Query 005144
Match_columns 712
No_of_seqs 489 out of 4073
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.1E-37 4.6E-42 357.9 44.0 443 57-516 189-767 (2102)
2 KOG0166 Karyopherin (importin) 100.0 6.2E-37 1.4E-41 309.2 29.1 318 57-398 109-436 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 7.2E-37 1.6E-41 284.0 21.8 320 55-397 112-442 (526)
4 PLN03200 cellulose synthase-in 100.0 2.5E-34 5.5E-39 332.6 43.1 441 52-516 8-520 (2102)
5 KOG0166 Karyopherin (importin) 100.0 9.7E-35 2.1E-39 293.3 33.4 401 55-513 64-486 (514)
6 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-33 3.6E-38 261.7 21.3 405 53-515 67-498 (526)
7 KOG4224 Armadillo repeat prote 100.0 6.9E-33 1.5E-37 259.9 18.6 358 103-517 84-450 (550)
8 KOG4224 Armadillo repeat prote 100.0 2E-31 4.3E-36 250.1 21.7 383 76-515 98-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.7E-22 3.7E-27 217.1 36.5 374 79-515 265-651 (708)
10 PHA02713 hypothetical protein; 99.9 6.4E-25 1.4E-29 238.0 17.2 158 536-695 17-176 (557)
11 KOG4441 Proteins containing BT 99.9 4.7E-24 1E-28 229.8 16.3 158 536-693 28-185 (571)
12 PHA02790 Kelch-like protein; P 99.9 2.2E-24 4.8E-29 230.7 12.6 148 538-687 16-167 (480)
13 PHA03098 kelch-like protein; P 99.9 6.1E-24 1.3E-28 233.4 16.3 151 540-694 5-157 (534)
14 KOG4199 Uncharacterized conser 99.9 1.5E-20 3.2E-25 175.7 32.9 398 14-478 22-450 (461)
15 KOG4350 Uncharacterized conser 99.9 3.7E-23 8E-28 196.6 10.6 161 536-696 36-199 (620)
16 PF05804 KAP: Kinesin-associat 99.9 4.1E-20 9E-25 198.9 33.4 355 58-475 287-652 (708)
17 KOG1048 Neural adherens juncti 99.8 1.1E-18 2.4E-23 182.8 23.9 354 106-515 235-686 (717)
18 KOG2122 Beta-catenin-binding p 99.8 1.2E-18 2.6E-23 189.4 24.2 362 80-516 211-604 (2195)
19 KOG2122 Beta-catenin-binding p 99.8 1.2E-18 2.6E-23 189.3 20.0 336 62-401 236-604 (2195)
20 KOG4591 Uncharacterized conser 99.8 7.8E-19 1.7E-23 150.9 11.6 157 535-695 57-218 (280)
21 KOG4500 Rho/Rac GTPase guanine 99.8 3.7E-17 8E-22 158.0 23.7 423 77-514 56-520 (604)
22 KOG2075 Topoisomerase TOP1-int 99.8 1.3E-17 2.7E-22 163.8 15.7 161 537-698 107-273 (521)
23 KOG1048 Neural adherens juncti 99.7 1.6E-16 3.4E-21 166.9 21.6 371 57-487 233-699 (717)
24 KOG4682 Uncharacterized conser 99.7 5.1E-17 1.1E-21 155.4 11.6 163 531-694 56-222 (488)
25 PF00651 BTB: BTB/POZ domain; 99.7 3.2E-17 6.9E-22 139.4 8.2 106 536-641 2-110 (111)
26 KOG0783 Uncharacterized conser 99.7 6.9E-17 1.5E-21 167.2 11.1 162 542-703 708-876 (1267)
27 KOG4199 Uncharacterized conser 99.7 5.7E-14 1.2E-18 132.0 28.3 309 75-406 119-452 (461)
28 PF10508 Proteasom_PSMB: Prote 99.7 1.2E-13 2.7E-18 148.1 34.8 392 76-515 51-464 (503)
29 KOG4500 Rho/Rac GTPase guanine 99.6 1.7E-13 3.7E-18 133.0 25.9 339 131-511 57-429 (604)
30 PF10508 Proteasom_PSMB: Prote 99.6 1.6E-13 3.4E-18 147.3 28.7 360 108-519 42-426 (503)
31 smart00225 BTB Broad-Complex, 99.6 5.9E-15 1.3E-19 120.2 8.8 90 546-635 1-90 (90)
32 KOG1222 Kinesin associated pro 99.6 1.9E-12 4.1E-17 127.4 25.4 394 55-515 258-665 (791)
33 PRK09687 putative lyase; Provi 99.6 5.6E-13 1.2E-17 131.0 21.2 254 105-469 24-279 (280)
34 PRK09687 putative lyase; Provi 99.5 6.7E-13 1.5E-17 130.4 20.6 253 59-395 25-279 (280)
35 PRK13800 putative oxidoreducta 99.5 2.6E-12 5.6E-17 148.2 27.3 276 103-509 620-895 (897)
36 KOG1222 Kinesin associated pro 99.5 3.1E-12 6.7E-17 125.9 21.8 319 56-402 299-667 (791)
37 PRK13800 putative oxidoreducta 99.5 7.7E-12 1.7E-16 144.3 27.4 264 75-469 633-896 (897)
38 KOG1293 Proteins containing ar 99.5 1E-11 2.2E-16 127.6 24.6 389 76-515 22-535 (678)
39 PF04826 Arm_2: Armadillo-like 99.5 1.3E-11 2.8E-16 118.3 21.9 191 59-278 14-205 (254)
40 PF04826 Arm_2: Armadillo-like 99.5 4.4E-12 9.5E-17 121.5 18.7 194 154-362 9-205 (254)
41 cd00256 VATPase_H VATPase_H, r 99.4 3.7E-10 8E-15 115.3 25.6 341 157-515 53-427 (429)
42 KOG2171 Karyopherin (importin) 99.3 9.5E-10 2.1E-14 120.7 29.3 377 76-511 93-544 (1075)
43 cd00020 ARM Armadillo/beta-cat 99.3 4.7E-11 1E-15 103.1 14.3 117 203-319 3-119 (120)
44 PF01602 Adaptin_N: Adaptin N 99.3 6.8E-10 1.5E-14 122.7 26.4 382 76-515 55-446 (526)
45 cd00020 ARM Armadillo/beta-cat 99.3 5.6E-11 1.2E-15 102.5 13.8 118 244-361 2-119 (120)
46 PF01602 Adaptin_N: Adaptin N 99.3 5.7E-10 1.2E-14 123.3 23.8 397 63-515 81-485 (526)
47 KOG2171 Karyopherin (importin) 99.3 2.3E-09 5E-14 117.8 27.5 401 76-516 17-464 (1075)
48 KOG2023 Nuclear transport rece 99.3 3.2E-10 6.9E-15 116.3 19.1 345 104-510 128-546 (885)
49 KOG2160 Armadillo/beta-catenin 99.3 5.6E-10 1.2E-14 108.2 19.3 194 66-278 86-282 (342)
50 KOG1293 Proteins containing ar 99.2 2.3E-09 4.9E-14 110.7 22.0 365 55-474 49-535 (678)
51 cd00256 VATPase_H VATPase_H, r 99.2 2E-08 4.4E-13 102.8 28.4 313 105-471 54-424 (429)
52 KOG2023 Nuclear transport rece 99.2 3.5E-10 7.6E-15 116.0 14.7 313 157-516 128-508 (885)
53 KOG0168 Putative ubiquitin fus 99.2 4.8E-09 1E-13 110.7 23.4 245 76-343 181-436 (1051)
54 KOG1241 Karyopherin (importin) 99.1 1.1E-07 2.3E-12 99.9 30.4 400 60-516 34-480 (859)
55 PTZ00429 beta-adaptin; Provisi 99.1 1.5E-07 3.4E-12 104.0 31.5 350 76-514 81-434 (746)
56 KOG3678 SARM protein (with ste 99.1 8.6E-09 1.9E-13 101.7 17.5 268 244-516 175-455 (832)
57 KOG1241 Karyopherin (importin) 99.0 1E-07 2.2E-12 100.1 23.4 432 58-514 169-669 (859)
58 PTZ00429 beta-adaptin; Provisi 99.0 3E-07 6.5E-12 101.7 28.0 347 76-515 45-399 (746)
59 KOG2160 Armadillo/beta-catenin 99.0 1E-07 2.2E-12 92.7 20.9 182 180-362 98-282 (342)
60 KOG0168 Putative ubiquitin fus 98.9 2.9E-07 6.4E-12 97.6 24.6 219 55-302 209-437 (1051)
61 KOG2759 Vacuolar H+-ATPase V1 98.9 2.8E-07 6.1E-12 90.8 22.0 338 159-515 67-440 (442)
62 KOG1062 Vesicle coat complex A 98.9 1.9E-06 4.2E-11 91.4 29.5 399 62-517 108-548 (866)
63 KOG0946 ER-Golgi vesicle-tethe 98.9 9.9E-07 2.1E-11 93.1 27.1 284 105-408 23-357 (970)
64 KOG0511 Ankyrin repeat protein 98.9 8.2E-09 1.8E-13 98.8 10.7 137 554-691 301-447 (516)
65 KOG0946 ER-Golgi vesicle-tethe 98.9 5.7E-07 1.2E-11 94.8 24.8 329 54-408 19-410 (970)
66 KOG3678 SARM protein (with ste 98.9 2E-07 4.4E-12 92.2 19.1 271 97-398 173-452 (832)
67 KOG2759 Vacuolar H+-ATPase V1 98.8 2.4E-06 5.1E-11 84.4 25.0 315 58-398 66-438 (442)
68 KOG0211 Protein phosphatase 2A 98.8 1E-06 2.2E-11 96.4 23.9 394 54-514 233-665 (759)
69 KOG1517 Guanine nucleotide bin 98.8 6.7E-08 1.5E-12 104.4 13.8 247 56-327 471-739 (1387)
70 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.5E-07 3.2E-12 95.5 14.9 220 251-504 57-305 (312)
71 COG5215 KAP95 Karyopherin (imp 98.7 6.6E-06 1.4E-10 83.9 25.0 415 72-515 187-670 (858)
72 PF03224 V-ATPase_H_N: V-ATPas 98.7 2.9E-07 6.2E-12 93.4 15.5 228 105-353 56-305 (312)
73 KOG0212 Uncharacterized conser 98.7 1E-06 2.2E-11 89.6 17.1 348 103-513 83-444 (675)
74 KOG1059 Vesicle coat complex A 98.7 5.7E-06 1.2E-10 86.7 22.9 304 55-408 179-500 (877)
75 KOG0213 Splicing factor 3b, su 98.7 3.9E-06 8.5E-11 87.9 21.2 259 106-400 801-1067(1172)
76 KOG1824 TATA-binding protein-i 98.6 5.6E-06 1.2E-10 89.2 21.3 403 73-518 580-1041(1233)
77 KOG0213 Splicing factor 3b, su 98.6 1.1E-05 2.3E-10 84.8 21.3 360 131-515 568-956 (1172)
78 COG5215 KAP95 Karyopherin (imp 98.5 5.5E-05 1.2E-09 77.4 25.5 416 75-513 233-711 (858)
79 COG5181 HSH155 U2 snRNP splice 98.5 3.1E-06 6.7E-11 86.9 16.7 261 105-401 605-873 (975)
80 TIGR02270 conserved hypothetic 98.5 2E-05 4.3E-10 81.6 22.8 243 207-514 54-297 (410)
81 KOG1824 TATA-binding protein-i 98.5 5E-05 1.1E-09 82.2 25.0 358 127-510 581-992 (1233)
82 KOG4413 26S proteasome regulat 98.5 0.00024 5.3E-09 67.9 26.6 306 180-518 97-444 (524)
83 KOG1242 Protein containing ada 98.5 4E-05 8.6E-10 80.0 23.0 343 105-516 97-447 (569)
84 KOG1517 Guanine nucleotide bin 98.5 5.2E-06 1.1E-10 90.4 16.5 222 133-362 487-732 (1387)
85 COG5369 Uncharacterized conser 98.4 7.4E-07 1.6E-11 90.0 9.2 295 79-396 405-739 (743)
86 KOG4413 26S proteasome regulat 98.4 0.00012 2.6E-09 69.9 22.1 333 131-488 97-456 (524)
87 KOG2973 Uncharacterized conser 98.4 3.5E-05 7.6E-10 73.1 18.5 290 210-516 6-318 (353)
88 KOG0212 Uncharacterized conser 98.4 2.7E-05 5.9E-10 79.6 19.0 311 204-517 81-410 (675)
89 KOG1062 Vesicle coat complex A 98.4 0.0012 2.7E-08 70.8 31.6 245 76-362 155-414 (866)
90 KOG1060 Vesicle coat complex A 98.4 5.4E-05 1.2E-09 80.4 21.1 303 159-515 37-352 (968)
91 KOG0211 Protein phosphatase 2A 98.3 0.00019 4.2E-09 79.0 24.8 368 125-514 246-626 (759)
92 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00022 4.8E-09 73.1 23.4 311 145-470 13-362 (371)
93 PF14664 RICTOR_N: Rapamycin-i 98.3 0.0005 1.1E-08 70.5 25.8 246 93-362 14-269 (371)
94 TIGR02270 conserved hypothetic 98.3 0.00016 3.4E-09 75.0 22.3 210 106-399 88-297 (410)
95 KOG1059 Vesicle coat complex A 98.3 0.00011 2.5E-09 77.3 21.0 239 139-408 129-374 (877)
96 PF05536 Neurochondrin: Neuroc 98.3 0.0016 3.5E-08 70.6 29.9 241 106-362 7-261 (543)
97 KOG2973 Uncharacterized conser 98.2 0.00044 9.5E-09 65.9 21.2 267 59-359 5-312 (353)
98 KOG1240 Protein kinase contain 98.2 2E-05 4.4E-10 87.3 14.3 279 78-399 438-726 (1431)
99 KOG4646 Uncharacterized conser 98.2 1.3E-05 2.8E-10 66.1 9.6 133 208-342 17-150 (173)
100 KOG1061 Vesicle coat complex A 98.2 0.00019 4.1E-09 76.8 20.9 383 79-517 29-419 (734)
101 KOG1061 Vesicle coat complex A 98.2 0.00015 3.3E-09 77.6 18.8 253 54-353 46-299 (734)
102 KOG1060 Vesicle coat complex A 98.1 0.00095 2.1E-08 71.3 24.1 351 108-515 39-460 (968)
103 KOG1242 Protein containing ada 98.1 0.0013 2.7E-08 69.1 24.9 370 76-513 109-483 (569)
104 KOG1077 Vesicle coat complex A 98.1 0.005 1.1E-07 65.2 28.6 150 251-411 331-501 (938)
105 COG5240 SEC21 Vesicle coat com 98.1 0.0035 7.6E-08 64.7 26.9 336 127-514 201-556 (898)
106 COG1413 FOG: HEAT repeat [Ener 98.1 0.0011 2.5E-08 68.3 24.7 214 104-394 43-269 (335)
