Query 005143
Match_columns 712
No_of_seqs 403 out of 1716
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.3E-19 4.5E-24 182.5 18.0 201 337-568 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 4.6E-18 1.6E-22 150.6 4.9 77 130-206 13-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 1E-17 3.4E-22 144.1 5.1 63 130-192 13-75 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 1.2E-17 4.1E-22 143.0 4.2 63 131-193 14-76 (80)
5 2kt0_A Nanog, homeobox protein 99.7 1.7E-17 6E-22 143.5 4.9 64 130-193 18-81 (84)
6 1nk2_P Homeobox protein VND; h 99.7 2.7E-17 9.1E-22 140.5 5.4 66 131-196 6-71 (77)
7 2dmq_A LIM/homeobox protein LH 99.7 2.4E-17 8.1E-22 141.5 4.7 66 132-197 5-70 (80)
8 2cue_A Paired box protein PAX6 99.7 3.7E-17 1.2E-21 140.6 5.6 65 132-196 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.7 1.9E-17 6.4E-22 142.9 3.3 61 131-191 14-78 (80)
10 2dms_A Homeobox protein OTX2; 99.7 2.3E-17 8E-22 141.7 2.7 63 132-194 5-67 (80)
11 2dmu_A Homeobox protein goosec 99.7 4.4E-17 1.5E-21 136.5 4.3 62 132-193 5-66 (70)
12 1puf_A HOX-1.7, homeobox prote 99.6 1E-16 3.5E-21 136.8 6.4 64 132-195 11-74 (77)
13 1fjl_A Paired protein; DNA-bin 99.6 5.4E-17 1.9E-21 139.8 4.6 64 131-194 15-78 (81)
14 2h1k_A IPF-1, pancreatic and d 99.6 4.6E-17 1.6E-21 133.8 3.9 60 133-192 2-61 (63)
15 2e1o_A Homeobox protein PRH; D 99.6 7.1E-17 2.4E-21 135.3 5.0 61 133-193 6-66 (70)
16 2cra_A Homeobox protein HOX-B1 99.6 3.2E-17 1.1E-21 137.4 2.9 62 132-193 5-66 (70)
17 2vi6_A Homeobox protein nanog; 99.6 1.5E-17 5.3E-22 136.1 0.9 60 133-192 2-61 (62)
18 1wh7_A ZF-HD homeobox family p 99.6 3.8E-17 1.3E-21 141.2 3.2 60 131-191 14-78 (80)
19 1zq3_P PRD-4, homeotic bicoid 99.6 6.4E-17 2.2E-21 134.9 4.0 63 134-196 2-64 (68)
20 2da2_A Alpha-fetoprotein enhan 99.6 5.5E-17 1.9E-21 135.8 3.4 63 131-193 4-66 (70)
21 2hdd_A Protein (engrailed home 99.6 5.2E-17 1.8E-21 132.5 2.9 58 134-191 3-60 (61)
22 1ig7_A Homeotic protein MSX-1; 99.6 8.8E-17 3E-21 129.7 3.9 57 135-191 1-57 (58)
23 2djn_A Homeobox protein DLX-5; 99.6 5.3E-17 1.8E-21 136.1 2.4 61 132-192 5-65 (70)
24 2da1_A Alpha-fetoprotein enhan 99.6 7.3E-17 2.5E-21 135.0 3.3 62 132-193 5-66 (70)
25 1ahd_P Antennapedia protein mu 99.6 1E-16 3.4E-21 133.9 3.5 61 134-194 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 4.4E-17 1.5E-21 135.9 1.2 62 133-194 2-63 (68)
27 1jgg_A Segmentation protein EV 99.6 1.2E-16 4E-21 130.0 3.1 58 135-192 2-59 (60)
28 1ftt_A TTF-1 HD, thyroid trans 99.6 7E-17 2.4E-21 134.7 1.7 61 134-194 2-62 (68)
29 2l7z_A Homeobox protein HOX-A1 99.6 1.7E-16 5.9E-21 134.2 4.0 62 132-193 5-66 (73)
30 1b8i_A Ultrabithorax, protein 99.6 8.3E-17 2.8E-21 138.9 2.0 62 132-193 18-79 (81)
31 2da4_A Hypothetical protein DK 99.6 1.2E-16 4.1E-21 137.3 2.9 61 132-192 6-70 (80)
32 1bw5_A ISL-1HD, insulin gene e 99.6 8E-17 2.7E-21 133.4 1.6 60 133-192 2-61 (66)
33 3rkq_A Homeobox protein NKX-2. 99.6 2E-16 7E-21 127.0 3.2 57 134-190 2-58 (58)
34 2r5y_A Homeotic protein sex co 99.6 1.2E-16 4.1E-21 139.7 1.4 61 132-192 26-86 (88)
35 3nar_A ZHX1, zinc fingers and 99.6 1.8E-16 6.2E-21 140.9 2.6 64 132-195 23-86 (96)
36 1akh_A Protein (mating-type pr 99.6 1.6E-16 5.5E-21 129.4 2.0 59 132-190 3-61 (61)
37 2m0c_A Homeobox protein arista 99.6 3.3E-16 1.1E-20 132.4 3.9 63 131-193 6-68 (75)
38 1uhs_A HOP, homeodomain only p 99.6 4.1E-16 1.4E-20 131.4 4.3 59 135-193 2-61 (72)
39 2hi3_A Homeodomain-only protei 99.6 4.4E-16 1.5E-20 131.6 4.4 59 135-193 3-62 (73)
40 3a02_A Homeobox protein arista 99.6 2.2E-16 7.6E-21 128.4 2.5 57 137-193 2-58 (60)
41 3a03_A T-cell leukemia homeobo 99.6 3.4E-16 1.2E-20 125.8 3.2 54 139-192 2-55 (56)
42 2da5_A Zinc fingers and homeob 99.6 4.8E-16 1.7E-20 132.2 4.2 59 136-194 9-67 (75)
43 2cuf_A FLJ21616 protein; homeo 99.6 6.8E-16 2.3E-20 136.9 4.9 65 131-195 4-83 (95)
44 1b72_A Protein (homeobox prote 99.6 3.6E-16 1.2E-20 139.2 3.1 63 132-194 32-94 (97)
45 2k40_A Homeobox expressed in E 99.6 4.6E-16 1.6E-20 129.2 3.1 59 135-193 2-60 (67)
46 1x2n_A Homeobox protein pknox1 99.6 1.2E-15 4.2E-20 128.7 4.8 62 132-193 5-69 (73)
47 2ecc_A Homeobox and leucine zi 99.6 1.3E-15 4.4E-20 130.3 4.3 58 137-194 6-63 (76)
48 2ly9_A Zinc fingers and homeob 99.6 8.1E-16 2.8E-20 130.0 2.7 60 134-193 6-65 (74)
49 2dn0_A Zinc fingers and homeob 99.5 9.4E-16 3.2E-20 130.6 2.5 59 135-193 9-67 (76)
50 2dmn_A Homeobox protein TGIF2L 99.5 1.5E-15 5.3E-20 131.6 3.6 64 132-195 5-71 (83)
51 1puf_B PRE-B-cell leukemia tra 99.5 1.2E-15 4.1E-20 128.8 2.8 61 135-195 2-65 (73)
52 2ecb_A Zinc fingers and homeob 99.5 6.1E-16 2.1E-20 136.2 0.6 55 139-193 16-70 (89)
53 1e3o_C Octamer-binding transcr 99.5 1E-15 3.5E-20 148.1 2.0 61 132-192 99-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.5 2E-15 6.7E-20 131.5 3.0 61 135-195 2-65 (87)
55 1k61_A Mating-type protein alp 99.5 2.4E-15 8.2E-20 122.1 2.8 55 137-191 1-58 (60)
56 2xsd_C POU domain, class 3, tr 99.5 9.5E-16 3.3E-20 149.0 0.5 64 131-194 96-159 (164)
57 1du6_A PBX1, homeobox protein 99.5 1.4E-15 4.6E-20 125.2 1.3 58 134-191 3-63 (64)
58 2da6_A Hepatocyte nuclear fact 99.5 5.8E-15 2E-19 132.8 5.3 65 131-195 3-88 (102)
59 1au7_A Protein PIT-1, GHF-1; c 99.5 1.3E-15 4.4E-20 145.4 0.8 62 131-192 84-145 (146)
60 2cqx_A LAG1 longevity assuranc 99.5 1.5E-15 5E-20 128.6 1.0 57 135-191 9-66 (72)
61 2dmp_A Zinc fingers and homeob 99.5 5E-15 1.7E-19 130.1 4.4 56 138-193 17-72 (89)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 4.9E-15 1.7E-19 129.2 3.6 58 133-190 26-86 (87)
63 1wi3_A DNA-binding protein SAT 99.5 7.3E-15 2.5E-19 122.4 3.7 60 131-190 4-64 (71)
64 1le8_B Mating-type protein alp 99.5 5.2E-15 1.8E-19 128.2 2.8 58 135-192 3-63 (83)
65 3d1n_I POU domain, class 6, tr 99.5 6.8E-15 2.3E-19 140.9 3.6 60 132-191 91-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.5 2E-15 7E-20 126.9 -1.1 56 139-194 9-64 (69)
67 3nau_A Zinc fingers and homeob 99.5 9E-15 3.1E-19 121.6 2.7 53 141-193 11-63 (66)
68 1lfb_A Liver transcription fac 99.5 3.5E-15 1.2E-19 133.8 0.1 64 131-194 6-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.5 7.1E-15 2.4E-19 121.8 0.3 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 1.9E-14 6.5E-19 138.5 2.7 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 1.5E-14 5.1E-19 119.8 1.3 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 2.7E-14 9.3E-19 138.2 1.3 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 8.4E-14 2.9E-18 116.1 1.1 58 140-197 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 3.6E-13 1.2E-17 134.2 0.0 62 130-191 111-193 (194)
75 1em2_A MLN64 protein; beta bar 99.2 2.4E-10 8.1E-15 114.9 16.4 200 337-568 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.2 1.5E-10 5.2E-15 115.9 14.8 193 340-566 12-213 (221)
77 2pso_A STAR-related lipid tran 99.2 8.4E-11 2.9E-15 119.9 11.3 174 343-544 33-208 (237)
78 2lk2_A Homeobox protein TGIF1; 99.2 1.1E-11 3.6E-16 109.1 3.4 59 139-197 10-71 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 1.4E-11 4.8E-16 124.4 2.7 60 130-189 138-218 (221)
80 2da7_A Zinc finger homeobox pr 99.1 2.8E-11 9.4E-16 101.5 2.0 46 143-188 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 3.8E-11 1.3E-15 128.9 -0.9 56 135-190 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 98.9 7.1E-09 2.4E-13 102.4 13.1 151 398-568 53-210 (214)
83 1jss_A Stard4, cholesterol-reg 98.8 2.5E-08 8.5E-13 100.2 14.0 149 398-566 68-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 5.6E-08 1.9E-12 100.7 10.6 128 400-541 91-222 (258)
85 3qsz_A STAR-related lipid tran 98.5 8.9E-07 3E-11 85.9 12.8 152 398-567 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.4 1.6E-08 5.5E-13 74.9 -1.5 22 176-197 1-22 (37)
87 2e3n_A Lipid-transfer protein 98.3 6.3E-06 2.1E-10 84.0 12.7 200 340-568 24-247 (255)
88 2d4r_A Hypothetical protein TT 95.1 0.13 4.4E-06 45.3 10.0 139 402-568 7-145 (147)
89 2r55_A STAR-related lipid tran 93.4 0.15 5.2E-06 50.6 7.5 81 586-677 18-100 (231)
90 3tl1_A WHIE ORF VI, polyketide 90.8 2.3 7.8E-05 40.2 11.9 142 400-570 6-149 (159)
91 3tvq_A Multifunctional cyclase 89.4 3.3 0.00011 39.6 11.8 144 401-571 7-150 (169)
92 3tfz_A Cyclase; helix-GRIP, BE 89.2 3.7 0.00013 38.6 12.0 145 400-570 8-162 (172)
93 1t17_A Conserved hypothetical 88.0 1 3.5E-05 41.0 7.0 140 401-568 6-145 (148)
94 1jss_A Stard4, cholesterol-reg 87.7 0.75 2.6E-05 45.5 6.3 73 592-677 26-98 (224)
95 3p0l_A Steroidogenic acute reg 87.5 1.2 4.2E-05 43.8 7.7 77 590-677 10-87 (221)
96 3qsz_A STAR-related lipid tran 87.4 0.42 1.4E-05 45.7 4.1 56 613-677 3-58 (189)
97 1ln1_A PC-TP, phosphatidylchol 86.9 0.32 1.1E-05 47.3 3.0 58 611-677 26-84 (214)
98 2ys9_A Homeobox and leucine zi 85.8 0.24 8.2E-06 41.5 1.2 38 146-183 18-55 (70)
99 3fo5_A Thioesterase, adipose a 84.2 4 0.00014 41.9 9.8 107 554-677 10-119 (258)
100 2jn6_A Protein CGL2762, transp 83.7 0.2 6.8E-06 43.1 -0.2 42 139-183 4-45 (97)
101 2jee_A YIIU; FTSZ, septum, coi 81.1 2.8 9.6E-05 36.1 5.9 54 196-263 20-77 (81)
102 3p9v_A Uncharacterized protein 80.3 12 0.00042 34.7 10.8 140 401-566 11-150 (161)
103 2e3n_A Lipid-transfer protein 78.7 2 6.7E-05 43.2 5.1 76 592-677 28-105 (255)
104 1em2_A MLN64 protein; beta bar 73.7 3.6 0.00012 40.5 5.3 77 590-677 21-98 (229)
105 2pcs_A Conserved protein; stru 72.5 55 0.0019 29.5 12.9 118 402-546 8-127 (162)
106 2j5u_A MREC protein; bacterial 71.5 1.5 5.3E-05 44.9 2.1 17 239-255 44-60 (255)
107 2wt7_B Transcription factor MA 68.3 9.2 0.00031 33.5 5.9 68 172-260 17-84 (90)
108 1ci6_A Transcription factor AT 67.3 14 0.00046 30.1 6.5 41 194-255 21-61 (63)
109 1t2k_D Cyclic-AMP-dependent tr 66.9 16 0.00054 29.3 6.7 40 194-254 20-59 (61)
110 1hjb_A Ccaat/enhancer binding 62.4 13 0.00044 32.3 5.7 19 199-217 39-57 (87)
111 1l8d_A DNA double-strand break 54.0 14 0.00047 32.6 4.6 12 221-232 47-58 (112)
112 3ra3_B P2F; coiled coil domain 52.0 9.7 0.00033 25.6 2.4 18 241-258 3-20 (28)
113 1jnm_A Proto-oncogene C-JUN; B 51.4 22 0.00076 28.5 5.1 23 195-217 21-43 (62)
114 2qpv_A Uncharacterized protein 49.2 11 0.00036 35.7 3.3 30 647-676 28-57 (156)
115 2pso_A STAR-related lipid tran 48.3 22 0.00077 35.4 5.7 57 611-678 48-105 (237)
116 1gu4_A CAAT/enhancer binding p 46.1 30 0.001 29.4 5.3 16 201-216 41-56 (78)
117 3he5_B Synzip2; heterodimeric 45.5 57 0.0019 24.8 6.0 43 198-261 5-47 (52)
118 2d4r_A Hypothetical protein TT 41.7 10 0.00036 32.7 1.8 28 649-676 5-32 (147)
119 1gd2_E Transcription factor PA 41.4 38 0.0013 28.2 5.0 13 245-257 50-62 (70)
120 2wt7_A Proto-oncogene protein 41.3 79 0.0027 25.4 6.9 25 194-218 21-45 (63)
121 1hlv_A CENP-B, major centromer 37.9 19 0.00064 31.9 2.9 48 137-187 4-51 (131)
122 2pcs_A Conserved protein; stru 36.8 12 0.00042 34.0 1.5 28 648-675 5-32 (162)
123 2glo_A Brinker CG9653-PA; prot 36.4 13 0.00046 28.8 1.5 44 139-183 4-47 (59)
124 3s9g_A Protein hexim1; cyclin 36.3 12 0.00042 33.1 1.4 55 194-255 35-89 (104)
125 3p51_A Uncharacterized protein 36.3 1.3E+02 0.0045 28.0 8.7 111 402-535 7-118 (160)
