus 261 ~~~~~~ 266 (712)
..|.-+
T Consensus 122 f~k~k~ 127 (401)
T PF06785_consen 122 FMKTKG 127 (401)
T ss_pred HHHhcc
Confidence 666443
No 126
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.36 E-value=2e+02 Score=26.94 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=63.2
Q ss_pred eEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCe
Q 005143 404 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 483 (712)
Q Consensus 404 vV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~ 483 (712)
.+...+.++-+++.|.++|.+-.|.+ ..+++++.|.....+..++ +.. ....|.+.-+-.++...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEE-----EecCCcEEEEEEEEEeecCCcE
Confidence 34457889999999999999999974 6677776322222122222 110 1112222223344444334445
Q ss_pred EEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc---cccccchhhhccc
Q 005143 484 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLIISG 549 (712)
Q Consensus 484 waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~---~vh~lyrpl~~Sg 549 (712)
+++. . ++. .. ...+ .-|++.++| |+||+-.+++..-- ..+.|+.+++...
T Consensus 78 ~~~~-~--~g~---~~--~~~~-------~~~~~~~~g-t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~ 130 (146)
T cd07824 78 LEVR-A--SGD---LE--GVGR-------WTLAPDGSG-TVVRYDWEVRTTKPWMNLLAPLARPVFRWN 130 (146)
T ss_pred EEEE-E--EEe---ee--EEEE-------EEEEEcCCC-EEEEEEEEEEcCHHHHHhhhHhhhhHHHHh
Confidence 5442 2 111 00 0111 236665554 99999888887542 3555666555433
No 127
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=44.23 E-value=47 Score=36.03 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=25.2
Q ss_pred HhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
-.+...+..+|+.|++++..+.+... +.+.|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhC
Confidence 33444555666666666655554332 45567777777777644
No 128
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.76 E-value=63 Score=34.12 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005143 189 MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (712)
Q Consensus 189 ~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (712)
.|-+...+++..|..+++.|.++...+++.+ .+|+.||++|.++++++-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhch
Confidence 3344445566667777777777777666644 468888888888776543
No 129
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.65 E-value=74 Score=34.72 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005143 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (712)
Q Consensus 191 k~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (712)
|+++|.+...+-.|.+.|..+|.+||+ +.++|..|-.+||+=+..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~---------------------qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKD---------------------QASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 445667777788888999999998887 445666777777775543
No 130
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.18 E-value=41 Score=31.20 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=21.4
Q ss_pred ceeeeecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHh
Q 005143 176 RQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 176 rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (712)
-+...||++.=- .+-.+.+++...+++++++++.+|..|++
T Consensus 15 l~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 15 LQYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678866411 11122344445566666666666665554
No 131
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=40.72 E-value=55 Score=32.54 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=40.9
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhH-HHHhhhccccchhhhhhc
Q 005143 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILS 678 (712)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~-vf~FLrd~~~R~eWdils 678 (712)
..+|... .+ +.+++.+..+...+ +. .+-...+...++.+++. +.++|.|...|.+||-.+
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~ 78 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNV 78 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhc
Confidence 4679977 43 23445455554321 11 25678888999988886 668999999999999654
No 132
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.67 E-value=77 Score=36.36 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeee
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIR 364 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~ 364 (712)
|++ |..||.|+..+.+..---|.+
T Consensus 399 Ile-ak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 399 ILE-AKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 444 678999988887766667876
No 133
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.45 E-value=22 Score=32.34 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.8
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
...|+.++.||+.||++|.|.....+|.-.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~ 33 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSPK 33 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCcc
Confidence 457889999999999999999999999854
No 134
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=39.29 E-value=17 Score=38.11 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=40.5
Q ss_pred cCCCCCceeccCCCCCCceEEEE-ecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005143 609 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~-r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 677 (712)
+-.+.+|..+ - ...+++|.. |.- +.| | =...|- .-+. ++|..|+||+-|..-|.+||.+
T Consensus 25 ~~~~~~We~~-~--~k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~ 85 (219)
T KOG2761|consen 25 CDAGQGWELV-M--DKSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDM 85 (219)
T ss_pred cCcccchhhh-c--ccCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHH
Confidence 5667899877 2 235677766 332 123 3 234443 3356 9999999999999999999964
No 135
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.16 E-value=88 Score=27.02 Aligned_cols=44 Identities=32% Similarity=0.430 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHH
Q 005143 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 257 (712)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~ 257 (712)
....++..|+.|+......+. +...+..+|+.||..|++||+..