107 KOG2838 Uncharacterized conser 98.1 2.5E-06 5.4E-11 78.4 4.1 97 554-650 261-396 (401)
108 KOG4646 Uncharacterized conser 98.1 2.4E-05 5.3E-10 64.5 9.2 127 54-205 13-139 (173)
109 PF05536 Neurochondrin: Neuroc 98.1 0.0056 1.2E-07 66.5 29.2 201 58-280 6-215 (543)
110 KOG0783 Uncharacterized conser 98.1 4.5E-06 9.8E-11 88.4 5.4 66 542-607 556-633 (1267)
111 COG1413 FOG: HEAT repeat [Ener 98.0 0.00051 1.1E-08 70.9 19.5 156 207-400 43-211 (335)
112 KOG2259 Uncharacterized conser 98.0 0.00015 3.2E-09 75.8 14.7 122 208-336 199-326 (823)
113 KOG1789 Endocytosis protein RM 98.0 0.0042 9E-08 68.5 25.7 316 78-415 1740-2135(2235)
114 COG5181 HSH155 U2 snRNP splice 97.9 4.4E-05 9.5E-10 78.7 9.7 266 208-515 605-872 (975)
115 KOG1240 Protein kinase contain 97.9 0.00044 9.6E-09 77.2 17.2 281 131-474 438-727 (1431)
116 PF10165 Ric8: Guanine nucleot 97.9 0.00041 8.8E-09 73.6 16.7 270 187-474 3-339 (446)
117 PF00514 Arm: Armadillo/beta-c 97.9 1.7E-05 3.6E-10 52.8 3.8 40 93-144 1-40 (41)
118 KOG2259 Uncharacterized conser 97.9 0.00015 3.2E-09 75.8 12.4 249 131-397 213-474 (823)
119 PF10165 Ric8: Guanine nucleot 97.9 0.0015 3.3E-08 69.2 20.6 188 83-276 1-216 (446)
120 PF00514 Arm: Armadillo/beta-c 97.8 3.9E-05 8.5E-10 50.9 4.8 41 280-320 1-41 (41)
121 KOG0915 Uncharacterized conser 97.8 0.0018 4E-08 74.2 20.3 320 179-515 971-1308(1702)
122 KOG1943 Beta-tubulin folding c 97.8 0.013 2.9E-07 65.3 26.3 250 249-512 341-610 (1133)
123 COG5240 SEC21 Vesicle coat com 97.8 0.0085 1.8E-07 62.0 22.9 324 80-493 244-578 (898)
124 KOG2734 Uncharacterized conser 97.8 0.0053 1.2E-07 61.5 20.7 225 188-414 107-365 (536)
125 KOG1943 Beta-tubulin folding c 97.8 0.0092 2E-07 66.5 24.3 256 104-397 341-610 (1133)
126 KOG1789 Endocytosis protein RM 97.8 0.0038 8.2E-08 68.8 21.0 284 75-380 1784-2141(2235)
127 COG5369 Uncharacterized conser 97.7 0.00025 5.3E-09 72.3 10.9 189 135-331 408-605 (743)
128 KOG2734 Uncharacterized conser 97.7 0.019 4.1E-07 57.7 23.6 247 80-342 101-370 (536)
129 PF12348 CLASP_N: CLASP N term 97.7 0.00081 1.7E-08 65.1 14.5 179 178-362 20-206 (228)
130 KOG2838 Uncharacterized conser 97.7 7.9E-05 1.7E-09 68.8 6.1 90 539-628 125-219 (401)
131 PF13646 HEAT_2: HEAT repeats; 97.7 0.00015 3.1E-09 58.2 6.9 86 209-316 1-88 (88)
132 KOG0567 HEAT repeat-containing 97.6 0.0045 9.8E-08 57.9 16.9 200 100-360 63-278 (289)
133 PF12348 CLASP_N: CLASP N term 97.6 0.00036 7.8E-09 67.6 10.6 179 301-516 17-209 (228)
134 KOG2716 Polymerase delta-inter 97.6 0.00029 6.3E-09 65.5 9.1 94 547-641 7-104 (230)
135 PF13646 HEAT_2: HEAT repeats; 97.6 0.00021 4.6E-09 57.2 7.4 86 251-358 1-88 (88)
136 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0024 5.1E-08 61.2 15.1 228 76-320 162-428 (432)
137 KOG1077 Vesicle coat complex A 97.6 0.018 3.9E-07 61.2 22.5 256 131-407 126-406 (938)
138 KOG0915 Uncharacterized conser 97.6 0.0071 1.5E-07 69.7 20.5 348 131-516 972-1347(1702)
139 PF07707 BACK: BTB And C-termi 97.5 0.00023 5E-09 59.0 6.0 50 647-696 1-50 (103)
140 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.0067 1.4E-07 58.2 15.9 255 256-515 156-430 (432)
141 KOG1058 Vesicle coat complex C 97.5 0.055 1.2E-06 58.2 23.8 371 210-678 102-483 (948)
142 KOG4535 HEAT and armadillo rep 97.4 0.01 2.2E-07 60.2 17.1 261 217-510 305-600 (728)
143 PF12460 MMS19_C: RNAPII trans 97.3 0.037 8E-07 58.7 21.7 359 106-515 1-396 (415)
144 KOG4151 Myosin assembly protei 97.3 0.0048 1E-07 66.8 14.7 241 93-358 493-737 (748)
145 PF09759 Atx10homo_assoc: Spin 97.3 0.00097 2.1E-08 53.6 7.3 67 182-248 3-71 (102)
146 COG5096 Vesicle coat complex, 97.3 0.056 1.2E-06 59.7 22.3 257 216-496 28-296 (757)
147 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00061 1.3E-08 48.7 4.9 55 221-276 1-55 (55)
148 KOG0567 HEAT repeat-containing 97.2 0.034 7.3E-07 52.3 17.2 224 209-512 38-279 (289)
149 PF12460 MMS19_C: RNAPII trans 97.2 0.32 7E-06 51.6 27.0 334 78-474 17-396 (415)
150 KOG1078 Vesicle coat complex C 97.1 0.041 8.9E-07 59.5 18.9 280 208-513 246-532 (865)
151 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00087 1.9E-08 47.9 4.7 55 263-318 1-55 (55)
152 KOG4535 HEAT and armadillo rep 97.1 0.0074 1.6E-07 61.1 12.5 223 221-475 363-606 (728)
153 COG5096 Vesicle coat complex, 97.1 0.48 1E-05 52.6 27.2 161 76-277 32-194 (757)
154 PF09759 Atx10homo_assoc: Spin 97.1 0.0034 7.4E-08 50.5 8.0 67 223-289 2-70 (102)
155 PF08569 Mo25: Mo25-like; Int 97.1 0.096 2.1E-06 52.9 20.1 204 203-407 72-292 (335)
156 KOG1987 Speckle-type POZ prote 97.0 0.00045 9.8E-09 69.9 3.5 131 553-683 109-244 (297)
157 PF02214 BTB_2: BTB/POZ domain 97.0 0.0006 1.3E-08 55.2 3.5 87 547-634 1-94 (94)
158 smart00512 Skp1 Found in Skp1 97.0 0.0031 6.7E-08 52.0 7.7 80 547-627 4-104 (104)
159 smart00185 ARM Armadillo/beta- 97.0 0.0015 3.2E-08 43.3 4.7 39 94-144 2-40 (41)
160 KOG3473 RNA polymerase II tran 97.0 0.0028 6.1E-08 48.7 6.4 74 552-626 25-111 (112)
161 KOG1991 Nuclear transport rece 96.9 0.3 6.5E-06 54.6 23.8 279 58-362 407-711 (1010)
162 smart00875 BACK BTB And C-term 96.9 0.0013 2.9E-08 54.1 4.8 49 647-695 1-49 (101)
163 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.8E-08 42.4 4.8 38 198-235 3-40 (41)
164 KOG1832 HIV-1 Vpr-binding prot 96.8 0.13 2.9E-06 56.3 19.6 336 131-484 368-785 (1516)
165 KOG1724 SCF ubiquitin ligase, 96.8 0.0084 1.8E-07 52.9 8.9 100 552-653 13-141 (162)
166 KOG1058 Vesicle coat complex C 96.8 0.17 3.6E-06 54.7 19.5 236 76-362 219-463 (948)
167 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.37 8E-06 54.4 23.3 196 100-305 113-333 (802)
168 PF08569 Mo25: Mo25-like; Int 96.7 0.28 6E-06 49.7 20.5 203 99-321 71-284 (335)
169 PF12717 Cnd1: non-SMC mitotic 96.7 0.1 2.3E-06 47.9 16.1 92 262-362 1-92 (178)
170 KOG4151 Myosin assembly protei 96.7 0.084 1.8E-06 57.6 17.4 204 145-362 492-699 (748)
171 KOG2062 26S proteasome regulat 96.7 0.15 3.4E-06 54.8 18.5 153 207-382 519-678 (929)
172 KOG1078 Vesicle coat complex C 96.7 0.3 6.5E-06 53.2 20.7 267 131-471 260-531 (865)
173 KOG3036 Protein involved in ce 96.6 0.65 1.4E-05 43.4 20.1 150 133-287 96-255 (293)
174 KOG2032 Uncharacterized conser 96.5 0.098 2.1E-06 53.7 15.4 250 258-514 267-532 (533)
175 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.0047 1E-07 51.1 4.8 75 441-515 41-117 (119)
176 PF11841 DUF3361: Domain of un 96.5 0.095 2.1E-06 46.0 13.1 131 149-282 3-135 (160)
177 PF11841 DUF3361: Domain of un 96.4 0.044 9.5E-07 48.0 10.8 133 97-241 4-136 (160)
178 PF12717 Cnd1: non-SMC mitotic 96.4 0.078 1.7E-06 48.8 13.3 91 304-399 1-93 (178)
179 KOG3036 Protein involved in ce 96.4 0.39 8.5E-06 44.8 17.1 151 80-246 96-256 (293)
180 PRK14707 hypothetical protein; 96.4 1.1 2.4E-05 54.5 24.4 277 63-361 165-444 (2710)
181 KOG1248 Uncharacterized conser 96.3 0.82 1.8E-05 52.4 22.4 221 261-516 666-901 (1176)
182 PRK14707 hypothetical protein; 96.3 2.6 5.6E-05 51.6 26.6 304 76-401 303-617 (2710)
183 KOG4464 Signaling protein RIC- 96.3 0.29 6.3E-06 49.1 16.5 242 219-476 109-406 (532)
184 KOG2062 26S proteasome regulat 96.3 0.34 7.4E-06 52.3 18.0 157 292-500 520-681 (929)
185 PF04078 Rcd1: Cell differenti 96.2 0.65 1.4E-05 44.3 17.7 223 130-360 9-260 (262)
186 KOG0511 Ankyrin repeat protein 96.2 0.02 4.3E-07 56.1 7.8 98 536-635 139-239 (516)
187 PF12755 Vac14_Fab1_bd: Vacuol 96.1 0.035 7.6E-07 44.7 8.1 83 308-391 3-90 (97)
188 KOG1020 Sister chromatid cohes 96.1 4.5 9.7E-05 48.0 28.1 142 59-236 814-960 (1692)
189 PF04078 Rcd1: Cell differenti 96.1 0.23 5.1E-06 47.3 14.2 205 76-288 8-227 (262)
190 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.042 9.1E-07 44.3 8.0 90 224-318 3-94 (97)
191 PF05918 API5: Apoptosis inhib 96.0 0.17 3.8E-06 54.1 14.6 169 211-398 27-207 (556)
192 PF12719 Cnd3: Nuclear condens 96.0 0.31 6.7E-06 49.1 16.1 147 250-401 27-188 (298)
193 PF11822 DUF3342: Domain of un 96.0 0.0073 1.6E-07 58.9 4.1 89 554-642 14-104 (317)
194 KOG1991 Nuclear transport rece 96.0 1.8 4E-05 48.7 22.4 145 156-303 409-559 (1010)
195 PF08045 CDC14: Cell division 96.0 0.12 2.5E-06 49.6 11.9 100 180-279 106-208 (257)
196 KOG1832 HIV-1 Vpr-binding prot 95.9 0.32 7E-06 53.5 16.1 313 76-412 366-787 (1516)
197 PF07814 WAPL: Wings apart-lik 95.9 0.32 7E-06 50.3 16.1 256 53-334 17-313 (361)
198 KOG0414 Chromosome condensatio 95.9 0.075 1.6E-06 60.2 11.8 139 250-398 920-1064(1251)
199 PF13764 E3_UbLigase_R4: E3 ub 95.9 1.8 3.9E-05 49.0 22.6 186 153-348 113-334 (802)
200 PF03931 Skp1_POZ: Skp1 family 95.9 0.025 5.4E-07 41.4 5.5 56 547-605 3-59 (62)
201 KOG4464 Signaling protein RIC- 95.9 0.4 8.6E-06 48.1 15.3 314 55-398 43-402 (532)
202 PF05004 IFRD: Interferon-rela 95.7 0.72 1.6E-05 46.5 17.2 179 180-362 58-257 (309)
203 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.034 7.4E-07 46.1 5.8 72 158-236 44-115 (119)
204 PF12719 Cnd3: Nuclear condens 95.5 0.9 2E-05 45.8 17.2 164 110-303 33-209 (298)
205 KOG1967 DNA repair/transcripti 95.4 0.21 4.6E-06 55.3 12.6 151 206-359 866-1021(1030)
206 KOG2274 Predicted importin 9 [ 95.3 1 2.3E-05 50.0 17.5 244 58-320 527-780 (1005)
207 PF08045 CDC14: Cell division 95.3 0.24 5.1E-06 47.6 11.4 99 131-236 106-207 (257)
208 KOG1248 Uncharacterized conser 95.3 0.7 1.5E-05 52.9 16.5 223 76-320 667-898 (1176)
209 PF05004 IFRD: Interferon-rela 95.1 0.88 1.9E-05 45.9 15.6 180 76-277 56-256 (309)
210 PF02985 HEAT: HEAT repeat; I 95.1 0.042 9E-07 33.6 3.8 28 335-362 2-29 (31)
211 KOG4653 Uncharacterized conser 95.1 0.57 1.2E-05 51.7 14.5 173 131-321 742-919 (982)
212 KOG1967 DNA repair/transcripti 95.1 0.11 2.4E-06 57.3 9.4 152 157-317 867-1021(1030)
213 KOG2999 Regulator of Rac1, req 95.0 0.36 7.8E-06 50.3 12.2 166 55-240 81-246 (713)
214 KOG2274 Predicted importin 9 [ 94.9 2.2 4.8E-05 47.6 18.6 312 60-398 448-780 (1005)
215 KOG0414 Chromosome condensatio 94.7 0.57 1.2E-05 53.6 13.9 163 105-303 920-1083(1251)