126 2ns9_A Hypothetical protein AP 36.0 14 0.00049 33.1 1.8 29 647-675 14-42 (157)
127 2elh_A CG11849-PA, LD40883P; s 35.3 17 0.0006 30.4 2.2 43 135-182 17-59 (87)
128 1uii_A Geminin; human, DNA rep 33.9 81 0.0028 27.2 6.0 21 242-262 57-77 (83)
129 1t17_A Conserved hypothetical 33.9 19 0.00064 32.4 2.3 29 649-677 5-33 (148)
130 3m91_A Proteasome-associated A 33.3 83 0.0028 24.7 5.5 38 200-258 13-50 (51)
131 3ggn_A Uncharacterized protein 33.1 22 0.00075 32.6 2.7 30 647-676 5-34 (155)
132 3m48_A General control protein 33.1 39 0.0013 24.3 3.2 22 240-261 9-30 (33)
133 3a5t_A Transcription factor MA 33.0 3.9 0.00013 36.9 -2.4 20 239-258 73-92 (107)
134 1gd2_E Transcription factor PA 32.1 75 0.0026 26.4 5.4 16 240-255 52-67 (70)
135 1jko_C HIN recombinase, DNA-in 31.9 14 0.00047 26.8 0.8 43 140-187 5-47 (52)
136 2leq_A Uncharacterized protein 31.3 28 0.00094 30.5 2.9 27 648-674 7-33 (146)
137 3q6a_A Uncharacterized protein 29.8 30 0.001 30.6 2.9 27 649-675 4-30 (135)
138 2ns9_A Hypothetical protein AP 28.9 2.9E+02 0.01 24.1 10.4 26 404-429 20-45 (157)
139 3m9b_A Proteasome-associated A 28.4 53 0.0018 33.7 4.7 19 240-258 77-95 (251)
140 1x53_A Activator of 90 kDa hea 28.2 29 0.001 31.1 2.6 28 648-675 13-40 (145)
141 3hug_A RNA polymerase sigma fa 28.2 24 0.00081 29.6 1.8 48 140-192 37-84 (92)
142 3tfz_A Cyclase; helix-GRIP, BE 28.2 32 0.0011 32.1 2.9 30 647-676 6-35 (172)
143 2yy0_A C-MYC-binding protein; 27.2 82 0.0028 24.7 4.6 18 239-256 20-37 (53)
144 1deb_A APC protein, adenomatou 27.2 54 0.0018 25.7 3.4 26 239-264 11-36 (54)
145 3oja_A Leucine-rich immune mol 25.2 1.4E+02 0.0046 32.5 7.7 23 238-260 442-464 (487)
146 2dgc_A Protein (GCN4); basic d 25.1 76 0.0026 25.7 4.2 41 185-256 22-62 (63)
147 1tc3_C Protein (TC3 transposas 24.8 32 0.0011 24.2 1.8 40 140-184 5-44 (51)
148 2rgt_A Fusion of LIM/homeobox 24.6 2.4 8.3E-05 40.2 -5.7 30 132-161 134-163 (169)
149 1xn6_A Hypothetical protein BC 23.3 30 0.001 30.8 1.6 27 649-675 11-37 (143)
150 2le1_A Uncharacterized protein 23.3 49 0.0017 29.7 3.1 28 648-675 4-31 (151)
151 1s7o_A Hypothetical UPF0122 pr 23.3 61 0.0021 28.7 3.6 49 140-193 22-70 (113)
152 1z94_A Conserved hypothetical 23.2 30 0.001 30.4 1.6 26 650-675 7-32 (147)
153 2kew_A Uncharacterized protein 23.0 32 0.0011 31.3 1.8 26 649-674 13-38 (152)
154 1hjb_A Ccaat/enhancer binding 22.3 2.8E+02 0.0095 23.9 7.4 16 242-257 47-62 (87)
155 2oa5_A Hypothetical protein BQ 22.3 1.5E+02 0.0052 26.7 5.9 25 197-221 9-33 (110)
156 3mzy_A RNA polymerase sigma-H 22.2 45 0.0015 29.6 2.6 47 140-192 109-155 (164)
157 2lcg_A Uncharacterized protein 21.8 33 0.0011 30.6 1.6 26 649-674 4-29 (142)
158 2j5u_A MREC protein; bacterial 21.6 52 0.0018 33.5 3.2 19 243-261 41-59 (255)
159 3ggn_A Uncharacterized protein 21.4 4.4E+02 0.015 23.5 12.1 115 402-545 9-124 (155)
160 3tvq_A Multifunctional cyclase 21.1 48 0.0017 31.3 2.7 30 648-677 5-34 (169)
161 1go4_E MAD1 (mitotic arrest de 21.0 2.7E+02 0.0092 24.7 7.2 67 197-263 20-93 (100)
162 3a2a_A Voltage-gated hydrogen 20.8 1.9E+02 0.0064 23.1 5.4 25 239-263 26-50 (58)
163 2l8o_A Uncharacterized protein 20.5 36 0.0012 30.7 1.6 25 650-674 6-30 (144)
164 1xsv_A Hypothetical UPF0122 pr 20.4 71 0.0024 28.2 3.5 50 140-194 25-74 (113)
165 2lgh_A Uncharacterized protein 20.2 36 0.0012 30.7 1.5 26 649-674 4-29 (144)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=182.53 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 005143 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (712)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (712)
++.++++|++||+||+++++.. ..|....+.. +.++|.+.. .+....+-|..++|.+.+.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 7889999999999999999754 6898643321 223443221 1233578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehh-hhhcccccccCceeEEEeeeceecCCeEEEEEEe
Q 005143 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (712)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~a-El~v~SPLvp~Re~~fLRyckq~~~g~waVvDvS 490 (712)
|+ +.+|-..|. .+++++.|+. + -.++|. ....++++|++|||.++||+++.++|.|+|+..|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~------~--~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD------T--LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS------S--EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC------C--EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 889987754 5788888762 1 223442 2234567999999999999999999999999999
Q ss_pred cCCCcCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005143 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (712)
Q Consensus 491 ld~~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (712)
++.-. .+..+.++|+..++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.+...|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223589999999999999998 78999999999998765 55 68899999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=4.6e-18 Score=150.57 Aligned_cols=77 Identities=32% Similarity=0.428 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhhhhHHHHhhH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~ 206 (712)
..+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999887776666665544
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=144.13 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
..++.+|.|+.||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999964
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=143.02 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
..++||.|++||.+|+..||..|..++||+..++++||.+|+|+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 346788899999999999999999999999999999999999999999999999999999753
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=143.54 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
...+++|.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.67 E-value=2.7e-17 Score=140.49 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
.++++|.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 346678899999999999999999999999999999999999999999999999999999877654
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=141.46 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
.++||.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|++..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998765543
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.7e-17 Score=140.61 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
.+++|.|+.||.+|+..||..|..++||+..++.+||.+|+|+++||++||||||+|+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35678889999999999999999999999999999999999999999999999999999876543
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=1.9e-17 Score=142.92 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
.+++||.|+.||.+|+..||..|+. ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467888999999999999999999 999999999999999999999999999999999874
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2.3e-17 Score=141.70 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.+.||.|++||.+|+..||..|+.++||+..+|++||.+|+|+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 466888999999999999999999999999999999999999999999999999999997654
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-17 Score=136.48 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.+.+|.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34678889999999999999999999999999999999999999999999999999999753
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.65 E-value=1e-16 Score=136.83 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
++.+|.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567888999999999999999999999999999999999999999999999999999987654
No 13
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.65 E-value=5.4e-17 Score=139.75 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.++++|.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998654
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.65 E-value=4.6e-17 Score=133.79 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788999999999999999999999999999999999999999999999999999975
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7.1e-17 Score=135.32 Aligned_cols=61 Identities=36% Similarity=0.425 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+.+++|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4577889999999999999999999999999999999999999999999999999999753
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3.2e-17 Score=137.42 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.+.||+|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45678899999999999999999999999999999999999999999999999999999743
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=1.5e-17 Score=136.09 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
+++|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999975
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=3.8e-17 Score=141.16 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
..++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.64 E-value=6.4e-17 Score=134.94 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHh
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (712)
+||.|+.||.+|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 477889999999999999999999999999999999999999999999999999999877654
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-17 Score=135.79 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.++++|.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345678899999999999999999999999999999999999999999999999999999743
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=5.2e-17 Score=132.51 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778899999999999999999999999999999999999999999999999999986
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=8.8e-17 Score=129.65 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
||+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-17 Score=136.12 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.+.+|.|++||.+|+..||..|+.++||+..++++||.++||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4568889999999999999999999999999999999999999999999999999999864
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-17 Score=135.03 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.+.+|.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999743
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.62 E-value=1e-16 Score=133.87 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
+||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4778899999999999999999999999999999999999999999999999999998653
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.62 E-value=4.4e-17 Score=135.85 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
+++|.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999997654
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=130.05 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