T Consensus 23 ~~~~~~k~L~~ERd~~~~~l~--------------~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 23 VHEIENKRLRRERDSAERQLG--------------DAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555556665554443332 22345667888888888887654
No 136
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=39.07 E-value=7e+02 Score=29.23 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHH-Hhh-CCCCCHHHHHHHHHhhccccceeeeecccchhHH-HHHHHHhhhhHHHHhhHHHHHhhHh
Q 005143 138 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM-KTQLERHENSLLRQENDKLRAENMS 214 (712)
Q Consensus 138 Rtr~T~~Ql~~LE~~-F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~-Kk~~~r~e~~~l~~en~~L~~en~~ 214 (712)
--++|.+....|.+. |-. ..+|..+.-+++-++.. .=.+|+|.+. +|++++.--..|......-.+||.+
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvR-------RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVR-------RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHH-------HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 456888888888765 222 33566665566555552 1122333322 2222222223344444445556665
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHhhhh
Q 005143 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGK 263 (712)
Q Consensus 215 l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~~ 263 (712)
|+. +.++|..+|.-|-++|.++.++...
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHhh
Confidence 554 6678999999999999988776543
No 137
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.92 E-value=19 Score=32.44 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..++-++.||+.||++|.|-....+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 138
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.80 E-value=1.5e+02 Score=24.56 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.6
Q ss_pred HhhhhHHHHhhHHHHHhhHhHHh
Q 005143 195 RHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (712)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777666655
No 139
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=37.74 E-value=31 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..++-+++||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4567789999999999999999999964
No 140
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=37.25 E-value=35 Score=43.82 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+-.+++++.-|...|..+|+...+|.-.++..++.-|++..|.+-.|||++++++.+..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~ 503 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNH 503 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccc
Confidence 44567789999999999999999999999999999999999999999999888877543
No 141
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.78 E-value=24 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
.+++.++.||++||+.|.|-....+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3688999999999999999999999974
No 142
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=34.67 E-value=29 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..+.-+++||+.||++|.|.....+|.-
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~~ 31 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWHP 31 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhcc
Confidence 3567799999999999999999999973
No 143
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=34.35 E-value=1e+02 Score=31.56 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhh-ccc
Q 005143 591 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 669 (712)
Q Consensus 591 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLr-d~~ 669 (712)
+-.++++.....|-.-. ....+|... . .+.++++|.++.. |+.. .--+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~---~~~~----k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVV---PDIG----KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEc---CCCC----cEEEEEEEecCCHHHHHHHHHhchh
Confidence 33445555555554444 245689865 2 2356788988665 2221 223345567999999996666 569
Q ss_pred cchhhhhhc
Q 005143 670 LRSEWDILS 678 (712)
Q Consensus 670 ~R~eWdils 678 (712)
.+.+|+..+
T Consensus 74 ~~~~W~~~~ 82 (209)
T cd08905 74 QMGEWNPNV 82 (209)
T ss_pred hhceecccc
Confidence 999999644
No 144
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.06 E-value=3e+02 Score=23.55 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.2
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (712)
+..|...+..+-+.|.|...|..-+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 3455556889999999999999988884 4444554
No 145
>PF15058 Speriolin_N: Speriolin N terminus
Probab=33.95 E-value=62 Score=33.38 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=28.0
Q ss_pred hHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhH
Q 005143 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (712)
Q Consensus 199 ~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (712)
.-++.++++|-.||++||+.. +|..||.+||.-|.+.+.
T Consensus 8 eGlrhqierLv~ENeeLKKlV----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLV----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHH----------------------HHHHHHHHHHHHHHHhhc
Confidence 345677777778888888744 377799988887666554
No 146
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.83 E-value=21 Score=32.62 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.3
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
.++-++.||++||+||.|.....+|.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999983
No 147
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.82 E-value=30 Score=31.55 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.4
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4677889999999999999999999985
No 148
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.69 E-value=1.5e+02 Score=25.51 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhH
Q 005143 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (712)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (712)
.|-..++.|+.||..|++ +...+..|++.|++..+-++.