216 PF05918 API5: Apoptosis inhib 94.7 0.42 9.2E-06 51.3 12.5 130 252-394 26-158 (556)
217 KOG4653 Uncharacterized conser 94.7 1.1 2.3E-05 49.6 15.3 179 76-281 740-921 (982)
218 KOG1020 Sister chromatid cohes 94.6 13 0.00029 44.4 27.1 109 104-241 816-926 (1692)
219 PF02985 HEAT: HEAT repeat; I 94.6 0.038 8.3E-07 33.7 2.7 29 486-514 2-30 (31)
220 KOG2025 Chromosome condensatio 94.5 2.3 5E-05 46.2 17.0 104 249-358 85-189 (892)
221 PF07814 WAPL: Wings apart-lik 94.5 1.4 3E-05 45.7 15.6 268 106-400 23-357 (361)
222 KOG1665 AFH1-interacting prote 94.5 0.082 1.8E-06 48.0 5.7 91 546-637 10-106 (302)
223 PF11701 UNC45-central: Myosin 94.4 0.22 4.8E-06 44.5 8.4 146 208-359 4-156 (157)
224 KOG2032 Uncharacterized conser 94.3 5.5 0.00012 41.5 18.7 138 131-277 273-414 (533)
225 KOG1566 Conserved protein Mo25 94.3 2.8 6.2E-05 40.9 15.6 199 202-402 74-290 (342)
226 KOG1243 Protein kinase [Genera 94.2 0.41 8.8E-06 51.8 11.0 186 288-513 327-515 (690)
227 KOG2956 CLIP-associating prote 94.1 1.3 2.8E-05 45.6 13.6 171 76-277 300-476 (516)
228 COG5098 Chromosome condensatio 94.0 1.2 2.6E-05 48.0 13.6 130 261-400 908-1039(1128)
229 KOG1778 CREB binding protein/P 94.0 0.06 1.3E-06 53.3 4.0 140 546-686 28-170 (319)
230 PF06025 DUF913: Domain of Unk 93.9 2.4 5.2E-05 44.0 15.8 126 156-287 105-241 (379)
231 KOG1243 Protein kinase [Genera 93.7 0.46 1E-05 51.3 10.3 184 204-396 327-513 (690)
232 PF14668 RICTOR_V: Rapamycin-i 93.6 0.45 9.8E-06 35.8 7.2 67 80-157 4-70 (73)
233 KOG2025 Chromosome condensatio 93.4 15 0.00032 40.3 20.7 104 103-231 84-188 (892)
234 KOG1820 Microtubule-associated 93.3 1 2.2E-05 51.0 12.7 195 54-278 246-443 (815)
235 COG5116 RPN2 26S proteasome re 93.3 0.47 1E-05 49.7 9.2 53 444-499 622-677 (926)
236 KOG2714 SETA binding protein S 93.3 0.27 5.8E-06 49.7 7.3 85 547-632 13-102 (465)
237 smart00638 LPD_N Lipoprotein N 93.3 6.9 0.00015 43.8 19.5 164 158-355 394-571 (574)
238 PF06025 DUF913: Domain of Unk 93.2 6.2 0.00013 41.1 17.5 168 135-303 3-208 (379)
239 PF01347 Vitellogenin_N: Lipop 93.1 2.9 6.4E-05 47.2 16.5 122 207-357 486-617 (618)
240 KOG2137 Protein kinase [Signal 93.0 1.7 3.7E-05 47.4 13.1 139 329-503 385-527 (700)
241 PF04063 DUF383: Domain of unk 92.9 1.3 2.8E-05 40.9 10.7 113 131-247 10-142 (192)
242 PF11701 UNC45-central: Myosin 92.9 0.7 1.5E-05 41.3 8.8 132 131-275 20-156 (157)
243 COG5656 SXM1 Importin, protein 92.7 19 0.00041 39.8 23.4 262 75-362 428-711 (970)
244 COG5218 YCG1 Chromosome conden 92.6 13 0.00029 39.6 18.4 103 206-319 90-195 (885)
245 PF14668 RICTOR_V: Rapamycin-i 92.6 0.39 8.4E-06 36.1 5.6 61 350-410 4-70 (73)
246 KOG3665 ZYG-1-like serine/thre 92.6 8 0.00017 43.8 18.4 165 314-495 494-678 (699)
247 KOG2956 CLIP-associating prote 92.1 7.7 0.00017 40.2 15.7 146 208-362 330-477 (516)
248 KOG2999 Regulator of Rac1, req 92.1 4.2 9E-05 42.9 13.9 160 106-282 85-246 (713)
249 PF06371 Drf_GBD: Diaphanous G 91.2 0.75 1.6E-05 42.7 7.4 91 145-235 95-186 (187)
250 COG5116 RPN2 26S proteasome re 90.9 2.1 4.6E-05 45.1 10.5 123 103-262 550-675 (926)
251 PF01466 Skp1: Skp1 family, di 90.5 0.9 1.9E-05 35.0 5.9 53 609-661 10-65 (78)
252 PF10363 DUF2435: Protein of u 90.5 0.87 1.9E-05 36.3 5.9 71 210-282 6-76 (92)
253 COG5201 SKP1 SCF ubiquitin lig 90.3 2.2 4.7E-05 35.3 7.9 90 551-643 9-123 (158)
254 KOG1820 Microtubule-associated 89.9 7.5 0.00016 44.3 14.6 182 292-513 254-443 (815)
255 PF12530 DUF3730: Protein of u 89.7 20 0.00043 34.5 17.4 134 75-236 13-151 (234)
256 KOG3665 ZYG-1-like serine/thre 89.7 2.7 5.8E-05 47.5 11.1 155 139-301 494-677 (699)
257 KOG2715 Uncharacterized conser 88.8 2 4.4E-05 37.3 7.1 99 542-641 18-121 (210)
258 PF11707 Npa1: Ribosome 60S bi 88.8 30 0.00066 35.4 18.4 157 251-407 58-246 (330)
259 PF11865 DUF3385: Domain of un 88.1 3.6 7.8E-05 36.9 8.8 147 59-235 8-156 (160)
260 KOG1788 Uncharacterized conser 88.0 26 0.00056 40.2 16.5 227 186-418 663-958 (2799)
261 KOG1566 Conserved protein Mo25 87.5 31 0.00067 34.1 22.8 204 98-321 73-287 (342)
262 PF06371 Drf_GBD: Diaphanous G 87.5 4.4 9.6E-05 37.4 9.6 82 279-361 95-186 (187)
263 PF04063 DUF383: Domain of unk 87.2 2.5 5.3E-05 39.1 7.3 100 55-166 50-156 (192)
264 KOG2137 Protein kinase [Signal 87.1 24 0.00053 38.9 15.6 135 204-346 386-521 (700)
265 KOG2933 Uncharacterized conser 87.0 3.1 6.6E-05 40.7 8.0 141 209-362 90-234 (334)
266 COG5209 RCD1 Uncharacterized p 86.8 8.3 0.00018 35.7 10.1 146 134-284 118-273 (315)
267 KOG1949 Uncharacterized conser 86.4 9.2 0.0002 41.7 11.7 178 294-509 177-366 (1005)
268 KOG1949 Uncharacterized conser 86.4 10 0.00022 41.4 12.0 183 210-396 177-368 (1005)
269 PF11864 DUF3384: Domain of un 85.6 57 0.0012 35.2 27.0 259 75-361 41-329 (464)
270 PF08167 RIX1: rRNA processing 85.6 6.2 0.00013 35.6 9.0 115 333-475 25-146 (165)
271 PF08506 Cse1: Cse1; InterPro 85.3 27 0.00059 36.2 14.6 159 140-315 194-370 (370)
272 PF08506 Cse1: Cse1; InterPro 85.2 51 0.0011 34.3 20.7 288 80-393 57-370 (370)
273 KOG2611 Neurochondrin/leucine- 84.5 26 0.00057 36.6 13.4 127 131-260 26-163 (698)
274 PF12530 DUF3730: Protein of u 84.5 40 0.00087 32.5 19.1 171 210-396 3-187 (234)
275 PF12031 DUF3518: Domain of un 84.4 1 2.2E-05 42.2 3.4 93 383-501 138-233 (257)
276 COG5209 RCD1 Uncharacterized p 84.4 12 0.00026 34.7 10.0 103 79-196 116-220 (315)
277 PF13251 DUF4042: Domain of un 84.1 18 0.00038 33.1 11.1 110 334-474 40-176 (182)
278 PF14500 MMS19_N: Dos2-interac 84.1 36 0.00079 33.4 14.2 216 253-475 3-240 (262)
279 KOG1525 Sister chromatid cohes 83.7 1.1E+02 0.0025 37.1 21.2 170 332-501 258-441 (1266)
280 PF14500 MMS19_N: Dos2-interac 83.5 47 0.001 32.6 15.2 221 65-321 3-238 (262)
281 PF08324 PUL: PUL domain; Int 83.5 13 0.00029 36.7 11.3 146 133-283 80-236 (268)
282 PF01347 Vitellogenin_N: Lipop 83.2 57 0.0012 36.9 17.6 168 158-359 396-586 (618)
283 KOG2933 Uncharacterized conser 82.8 22 0.00047 35.1 11.5 137 293-471 90-233 (334)
284 KOG2011 Sister chromatid cohes 82.8 1.1E+02 0.0023 36.1 19.4 136 258-396 296-433 (1048)
285 PF11707 Npa1: Ribosome 60S bi 82.0 64 0.0014 33.0 18.2 154 209-362 58-237 (330)
286 PF14631 FancD2: Fanconi anaem 81.6 1.1E+02 0.0024 38.0 19.7 66 333-398 431-502 (1426)
287 KOG1788 Uncharacterized conser 80.7 1.2E+02 0.0026 35.3 23.6 109 228-342 663-783 (2799)
288 PF10363 DUF2435: Protein of u 80.0 3.6 7.8E-05 32.8 4.6 72 444-516 4-75 (92)
289 smart00638 LPD_N Lipoprotein N 79.8 67 0.0014 35.9 16.4 132 208-359 394-542 (574)
290 PF14225 MOR2-PAG1_C: Cell mor 79.7 62 0.0013 31.7 13.9 164 81-275 80-251 (262)
291 PF12031 DUF3518: Domain of un 79.4 4.6 0.0001 38.1 5.7 82 79-171 140-230 (257)
292 COG5218 YCG1 Chromosome conden 79.3 99 0.0021 33.5 19.6 112 93-236 82-196 (885)
293 PF12231 Rif1_N: Rap1-interact 79.0 87 0.0019 32.7 20.0 247 54-319 32-302 (372)
294 PF13251 DUF4042: Domain of un 79.0 41 0.00089 30.8 11.6 96 131-236 55-174 (182)
295 KOG0413 Uncharacterized conser 78.3 12 0.00026 42.4 9.3 129 128-279 943-1074(1529)
296 PF11822 DUF3342: Domain of un 78.2 1.1 2.4E-05 44.2 1.4 54 641-694 71-125 (317)
297 PLN03076 ARF guanine nucleotid 77.6 2E+02 0.0043 36.7 20.2 252 131-397 1152-1488(1780)
298 PF11865 DUF3385: Domain of un 77.5 14 0.00031 33.1 8.2 75 438-512 81-156 (160)
299 PF12830 Nipped-B_C: Sister ch 77.1 61 0.0013 29.9 13.9 72 207-283 8-79 (187)
300 PF08324 PUL: PUL domain; Int 76.9 21 0.00046 35.2 10.2 150 79-238 79-233 (268)
301 PF11864 DUF3384: Domain of un 76.7 1.2E+02 0.0025 32.9 19.9 69 444-512 251-329 (464)
302 KOG0413 Uncharacterized conser 74.9 12 0.00026 42.5 8.1 126 263-398 945-1073(1529)
303 COG5656 SXM1 Importin, protein 74.3 1.5E+02 0.0034 33.2 20.1 122 156-280 407-530 (970)
304 KOG1822 Uncharacterized conser 74.1 1.1E+02 0.0023 38.3 15.9 244 250-514 877-1128(2067)
305 KOG0891 DNA-dependent protein 70.7 2.9E+02 0.0063 36.3 19.4 175 218-400 540-721 (2341)
306 PF08167 RIX1: rRNA processing 70.2 40 0.00088 30.3 9.4 117 58-198 22-147 (165)
307 PF12231 Rif1_N: Rap1-interact 68.6 1.6E+02 0.0034 30.8 20.4 224 127-362 57-303 (372)
308 KOG2611 Neurochondrin/leucine- 67.9 1.7E+02 0.0037 31.0 17.6 133 78-219 26-164 (698)
309 PF12830 Nipped-B_C: Sister ch 67.7 1E+02 0.0022 28.4 12.2 143 159-320 10-167 (187)
310 KOG1992 Nuclear export recepto 66.5 2.4E+02 0.0051 32.2 17.5 277 158-470 235-525 (960)
311 cd03561 VHS VHS domain family; 65.9 62 0.0014 27.9 9.3 71 292-362 38-112 (133)
312 PF10521 DUF2454: Protein of u 65.2 56 0.0012 32.5 10.2 71 207-277 119-202 (282)
313 PRK09169 hypothetical protein; 64.5 4.2E+02 0.0092 34.4 23.6 16 345-360 412-427 (2316)
314 KOG0891 DNA-dependent protein 64.4 1.1E+02 0.0024 39.8 14.2 196 205-402 563-767 (2341)
315 KOG1848 Uncharacterized conser 63.4 1.3E+02 0.0027 36.4 13.2 26 445-470 1105-1130(1610)
316 KOG2011 Sister chromatid cohes 63.3 1.7E+02 0.0036 34.6 14.2 132 343-510 297-432 (1048)
317 cd03568 VHS_STAM VHS domain fa 61.3 32 0.00069 30.2 6.6 71 207-277 37-109 (144)
318 PF01603 B56: Protein phosphat 61.1 1.6E+02 0.0034 31.2 13.1 215 76-324 146-374 (409)
319 cd03569 VHS_Hrs_Vps27p VHS dom 61.1 1.1E+02 0.0025 26.6 10.5 71 207-277 41-113 (142)
320 PF08216 CTNNBL: Catenin-beta- 61.0 8.8 0.00019 31.3 2.8 42 461-502 64-105 (108)
321 cd03561 VHS VHS domain family; 59.8 45 0.00098 28.7 7.4 71 250-320 38-112 (133)
322 KOG1822 Uncharacterized conser 58.7 4.8E+02 0.01 33.1 18.3 110 209-321 878-989 (2067)
323 PF14726 RTTN_N: Rotatin, an a 58.7 81 0.0017 25.5 7.9 68 205-273 28-95 (98)
324 cd03568 VHS_STAM VHS domain fa 58.5 41 0.00088 29.5 6.8 72 249-320 37-110 (144)
325 cd03569 VHS_Hrs_Vps27p VHS dom 56.3 88 0.0019 27.3 8.5 71 292-362 42-114 (142)
326 KOG2676 Uncharacterized conser 56.2 17 0.00036 36.3 4.3 63 185-247 376-440 (478)
327 PF06012 DUF908: Domain of Unk 55.7 1.8E+02 0.0039 29.8 12.0 66 131-201 237-304 (329)