||.|+.||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999999999999999999999974
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=7e-17 Score=134.73 Aligned_cols=61 Identities=38% Similarity=0.510 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
++|.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999997654
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.61 E-value=1.7e-16 Score=134.22 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.+.+|+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.61 E-value=8.3e-17 Score=138.86 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=137.26 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.++||.|+.||.+|+..||..|+.+ +||+..+|++||.++||+++||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4668889999999999999999999 999999999999999999999999999999999974
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=8e-17 Score=133.43 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||++.||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467889999999999999999999999999999999999999999999999999999864
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.60 E-value=2e-16 Score=127.00 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
++|.|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999986
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.60 E-value=1.2e-16 Score=139.75 Aligned_cols=61 Identities=34% Similarity=0.494 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
++.||.|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3567888999999999999999999999999999999999999999999999999999974
No 35
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=140.94 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
...+|+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3456788999999999999999999999999999999999999999999999999999986543
No 36
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.60 E-value=1.6e-16 Score=129.40 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
.+++|.|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999975
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-16 Score=132.39 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.++++|.|++||.+|+..||..|..++||+..++.+||..+||++.||++||||||+|+|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 346678899999999999999999999999999999999999999999999999999999753
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=4.1e-16 Score=131.38 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999855
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=4.4e-16 Score=131.63 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999865
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.59 E-value=2.2e-16 Score=128.38 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 137 ~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 368899999999999999999999999999999999999999999999999999765
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.4e-16 Score=125.75 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-16 Score=132.19 Aligned_cols=59 Identities=25% Similarity=0.551 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 136 R~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999997654
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=6.8e-16 Score=136.90 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhc---------------cccceeeeecccchhHHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Kk~~~r 195 (712)
..++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346788899999999999999999999999999999999999 99999999999999999987654
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=3.6e-16 Score=139.17 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.+.++.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778899999999999999999999999999999999999999999999999999998653
No 45
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.58 E-value=4.6e-16 Score=129.18 Aligned_cols=59 Identities=31% Similarity=0.517 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67889999999999999999999999999999999999999999999999999999754
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.2e-15 Score=128.71 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
++.+++|++|+.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456778899999999999999987 99999999999999999999999999999999999754
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.3e-15 Score=130.33 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 137 ~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
+|.+||.+|+.+||+.|..++||+..+|++||..+||+++||++||||||+|+|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=8.1e-16 Score=130.01 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.++.|+.||.+|+..||..|+.++||+..++++||.++||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467789999999999999999999999999999999999999999999999999999754
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-16 Score=130.56 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
++.|++||.+|+..||..|..++||+..+|++||.++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44578899999999999999999999999999999999999999999999999999744
No 50
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-15 Score=131.64 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
.++||+|++|+.+|+..||..|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456788899999999999999988 5999999999999999999999999999999999976544
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.54 E-value=1.2e-15 Score=128.77 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
||+|++||.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778899999999999999 899999999999999999999999999999999999976544
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=6.1e-16 Score=136.20 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
++||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999644
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.54 E-value=1e-15 Score=148.05 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999974
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.53 E-value=2e-15 Score=131.48 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (712)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999976543
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.52 E-value=2.4e-15 Score=122.13 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 137 ~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
+|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 56
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.52 E-value=9.5e-16 Score=148.98 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.+++||+|++||.+|+..||..|..++||+..+|.+||.+++|+++||++||||||+|+||+.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567888999999999999999999999999999999999999999999999999999997553
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.4e-15 Score=125.17 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 134 kkR~Rtr~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
.+++|++||.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999885
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-15 Score=132.78 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhh---------------------ccccceeeeecccchhHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gLs~rQVkvWFQNRRaK~ 189 (712)
.+++||.|+.|++.|+.+||..|+.++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678889999999999999999999999999999999999 789999999999999999
Q ss_pred HHHHHH
Q 005143 190 KTQLER 195 (712)
Q Consensus 190 Kk~~~r 195 (712)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986654
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.52 E-value=1.3e-15 Score=145.35 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34667889999999999999999999999999999999999999999999999999999974
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.5e-15 Score=128.60 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
.|+|.+++.+|+.+||..| ..++||+..+|.+||.+|||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4455678899999999999 99999999999999999999999999999999999985
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5e-15 Score=130.11 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 138 Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
+++||.+|+.+||..|..++||+..+|++||.++||+++||++||||||+|+|++.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34599999999999999999999999999999999999999999999999998644
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.51 E-value=4.9e-15 Score=129.23 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 133 kkkR~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
+++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999 99999999999999999999999999999999987
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=7.3e-15 Score=122.38 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
.+++||.|+.|+.+|+..|+..|+. ++||+.+.|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467889999999999999999999 99999999999999999999999999999997543
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.49 E-value=5.2e-15 Score=128.19 Aligned_cols=58 Identities=36% Similarity=0.433 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
+++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 455677999999999999999 9999999999999999999999999999999999974
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.49 E-value=6.8e-15 Score=140.86 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466788999999999999999999999999999999999999999999999999999986
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.48 E-value=2e-15 Score=126.89 Aligned_cols=56 Identities=36% Similarity=0.463 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
..+|..|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35789999999999999999999999999999999999999999999999997553
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.48 E-value=9e-15 Score=121.60 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 141 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.47 E-value=3.5e-15 Score=133.80 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHh------------------hc---cccceeeeecccchhHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 189 (712)
.+++||.|+.||++|+..||..|+.++||+..+|++||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566788999999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 005143 190 KTQLE 194 (712)
Q Consensus 190 Kk~~~ 194 (712)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86554
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=7.1e-15 Score=121.84 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 143 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
+.|+.+||+.| ..++||+..+|.+||++|+|+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999984
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.44 E-value=1.9e-14 Score=138.53 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-14 Score=119.76 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 191 (712)