T Consensus 11 ~Li~~~~~L~~EN~~Lr~---------------------q~~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRA---------------------QEKTWREERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665 334566677777666554433
No 149
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=33.46 E-value=30 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
+...++-+++||+.||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999963
No 150
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.27 E-value=25 Score=32.90 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
|.+++.++.||++||+.|-|+.+..+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 151
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=33.25 E-value=48 Score=27.23 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhhCC--CCCHHHHHHHHHhhccccce
Q 005143 141 HTPQQIQELESLFKECP--HPDEKQRLELSKRLCLETRQ 177 (712)
Q Consensus 141 ~T~~Ql~~LE~~F~~~~--~Ps~~~R~~LA~~LgLs~rQ 177 (712)
+|+.|.+.|...|+..- +|-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 58899999999998754 36677789999999998754
No 152
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=33.24 E-value=86 Score=32.50 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=36.0
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
.+|..+ + ..+++.+..+|.. +|.|.-++ ++++=+|.+|..|+..+-+ .|.+||.
T Consensus 27 k~w~~~-~--~~~~~e~~ykK~~--d~~~lk~~---r~~~ei~~~p~~VL~~vl~--~R~~WD~ 80 (205)
T cd08909 27 KGWISC-S--SSDNTELAYKKVG--DGNPLRLW---KVSVEVEAPPSVVLNRVLR--ERHLWDE 80 (205)
T ss_pred cCCccc-C--CcCCeEEEEecCC--CCCceEEE---EEEEEeCCCHHHHHHHHHh--hHhhHHh
Confidence 478766 2 3578889999864 45553333 4577889666666554444 5999995
No 153
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.03 E-value=4.3e+02 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.7
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccc
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCM 429 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~i 429 (712)
.+-.|...+..+-+.|.|.+.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34557778999999999999999998874
No 154
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.37 E-value=1.2e+02 Score=32.60 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhHHHHHHHhHhhhh
Q 005143 240 EQHLRIENARLKDELDRVCALAGK 263 (712)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~~~ 263 (712)
.+.|+.++.+|++|+..++.+...
T Consensus 231 n~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 231 NEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666677777766665543
No 155
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.24 E-value=47 Score=33.60 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 221 NPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 221 ~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
+-.||.||++...-|-+-..+.|...-..|++++.
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 45799999998876655555555555555555443
No 156
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=30.94 E-value=28 Score=31.58 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..|+-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577789999999999999999999963
No 157
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.68 E-value=35 Score=31.58 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.3
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
.+.-+..||++||++|-|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999996
No 158
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=30.16 E-value=1.7e+02 Score=29.35 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccch
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 186 (712)
..+|+++++++.+.-.++ |....+..||+++|+++.-|.+=.+--.
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 579999999999988776 6778899999999999887766654444
No 159
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.58 E-value=1.4e+02 Score=34.90 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.5
Q ss_pred CCChhhHHHHHHHHHhHHHHHHHhHh
Q 005143 235 DISLEEQHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 235 ~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (712)
+...+.++|..|-++|+..|+.+...
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888878888777766543
No 160
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=29.50 E-value=47 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
..+|+.|.+.|+..++. ....++|..||++...|+.|-++.+.|.|
T Consensus 5 ~~Lt~rqreVL~lr~~G------lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRERG------LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46899999999884322 34678999999999999998775554444
No 161
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.30 E-value=37 Score=29.45 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.7
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 162
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.29 E-value=56 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=26.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhhc
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWdils 678 (712)
...|+-++.||++||+++.|.....+|.-.+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3467778999999999999999999997533
No 163
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.28 E-value=88 Score=33.85 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=31.9
Q ss_pred HHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhh-HHHHHHHHHhHHHHHHHhHhh
Q 005143 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~-q~L~~ENa~Lk~el~r~~~~~ 261 (712)
..-.....+.+||++|++++. +. +++......|++|.+|++.++
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566788999999998764 22 455556666999999988765
No 164
>smart00340 HALZ homeobox associated leucin zipper.