328 KOG2005 26S proteasome regulat 55.6 3.3E+02 0.0072 30.3 16.4 179 295-519 566-749 (878)
329 PF10521 DUF2454: Protein of u 55.6 1E+02 0.0022 30.7 10.1 70 250-319 120-202 (282)
330 PF06685 DUF1186: Protein of u 55.0 1.3E+02 0.0029 29.1 10.2 107 156-276 72-181 (249)
331 PF14726 RTTN_N: Rotatin, an a 54.0 1.1E+02 0.0023 24.8 7.9 64 331-394 28-96 (98)
332 PF06685 DUF1186: Protein of u 52.2 2.3E+02 0.005 27.5 13.3 119 55-204 29-152 (249)
333 PF00651 BTB: BTB/POZ domain; 52.2 25 0.00054 28.8 4.4 31 643-673 80-110 (111)
334 KOG4231 Intracellular membrane 52.1 11 0.00025 39.3 2.7 68 210-277 331-398 (763)
335 COG5098 Chromosome condensatio 51.0 4E+02 0.0087 29.9 23.5 116 371-515 301-417 (1128)
336 PF03130 HEAT_PBS: PBS lyase H 50.1 15 0.00033 21.4 1.9 26 132-167 1-26 (27)
337 PF13001 Ecm29: Proteasome sta 49.9 3.8E+02 0.0083 29.3 14.8 177 131-321 252-444 (501)
338 cd03567 VHS_GGA VHS domain fam 49.8 66 0.0014 28.0 6.7 70 208-277 39-115 (139)
339 PF14666 RICTOR_M: Rapamycin-i 49.7 2.4E+02 0.0052 26.9 12.3 141 76-235 77-224 (226)
340 PF13001 Ecm29: Proteasome sta 49.6 3.7E+02 0.0079 29.5 13.9 168 180-362 252-443 (501)
341 smart00288 VHS Domain present 49.6 1.3E+02 0.0028 26.0 8.5 71 292-362 38-111 (133)
342 KOG2075 Topoisomerase TOP1-int 48.6 24 0.00051 36.9 4.2 44 642-688 185-228 (521)
343 PF12074 DUF3554: Domain of un 48.6 3.2E+02 0.0069 28.0 12.8 78 220-301 175-254 (339)
344 KOG0301 Phospholipase A2-activ 48.5 2.4E+02 0.0052 31.3 11.6 152 257-412 552-718 (745)
345 PF04869 Uso1_p115_head: Uso1 48.2 3.1E+02 0.0067 27.8 13.5 155 158-316 35-227 (312)
346 PF01365 RYDR_ITPR: RIH domain 47.8 54 0.0012 30.9 6.4 110 148-260 34-153 (207)
347 PF01603 B56: Protein phosphat 47.5 3.7E+02 0.008 28.5 14.0 208 135-359 109-323 (409)
348 KOG3840 Uncharaterized conserv 46.9 19 0.00042 34.9 3.1 83 546-628 97-185 (438)
349 PF10274 ParcG: Parkin co-regu 46.9 97 0.0021 28.3 7.4 72 291-362 38-109 (183)
350 PF10274 ParcG: Parkin co-regu 46.0 2.4E+02 0.0052 25.8 10.4 80 207-286 38-117 (183)
351 PF07707 BACK: BTB And C-termi 45.5 32 0.0007 27.7 4.0 59 616-674 2-74 (103)
352 cd03567 VHS_GGA VHS domain fam 45.3 93 0.002 27.1 6.9 88 302-398 16-116 (139)
353 PF04388 Hamartin: Hamartin pr 45.2 2.4E+02 0.0052 32.1 11.9 138 103-279 3-141 (668)
354 PF01365 RYDR_ITPR: RIH domain 45.2 57 0.0012 30.7 6.2 80 221-303 75-154 (207)
355 KOG2676 Uncharacterized conser 45.1 29 0.00063 34.7 4.1 63 226-288 375-439 (478)
356 PF00790 VHS: VHS domain; Int 44.4 1.5E+02 0.0032 25.8 8.2 71 292-362 43-118 (140)
357 PF12726 SEN1_N: SEN1 N termin 43.6 2.6E+02 0.0056 32.4 12.3 158 208-380 442-601 (727)
358 smart00288 VHS Domain present 43.5 99 0.0022 26.6 6.9 71 106-194 39-111 (133)
359 PF12054 DUF3535: Domain of un 43.0 2.4E+02 0.0051 30.3 10.9 54 305-362 101-155 (441)
360 PF04388 Hamartin: Hamartin pr 42.4 3E+02 0.0065 31.4 12.1 135 207-362 4-140 (668)
361 KOG0301 Phospholipase A2-activ 42.2 5.3E+02 0.012 28.8 16.6 157 180-344 559-727 (745)
362 cd08050 TAF6 TATA Binding Prot 42.1 3E+02 0.0064 28.4 11.2 134 253-397 182-339 (343)
363 PF12463 DUF3689: Protein of u 42.1 3.7E+02 0.0081 27.0 11.4 77 248-324 94-177 (303)
364 PF09324 DUF1981: Domain of un 41.5 1.4E+02 0.0031 23.3 6.8 65 330-394 14-84 (86)
365 smart00567 EZ_HEAT E-Z type HE 40.5 36 0.00078 20.1 2.6 28 131-168 2-29 (30)
366 KOG2549 Transcription initiati 40.1 4.1E+02 0.0088 28.9 11.6 116 159-276 241-368 (576)
367 PF08216 CTNNBL: Catenin-beta- 39.6 55 0.0012 26.8 4.2 40 79-118 62-101 (108)
368 PRK09169 hypothetical protein; 38.0 1.1E+03 0.023 31.1 23.5 15 262-276 371-385 (2316)
369 KOG4390 Voltage-gated A-type K 37.9 4.6E+02 0.01 26.8 11.1 101 547-651 42-148 (632)
370 PF12074 DUF3554: Domain of un 37.4 4.7E+02 0.01 26.8 14.0 223 133-378 4-253 (339)
371 KOG1848 Uncharacterized conser 37.4 3.3E+02 0.0071 33.2 11.3 47 448-494 1002-1050(1610)
372 KOG2038 CAATT-binding transcri 36.9 2.4E+02 0.0051 31.9 9.6 74 332-405 303-377 (988)
373 PF12054 DUF3535: Domain of un 36.6 5.2E+02 0.011 27.7 12.3 94 221-318 101-195 (441)
374 KOG0392 SNF2 family DNA-depend 36.2 5.6E+02 0.012 31.1 12.7 167 305-475 143-328 (1549)
375 PF08389 Xpo1: Exportin 1-like 35.7 2.9E+02 0.0062 23.8 11.8 140 348-508 3-148 (148)
376 PF14225 MOR2-PAG1_C: Cell mor 35.0 4.5E+02 0.0097 25.8 19.2 64 442-506 187-250 (262)
377 PF12765 Cohesin_HEAT: HEAT re 33.9 48 0.001 21.8 2.6 24 333-356 18-41 (42)
378 PF11791 Aconitase_B_N: Aconit 33.7 1E+02 0.0022 27.0 5.2 45 265-320 79-123 (154)
379 PF14631 FancD2: Fanconi anaem 33.6 1.1E+03 0.023 29.9 17.8 30 369-398 431-464 (1426)
380 PF00790 VHS: VHS domain; Int 33.0 1E+02 0.0022 26.8 5.4 71 250-320 43-118 (140)
381 KOG4231 Intracellular membrane 32.7 34 0.00074 36.0 2.5 71 292-362 329-399 (763)
382 PF11791 Aconitase_B_N: Aconit 32.6 2.1E+02 0.0045 25.2 6.8 25 486-510 96-120 (154)
383 TIGR02425 decarb_PcaC 4-carbox 32.4 3.1E+02 0.0068 23.2 10.3 75 588-662 28-108 (123)
384 COG5537 IRR1 Cohesin [Cell div 31.8 5.4E+02 0.012 28.4 10.9 104 336-470 278-384 (740)
385 cd08050 TAF6 TATA Binding Prot 31.6 72 0.0016 32.8 4.8 84 59-144 212-296 (343)
386 KOG1992 Nuclear export recepto 31.3 8.7E+02 0.019 28.0 19.8 191 79-279 309-528 (960)
387 KOG1525 Sister chromatid cohes 30.8 1.1E+03 0.024 29.1 28.4 72 442-513 258-329 (1266)
388 PF09758 FPL: Uncharacterised 30.8 3.8E+02 0.0081 23.7 8.5 117 281-397 16-148 (149)
389 COG5537 IRR1 Cohesin [Cell div 30.7 4.1E+02 0.0089 29.2 9.9 135 259-397 285-421 (740)
390 PLN03205 ATR interacting prote 30.5 6.3E+02 0.014 26.2 11.9 189 293-494 325-545 (652)
391 PF12463 DUF3689: Protein of u 30.4 5.8E+02 0.012 25.7 14.8 134 150-283 2-178 (303)
392 KOG2199 Signal transducing ada 28.4 5.8E+02 0.013 26.4 10.0 71 292-362 46-118 (462)
393 PF06012 DUF908: Domain of Unk 28.0 2.4E+02 0.0052 28.8 7.9 63 79-150 238-303 (329)
394 KOG2005 26S proteasome regulat 27.8 9.1E+02 0.02 27.1 17.0 83 268-362 622-704 (878)
395 KOG2038 CAATT-binding transcri 27.3 9.8E+02 0.021 27.4 15.1 88 131-236 319-409 (988)
396 PF07923 N1221: N1221-like pro 26.4 70 0.0015 32.0 3.6 55 441-495 58-127 (293)
397 PLN03076 ARF guanine nucleotid 26.2 1.5E+03 0.033 29.3 20.4 131 180-318 1152-1297(1780)
398 PF08389 Xpo1: Exportin 1-like 26.2 1.3E+02 0.0029 26.0 5.1 71 55-140 76-148 (148)
399 KOG2213 Apoptosis inhibitor 5/ 26.1 7.6E+02 0.016 25.7 16.4 245 254-514 30-315 (460)
400 PHA02713 hypothetical protein; 25.4 91 0.002 34.7 4.6 33 641-673 90-122 (557)
401 PHA03098 kelch-like protein; P 25.3 1.5E+02 0.0032 32.8 6.3 32 642-673 73-104 (534)
402 PF12783 Sec7_N: Guanine nucle 25.3 2.4E+02 0.0053 25.3 6.7 80 328-407 68-155 (168)
403 KOG2149 Uncharacterized conser 25.2 6.2E+02 0.013 26.4 9.8 112 250-362 59-170 (393)
404 PF04499 SAPS: SIT4 phosphatas 24.6 6.8E+02 0.015 27.1 10.7 72 327-398 56-148 (475)
405 KOG2199 Signal transducing ada 24.6 1.7E+02 0.0037 30.0 5.6 90 426-515 26-120 (462)
406 PF08713 DNA_alkylation: DNA a 24.3 5.8E+02 0.013 23.7 10.8 140 107-290 54-196 (213)
407 KOG0392 SNF2 family DNA-depend 23.7 2.5E+02 0.0055 33.8 7.5 108 250-362 817-925 (1549)
408 cd03572 ENTH_epsin_related ENT 23.5 1.6E+02 0.0034 25.0 4.5 70 443-512 38-118 (122)
409 PF14663 RasGEF_N_2: Rapamycin 23.1 1.4E+02 0.003 25.0 4.2 39 207-246 8-46 (115)
410 cd03572 ENTH_epsin_related ENT 23.0 4.7E+02 0.01 22.2 10.0 40 105-156 39-80 (122)
411 PF04821 TIMELESS: Timeless pr 22.7 7.4E+02 0.016 24.3 11.2 170 207-406 13-216 (266)
412 PF07571 DUF1546: Protein of u 22.1 1.4E+02 0.003 23.8 3.8 61 127-193 17-77 (92)
413 KOG2229 Protein required for a 21.9 4.2E+02 0.0091 28.5 8.0 137 251-395 18-163 (616)
414 KOG2549 Transcription initiati 21.8 4.7E+02 0.01 28.4 8.5 109 58-169 240-351 (576)
415 KOG2073 SAP family cell cycle 21.5 6.6E+02 0.014 29.3 10.2 183 96-303 182-377 (838)
416 PF07571 DUF1546: Protein of u 21.0 1.7E+02 0.0037 23.2 4.1 59 75-143 18-76 (92)
417 cd00197 VHS_ENTH_ANTH VHS, ENT 20.8 4.4E+02 0.0095 21.7 6.9 73 106-192 39-113 (115)
418 KOG4524 Uncharacterized conser 20.8 2.8E+02 0.0061 32.2 7.0 95 207-302 803-900 (1014)
419 KOG2152 Sister chromatid cohes 20.3 1.3E+03 0.028 26.3 18.0 28 144-171 362-389 (865)
420 KOG2081 Nuclear transport regu 20.2 1.2E+03 0.025 25.7 24.5 230 157-399 153-419 (559)
421 KOG2723 Uncharacterized conser 20.2 1.5E+02 0.0032 28.1 4.1 69 569-638 34-106 (221)
422 KOG2152 Sister chromatid cohes 20.0 1.3E+03 0.029 26.3 20.4 60 55-118 330-389 (865)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=357.89 Aligned_cols=443 Identities=21% Similarity=0.224 Sum_probs=366.0
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..++.+++.|.+. ++..+..|+++|.+++.+ ++.+..+++.|+||.|+++|.++++. .+|+.
T Consensus 189 GaVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-----------~VRE~ 251 (2102)
T PLN03200 189 GGVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-----------SVRAE 251 (2102)
T ss_pred CCHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-----------HHHHH
Confidence 4677777777654 677899999999888874 78999999999999999999765431 89999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCcc-ccchhHHHHHHHHHHHHHhhcCCc-----------c---
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I--- 199 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~-~~~~~~v~~~a~~~L~~l~~~~~~-----------~--- 199 (712)
|+|+|.||+ +++++++.+++.|+++.|++++..+..... ......++++++|+|.|+|.+... .
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence 999999999 789999999999999999999985442110 001126688899999988863111 0
Q ss_pred -----------------------------------------------------------------hhHHHhcCChHHHHH
Q 005144 200 -----------------------------------------------------------------KTRVRMEGGIPPLVE 214 (712)
Q Consensus 200 -----------------------------------------------------------------~~~~~~~~~i~~L~~ 214 (712)
+..+.+.++++.|+.