..+.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998774
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.41 E-value=2.7e-14 Score=138.19 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 131 ~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
..++||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345688899999999999999999999999999999999999999999999999999998654
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=8.4e-14 Score=116.09 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...+++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999997665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.27 E-value=3.6e-13 Score=134.18 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhc---------------------cccceeeeecccchhH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (712)
..+++||.|+.|++.|+..||+.|..++||+..+|++||..|+ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456688899999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 005143 189 MKT 191 (712)
Q Consensus 189 ~Kk 191 (712)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.20 E-value=2.4e-10 Score=114.89 Aligned_cols=200 Identities=10% Similarity=0.137 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-
Q 005143 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (712)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~--~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV- 413 (712)
....+++++.|+++++++... .--|-...+ .+ ..+ |.+..+. .|. .-|..++|-..+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g--~~v----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG--DTV----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC--CEE----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC--CEE----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 356789999999999999863 346976422 22 111 3343321 121 2388889988999998
Q ss_pred HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcc--cccccCceeEEEeeeceecCCeEEEEEEec
Q 005143 414 ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (712)
Q Consensus 414 e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~--SPLvp~Re~~fLRyckq~~~g~waVvDvSl 491 (712)
++|+|.+...+-.+. +..++.++.|... + .+ +-++..+ .++++.|||.++|+++.. ++.++||-.|+
T Consensus 84 ~~~~d~~~r~~Wd~~-~~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 84 EVILQPERMVLWNKT-VTACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp HTTTCHHHHTTTCTT-EEEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHHhCccchhhcccc-cceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 777776533333333 3446777766522 2 23 3345544 578999999999999997 56799999999
Q ss_pred CCCcCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005143 492 DTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (712)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (712)
+.-. .+..+.++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-..++.|+.+|+.+
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 22223589999999999999987 67899999999987654 55 67788877777778899998888754
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.20 E-value=1.5e-10 Score=115.87 Aligned_cols=193 Identities=15% Similarity=0.216 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh-
Q 005143 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 416 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~--~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l- 416 (712)
...+|++||+|++++.+ ++.-|-... +.| ..+ |.+.++.. | -.=|..++|-..+..|.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g--v~v----y~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG--DKV----MSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS--CEE----EEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC--cEE----EEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 57899999999999976 345797752 333 222 33433211 2 33488899999999999998
Q ss_pred cC---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhh-hcccccccCceeEEEeeeceecCCeEEEEEEecC
Q 005143 417 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL-QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (712)
Q Consensus 417 mD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl-~v~SPLvp~Re~~fLRyckq~~~g~waVvDvSld 492 (712)
+| +.+|-.. +..++.++.++. .+ .+.|... ..+.++|+.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4567666 234566665542 22 4555332 223568999999999999985 688999999987
Q ss_pred CCcCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005143 493 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (712)
Q Consensus 493 ~~~~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (712)
.-. -|..+.++|...+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1222358999999999999999988 999999999987755 43 456777777777789999988887
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.17 E-value=8.4e-11 Score=119.92 Aligned_cols=174 Identities=15% Similarity=0.226 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HHhcChhh
Q 005143 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (712)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~lmD~~~ 421 (712)
+++.++.|+++.+.....-|-...+.....| |.+.. +.|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~-------~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKV-------GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECC-------CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEc-------CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 3456777888776544556976433220111 22211 12333345577777777676764 78999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeece-ecCCeEEEEEEecCCCcCCCCC
Q 005143 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (712)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq-~~~g~waVvDvSld~~~~~~~~ 500 (712)
|-..+ ..++.++.|+. .-.++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .|..
T Consensus 101 Wd~~~----~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhh----ceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 98873 44678877762 22566766666665 79999999999985 68999999999998532 2222
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchh
Q 005143 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKP 544 (712)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrp 544 (712)
.++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~ 208 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSK 208 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTT
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHH
Confidence 589999999999999999999999999999987 457766533
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=109.06 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHHHhh
Q 005143 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
+-|+.+++..|+.+|.+ ++||+..+|.+||.++||+++||++||||||.|+|+...+.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999987 899999999999999999999999999999999998765543
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=124.43 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhc---------------------cccceeeeecccchhH
Q 005143 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (712)
Q Consensus 130 ~~~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (712)
..+++||.|+.|++.|+.+||..|..++||+..+|++||..|+ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4456788889999999999999999999999999999999998 7899999999999987
Q ss_pred H
Q 005143 189 M 189 (712)
Q Consensus 189 ~ 189 (712)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.8e-11 Score=101.50 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhH
Q 005143 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (712)
Q Consensus 143 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (712)
.+|+..||.+|..+++|+.+++..||..+||++++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.98 E-value=3.8e-11 Score=128.93 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHH
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (712)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45567899999999999999999999999999999999999999999999999876
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.93 E-value=7.1e-09 Score=102.39 Aligned_cols=151 Identities=16% Similarity=0.236 Sum_probs=116.9
Q ss_pred eeccceeEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEE
Q 005143 398 ASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (712)
Q Consensus 398 ASR~sgvV~-m~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fL 473 (712)
.-|..++|- ..+..+.+.|+| ..+|... +...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568889995 999999999999 5677766 455566654 232 4788889888886 99999999
Q ss_pred eeeceec-CC--eEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccch
Q 005143 474 RFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (712)
Q Consensus 474 Ryckq~~-~g--~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 550 (712)
|+++.++ +| .|+|+-.|++.-. .+..+.++|...+++|++|++..+|.|+||++-|++.. ..+|.- |++..+
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~ 192 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAA 192 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHH
Confidence 9999875 66 5999999987432 22223589999999999999999999999999999987 456543 445555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005143 551 GFGAQRWVATLQRQCECL 568 (712)
Q Consensus 551 afGA~rWlatLqR~cerl 568 (712)
.-++..++..|+++|+.+
T Consensus 193 ~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 193 KNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HTHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 566778889998888743
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.85 E-value=2.5e-08 Score=100.18 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=113.0
Q ss_pred eeccceeEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhc-ccccccCceeEEE
Q 005143 398 ASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFL 473 (712)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v-~SPLvp~Re~~fL 473 (712)
.-|..++|-..+..|.+.|+|.. +|-.. +..++.++.|+ +.-.+.|.-+.- +-|+|..|||.++
T Consensus 68 ~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~----~~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~ 135 (224)
T 1jss_A 68 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRL----MTSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDF 135 (224)
T ss_dssp EEEEEEEESSCHHHHHHHHSSSTTHHHHCSS----EEEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccccccccc----eeeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEE
Confidence 44888899899999999999965 77666 23356665554 122455555543 3457999999999
Q ss_pred eeeceecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchh
Q 005143 474 RFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMG 551 (712)
Q Consensus 474 Ryckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~a 551 (712)
|+.++.++| ++|+-+|++.-.. .+.++|....++|++|+++++| .|+|||+-|++.--+ +| +.+++..+.