Probab=28.53 E-value=52 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHhhhhHHHHhhHHHHHhhHhHHhhh
Q 005143 193 LERHENSLLRQENDKLRAENMSIRDAM 219 (712)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~ 219 (712)
+.+.++..|+.-.+.|..||.+|+.++
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888887644
No 165
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=28.46 E-value=33 Score=26.78 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeec
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 182 (712)
.+++.|...|...|-. ...-.++|..+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHH
Confidence 4788999999999933 2347789999999998877553
No 166
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=28.36 E-value=19 Score=26.88 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccch
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 186 (712)
.+++.+...++..|... ..-.++|..+|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888877432 3467789999999999988865433
No 167
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.33 E-value=1.4e+02 Score=34.21 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=64.9
Q ss_pred CCCCCceeeeccce---eEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccccccc
Q 005143 390 KPNGFVTEASRETG---MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVP 466 (712)
Q Consensus 390 ~~~g~~~EASR~sg---vV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp 466 (712)
.+++....|+=-.. +=-+|...|-.+|.-.. +- |..|+-..--+--+.|+++-++.+=. | .--.-
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt---dk----Vt~ak~~~~~~~vVsgs~DRtiK~WD--l---~k~~C 295 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT---DK----VTAAKFKLSHSRVVSGSADRTIKLWD--L---QKAYC 295 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccc---cc----eeeehhhccccceeeccccchhhhhh--h---hhhhe
Confidence 45666666664444 66678888888886521 11 11111100000012355565554422 1 12455
Q ss_pred CceeEEEeeeceecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEE
Q 005143 467 VREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVE 529 (712)
Q Consensus 467 ~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVe 529 (712)
+|++.++=||--+.-+ ++.+-+.+.+. .+|++-.=|+=..+.+|-|+ +||=|+
T Consensus 296 ~kt~l~~S~cnDI~~~-----~~~~~SgH~Dk----kvRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 296 SKTVLPGSQCNDIVCS-----ISDVISGHFDK----KVRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred eccccccccccceEec-----ceeeeeccccc----ceEEEeccCCceeeEeecCc-ceeeEe
Confidence 6666677777655433 33333333333 48999888888889999887 988775
No 168
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.16 E-value=2e+02 Score=30.18 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHhh
Q 005143 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (712)
++.-..+++...++++.|..++.+ -+-..|+.||.+||.||++++.-.
T Consensus 92 q~~v~~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 92 QEKVSYQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777777555443 133458899999999999987654
No 169
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.32 E-value=46 Score=31.02 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.2
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.01 E-value=2.2e+02 Score=28.11 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=40.9
Q ss_pred eeeecccchhHH-----HHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHH
Q 005143 178 VKFWFQNRRTQM-----KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKD 252 (712)
Q Consensus 178 VkvWFQNRRaK~-----Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~ 252 (712)
.+|||.|...-. .-.....+...++.++..|..+...++..+....+. +...+|..+.+.|++
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~------------~t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE------------PTNEELREEIEELEE 123 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHH
Confidence 488888765422 233334456677777777777777777777654331 123345555555665
Q ss_pred HHHHHhHh
Q 005143 253 ELDRVCAL 260 (712)
Q Consensus 253 el~r~~~~ 260 (712)
|+..+..-
T Consensus 124 e~~~l~~k 131 (169)
T PF07106_consen 124 EIEELEEK 131 (169)
T ss_pred HHHHHHHH
Confidence 55554433
No 171
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.67 E-value=56 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=24.0
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
.++-++.||++||++|.|..+..+|.-
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccCh
Confidence 466688999999999999999999984
No 172
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.20 E-value=83 Score=27.89 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHhHh
Q 005143 242 HLRIENARLKDELDRVCAL 260 (712)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~ 260 (712)
.|..||++||.||+++.+-
T Consensus 4 ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAE 22 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667888888888855443
No 173
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.00 E-value=40 Score=36.27 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHhHhhhhc
Q 005143 238 LEEQHLRIENARLKDELDRVCALAGKF 264 (712)
Q Consensus 238 ~~~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (712)
.....|..||+.|+.+++.+.....++
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355578889999998888887776654
No 174
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.37 E-value=85 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=21.6
Q ss_pred ecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHh
Q 005143 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (712)
|+..+..+.+....++++..++++|+.|+.|-+.++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444555555566666666666666666665553
No 175
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.15 E-value=1.9e+02 Score=33.80 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 186 RaK~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
..+.+-.+.+.....+++++++|+.|...+..... +..-..+.|..||++|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556667777777766553332221 112233467789999998874
No 176
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=22.47 E-value=79 Score=20.86 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeee
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 181 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvW 181 (712)
.++.++...+...|... + ...++|+.++++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 35666666666666532 2 4667889999988777665
No 177
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=22.03 E-value=43 Score=26.60 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=6.2
Q ss_pred HHHHHHHH
Q 005143 552 FGAQRWVA 559 (712)
Q Consensus 552 fGA~rWla 559 (712)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 37899976
No 178
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=21.47 E-value=31 Score=36.17 Aligned_cols=32 Identities=44% Similarity=0.492 Sum_probs=0.0
Q ss_pred hhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHh
Q 005143 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARL 250 (712)
Q Consensus 198 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~L 250 (712)
...|+.-.+.|-+||++|++ +.++|..||+||
T Consensus 131 I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRR---------------------ENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 34456666666677776665 455677788888
No 179
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.41 E-value=61 Score=30.53 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.9
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
+++-++.||+.||+.+.|..+..+|.-
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~ 31 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP 31 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh
Confidence 677888999999999999999999985
No 180
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=21.34 E-value=19 Score=42.46 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhh-------ccccceeeeecccchhHHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL-------CLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L-------gLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.||+.-+.|-..-.++-+..|.++++++.....+--.++ ..+.+.|++||.|||.++|+.+
T Consensus 691 pk~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 691 PKKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred cHHHHHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
No 181
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=21.20 E-value=67 Score=29.56 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=25.4
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..++.++.||++||+.+.|..+..+|.-
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999964
No 182
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.71 E-value=2.3e+02 Score=25.61 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccch
Q 005143 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (712)
Q Consensus 138 Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 186 (712)
+..|+.+++..|+.... .+.+|++-.+++-+++...
T Consensus 36 ~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 36 YRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred ceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 44699999999876543 2345666666666665543
No 183
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.67 E-value=1.3e+02 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCccCCCChhhHHHHHHHHHhHHHHHHHhHh
Q 005143 230 PAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 230 p~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (712)
|.+...+.++.+||+.|+..|+..+-.+|..
T Consensus 3 ~~v~~~~dydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 3 PVVVAQHDYDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred ceeecccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556788999999999999999988864
No 184
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=20.25 E-value=1.4e+02 Score=29.36 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=27.5
Q ss_pred eEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecCCeEEEEEEecCCC
Q 005143 434 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (712)
Q Consensus 434 ~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld~~ 494 (712)
..++|++.-..+..+|.--.+.+++....- .| .-+-|--...+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~----i~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QP----IPVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EE----EEEEEEEEEETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-Cc----EEEEEEEEEcCCCeEEEEEEEcce
Confidence 345666544444323344455555554443 33 333343333889999999999976
No 185
>PRK00118 putative DNA-binding protein; Validated
Probab=20.18 E-value=1.8e+02 Score=27.14 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
.+++.|...+...|... ....++|+.+|+++..|+.|...-|.+.|+
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~ 63 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLED 63 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35677777776665543 346779999999999999998766655554
No 186
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.11 E-value=1.2e+02 Score=35.90 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhHHHHHHH
Q 005143 239 EEQHLRIENARLKDELDRV 257 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (712)
|.++|+.||+.||++|+.+
T Consensus 317 Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5566777777777777643
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.09 E-value=2.9e+02 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005143 188 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (712)
Q Consensus 188 K~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (712)
+.+-.........|+++|++|+.++..++. +.+.|..||..+++.+..
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~---------------------~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQK---------------------KVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
No 188
>PHA03162 hypothetical protein; Provisional
Probab=20.08 E-value=2.9e+02 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.3
Q ss_pred hhhhHHHHhhHHHHHhhHhHHhhhcCC
Q 005143 196 HENSLLRQENDKLRAENMSIRDAMRNP 222 (712)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~ea~~~~ 222 (712)
..-..|.+++.+|+-||+.|+..+...
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999998643
Done!