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence 001112244555566
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
++...+.+++..++++|++|+.++++.+..+.+.|+++.|+.+|.+++..++..++++|++++..+++++..+++.|+++
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 66666778999999999999988888899999999999999999999999999999999999998888999999999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------------
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------------ 362 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------------ 362 (712)
.|+++|.+++..++++|+|+|+|++.++++.+..+.+.|+++.|+++|+++++++++.++++|.+++.
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~ 571 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA 571 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999999999999999999998655555556688999999999999999999999999999952
Q ss_pred --------------------------H-----HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc-CcchhHHHHhhC
Q 005144 363 --------------------------A-----GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVG 410 (712)
Q Consensus 363 --------------------------~-----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~ 410 (712)
. .....|+++.|++++.+++..+++.|+++|.+++. +++....++..|
T Consensus 572 LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag 651 (2102)
T PLN03200 572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651 (2102)
T ss_pred HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence 0 01146899999999999999999999999999965 566678899999
Q ss_pred ccccccccchhhh-hhhhHHHHHHHHHH---------HhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchh
Q 005144 411 GVQKLQDGEFIVQ-ATKDCVAKTLKRLE---------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF 480 (712)
Q Consensus 411 ~i~~L~~~~~~~~-~~~~~~~~~l~~l~---------~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 480 (712)
++++++....... ..+.-..+.+.++. ...+.++++.|+++|++.+..++..|+.+|.+++..++.+..+
T Consensus 652 aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei 731 (2102)
T PLN03200 652 IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEA 731 (2102)
T ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHH
Confidence 9999887554322 12222333332222 2347889999999999999999999999999999999998888
Q ss_pred hccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 481 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 481 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
...|+++.|++++.++++..|+.|+++|.+|.++.+
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999998776
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-37 Score=309.17 Aligned_cols=318 Identities=25% Similarity=0.360 Sum_probs=293.2
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..++.+|+.|... .++..+.+|+|+|.|+++ +++....++++|++|.++.++.+++. .|+++
T Consensus 109 G~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQ 171 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQ 171 (514)
T ss_pred CcHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHH
Confidence 5677777777644 467789999999999999 57888899999999999999999988 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
|.|+|+|++ +++.+|+.+++.|++++|+.++...... .+.+.+.|+|.|+|.+..+....-....++|.|..
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999877653 78899999999999876555555556689999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
++.+.|+++...|+|+|++|+.+.++....+++.|+++.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~ 324 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP 324 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHH
Q 005144 295 PVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIA 366 (712)
Q Consensus 295 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~ 366 (712)
.|..++. +....++++|||+++|++.++.++.+.+++.|++|.|+.+|++.+.++|+.|+|+++|++. ..++
T Consensus 325 ~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 325 VLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 9999999 5566699999999999999999999999999999999999999999999999999999998 8899
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 367 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
+.|++++|+++|...+..+...++.+|.|+-.
T Consensus 405 ~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999854
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.2e-37 Score=284.03 Aligned_cols=320 Identities=22% Similarity=0.311 Sum_probs=288.0
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
...++|++|+++.+. +..-.+.+|+|+|.|++++ ......++++|++|.++++|.+++. +|+
T Consensus 112 daGvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~ 174 (526)
T COG5064 112 DAGVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVR 174 (526)
T ss_pred hccccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHH
Confidence 445788888888654 3444688999999999995 6666778899999999999999988 999
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 005144 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (712)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (712)
+++.|+|+|++ +++.+|+.+++.|++++++.++.++.. ...+.+++.|.|+|+|++..+...+-.....+|.|
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~------~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL 248 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI------HISMLRNATWTLSNLCRGKNPPPDWSNISQALPIL 248 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc------hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHH
Confidence 99999999999 889999999999999999999986543 23889999999999998755545555556789999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 213 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
.+++.+.|+++...|+|++.+|+.+..+....+.+.|..+.|+.+|.+++..++..|++.++|+..+++...+.+++.|+
T Consensus 249 ~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 249 AKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred HHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc
Confidence 99999999999999999999999877788889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---------H
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---------A 363 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---------~ 363 (712)
++.+..+|++....+|+++||++.|++.++.++.+.+++.+++|.|+++|.+-+..+++.|||++.|.+. .
T Consensus 329 L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 9999999999988999999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005144 364 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 364 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
.+++.|++.+|+++|.-.+..+.+.++.++.|+-
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 8899999999999998877777777788887764
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=332.55 Aligned_cols=441 Identities=23% Similarity=0.253 Sum_probs=364.4
Q ss_pred HHHHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHh-cCCHHHHHhhhcCCCCCccccCCCccc
Q 005144 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFE 129 (712)
Q Consensus 52 ~~~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~~~~~~~ 129 (712)
++.....+..+++.|.+... +++.+..++..|..++. ++++|..+.+ .|++|.|+.+|.+++.
T Consensus 8 ~~~~~~~v~~Lve~L~s~~s----s~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~----------- 72 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSS----SPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL----------- 72 (2102)
T ss_pred ccchHHHHHHHHHHHHcccC----CHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCH-----------
Confidence 34456667788888886632 34568889999999998 6888998886 8999999999998776
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC--Ccch-hHHHhc
Q 005144 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SSIK-TRVRME 206 (712)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~-~~~~~~ 206 (712)
.++..|+.+|.+++..++++..+...|++++|+.+|++.+. +.++.|+++|.+++..+ +.++ .+++..
T Consensus 73 -~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~--------eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~ 143 (2102)
T PLN03200 73 -GAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSA--------EAQKAAAEAIYAVSSGGLSDHVGSKIFSTE 143 (2102)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCH--------HHHHHHHHHHHHHHcCcchhhhhhhhhhhc
Confidence 89999999999999889999999999999999999988765 99999999999999754 3333 456789
Q ss_pred CChHHHHHhhcCCC---HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 207 GGIPPLVELLEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 207 ~~i~~L~~lL~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
|++|.|+.++++++ ..++..++.+|.||+...+.....+++.|+++.++.+++++++.++..|+++|.+++.+.++.
T Consensus 144 GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 144 GVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS 223 (2102)
T ss_pred CChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999864 346788899999999755555567789999999999999999999999999999999887888
Q ss_pred HHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCC---------HHHHHHH
Q 005144 284 KKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD---------VQLREMS 353 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~---------~~v~~~a 353 (712)
+..+++.|+++.|+++|+++ +..++++|+|+|+|++.++++++..+++.|++|.|++++.+++ ...+++|
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 99999999999999999864 5689999999999999988999999999999999999997544 3468999
Q ss_pred HHHHHHHHH---H---HH-------------Hh------------------------cCChHHHHHhhccCChh-HHHHH
Q 005144 354 AFALGRLAQ---A---GI-------------AH------------------------NGGLVPLLKLLDSKNGS-LQHNA 389 (712)
Q Consensus 354 ~~~L~~l~~---~---~~-------------~~------------------------~~~i~~L~~ll~~~~~~-v~~~a 389 (712)
.|+|.|++. . .+ .+ ..+.+.|++++.++++. ++..+
T Consensus 304 vwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 304 MGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 999999886 1 00 00 12235677777666554 47888
Q ss_pred HHHHHhcccCcchhHHHHhhCccccccccchhhh-hhhhHHHHHHH--------HHHHhhhhhhHHHHHHHHhhhhhhHH
Q 005144 390 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLK--------RLEEKIHGRVLNHLLYLMRVAEKGVQ 460 (712)
Q Consensus 390 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~-~~~~~~~~~l~--------~l~~~~~~~~~~~Lv~ll~~~~~~v~ 460 (712)
..+|..+..++..+..+.+.++++.|+....... ..+....+.+. ......+.++++.|+++|.++++.+|
T Consensus 384 ~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ 463 (2102)
T PLN03200 384 IEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQ 463 (2102)
T ss_pred HHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHH
Confidence 8888888888888888888898888887655222 22222333322 23344577899999999999999999
Q ss_pred HHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 461 RRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 461 ~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
..|+++|++++...+ ++..+.+.|++|.|+++|.+++..+|+.|+|+|.|++.+..
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 999999999987554 78888999999999999999999999999999999998653
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-35 Score=293.35 Aligned_cols=401 Identities=19% Similarity=0.289 Sum_probs=337.2
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (712)
.....+.++..+.+. ++..+..+...++.+.+. ......++..|++|.++..|...+.+ .+
T Consensus 64 ~~~~~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~-----------~l 126 (514)
T KOG0166|consen 64 QASNLELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNP-----------TL 126 (514)
T ss_pred HhhhhHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCCh-----------hH
Confidence 334456666666665 666688888888887763 24455666779999999999865532 89
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 005144 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (712)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (712)
+..|+|+|.||+ ++.+....+++.|+++.++.++.+++. .+++.|+|+|+|++.+.+.+|..+...|++++
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 999999999999 889999999999999999999999888 99999999999999999999999999999999
Q ss_pred HHHhhcCCCH-HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 212 LVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 212 L~~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
|+.++..++. ...+.+.|+|.|||.+....-..-.-..+++.|..++.+.|++|...|+|+|+.|+.+..+..+.+++.
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 9999988775 788899999999998653222222223579999999999999999999999999999888999999999
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH------H
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ------A 363 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~------~ 363 (712)
|+++.|+.+|...+..++..|..+++|++.+++.+...++..|++|.|..++. +....++++|+|+++|++. +
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 5566699999999999998 7
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc--CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh
Q 005144 364 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 441 (712)
Q Consensus 364 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (712)
.+.+.|.++.|+.++++.+..+|+.|+|+|.|++. +++....+++.|.|++
T Consensus 359 aVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~p--------------------------- 411 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKP--------------------------- 411 (514)
T ss_pred HHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchh---------------------------
Confidence 89999999999999999999999999999999965 3555566777776655
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC---------CcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhh
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP---------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~---------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~ 512 (712)
+..+|...+..+...++-+|.++-.- ......+.+.||+..+-.|-.+.+.++-..|-..+.+.-
T Consensus 412 ------lcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 412 ------LCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred ------hhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence 55556555666666666666666221 224556788999999999999999999888877776554
Q ss_pred c
Q 005144 513 N 513 (712)
Q Consensus 513 ~ 513 (712)
.
T Consensus 486 ~ 486 (514)
T KOG0166|consen 486 S 486 (514)
T ss_pred C
Confidence 4
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-33 Score=261.69 Aligned_cols=405 Identities=20% Similarity=0.283 Sum_probs=332.6
Q ss_pred HHHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc--ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccH
Q 005144 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (712)
Q Consensus 53 ~~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~ 130 (712)
+...+..|.+...|-+. |-+.+..|..-++.+.+ +....+.++++|++|.+++++......
T Consensus 67 qq~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~----------- 129 (526)
T COG5064 67 QQFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD----------- 129 (526)
T ss_pred HHhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-----------
Confidence 33455667766666554 78889999999998876 456677899999999999999654442
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
-.+-.|+|+|.|++ +.....+.+++.|++|.++++|.+... +++++++|+|+|++.+++.+|..+.+.|++
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCch
Confidence 67889999999999 666777788899999999999998887 999999999999999999999999999999
Q ss_pred HHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 210 PPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 210 ~~L~~lL~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
.+++.++.++.+ .+.+.+.|.|.|||.+....-.--.-...+|.|.+++-+.++++...|+|+++.|+.+..+..+.+
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 999999987654 788999999999998543322221112369999999999999999999999999999888889999
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----
Q 005144 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----- 362 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----- 362 (712)
++.|..+.|+++|.+.+..++..+...++|+..+++.+...++..|+++.+..+|.++...+|+.+||++.|++.
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteq 361 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ 361 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHH
Confidence 999999999999999999999999999999999999998999999999999999999889999999999999997
Q ss_pred -HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC----cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHH
Q 005144 363 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN----EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 437 (712)
Q Consensus 363 -~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~ 437 (712)
+.+.+.+.+|+|+.+|++.+..+++.|||++.|.+.. |+..+.+++.|.|.+
T Consensus 362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ikp----------------------- 418 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKP----------------------- 418 (526)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhH-----------------------
Confidence 8899999999999999999999999999999999764 334445555665555
Q ss_pred HhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc------------ccchhhccCchHHHHHHhcCCCchhhhhhH
Q 005144 438 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGA 505 (712)
Q Consensus 438 ~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~ 505 (712)
|..+|...+..+-.-++-++.|+-...+ +...+.+.||+..+-.+-.+.|..+-..|-
T Consensus 419 ----------Lc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAY 488 (526)
T COG5064 419 ----------LCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAY 488 (526)
T ss_pred ----------HHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHH
Confidence 4444544443333334444444422211 233445689999999999999999988887
Q ss_pred HHHHhhhccc
Q 005144 506 VALFKLANKA 515 (712)
Q Consensus 506 ~~L~~L~~~~ 515 (712)
..+.......
T Consensus 489 sIIe~fFgee 498 (526)
T COG5064 489 SIIEKFFGEE 498 (526)
T ss_pred HHHHHHcccc
Confidence 7776665443
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-33 Score=259.86 Aligned_cols=358 Identities=28% Similarity=0.372 Sum_probs=323.4
Q ss_pred cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
....++++-++++.++ .++..+..+++|++.+.+++-.+++.+++.+|+.-+..+.. +++
T Consensus 84 res~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evq 143 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQ 143 (550)
T ss_pred hhhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEE
Confidence 3456788888988887 99999999999999878888888899999999887776666 889
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
..+++|++|++.- +.++..+...|++.++.++-++.+..++.++.++|.|++ +..++++.++..|++|.|+.++++++
T Consensus 144 cnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 144 CNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred eeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCC
Confidence 9999999999974 778888999999999999999999999999999999999 48899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcC--ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHH
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ 340 (712)
.+++..++.+++|++.. ...++.+.+.+ .++.|++++.++++.++.+|..+|+|+++ +.+.+..+++.|.+|.+++
T Consensus 222 ~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred hhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHH
Confidence 99999999999999865 56678888777 99999999999999999999999999996 6788888999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhccc-CcchhHHHHhhCccc
Q 005144 341 MLQSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQ 413 (712)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~ 413 (712)
+++++.-...-....++.|++- ..+.+.|++.+|+++|..++ .+++..|..+|+||+. +..++..+.++|+++
T Consensus 300 Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~ 379 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP 379 (550)
T ss_pred HHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH
Confidence 9998877777788899999998 67889999999999997765 6699999999999976 688888888888554
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHh
Q 005144 414 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 493 (712)
Q Consensus 414 ~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll 493 (712)
.+..++.++.-++|.....++..|+..+..+..+.+.|.++.|+.++
T Consensus 380 ---------------------------------kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 380 ---------------------------------KLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT 426 (550)
T ss_pred ---------------------------------HHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence 57888999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhhhHHHHHhhhccccc
Q 005144 494 GSTNPKQQLDGAVALFKLANKATT 517 (712)
Q Consensus 494 ~~~~~~~~~~a~~~L~~L~~~~~~ 517 (712)
.+.+.+++..|+.+|.||+++-..