T Consensus 136 r~~~~~~~~-~vi~~~Sv~hp~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~ 207 (224)
T 1jss_A 136 SYTVGYEEG-LLSCGVSVEWSET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMA 207 (224)
T ss_dssp EEEEEETTE-EEEEEEECCCCCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHH
T ss_pred EEEEEcCCe-EEEEEeeeecCCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHH
Confidence 999998777 7889999884322 2358999999999999999875 899999999987654 44 466777777
Q ss_pred HHHHHHHHHHHHHHH
Q 005143 552 FGAQRWVATLQRQCE 566 (712)
Q Consensus 552 fGA~rWlatLqR~ce 566 (712)
-+...++..|+.+|+
T Consensus 208 ~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 208 STLANFYSDLRKGLR 222 (224)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHh
Confidence 777888999987765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.68 E-value=5.6e-08 Score=100.74 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=95.7
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeEEEeeec
Q 005143 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (712)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SP--Lvp~Re~~fLRyck 477 (712)
|..++|-..+..|.+.|+|.+...+=-+.+ ..++.++-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 778889999999999999986444433332 34666666662 1 3566 6667775 79999999999998
Q ss_pred ee-cCCe-EEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005143 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (712)
Q Consensus 478 q~-~~g~-waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (712)
.. .+|. ++|+-+|++.-. -+..+.++|...+|+|++|+++++|.|+||++-|++- ..++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCce
Confidence 74 4774 999999987432 1222358999999999999999999999999988873 444443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.50 E-value=8.9e-07 Score=85.88 Aligned_cols=152 Identities=14% Similarity=0.052 Sum_probs=109.5
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeec
Q 005143 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (712)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyck 477 (712)
.=|..++|-..+.++.+.|+|.+...+--|. +...+||.. .. + -.++|.++..+-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4677889999999999999998776665555 455666665 21 2 3456777776655 7899999999999
Q ss_pred eecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 005143 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (712)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 557 (712)
...+|...|+=.+.. ...|..+.++|++.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..
T Consensus 97 ~~~~g~~~i~~~~~~--~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEAVP--DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEECT--TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEcCC--CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHH
Confidence 988887655433321 11122224799999999999999 99999999999998763 3443 34555555666778
Q ss_pred HHHHHHHHHH
Q 005143 558 VATLQRQCEC 567 (712)
Q Consensus 558 latLqR~cer 567 (712)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8888888764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.41 E-value=1.6e-08 Score=74.95 Aligned_cols=22 Identities=45% Similarity=0.835 Sum_probs=18.9
Q ss_pred ceeeeecccchhHHHHHHHHhh
Q 005143 176 RQVKFWFQNRRTQMKTQLERHE 197 (712)
Q Consensus 176 rQVkvWFQNRRaK~Kk~~~r~e 197 (712)
+||+|||||||+||||++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998776543
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.25 E-value=6.3e-06 Score=84.02 Aligned_cols=200 Identities=12% Similarity=0.212 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHH
Q 005143 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (712)
Q Consensus 340 ~~~lA~~Am~El~~la~~---~eplWi~~~~~~p~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~ 415 (712)
+.++++..+.|.+..|.. ++.-|-...+.+ . .++|.+.. ...|...-.=|..++|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~--g-------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEG--E-------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEET--T-------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCC--C-------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455566666666666543 235687643221 0 12332211 01122111235556555 678999999
Q ss_pred hcCh---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec----C--CeEEE
Q 005143 416 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 486 (712)
Q Consensus 416 lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~----~--g~waV 486 (712)
|+|. .+|-.. +..++.++.|..+ . .++|..+..|.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i~~~------~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETLADN------A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEEETT------E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEcCCC------C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9995 466655 3446776666521 2 6788888888885 889999999999883 3 59999
Q ss_pred EEEecCCCcCCCCCCCccceee---cCCcceEeecCC--------CccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 005143 487 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 555 (712)
Q Consensus 487 vDvSld~~~~~~~~~~~~~~rr---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~ 555 (712)
+..|++.-. .+..+.++|... +.+|++|++..+ +.|+|||+-|++.-- .+|.- +++.....+.-
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~ 234 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYP 234 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhcccc
Confidence 999998532 122224788884 678999998733 579999999998763 34442 34555566777
Q ss_pred HHHHHHHHHHHHH
Q 005143 556 RWVATLQRQCECL 568 (712)
Q Consensus 556 rWlatLqR~cerl 568 (712)
..+..|+.+|+..
T Consensus 235 ~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 235 KFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888744
No 88
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.05 E-value=0.13 Score=45.34 Aligned_cols=139 Identities=9% Similarity=-0.052 Sum_probs=79.6
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 481 (712)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|..--+. +.. + +.+.-+..++... ++
T Consensus 7 ~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~~~~~--~~~--~--g~~~~~~~~~~~~-~~ 71 (147)
T 2d4r_A 7 ERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTRSRWV--AVA--M--GKKVRWLEEEEWD-DE 71 (147)
T ss_dssp EEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEEEEEE--EEE--T--TEEEEEEEEEEEE-TT
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccEEEEE--EEe--C--CceEEEEEEEEEc-CC
Confidence 3456667889999999999999999874 4455665432 23211111 111 1 2223344455432 33
Q ss_pred CeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 005143 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (712)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatL 561 (712)
+.-++.. .+++ +. ..+.. -.-+++.++| |+|+|..+.+..-..+..++.+++..-+.=+.++.++.|
T Consensus 72 ~~~i~~~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (147)
T 2d4r_A 72 NLRNRFF-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 138 (147)
T ss_dssp TTEEEEE-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEE-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211111 1121 10 00111 1335677888 999999888876444555666666555556788899999
Q ss_pred HHHHHHH
Q 005143 562 QRQCECL 568 (712)
Q Consensus 562 qR~cerl 568 (712)
++.||..
T Consensus 139 k~~~e~~ 145 (147)
T 2d4r_A 139 EERVLAA 145 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9998874
No 89
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=93.40 E-value=0.15 Score=50.57 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh
Q 005143 586 AGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL 665 (712)
Q Consensus 586 ~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL 665 (712)
......++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+.+ |.++-|.+. ++++|+.||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~~----~~~~k~~~~--v~~~~~~v~~~l 86 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEFP----GNLYRGEGI--VYGTLEEVWDCV 86 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSSS----SEEEEEEEE--ESSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCCC----CcEEEEEEE--ECCCHHHHHHHH
Confidence 334456999999999888876533 3689977 3 3578999998763322 444444444 499999999999
Q ss_pred --hccccchhhhhh
Q 005143 666 --RDERLRSEWDIL 677 (712)
Q Consensus 666 --rd~~~R~eWdil 677 (712)
.|...|.+||-.
T Consensus 87 ~~~d~~~r~~Wd~~ 100 (231)
T 2r55_A 87 KPAVGGLRVKWDEN 100 (231)
T ss_dssp CC--CCSHHHHCTT
T ss_pred HhhCcchhhhhccc
Confidence 999999999964
No 90
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=90.82 E-value=2.3 Score=40.24 Aligned_cols=142 Identities=8% Similarity=0.027 Sum_probs=78.7
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh--cccccccCceeEEEeeec
Q 005143 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 477 (712)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~--v~SPLvp~Re~~fLRyck 477 (712)
..+.+|.-.+.++-+++-|.++|-+.||. |...+|++.+. . .+.+.|. +-- -- .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~~------~--~~~~rl~~~~~~-~G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRDD------D--KVTFRLTMHPDA-DG-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEECS------S--EEEEEEEECCCT-TS-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecCC------C--EEEEEEEEEecc-Cc-eEEEEEEEEEE
Confidence 34566777888999999999999999998 57778887541 1 1222322 211 11 24444556643
Q ss_pred eecCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 005143 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (712)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 557 (712)
. .++..+ +..+ +.+++ | +.+=.-..+.+.++| |+|+|.-+.++++.....+ +.+..-+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 2 233222 2221 11222 2 333344556777775 9999999999976522111 00111111112334
Q ss_pred HHHHHHHHHHHHH
Q 005143 558 VATLQRQCECLAI 570 (712)
Q Consensus 558 latLqR~cerla~ 570 (712)
|+.|++.+|+.+.
T Consensus 137 L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 137 MALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 7778777777654
No 91
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=89.38 E-value=3.3 Score=39.57 Aligned_cols=144 Identities=10% Similarity=0.068 Sum_probs=77.4
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 480 (712)
.+.+|.-.+..+-+.+-|.++|-+.||. +...+|++.+. +. ..+...+++..--. .++|..-|.+. .
T Consensus 7 ~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~d--~ 73 (169)
T 3tvq_A 7 NSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVPD--K 73 (169)
T ss_dssp EEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEEE--G
T ss_pred EEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEEc--C
Confidence 4556666788999999999999999999 46667776432 11 11111112222111 22332222211 2
Q ss_pred CCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005143 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (712)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (712)
++..+.... +.+++ | +.+=.-.-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+.
T Consensus 74 ~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~~ 139 (169)
T 3tvq_A 74 GSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANMER 139 (169)
T ss_dssp GGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHHH
Confidence 222221111 11112 2 223334557888888 9999999999975521 11111222222223456899
Q ss_pred HHHHHHHHHHH
Q 005143 561 LQRQCECLAIL 571 (712)
Q Consensus 561 LqR~cerla~~ 571 (712)
|++.+|+.+..
T Consensus 140 LK~~aE~~~~~ 150 (169)
T 3tvq_A 140 IKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhhh
Confidence 99999988764
No 92
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=89.21 E-value=3.7 Score=38.61 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=81.5
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeecee
Q 005143 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (712)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~ 479 (712)
..+.+|.-.+..+-+.+-|.+.|-+.+|. +..++|+..+. ++ +.+++.+.-. ..++-+.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 34556677888999999999999999999 56677776432 11 2233332211 22333333443332
Q ss_pred cCCeEEEEEEecCCCcCCCCCCCccceeecCCcce-EeecCCCccEEEEEEeeeeccccccccchhhhcc---------c
Q 005143 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIIS---------G 549 (712)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGcl-Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~S---------g 549 (712)
++.. +.. ..++. +++ | +.+ .|.. +.+.++|.|+|+|.-+.++....+..++.++..- -
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f---~~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~ 141 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----V---GHM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAV 141 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----E---EEE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCC----h---hhc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHH
Confidence 2221 111 11110 111 1 001 1222 5666778899999999999887777777665421 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005143 550 MGFGAQRWVATLQRQCECLAI 570 (712)
Q Consensus 550 ~afGA~rWlatLqR~cerla~ 570 (712)
+.=+.+.-|+.|++.+|+.+.
T Consensus 142 l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 142 VERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHh
Confidence 222234467777777777655
No 93
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=88.00 E-value=1 Score=41.03 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=80.9
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 480 (712)
.+..|...+..+-+.+.|.++|-+.+|.+ ..++|+..+..|. |. -+.+++.+- .-+.++-+..|+..+-.
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~~ 75 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDKD 75 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcCC
Confidence 45566778889999999999999999995 4456665332211 11 133444442 22456667778775433
Q ss_pred CCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005143 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (712)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (712)
+ ..|.-..+++ +.. .+...++ +++.++| |+|++.-+.|+... ++..+...-+.-.+++.+.+
T Consensus 76 ~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~ 137 (148)
T 1t17_A 76 A--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIAC 137 (148)
T ss_dssp T--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred C--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHHH
Confidence 3 2233333442 210 0112232 4567778 99999988887522 33344433333456777788
Q ss_pred HHHHHHHH
Q 005143 561 LQRQCECL 568 (712)
Q Consensus 561 LqR~cerl 568 (712)
+.+.|+.+
T Consensus 138 f~~r~~~~ 145 (148)
T 1t17_A 138 FEARAQQL 145 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 94
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=87.72 E-value=0.75 Score=45.53 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccc
Q 005143 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 671 (712)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R 671 (712)
+.+.+...+..|-... ..+|... .. .++|+|.++...+. .|-+.=+ ..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~k~--~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLYKA--QGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEEEE--EEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEEEE--EEEEeCCHHHHHHHHhCcccc
Confidence 4444444444443322 5679876 32 47899999865332 2344444 444599999999999999999
Q ss_pred hhhhhh
Q 005143 672 SEWDIL 677 (712)
Q Consensus 672 ~eWdil 677 (712)
.+||-.
T Consensus 93 ~~Wd~~ 98 (224)
T 1jss_A 93 LDWDRL 98 (224)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 999954
No 95
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=87.52 E-value=1.2 Score=43.79 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hcc
Q 005143 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDE 668 (712)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL-rd~ 668 (712)
..-.++++.-+..+..-+. ...+|... . ...++|.|.+++. +|. |.++=|. .-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~k~~--~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVFRLE--VVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEEEEE--EEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEEEEE--EEEcCCHHHHHHHHHhcc
Confidence 3445566655555554443 35689976 2 1246788999984 332 4555444 44599999999999 488
Q ss_pred ccchhhhhh
Q 005143 669 RLRSEWDIL 677 (712)
Q Consensus 669 ~~R~eWdil 677 (712)
..|.+||-.
T Consensus 79 ~~r~~Wd~~ 87 (221)
T 3p0l_A 79 EAMGEWNPN 87 (221)
T ss_dssp GGTTTSCTT
T ss_pred chhhhcCcc
Confidence 899999964
No 96
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=87.40 E-value=0.42 Score=45.65 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=42.6
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
++|... . ..++|+|.+++.. |.+ +..-.+..-++.||+.||++|.|...|.+||-.
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh
Confidence 579876 3 2578999999862 221 223455667789999999999999999999964
No 97
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=86.90 E-value=0.32 Score=47.28 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 677 (712)
...+|... .. .++|+|..++.. +. | +..-.+..-++ +||+.||++|.|...|.+||-.
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~---~~--~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~ 84 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDK---KT--G-LYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY 84 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEET---TT--T-EEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT
T ss_pred CCCCcEEE-EE--CCCeEEEEeccC---CC--C-cEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH
Confidence 45689987 32 467999998752 22 2 34556777788 9999999999999999999964
No 98
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.82 E-value=0.24 Score=41.49 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecc
Q 005143 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (712)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 183 (712)
.+.|+.+|+..+.+.......|..+.+|+..|||-||-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999994
No 99
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=84.19 E-value=4 Score=41.88 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCC-Ccc--ChhhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEE
Q 005143 554 AQRWVATLQRQCECLAILMSTSVSARDH-TAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 630 (712)
Q Consensus 554 A~rWlatLqR~cerla~~~~~~ip~~d~-~~i--~~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~ 630 (712)
-||.-.++.|-==||.-- .|-++.. .+- .++-+.+=+.|+.-.+.+...-. ...+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHHH---TCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhhh---ccCCCEEE-e--cCCCeEEE
Confidence 356655555554444332 3322222 221 34566667777766665544322 46789976 3 25789999
Q ss_pred EecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 631 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 631 ~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
++.. +| .++-+...-+++||+.||++|.|...|.+||-.
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~ 119 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKH 119 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhh
Confidence 9642 22 344566667899999999999999999999964
No 100
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.66 E-value=0.2 Score=43.14 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecc
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 183 (712)
..||.++....-..+... ......++|+.+|+++..|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 468888776655555322 012367899999999999999974
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.06 E-value=2.8 Score=36.07 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=31.8
Q ss_pred hhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhHhhhh
Q 005143 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (712)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (712)
..-..|+-+.+.|+.+|..+.+.... ..-....|..||.+||+|.. |++++.+|
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e--------------~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555543320 01134458999999999985 66666655
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=80.33 E-value=12 Score=34.72 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=79.4
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceec
Q 005143 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (712)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 480 (712)
.+.+|.-.+..+-+.+.|.++|...||..+.- +-.. +|..+.+.+++.+-. ...|+-|..||...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 35567778999999999999999999986543 1121 233334445555433 2348888889876543
Q ss_pred CCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005143 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (712)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (712)
+. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|.. -.+..++..++..-+.-.+++-+.+
T Consensus 78 ~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~a 144 (161)
T 3p9v_A 78 AG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDT 144 (161)
T ss_dssp TT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22 22221 122 10 1111123357778888999999888886 1233344433322223345666665
Q ss_pred HHHHHH
Q 005143 561 LQRQCE 566 (712)
Q Consensus 561 LqR~ce 566 (712)
..+-++
T Consensus 145 f~~ra~ 150 (161)
T 3p9v_A 145 YMANLK 150 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 103
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=78.74 E-value=2 Score=43.21 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccc
Q 005143 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 669 (712)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl-~A~tS~wLp-v~p~~vf~FLrd~~ 669 (712)
+-++.+..+..+-..+ ....+|... . ..++|+|.+++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444333 234689977 3 25679999998632 2 3321 123333456 89999999999999
Q ss_pred cchhhhhh
Q 005143 670 LRSEWDIL 677 (712)
Q Consensus 670 ~R~eWdil 677 (712)
.|.+||-.
T Consensus 98 ~r~~Wd~~ 105 (255)
T 2e3n_A 98 VRNDWETT 105 (255)
T ss_dssp GHHHHCCS
T ss_pred hHhhhhhh
Confidence 99999953
No 104
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=73.74 E-value=3.6 Score=40.51 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHH-Hhhhcc
Q 005143 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 668 (712)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~vf-~FLrd~ 668 (712)
+.-++.++.....|-.-+. ...+|... .. ..++|+|.++...+ .|.+.-+.+ -+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~k~~~--~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTFILKT--FLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEEEEEE--EESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceEEEEE--EecCCHHHHHHHHHhCc
Confidence 3444444444444333332 24589877 32 13578998887521 244444444 4599999999 999999
Q ss_pred ccchhhhhh
Q 005143 669 RLRSEWDIL 677 (712)
Q Consensus 669 ~~R~eWdil 677 (712)
..|.+||-.
T Consensus 90 ~~r~~Wd~~ 98 (229)
T 1em2_A 90 ERMVLWNKT 98 (229)
T ss_dssp HHHTTTCTT
T ss_pred cchhhcccc
Confidence 999999964
No 105
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=72.52 E-value=55 Score=29.52 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=61.8
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEE--Eeeecee
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 479 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~f--LRyckq~ 479 (712)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| .. .+.+.+ ++-+.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~---~~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KY---KADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EE---EEEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eE---EEEEEE--EeeeEEEEEEEEEEEEecC
Confidence 3456667889999999999999999874 556666422 11 111111 1112222221 2343334
Q ss_pred cCCeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 005143 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (712)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 546 (712)
+...|++.-..-+. .+ +.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555444332221 00 111 1111335666778899999887776433 344555555
No 106
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=71.49 E-value=1.5 Score=44.92 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhHHHHH
Q 005143 239 EEQHLRIENARLKDELD 255 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~ 255 (712)
+.++|+.||++||+.|.