T Consensus 427 ~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 427 GSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred CccchhhcccHHHHHHhhhhhhHH
Confidence 999999999999999999987543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=250.11 Aligned_cols=383 Identities=22% Similarity=0.271 Sum_probs=339.6
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (712)
++.++..+...++|++-+-+++..+++-+++..|+.-+..+.. ++|..+..++.||+.-.+++..+..
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehhhhhhhhccccchhhhhh
Confidence 7888999999999999988888889999999998888877777 8999999999999966888999999
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
.|++.++.++-+..+. .+++++..+|.|+.. ..++++.++..|++|.|+.+++++|+.++..++.++.|++
T Consensus 166 sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred ccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 9999999996666555 999999999999986 7778889999999999999999999999999999999999
Q ss_pred cCChhcHHHHHhCC--CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHH
Q 005144 236 FKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (712)
Q Consensus 236 ~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (712)
. +...++.+.+.+ +++.|+++++++++.++..|.-+|+|++.. .+....+.+.|.+|.++++|+++..........
T Consensus 237 V-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 237 V-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 6 667778888776 999999999999999999999999999876 566788899999999999999988888889999
Q ss_pred HHHHHhcCCcchhhhhhhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHH
Q 005144 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQ 386 (712)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~ 386 (712)
++.|++- .+-+...+++.|++.+|+.+|..+ +.+++..|..+|+||+. ..+.+.|+++.++.++.+..-.+|
T Consensus 315 CIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 9999986 567778899999999999999764 55699999999999998 788999999999999999999999
Q ss_pred HHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 005144 387 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 466 (712)
Q Consensus 387 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~ 466 (712)
.....++..|+-+...+..+.+.|.++. |+++..+.+.+++-+|+.+
T Consensus 394 seisac~a~Lal~d~~k~~lld~gi~~i---------------------------------LIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 394 SEISACIAQLALNDNDKEALLDSGIIPI---------------------------------LIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred HHHHHHHHHHHhccccHHHHhhcCCcce---------------------------------eecccCccchhhcccHHHH
Confidence 9999999999999999999999886665 5566778889999999999
Q ss_pred HHHhcCCCcccchhhcc-----Cch-HHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 467 LAHLCSPDDQRTIFIDG-----GGL-ELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 467 L~~l~~~~~~~~~l~~~-----~~~-~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
|.||+.+.++...+++. +|+ ..|.+++.+....++.-+.|.+.+|..+.
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999888744444333 333 57889999988899999999999999763
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.7e-22 Score=217.15 Aligned_cols=374 Identities=19% Similarity=0.226 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (712)
..+.++..|.|++.++.....+.+.|+++.|+++|++.+. ++...++.+|.+|+-..+++..+.+.|+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 5667888999999999999999999999999999998877 8999999999999988889999999999
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~ 238 (712)
++.|.+++.+.+. +++..++++|.|++. ++..+..++..|++|.|+.+|.++ ..+..++.+|.+|+. +
T Consensus 333 V~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-d 400 (708)
T PF05804_consen 333 VEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-D 400 (708)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-C
Confidence 9999999988765 899999999999998 778899999999999999999865 456679999999996 7
Q ss_pred hhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 005144 239 DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (712)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (712)
+..+..+...++++.+++++.. +++.+...+++.+.|++.. +.+.+.+.+.|+++.|+...-.....+ ....+.|
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRN 476 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRN 476 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHH
Confidence 7888889889999999997654 5677888899999999865 677788889899999998775543222 3458999
Q ss_pred HhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccC--ChhHHHH
Q 005144 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSK--NGSLQHN 388 (712)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~--~~~v~~~ 388 (712)
++.+++..+..+. +++..|+..+.. .+++..-.+.++|+|+.. ..+.+.+.++.|.+.|..+ ++.+.-.
T Consensus 477 iS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 477 ISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred HHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 9987655555444 477777777754 577888899999999986 4556679999999999543 4678889
Q ss_pred HHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh--hhhHHHHHHHH
Q 005144 389 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALA 466 (712)
Q Consensus 389 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~--~~~v~~~a~~~ 466 (712)
++..++.++.++.....+.+.| +++.|+.++... |.+...+.+.+
T Consensus 555 ~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 555 VVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred HHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHHHHH
Confidence 9999999999888877777776 455577888766 68899999999
Q ss_pred HHHhcCCCcccchhhc-cCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 467 LAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 467 L~~l~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.++...++.+..+.+ .+++.-|+.++.++|+.+|+.|-.+|--++...
T Consensus 602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999888887776655 567778999999999999999999997777653
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=6.4e-25 Score=238.01 Aligned_cols=158 Identities=20% Similarity=0.310 Sum_probs=147.2
Q ss_pred HhhhcCCCcccEEEEec-CccchhhHHHhhhcCHHHHHhccCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCCCCCChh
Q 005144 536 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 613 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 613 (712)
..++.++.++||++.++ |+.|+|||.||+++|+||++||.++|+|.. .++|.|.++++++|+.+|+|+|||+ ++.+
T Consensus 17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHH
Confidence 45788999999999997 899999999999999999999999999864 7899999999999999999999997 6899
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHH
Q 005144 614 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 693 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~ 693 (712)
++.+++.+|++|+++.++..|+++|.++++++||+.++..|..+.+..|.+.|.+|+.+||.++.++++|.+|+.+.+.+
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~ 174 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFD 174 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999996665444
Q ss_pred HH
Q 005144 694 IH 695 (712)
Q Consensus 694 l~ 695 (712)
++
T Consensus 175 lL 176 (557)
T PHA02713 175 II 176 (557)
T ss_pred Hh
Confidence 43
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=4.7e-24 Score=229.76 Aligned_cols=158 Identities=28% Similarity=0.446 Sum_probs=152.4
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
+.++..+.+|||++.++++.|+|||.||++.|+||+.||.++++|+...+|.+.++++++++.+++|+||+.+.++.+++
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhH
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHH
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 693 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~ 693 (712)
.+++.+|++|||+.++..|.++|...+.++||+.+..+|+.|++.+|.+.+..|+.+||.++.++++|..|+.+.+.+
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996654433
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=230.72 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=137.4
Q ss_pred hhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 538 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 538 ~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
+...+.++||.... |+.|+|||.||++.|+||++||.++|+|++. +|.+ .++++++++.+|+|+|||++.++.+++
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV 93 (480)
T PHA02790 16 LSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNV 93 (480)
T ss_pred HHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccH
Confidence 45678899987655 5589999999999999999999999999865 4655 389999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCC--chhhhch
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI 687 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~--~~f~~l~ 687 (712)
.+++.+|++|+++.+++.|+++|.+.++++||+.++.+|+.|++++|.+.+.+|+.+||.++.++ ++|.+|+
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987 8998875
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=6.1e-24 Score=233.37 Aligned_cols=151 Identities=23% Similarity=0.423 Sum_probs=144.1
Q ss_pred cCCCcccEEEEe--cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHHH
Q 005144 540 NNATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 617 (712)
Q Consensus 540 ~~~~~~D~~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 617 (712)
.++.+||+.+.+ +|+.|+|||.||+++|+||++||.++|+ ...|.+.+ ++++|+.+|+|+|||++.++.+++.+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHH
Confidence 388999999998 9999999999999999999999999998 46899999 99999999999999999999999999
Q ss_pred HHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHH
Q 005144 618 LLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 694 (712)
Q Consensus 618 l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 694 (712)
++.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987765554
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=1.5e-20 Score=175.67 Aligned_cols=398 Identities=17% Similarity=0.180 Sum_probs=306.6
Q ss_pred cchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-
Q 005144 14 RKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK- 92 (712)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~- 92 (712)
+.+..+...+.+.||+.|+....++++.....+.... . . +...+..+...+. +...+....|.+++.
T Consensus 22 ~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~q---p-~--i~~~~~~i~e~i~------~~~~E~s~ll~~l~d~ 89 (461)
T KOG4199|consen 22 SMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQ---P-V--INETVDKIKEHIG------QKLEETTELLEQLADE 89 (461)
T ss_pred hcCccccchHHHHHHHhccCcccccccccCCCCCCCC---c-c--HHHhHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 3444566778899999999999999988653322221 1 1 3333333333322 122333334444432
Q ss_pred ---ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhc
Q 005144 93 ---NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKR 168 (712)
Q Consensus 93 ---~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~ 168 (712)
+..+|....+.|..+.++.++...+.+ +..+..+++.+|..+. ..|++ ++..++..++.+|..
T Consensus 90 ck~~~A~r~la~~~ga~~~~it~~~la~~~---------~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~ 156 (461)
T KOG4199|consen 90 CKKSLAHRVLAGKNGAHDALITLLELAESP---------NESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLAL 156 (461)
T ss_pred HhhhHHHHHHhccCCCcchhhhHHHHhhCC---------chhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhc
Confidence 356677777889999888877643331 2367888999999999 77765 677889999999976
Q ss_pred ccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCh--------
Q 005144 169 HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND-------- 239 (712)
Q Consensus 169 ~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~-------- 239 (712)
..+. .++....+.++..-|..++.+++.+++.++.+.+...|.. +...+.+.++++++.|..+++
T Consensus 157 ~~~~------~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~a 230 (461)
T KOG4199|consen 157 KVES------EEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQA 230 (461)
T ss_pred ccch------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchh
Confidence 6542 3888888999999999999999999999999999976654 445688899999999997554
Q ss_pred -hcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCC-h---hhHHHHHH
Q 005144 240 -ENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S---ESQREAAL 313 (712)
Q Consensus 240 -~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~---~v~~~a~~ 313 (712)
...+.+...|++..|+..++.. +|.+...++.+|..|+.. .+.++.+.+.|+++.++.++.+++ . .+.+.++.
T Consensus 231 h~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ls 309 (461)
T KOG4199|consen 231 HGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLS 309 (461)
T ss_pred hHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 2245677788899999998875 688999999999999876 688999999999999999998753 2 35578888
Q ss_pred HHHHHhcCCcchhhhhhhcCChHHHHHHh--CCCCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhh--ccCCh
Q 005144 314 LLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLL--DSKNG 383 (712)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll--~~~~~ 383 (712)
.|..++ ++++++..+++.|+.+.++.++ .+.+|.+.+.++.+++-|+. ..+++.|+-...++.| +....
T Consensus 310 lLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a 388 (461)
T KOG4199|consen 310 LLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA 388 (461)
T ss_pred HHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH
Confidence 999998 5789999999999999999998 55899999999999999998 7888999999999999 44568
Q ss_pred hHHHHHHHHHHhc-ccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHH
Q 005144 384 SLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR 462 (712)
Q Consensus 384 ~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~ 462 (712)
.+|++++++++|+ +++.+++..+...| ++.|+..-+..++.+...
T Consensus 389 ~vQrnac~~IRNiv~rs~~~~~~~l~~G----------------------------------iE~Li~~A~~~h~tce~~ 434 (461)
T KOG4199|consen 389 QVQRNACNMIRNIVVRSAENRTILLANG----------------------------------IEKLIRTAKANHETCEAA 434 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHhcc----------------------------------HHHHHHHHHhcCccHHHH
Confidence 9999999999999 56677777777765 455777778888888888
Q ss_pred HHHHHHHhcCCCcccc
Q 005144 463 VALALAHLCSPDDQRT 478 (712)
Q Consensus 463 a~~~L~~l~~~~~~~~ 478 (712)
|-.+|..|-.+...++
T Consensus 435 akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 435 AKAALRDLGCDVYLRE 450 (461)
T ss_pred HHHHHHhcCcchhhHH
Confidence 8888988866655443
No 15
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.89 E-value=3.7e-23 Score=196.57 Aligned_cols=161 Identities=30% Similarity=0.502 Sum_probs=152.9
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCC---Ch
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL 612 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~ 612 (712)
.+++....++||+|+++++.|++||.||++||.||++|+.++|+|++...|+|.+-+.++|+.+|+|+|||++.+ .+
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 446677889999999999999999999999999999999999999999999999989999999999999999984 57
Q ss_pred hhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHH
Q 005144 613 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 692 (712)
Q Consensus 613 ~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~ 692 (712)
+.+.+.+.+|++|+++.|.....+++.+.+..+|++.++..|..|+.++|.+.|+.|.-+|..++...|.|+.|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHH
Q 005144 693 EIHN 696 (712)
Q Consensus 693 ~l~~ 696 (712)
+++.
T Consensus 196 e~l~ 199 (620)
T KOG4350|consen 196 ELLA 199 (620)
T ss_pred HHHh
Confidence 7654
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=4.1e-20 Score=198.86 Aligned_cols=355 Identities=20% Similarity=0.230 Sum_probs=292.0
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
.-..+++.|.+.++++ +.+....++..|.+++-..+++..+.+.|+++.|.+++.+.+. +++..++
T Consensus 287 ~~~~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~------------~l~~~aL 352 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE------------DLVNVAL 352 (708)
T ss_pred HhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH------------HHHHHHH
Confidence 3445666666666554 6778999999999999999999999999999999999998877 8999999
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc
Q 005144 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (712)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 217 (712)
++|.||+.+++.|..++..|++|.|+.+|.++ ..+..++.+|++++. ++..+..+...+++|.+++++.
T Consensus 353 rlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 353 RLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999754 445678999999998 6678888888999999999875
Q ss_pred C-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005144 218 F-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (712)
Q Consensus 218 ~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L 296 (712)
+ +++.+...++.++.||+. ++.+.+.+.+.++++.|+...-.... .-.+..+.|++.+++..+..+ .+.+..|
T Consensus 422 ~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f--~~~i~~L 495 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELF--VDFIGDL 495 (708)
T ss_pred hCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHH--HHHHHHH
Confidence 4 567778888999999996 78888888888999999987644332 224568999998765544433 2467777
Q ss_pred HHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHHH-----HHHHhc
Q 005144 297 IGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ-----AGIAHN 368 (712)
Q Consensus 297 ~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~-----~~~~~~ 368 (712)
+.++..+ +++...++.++|+|++..+.+....+.+.+++|.|.+.|.. ..+++.-.++..++.++. ..+.+.
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s 575 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS 575 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 7777654 78899999999999987655666666678999999999954 456788888999999887 667788
Q ss_pred CChHHHHHhhcc--CChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH
Q 005144 369 GGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 446 (712)
Q Consensus 369 ~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 446 (712)
|.++.|+.++.+ .|.++....+.+...+..+++.+..+.+.. ++..
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~--------------------------------~~~~ 623 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET--------------------------------EIPA 623 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc--------------------------------chHH
Confidence 999999999954 568999999999999999998888776632 2456
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 447 HLLYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 447 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
.|+.++.+.++.++..|-.+|.-++..+.
T Consensus 624 ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 624 YLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 79999999999999999999988876544
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=1.1e-18 Score=182.80 Aligned_cols=354 Identities=23% Similarity=0.261 Sum_probs=280.2
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
+|-.+..|.+.++ .++..|+.-+..+| ++.+.+..+.+.|+|+.|+.+|..... +++..