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44457778888877543
No 107
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.28 E-value=9.2 Score=33.50 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=41.2
Q ss_pred ccccceeeeecccchhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhH
Q 005143 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (712)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 251 (712)
||+..+|.-|=|-||+-.-+.........-.++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777666666655433333333333333445555556555543 5667888999999
Q ss_pred HHHHHHhHh
Q 005143 252 DELDRVCAL 260 (712)
Q Consensus 252 ~el~r~~~~ 260 (712)
.|++.+..-
T Consensus 76 ~e~d~~k~k 84 (90)
T 2wt7_B 76 RERDAYKVK 84 (90)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.35 E-value=14 Score=30.05 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=31.3
Q ss_pred HHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
++.....+..+.+.|..+|..|+. +...|..|+..||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~---------------------~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKE---------------------RADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHh
Confidence 455667788889999999998887 34568888888887654
No 109
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.88 E-value=16 Score=29.25 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH
Q 005143 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (712)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (712)
+......|..+.+.|..+|..|.. +...|+.|++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~---------------------~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQS---------------------EVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Confidence 444566788888888888888876 3456777777777654
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.36 E-value=13 Score=32.34 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.8
Q ss_pred hHHHHhhHHHHHhhHhHHh
Q 005143 199 SLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 199 ~~l~~en~~L~~en~~l~e 217 (712)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665554
No 111
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.97 E-value=14 Score=32.63 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCc
Q 005143 221 NPICTNCGGPAI 232 (712)
Q Consensus 221 ~~~C~~Cggp~~ 232 (712)
...||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999998764
No 112
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.01 E-value=9.7 Score=25.64 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 005143 241 QHLRIENARLKDELDRVC 258 (712)
Q Consensus 241 q~L~~ENa~Lk~el~r~~ 258 (712)
++|...|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468899999999987553
No 113
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.37 E-value=22 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.2
Q ss_pred HhhhhHHHHhhHHHHHhhHhHHh
Q 005143 195 RHENSLLRQENDKLRAENMSIRD 217 (712)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (712)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777776665
No 114
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=49.18 E-value=11 Score=35.71 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.6
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999974
No 115
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=48.29 E-value=22 Score=35.43 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=37.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHH-HHhhhccccchhhhhhc
Q 005143 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILS 678 (712)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~g~p~G~Vl~A~tS~wLpv~p~~v-f~FLrd~~~R~eWdils 678 (712)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||-.+
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~ 105 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDF 105 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTB
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhh
Confidence 45579877 3 3578999999852 2332 22335566678777665 567777 99999643
No 116
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.14 E-value=30 Score=29.37 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=7.8
Q ss_pred HHHhhHHHHHhhHhHH
Q 005143 201 LRQENDKLRAENMSIR 216 (712)
Q Consensus 201 l~~en~~L~~en~~l~ 216 (712)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554443
No 117
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.47 E-value=57 Score=24.77 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=28.4
Q ss_pred hhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhHhh
Q 005143 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 198 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (712)
+..++....+|+.+|..+.. ++|.|..--+.|++|+.|+..-.
T Consensus 5 naylrkkiarlkkdnlqler---------------------deqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLER---------------------DEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhh---------------------hHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543 66777777788888888876543
No 118
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=41.68 E-value=10 Score=32.73 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.9
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
..++.++.||+.||++|.|.....+|.-
T Consensus 5 ~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 5 RAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 4678889999999999999999999963
No 119
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.36 E-value=38 Score=28.21 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.7
Q ss_pred HHHHHhHHHHHHH
Q 005143 245 IENARLKDELDRV 257 (712)
Q Consensus 245 ~ENa~Lk~el~r~ 257 (712)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 120
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.27 E-value=79 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=17.7
Q ss_pred HHhhhhHHHHhhHHHHHhhHhHHhh
Q 005143 194 ERHENSLLRQENDKLRAENMSIRDA 218 (712)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea 218 (712)
+......|..+.+.|..+|..|+..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888877763
No 121
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=37.86 E-value=19 Score=31.92 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchh
Q 005143 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (712)
Q Consensus 137 ~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 187 (712)
+|.++|.++...+-..+.++.... ..++|+.+|++...|.-|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999888877775555443 346899999999999999765443
No 122
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=36.79 E-value=12 Score=34.04 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.2
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
-..++.++.||++||++|.|.....+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 123
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=36.39 E-value=13 Score=28.78 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecc
Q 005143 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (712)
Q Consensus 139 tr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 183 (712)
..||+++.......+... ........++|+++|+++.+|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 468888877775555433 22122266899999999999999964
No 124
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.30 E-value=12 Score=33.13 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005143 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (712)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (712)
.-+++-.|....+++..||.+++..-... | .-..++..+..+|+.||.+|+.|-+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666542211 0 1111233466788889998888754
No 125
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=36.27 E-value=1.3e+02 Score=28.01 Aligned_cols=111 Identities=12% Similarity=0.162 Sum_probs=59.7
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 481 (712)
+..|...+.++-++|.|-..| .-+|.++..+ +++ .|.+++.-|++..+ . . ..+| .++.|-...--
T Consensus 7 si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~---e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~~ 71 (160)
T 3p51_A 7 SIVVDAPVERVWSRIRNFHDF-SWAPSLIKSC---KKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIERR 71 (160)
T ss_dssp EEEESSCHHHHHHHHCCTTCC-TTCTTTCCCE---EEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTTE
T ss_pred EEEECCCHHHHHHHHhCcCCC-eEccCceEEE---EEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCcE
Confidence 445566788999999999999 9999885432 333 35444445787765 1 1 1233 33333211111
Q ss_pred CeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeecc
Q 005143 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 535 (712)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~-nG~skVtwVeH~e~d~ 535 (712)
=+|-|++-.+-. .. . ..+..=+=.-+.+.+ +|.|.|+|.-.++.++
T Consensus 72 ~sY~ii~g~l~~---~~--~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 72 IMYSMDEGPSPV---SS--G---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEECSTTS---ST--T---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEecCCCcc---cc--c---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 145555521100 00 0 011111222245555 7899999998888764
No 126
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=36.04 E-value=14 Score=33.08 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhh
Q 005143 647 SAATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
....++.++.||++||++|.|.....+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678899999999999999999999996
No 127
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=35.33 E-value=17 Score=30.42 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeec
Q 005143 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (712)
Q Consensus 135 kR~Rtr~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 182 (712)
++.+..|+.++....-..+... ....++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 4455678998866555556432 135688999999999999885
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.86 E-value=81 Score=27.15 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHhHhhh
Q 005143 242 HLRIENARLKDELDRVCALAG 262 (712)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~~~ 262 (712)
.|..|++.||+|++++..++.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888877764
No 129
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=33.86 E-value=19 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
..|+.++.||+.||+++.|-.+..+|---
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~ 33 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPW 33 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCC
Confidence 46888999999999999999999999643
No 130
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.35 E-value=83 Score=24.66 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005143 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (712)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (712)
.++.++..|.+.|.+|.+.+. .-+.|-..|++||+++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 466777777777777777553 45667788999988763
No 131
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=33.09 E-value=22 Score=32.55 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.4
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
....|+-++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 345788899999999999999999999963
No 132
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.06 E-value=39 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhHHHHHHHhHhh
Q 005143 240 EQHLRIENARLKDELDRVCALA 261 (712)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (712)
...|..+|..|.+|+.|+..+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 4578999999999999998875
No 133
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=32.95 E-value=3.9 Score=36.91 Aligned_cols=20 Identities=45% Similarity=0.476 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhHHHHHHHh
Q 005143 239 EEQHLRIENARLKDELDRVC 258 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (712)
+.++|..||+.|+.|++++.
T Consensus 73 e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 73 EVEKLASENASMKLELDALR 92 (107)
T ss_dssp TTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55567788888888877644
No 134
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.14 E-value=75 Score=26.40 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=8.5
Q ss_pred hHHHHHHHHHhHHHHH
Q 005143 240 EQHLRIENARLKDELD 255 (712)
Q Consensus 240 ~q~L~~ENa~Lk~el~ 255 (712)
.+.|+.++..|..|+.
T Consensus 52 n~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 52 NDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 135
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.94 E-value=14 Score=26.77 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchh
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 187 (712)
.++.++...+...+... ....++|+.+|++...|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666665656543 23568999999999999999865443
No 136
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=31.34 E-value=28 Score=30.48 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=24.7
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
...+..++.||++||++|-|..+..+|
T Consensus 7 i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 7 AQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 456788899999999999999999999
No 137
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=29.77 E-value=30 Score=30.62 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.3
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
..+..++.||++||+.|-|.....+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999993
No 138
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=28.93 E-value=2.9e+02 Score=24.12 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.7
Q ss_pred eEEechhhHHHHhcChhhhhhhcccc
Q 005143 404 MVIINSLALVETLMDPNRWAEMFPCM 429 (712)
Q Consensus 404 vV~m~~~~LVe~lmD~~~W~~~Fp~i 429 (712)
.|...+.++-+.|.|.+.|.+-+|.+
T Consensus 20 ~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 20 EVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 45556788999999999999999975
No 139
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.38 E-value=53 Score=33.71 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhHHHHHHHh
Q 005143 240 EQHLRIENARLKDELDRVC 258 (712)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~ 258 (712)
.++++.|..+||+||+++.