T Consensus 235 lpe~i~mL~~q~~------------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~ 294 (717)
T KOG1048|consen 235 LPEVISMLMSQDP------------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQ 294 (717)
T ss_pred cHHHHHHHhccCh------------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHH
Confidence 5556666666666 79999999999999 888999999999999999999999887 99999
Q ss_pred HHHHHHHHhhcCCc--chhHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC
Q 005144 185 AADAITNLAHENSS--IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (712)
Q Consensus 185 a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~ 261 (712)
++++|.||..+... ++..+...++++.++++|+. .|.++++.+..+|+||++ ++..+..++.. .+..|..-+-.+
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P 372 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIP 372 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhccc
Confidence 99999999977655 88889999999999999987 789999999999999997 56666666654 566665543211
Q ss_pred --------------CHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHHhhcc------CChhhHHHHHHHHHHHhc
Q 005144 262 --------------DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (712)
Q Consensus 262 --------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 320 (712)
+.++..++..+|.|++....+.++.+.+ .|+++.|+..++. .+....+++..++.|++-
T Consensus 373 ~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 373 HSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 2568899999999999877788888877 6889999988873 467788999999999872
Q ss_pred CCc-------------------------------chhhh----------------------hhhcCChHHHHHHh-CCCC
Q 005144 321 TDS-------------------------------DCKVH----------------------IVQRGAVRPLIEML-QSPD 346 (712)
Q Consensus 321 ~~~-------------------------------~~~~~----------------------l~~~~~l~~L~~ll-~~~~ 346 (712)
.-. ..... +.+..++...+.++ .+.+
T Consensus 453 rl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n 532 (717)
T KOG1048|consen 453 RLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN 532 (717)
T ss_pred hhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence 110 00000 22233444444445 4578
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccc
Q 005144 347 VQLREMSAFALGRLAQ-----------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 415 (712)
Q Consensus 347 ~~v~~~a~~~L~~l~~-----------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L 415 (712)
+.+.++++++|-|++. ..+....+++.|+++++..+..+...++.+|+||+.+..++..+..
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk------- 605 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK------- 605 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc-------
Confidence 8999999999999998 3447789999999999999999999999999999999988776653
Q ss_pred cccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh------hhhHHHHHHHHHHHhc-CCCcccchhhccCchHH
Q 005144 416 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKGVQRRVALALAHLC-SPDDQRTIFIDGGGLEL 488 (712)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~~~~ 488 (712)
.+++.|++.|.++ +.++...++.+|.++. .+..+.+.+.+.+|++.
T Consensus 606 ---------------------------~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 606 ---------------------------YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred ---------------------------chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 2466677777655 3578899999999997 55568889999999999
Q ss_pred HHHHhcCCCc-hhhhhhHHHHHhhhccc
Q 005144 489 LLGLLGSTNP-KQQLDGAVALFKLANKA 515 (712)
Q Consensus 489 L~~ll~~~~~-~~~~~a~~~L~~L~~~~ 515 (712)
|+.+..+... .+.++|+..|..|=.+.
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999988444 56667777666665443
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=189.38 Aligned_cols=362 Identities=19% Similarity=0.225 Sum_probs=277.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCC
Q 005144 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGA 158 (712)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~ 158 (712)
..+..+.|..++.+++.+..++..|++|.|+++|..++. .+.+.+..|-.+|.||. .+|+....-.+..+
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~---------~~kear~~A~aALHNIVhSqPD~kr~RRE~kv 281 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDD---------EDKEARKRASAALHNIVHSQPDEKRGRREKKV 281 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCch---------hhHHHHHHHHHHHHHHhhcCcchhhhHHHHHH
Confidence 577889999999999999999999999999999988776 25589999999999999 66665433333333
Q ss_pred hHHHHHHH----------hcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC-----C----
Q 005144 159 LSHLVNLL----------KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----T---- 219 (712)
Q Consensus 159 l~~L~~lL----------~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~---- 219 (712)
+..|-++. ..............-+..|+.+|..+++ +++.|..+.+.|++..+-+|+.- .
T Consensus 282 L~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 282 LHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 33332222 1111111111111333467778888887 78889999999999999998751 1
Q ss_pred ---CHHHHHHHHHHHHHhhcCChhcHHHHHh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-HcCChH
Q 005144 220 ---DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQ 294 (712)
Q Consensus 220 ---~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~l~ 294 (712)
...+|.++..+|-||++++..++..+.. .|+++.++..|.+...++..-.+..|.||+...+.+.+.++ +.|-+.
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 2469999999999999988888887764 68999999999998889999999999999987665555444 577787
Q ss_pred HHHHhh-ccCChhhHHHHHHHHHHHhcCCcchhhhhhh-cCChHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHhc
Q 005144 295 PVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS----PDVQLREMSAFALGRLAQAGIAHN 368 (712)
Q Consensus 295 ~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~ 368 (712)
.|...- ....+...+..+.+||||+.+..+++..+.. .|++..|+.+|.- +.-.+.+.+.++|.|++.
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS------ 514 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS------ 514 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh------
Confidence 777655 4455677888999999999999999888876 5888889888843 233444444444444333
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHH
Q 005144 369 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 448 (712)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~L 448 (712)
.|+..+.+++.+.+++ ++..|
T Consensus 515 --------------------------~IAt~E~yRQILR~~N---------------------------------CLq~L 535 (2195)
T KOG2122|consen 515 --------------------------LIATCEDYRQILRRHN---------------------------------CLQTL 535 (2195)
T ss_pred --------------------------HhhccchHHHHHHHhh---------------------------------HHHHH
Confidence 2334556666666654 56678
Q ss_pred HHHHhhhhhhHHHHHHHHHHHh-cCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 449 LYLMRVAEKGVQRRVALALAHL-CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 449 v~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
+..|++.+-.|..++|++|+|| +.++..++.+++.|+++.|.+|+.+++..+..-++.+|.||..+.+
T Consensus 536 LQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 536 LQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 8999999999999999999999 6677799999999999999999999999999999999999998763
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.81 E-value=1.2e-18 Score=189.32 Aligned_cols=336 Identities=21% Similarity=0.234 Sum_probs=263.1
Q ss_pred hhhhhcccccchH-HhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHH----------hhhcCCCCCccccCCCccc
Q 005144 62 QVNVLNTTFSWLE-ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALV----------KHLQAPPTSEADRNLKPFE 129 (712)
Q Consensus 62 lv~~L~~~~~~~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~----------~lL~~~~~~~~~~~~~~~~ 129 (712)
-+++|.+.+.-.+ .+.+.+..|-.+|.|+..+ ++....=.+..+++.|= .+++...+ .-.|.++.
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~---~~apa~~~ 312 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP---AIAPASDE 312 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCcccc
Confidence 3445555444322 3678899999999999884 43332222222333322 22222222 11233333
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccC----CccccchhHHHHHHHHHHHHHhhcCCcchhHHH-
Q 005144 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSRAVNSVIRRAADAITNLAHENSSIKTRVR- 204 (712)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 204 (712)
+.+ ..|+.+|.+++.++++|..+.+.|+++.+.+||.-... .+.......+++++..+|.||.+++..++..++
T Consensus 313 H~l-caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQL-CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhh-HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 333 27888999999999999999999999999998864432 222233448999999999999999888887765
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHH-HHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
..|++..+|..|.+...++....+.+|+||++..+.+-+ .+.+.|-+..|+.. ++..........+.+||||+.+..+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 469999999999999999999999999999997776644 45567888888775 4556667889999999999999888
Q ss_pred HHHHHHH-cCChHHHHHhhccC----ChhhHHHHHHHHHHHhc---CCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHH
Q 005144 283 IKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (712)
Q Consensus 283 ~~~~~~~-~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 354 (712)
++..|.. .|.+..|+.+|... .-.+.+.+..+|.|+++ ..+++++.+.+++++..|++.|++....++.++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 8888887 78999999999854 45788889999999774 3567888899999999999999999999999999
Q ss_pred HHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcc
Q 005144 355 FALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 401 (712)
Q Consensus 355 ~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 401 (712)
++||||+. +.+++.|+++.|.+++++++..+.+.++.+|+||-.+..
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999998 889999999999999999999999999999999976653
No 20
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=7.8e-19 Score=150.91 Aligned_cols=157 Identities=23% Similarity=0.442 Sum_probs=136.0
Q ss_pred cHhhhcCCCcccEEEEec---CccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCC-
Q 005144 535 GDQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV- 610 (712)
Q Consensus 535 ~~~~~~~~~~~D~~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~- 610 (712)
...++..+.++|+.|.++ ++.+++||+||++||+||+ |.....| ++....+++.++++|...++|+||+.+++
T Consensus 57 tadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 57 TADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccc
Confidence 355788899999999998 5899999999999999997 4333222 34467788999999999999999999885
Q ss_pred -ChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhh
Q 005144 611 -TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 689 (712)
Q Consensus 611 -~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~ 689 (712)
++..+.++.++|++|+++-|+..|+.-+...+.++||+.+|++|+..+...|...|...|+-||.++ ....|.+++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhccHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999998 45569999766
Q ss_pred cHHHHH
Q 005144 690 IIPEIH 695 (712)
Q Consensus 690 ~~~~l~ 695 (712)
.+..++
T Consensus 213 LLYklI 218 (280)
T KOG4591|consen 213 LLYKLI 218 (280)
T ss_pred HHHHHH
Confidence 554443
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-17 Score=157.99 Aligned_cols=423 Identities=17% Similarity=0.149 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHH----hcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHH
Q 005144 77 RAAAKRATHVLAELAKNEEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (712)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~----~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~ 151 (712)
..++..+..+++..+.++-.|..+. ..|.++.|.+...+++. +|-.++.++|+|+| ++.+.|.
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~ 123 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRA 123 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHH
Confidence 3467778888998888765555554 45667777777776655 89999999999999 9999999
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc--CCCHHHHHHHHH
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAG 229 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~ 229 (712)
.+.+.|+-+.++++|+.....+.+ ...+....+.+.|.|...++...+..+.+.|+++.|...+. ..+.......+.
T Consensus 124 a~~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~ 202 (604)
T KOG4500|consen 124 AFFNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLA 202 (604)
T ss_pred HHHhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHh
Confidence 999999999999999765443322 23477788899999999989999999999999999888764 455555555555
Q ss_pred HHHHhhcCChh-cHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc-CCh-
Q 005144 230 ALRTLAFKNDE-NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCS- 305 (712)
Q Consensus 230 ~L~~L~~~~~~-~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~- 305 (712)
...||.+-..+ ......+......+++++.. -+++.+..+...+...+.. +..+-.+.+.|.+..++++++. .+.
T Consensus 203 ~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t 281 (604)
T KOG4500|consen 203 PFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFT 281 (604)
T ss_pred ccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhccccc
Confidence 55555432222 23344456667777777765 3677888888888888754 5677788889999999999976 221
Q ss_pred ------hhHHHHHHHHHHHhcCCcchhhhhhhcC-ChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHH
Q 005144 306 ------ESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVP 373 (712)
Q Consensus 306 ------~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~ 373 (712)
..-..++....-+..++ +....+...+ +++.+.+|+.+.+......+..+++|+++ ..+++.+.+..
T Consensus 282 ~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nk 360 (604)
T KOG4500|consen 282 KKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNK 360 (604)
T ss_pred chHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 22233344444444444 3444444444 89999999999999999999999999999 77889999999
Q ss_pred HHHhhc-----cCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhh-hhHHHHHHHHHHH---------
Q 005144 374 LLKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT-KDCVAKTLKRLEE--------- 438 (712)
Q Consensus 374 L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~-~~~~~~~l~~l~~--------- 438 (712)
|++++. .++-+++..++.+|+|+.....++..+..+|+.+.+....-...+. .--..+++.-+..
T Consensus 361 L~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL 440 (604)
T KOG4500|consen 361 LISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACEL 440 (604)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHH
Confidence 999993 2467899999999999999999999999999888765322211111 1111111111111
Q ss_pred hhhhhhHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCc---ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 439 KIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 439 ~~~~~~~~~Lv~ll~~~~~~-v~~~a~~~L~~l~~~~~---~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
.-....+..|++-.+++|.. |--..-+.+..+..... .-..+.+.||++.++.++...+-..|..|..+|+-++..
T Consensus 441 ~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 441 AKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 11456678888888888654 88888888888866543 445567889999999999999999999999999887764
No 22
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.76 E-value=1.3e-17 Score=163.76 Aligned_cols=161 Identities=28% Similarity=0.458 Sum_probs=145.1
Q ss_pred hhhcCCCcccEEEEecC-----ccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCC
Q 005144 537 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT 611 (712)
Q Consensus 537 ~~~~~~~~~D~~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~ 611 (712)
.+++....+|+.|.+++ .++++||.||+..|++|.+||+++|.+....+|.+|++.+.+|..+++|+|++.+.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~ 186 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA 186 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence 36788899999999973 6899999999999999999999999999888999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHH-HHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhc
Q 005144 612 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYE-LSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI 690 (712)
Q Consensus 612 ~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~-~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~ 690 (712)
.++++.++.+|++|.++.|.+.|..++...+...|.+..+- .|..++.++|.+.|++-|..+|.+....++|.++...
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~- 265 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST- 265 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH-
Confidence 99999999999999999999999999999988777666554 4999999999999999999999999999999998644
Q ss_pred HHHHHHHH
Q 005144 691 IPEIHNYF 698 (712)
Q Consensus 691 ~~~l~~~~ 698 (712)
...+.+.+
T Consensus 266 ~dt~~evl 273 (521)
T KOG2075|consen 266 RDTYEEVL 273 (521)
T ss_pred HHHHHHHH
Confidence 33333333
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=1.6e-16 Score=166.87 Aligned_cols=371 Identities=19% Similarity=0.250 Sum_probs=278.7
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..+++.+.+|.+. ++.++..|+.-+-.++. +.+.+..+.+.|+|+.|+.+|.+... +|+.+
T Consensus 233 ~~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~ 294 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQ 294 (717)
T ss_pred cccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHH
Confidence 3567777788765 66678899999999998 68888899999999999999999988 99999
Q ss_pred HHHHHHHhc-CCh--hhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 005144 136 SAFALGLLA-VKP--EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (712)
Q Consensus 136 a~~~L~~l~-~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (712)
|+++|.||. +.. +++-.+.+.++++.++++|....+. ++++.+..+|+||+. ++..+..++ ...++.|
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS-~D~lK~~ii-~~al~tL 365 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSS-NDALKMLII-TSALSTL 365 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccc-hhHHHHHHH-HHHHHHH
Confidence 999999999 444 4888999999999999999975553 999999999999997 455554443 3445555
Q ss_pred HHhhcC--------------CCHHHHHHHHHHHHHhhcCChhcHHHHHh-CCCHHHHHHhhcC------CCHHHHHHHHH
Q 005144 213 VELLEF--------------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS------EDSAIHYEAVG 271 (712)
Q Consensus 213 ~~lL~~--------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~ll~~------~~~~v~~~a~~ 271 (712)
....-. .+.++...+.++|+|++....+.++.+.+ .|+|..|+..++. .+....++++.