T Consensus 77 Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3457778999999999986
No 140
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=28.24 E-value=29 Score=31.11 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
-..+.-++.||++||+.|-|..+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456778999999999999999999993
No 141
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.24 E-value=24 Score=29.63 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.+++.|...|...|-.. ..-.++|..+|+++..|+.+...-|.|.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888887755332 2467899999999999998876555555543
No 142
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=28.23 E-value=32 Score=32.08 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=26.7
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005143 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (712)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 676 (712)
....|+.++.||+.||+++.|-....+|--
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P 35 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIFP 35 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHCS
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhCc
Confidence 456789999999999999999999999953
No 143
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.20 E-value=82 Score=24.74 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHhHHHHHH
Q 005143 239 EEQHLRIENARLKDELDR 256 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r 256 (712)
+...|+.||+.||.++..
T Consensus 20 d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455555555544443
No 144
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.19 E-value=54 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHHHHHHHhHhhhhc
Q 005143 239 EEQHLRIENARLKDELDRVCALAGKF 264 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (712)
+.+-|+.||..||+||+.-+....|+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
No 145
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.24 E-value=1.4e+02 Score=32.48 Aligned_cols=23 Identities=35% Similarity=0.237 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHhHh
Q 005143 238 LEEQHLRIENARLKDELDRVCAL 260 (712)
Q Consensus 238 ~~~q~L~~ENa~Lk~el~r~~~~ 260 (712)
-+.++|+.||++|+++++.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhh
Confidence 46778999999999998876543
No 146
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.05 E-value=76 Score=25.66 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhHHHHhhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005143 185 RRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (712)
Q Consensus 185 RRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (712)
||++.| +......|..+.+.|..+|..|.. |.+.|+++|..
T Consensus 22 rrsR~R---K~~~~~~Le~~v~~L~~eN~~L~~----------------------------ev~~Lr~~l~~ 62 (63)
T 2dgc_A 22 RRSRAR---KLQRMKQLEDKVEELLSKNYHLEN----------------------------EVARLKKLVGE 62 (63)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHC---
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHhc
No 147
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.83 E-value=32 Score=24.19 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeeccc
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 184 (712)
.++.++...+...+... + ...++|+.+|++...|+.|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775555556432 2 3668899999999999988753
No 148
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.64 E-value=2.4 Score=40.19 Aligned_cols=30 Identities=3% Similarity=-0.092 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCH
Q 005143 132 PPRKKRYHRHTPQQIQELESLFKECPHPDE 161 (712)
Q Consensus 132 ~kkkR~Rtr~T~~Ql~~LE~~F~~~~~Ps~ 161 (712)
.+.||.|+.|+.+|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345778889999999999999999999875
No 149
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=23.34 E-value=30 Score=30.77 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 467788999999999999999999995
No 150
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=23.27 E-value=49 Score=29.72 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
...++-++.||++||++|.|-....+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3467888999999999999998888995
No 151
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.26 E-value=61 Score=28.75 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (712)
.+++.|...+...|... ..-.++|..+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888875433 23678999999999999999877666666543
No 152
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=23.18 E-value=30 Score=30.44 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eWd 675 (712)
.+.-++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 153
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=23.01 E-value=32 Score=31.29 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=24.0
Q ss_pred EEeeccccChhHHHHhhhccccchhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
..+..++.||++||++|-|.....+|
T Consensus 13 ~~~~~i~Ap~e~Vw~altd~~~~~~W 38 (152)
T 2kew_A 13 TKSITLEAPIQKVWETVSTSEGIAKW 38 (152)
T ss_dssp EEEEEECSCHHHHHHHSSSSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHhCHHHHHHh
Confidence 46788999999999999999999999
No 154
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.34 E-value=2.8e+02 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHHH
Q 005143 242 HLRIENARLKDELDRV 257 (712)
Q Consensus 242 ~L~~ENa~Lk~el~r~ 257 (712)
.|..||+.|+.+++.+
T Consensus 47 ~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 47 ELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554443
No 155
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.29 E-value=1.5e+02 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=20.3
Q ss_pred hhhHHHHhhHHHHHhhHhHHhhhcC
Q 005143 197 ENSLLRQENDKLRAENMSIRDAMRN 221 (712)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~ 221 (712)
....|.++..+|+-||+.|+..+.+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999999999999975
No 156
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.21 E-value=45 Score=29.60 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (712)
.+++.|...+. .|- ....-.++|+.+|+++..|+.+.+.=|.|.|+.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46777777777 332 223467899999999999988776555554443
No 157
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=21.80 E-value=33 Score=30.60 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=23.7
Q ss_pred EEeeccccChhHHHHhhhccccchhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
..+.-++.||++||++|-|.....+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45677899999999999999999999
No 158
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.59 E-value=52 Score=33.46 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHhHhh
Q 005143 243 LRIENARLKDELDRVCALA 261 (712)
Q Consensus 243 L~~ENa~Lk~el~r~~~~~ 261 (712)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567788888999988775
No 159
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=21.36 E-value=4.4e+02 Score=23.54 Aligned_cols=115 Identities=8% Similarity=-0.053 Sum_probs=56.3
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeEEEeeeceecC
Q 005143 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (712)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 481 (712)
+.+|...+..+-+.+.|.+.|-+.+|.+ ..++++..+ ... +.++ .|.=+.+.-+..||+....+
T Consensus 9 s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~~-------~~~-~~~~----~~~G~~~~~~~~~v~e~~p~ 72 (155)
T 3ggn_A 9 AVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDDK-------RSR-WTVE----APAPLGTVSWEAELTADEPG 72 (155)
T ss_dssp EEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSSS-------EEE-EEEE----CCTTTCEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecCC-------eeE-EEEE----ecCCcceEEEEEEEEEecCC
Confidence 4556667889999999999999998875 455666421 111 1111 12212344456677665444
Q ss_pred CeEEEEEEecCCCcCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeeccccccccchhh
Q 005143 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPL 545 (712)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~-nG~skVtwVeH~e~d~~~vh~lyrpl 545 (712)
-.. +-.++++.. .. .... +-.++.+ +|.|+||+.-+.+....-+-.++-++
T Consensus 73 ~~i--~~~~~~g~~----~~-~~g~------~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~ 124 (155)
T 3ggn_A 73 KRI--AWRSLPGAR----IE-NSGE------VLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARM 124 (155)
T ss_dssp TEE--EEEECTTCS----SC-EEEE------EEEEECSSSSCEEEEEEEEEC-------------
T ss_pred CEE--EEEECCCCC----cc-eEEE------EEEEECCCCCceEEEEEEEEECCCcHHHHHHHHH
Confidence 432 233333310 00 1111 2246674 56899999766665433333343333
No 160
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=21.12 E-value=48 Score=31.33 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=26.8
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhh
Q 005143 648 AATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (712)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 677 (712)
...|+.++.||+.||+++.|-....+|---
T Consensus 5 v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~ 34 (169)
T 3tvq_A 5 TDNSIVVNAPFELVWDVTNDIEAWPELFSE 34 (169)
T ss_dssp EEEEEEESSCHHHHHHHHTCGGGHHHHCTT
T ss_pred EEEEEEecCCHHHHHHHHHhhhHHHHHHhh
Confidence 467899999999999999999999999743
No 161
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.04 E-value=2.7e+02 Score=24.68 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=33.5
Q ss_pred hhhHHHHhhHHHHHhhHhHHhhhcCCC---CCCCCCCC-ccCCC---ChhhHHHHHHHHHhHHHHHHHhHhhhh
Q 005143 197 ENSLLRQENDKLRAENMSIRDAMRNPI---CTNCGGPA-IIGDI---SLEEQHLRIENARLKDELDRVCALAGK 263 (712)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~---C~~Cggp~-~~~~~---~~~~q~L~~ENa~Lk~el~r~~~~~~~ 263 (712)
+-..|+.++++|+.++..|.-.+.+.. ..+|...- .+-.. +...++...+-..|++|+++++....+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444321 22332111 11111 123445667778888888888766543
No 162
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.76 E-value=1.9e+02 Score=23.10 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhHHHHHHHhHhhhh
Q 005143 239 EEQHLRIENARLKDELDRVCALAGK 263 (712)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~~~~ 263 (712)
..+||...+..-.+|++|+.+++..
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999887653
No 163
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=20.54 E-value=36 Score=30.67 Aligned_cols=25 Identities=8% Similarity=0.322 Sum_probs=23.0
Q ss_pred EeeccccChhHHHHhhhccccchhh
Q 005143 650 TSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 650 tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
.+.-++.||++||+.|-|.....+|
T Consensus 6 ~~~~i~Ap~e~Vw~altdpe~~~~W 30 (144)
T 2l8o_A 6 VEVTVYAAIEKVWKYWNEPAHIMKW 30 (144)
T ss_dssp EEEEECSCHHHHHHHHHCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHCCHHHHhhc
Confidence 5667899999999999999999999
No 164
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.43 E-value=71 Score=28.17 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccccceeeeecccchhHHHHHHH
Q 005143 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (712)
Q Consensus 140 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (712)
.+++.|...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887765432 236789999999999999988766666665443
No 165
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=20.24 E-value=36 Score=30.69 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=23.6
Q ss_pred EEeeccccChhHHHHhhhccccchhh
Q 005143 649 ATSVWLPVSPQRLFNFLRDERLRSEW 674 (712)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrd~~~R~eW 674 (712)
..+..++.||++||+.|-|.....+|
T Consensus 4 ~~~~~i~Ap~e~Vw~altdp~~~~~W 29 (144)
T 2lgh_A 4 SIEAHIEQEIEAVWWAWNDPDCIARW 29 (144)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTS
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcc
Confidence 45677899999999999999999999
Done!