T Consensus 366 t~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvC 445 (717)
T KOG1048|consen 366 TDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVC 445 (717)
T ss_pred HHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 544321 12467889999999999877788888876 6889999988762 35667788999
Q ss_pred HHHHhhcCChh-----HHHHHH------------------------------------------------HcCChHHHHH
Q 005144 272 VIGNLVHSSPN-----IKKEVL------------------------------------------------AAGALQPVIG 298 (712)
Q Consensus 272 ~L~~L~~~~~~-----~~~~~~------------------------------------------------~~~~l~~L~~ 298 (712)
++.||+..-.. ..+... ...++..-+.
T Consensus 446 ilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~ 525 (717)
T KOG1048|consen 446 ILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLL 525 (717)
T ss_pred HHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHH
Confidence 99999743220 000000 0002222233
Q ss_pred hhc-cCChhhHHHHHHHHHHHhcCCcc----hhhhh-hhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHhc
Q 005144 299 LLS-SCCSESQREAALLLGQFAATDSD----CKVHI-VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----AGIAHN 368 (712)
Q Consensus 299 lL~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~ 368 (712)
+|. +.+..+.+.++.+|-|++.+... .+..+ .+..+++.|++++...+..+.+.++.+|.||+. +.++..
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk 605 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK 605 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc
Confidence 333 34678889999999999976532 23333 678899999999999999999999999999998 677778
Q ss_pred CChHHHHHhhccC------ChhHHHHHHHHHHhcc-cCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh
Q 005144 369 GGLVPLLKLLDSK------NGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 441 (712)
Q Consensus 369 ~~i~~L~~ll~~~------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (712)
++++.|++.|... ++++...++.+|.|+. .+..+...+.+.++++.|
T Consensus 606 ~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL-------------------------- 659 (717)
T KOG1048|consen 606 YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL-------------------------- 659 (717)
T ss_pred chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH--------------------------
Confidence 9999999999432 3789999999999996 578888899888877664
Q ss_pred hhhHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCCcccchhhccCchH
Q 005144 442 GRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 487 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~ 487 (712)
+.+.++. ++.+..+|...|..|=...+.+..+.+.|.-+
T Consensus 660 -------~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q 699 (717)
T KOG1048|consen 660 -------RLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQ 699 (717)
T ss_pred -------HHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHH
Confidence 4444443 55666777777777766666555555555544
No 24
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.71 E-value=5.1e-17 Score=155.40 Aligned_cols=163 Identities=20% Similarity=0.378 Sum_probs=150.5
Q ss_pred cccccHhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceec----CCCCHHHHHHHHHHHhcC
Q 005144 531 QVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTG 606 (712)
Q Consensus 531 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y~~ 606 (712)
.-|+.+.++..+..+||.+.+-|..++.||.-|. .|+||+.||+|.|+|++...|.+ |.++.++|..++.-+|.+
T Consensus 56 ~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~d 134 (488)
T KOG4682|consen 56 QKYIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRD 134 (488)
T ss_pred HHHHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhh
Confidence 3466788899999999999999999999999998 89999999999999999886665 458999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhc
Q 005144 607 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 686 (712)
Q Consensus 607 ~~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l 686 (712)
++.+..+.+..++.+|.++++++|.+.|.+.|++.+++.+++.+|+.+..|+.+.+++.|.+++..|+..+....-|.++
T Consensus 135 EveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei 214 (488)
T KOG4682|consen 135 EVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEI 214 (488)
T ss_pred heeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877788
Q ss_pred hhhcHHHH
Q 005144 687 IQRIIPEI 694 (712)
Q Consensus 687 ~~~~~~~l 694 (712)
+.+....|
T Consensus 215 ~~~Lm~~l 222 (488)
T KOG4682|consen 215 SINLMKQL 222 (488)
T ss_pred CHHHHHHH
Confidence 76654433
No 25
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=3.2e-17 Score=139.40 Aligned_cols=106 Identities=32% Similarity=0.661 Sum_probs=95.7
Q ss_pred HhhhcCCCcccEEEEec-CccchhhHHHhhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCC-h
Q 005144 536 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L 612 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~ 612 (712)
+.+++.+.++|++|.++ +..+++||.||+++|+||+.+|.++ +++.....|.++++++++|..+++|+|+|.+.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 35778899999999999 8999999999999999999999998 6676667899999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 005144 613 DIAQDLLRAADQYLLEGLKRLCEYTIAQD 641 (712)
Q Consensus 613 ~~~~~l~~~A~~~~~~~l~~~c~~~l~~~ 641 (712)
+++.+++.+|++|+++.|+..|+.+|.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999998763
No 26
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.69 E-value=6.9e-17 Score=167.15 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=145.5
Q ss_pred CCcccEEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc-CCCC-----CChhh
Q 005144 542 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDI 614 (712)
Q Consensus 542 ~~~~D~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~-----~~~~~ 614 (712)
+...|+.|.. +|+.++||+++|++|++||..||..-|-|++.-.+.+..++.+-+..+|+|+|+ ++.. -..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4455777776 678899999999999999999999999999886666666779999999999995 4433 35677
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHH
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 694 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 694 (712)
+.+++..||.|.+.+|+..||..|.+.++..+|..++++|..|++..|+..|++||+.|...+..-....+.+...+..|
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998888888888899999
Q ss_pred HHHHHHhcC
Q 005144 695 HNYFAKALT 703 (712)
Q Consensus 695 ~~~~~~~~~ 703 (712)
-+++++|+.
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 999999986
No 27
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=5.7e-14 Score=132.01 Aligned_cols=309 Identities=17% Similarity=0.248 Sum_probs=254.5
Q ss_pred HhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
.+.-...+++.+|..+... |+ +.+..++..++.+|..... +.++.......+..-| .++.+|+.
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ~ 184 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQL 184 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4555677888888877774 44 4567789999999976554 3388888888888888 88999999
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC---------cchhHHHhcCChHHHHHhhcC-CCHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEF-TDTK 222 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~lL~~-~~~~ 222 (712)
+.+.++++.+...|...... .+.+.+.|+++.+..+++ .....+...|++..|++.+.- -+|.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 99999999999888776553 688889999999986432 123346677889999999975 3688
Q ss_pred HHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC-CH---HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHH
Q 005144 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (712)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 298 (712)
+...++.+|..|+. .++....+.+.|++..|+.++.+. +. ...+.++..|..|+. +++.+..+++.|+++.++.
T Consensus 258 ~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence 89999999999996 677888899999999999999884 33 355788999999975 4678899999999999999
Q ss_pred hhc--cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHHH-----HHHHhcC
Q 005144 299 LLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQ-----AGIAHNG 369 (712)
Q Consensus 299 lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~ 369 (712)
++. ..++.+..+++.++.-++-..+++...+++.|+-...++.|+.. ...+++++++++.|++. ..++-..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 886 45789999999999999998999999999999999999999763 45799999999999998 4556677
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHH
Q 005144 370 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 406 (712)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 406 (712)
|++.|+..-...++.....+-.+|+.|..+...+..+
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHh
Confidence 8999999999999999999999999997766655443
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.68 E-value=1.2e-13 Score=148.11 Aligned_cols=392 Identities=19% Similarity=0.195 Sum_probs=284.8
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (712)
+.+....++.+|..+......... ..+..+.|...|.++++ .||..+++.++++. .+......+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 555677788888888774333322 45667899999999888 99999999999999 5555677778
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
+.+.++.++..+.+.+. ++...|+.+|.+++.. +.....++..+.++.|..++..++..+|..+..++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999988877 9999999999999974 44445677888899999999888889999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhh-----H-
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----Q- 308 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-----~- 308 (712)
+..+++....+.+.|+++.++..++++|.-++.+++.+|..|+. .+...+.+.+.|+++.|..++.+...+- .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98888889999999999999999999999999999999999998 5677889999999999999997542221 1
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----HHH-Hh-cCChHH----HHHh
Q 005144 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-----AGI-AH-NGGLVP----LLKL 377 (712)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-----~~~-~~-~~~i~~----L~~l 377 (712)
-......++++..++.... -.-..++..+..++.+.++..+..|..+++.++. ..+ .. .+.++. +...
T Consensus 267 ~g~~~f~g~la~~~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 2223466667654332221 1113466677777889999999999999999998 233 22 223333 3334
Q ss_pred hccCChhHHHHHHHHHHhcccCcc--hhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH-HHHHHHhh
Q 005144 378 LDSKNGSLQHNAAFALYGLADNED--NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRV 454 (712)
Q Consensus 378 l~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~Lv~ll~~ 454 (712)
..+...+++..++.++.++-...+ ....+. .....+-....++... .++.+++.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-----------------------~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDIL-----------------------SITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-----------------------HHHHHHHHHhcCCchHHHHHHHhcC
Confidence 456678899999999999943222 111111 1111222222333333 78888888
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccchhhcc-CchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 455 AEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 455 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+-|++|..+.+.|..++..+-+...+... |.+.-|+.--..++.+.++.==.++..|++.+
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999887755555544 44444444444455555544444445555443
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.63 E-value=1.7e-13 Score=132.99 Aligned_cols=339 Identities=17% Similarity=0.165 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVD----NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~----~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
.|+..+..++...+.++-.|..+.. .+++..|.+...+++. ++..+++++|+|+|.++.++|..+.+.
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~--------ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT--------EVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc--------cHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 5677777788888855555554444 4445555555544432 999999999999999999999999999
Q ss_pred CChHHHHHhhcC----C---CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhh
Q 005144 207 GGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 207 ~~i~~L~~lL~~----~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~ 277 (712)
|+-..+++.|+. + +.+....+++.|.|...++++.+..+++.|+++.|...+.- .+....+.......|+.
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nll 208 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLL 208 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHH
Confidence 998888777753 2 24677888999999998899999999999999999887754 34555555555555654
Q ss_pred cCChh-HHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHH
Q 005144 278 HSSPN-IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSA 354 (712)
Q Consensus 278 ~~~~~-~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~ 354 (712)
.-..+ ......+....-.+++++... .+++++.+...+...+. ++..+..+.+.|.+..++.+++. ++..-+..+.
T Consensus 209 s~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~ 287 (604)
T KOG4500|consen 209 SFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDML 287 (604)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHH
Confidence 32222 122333455666677777644 56777777788888774 66788889999999999999965 3332233333
Q ss_pred HHHHHHHH------------HHHHhcC-ChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchh
Q 005144 355 FALGRLAQ------------AGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 421 (712)
Q Consensus 355 ~~L~~l~~------------~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~ 421 (712)
..+...+. +.+...+ .+..+..++.+.+...+..+.-+|+|+++++.++..+++.+
T Consensus 288 ~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~----------- 356 (604)
T KOG4500|consen 288 NLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD----------- 356 (604)
T ss_pred HHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH-----------
Confidence 33333333 3344444 67788888899999999999999999999999998888866
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhh-----hhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCC
Q 005144 422 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 496 (712)
Q Consensus 422 ~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~ 496 (712)
++..|++++.. ++..++.+++.+|.|++-+..++..+...|..+.+...+...
T Consensus 357 ----------------------~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 357 ----------------------FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred ----------------------HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhc
Confidence 45556666543 467889999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHhh
Q 005144 497 NPKQQLDGAVALFKL 511 (712)
Q Consensus 497 ~~~~~~~a~~~L~~L 511 (712)
.|.+++.-...+..+
T Consensus 415 ~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 415 SPPVTFKLLGTLRMI 429 (604)
T ss_pred CCcchHHHHHHHHHH
Confidence 999888776665443
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.63 E-value=1.6e-13 Score=147.26 Aligned_cols=360 Identities=20% Similarity=0.195 Sum_probs=275.7
Q ss_pred HHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHH
Q 005144 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (712)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~ 187 (712)
.+...|...+. +....++.+|..+......... ..+..+.|...|.++++ .++..+++
T Consensus 42 ~lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~ 99 (503)
T PF10508_consen 42 VLFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALK 99 (503)
T ss_pred HHHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHH
Confidence 37777776655 6667888889888843333222 44567888888888776 99999999
Q ss_pred HHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHH
Q 005144 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (712)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 267 (712)
.|.++..++......+.+.++++.++.++.+++..+...|+.+|.+++. .+.....+.+.+.+..|..++..++..+|.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~ 178 (503)
T PF10508_consen 100 QLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRC 178 (503)
T ss_pred HHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHH
Confidence 9999998666667778888999999999999999999999999999996 556666777888899999999888899999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC--C
Q 005144 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--P 345 (712)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~ 345 (712)
.+..++.+++..+++....+.+.|+++.++..+.++|.-++..++.++..++. .+.....+.+.|+++.|..++.+ .
T Consensus 179 Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 179 RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999888999999999999997 67888889999999999999954 3
Q ss_pred CH---HH-HHHHHHHHHHHHH---HHHHh--cCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHH-HhhCccccc
Q 005144 346 DV---QL-REMSAFALGRLAQ---AGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQKL 415 (712)
Q Consensus 346 ~~---~v-~~~a~~~L~~l~~---~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~~i~~L 415 (712)
+| .+ .-......++++. ..+.. ...+..+.+++.+.++..+..|..+++.++.+.+.+..+ ...+.-
T Consensus 258 dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~--- 334 (503)
T PF10508_consen 258 DPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA--- 334 (503)
T ss_pred CCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH---
Confidence 33 11 1122244555555 11211 123334555667889999999999999999888887776 332200
Q ss_pred cccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcc----------cchh--hcc
Q 005144 416 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----------RTIF--IDG 483 (712)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~----------~~~l--~~~ 483 (712)
-..++..+-....++..++|..++.+|.++...... ...+ ...
T Consensus 335 -------------------------~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~ 389 (503)
T PF10508_consen 335 -------------------------MKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG 389 (503)
T ss_pred -------------------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC
Confidence 112455555666777888999999999999332221 1111 122
Q ss_pred CchH-HHHHHhcCCCchhhhhhHHHHHhhhcccccCc
Q 005144 484 GGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLS 519 (712)
Q Consensus 484 ~~~~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 519 (712)
+... .+..++..+=+++|..+-..+..|+.++|...
T Consensus 390 ~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 390 SPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred CchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 3344 67888888889999999999999999988654
No 31
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.58 E-value=5.9e-15 Score=120.19 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.7
Q ss_pred cEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHh
Q 005144 546 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 625 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l~~~A~~~ 625 (712)
|+.+.++++.+++||.+|+++|+||+.||.+++.+.....+.+++.++++|+.+++|+|++++.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999888778899999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHH
Q 005144 626 LLEGLKRLCE 635 (712)
Q Consensus 626 ~~~~l~~~c~ 635 (712)
+++.|+..|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.9e-12 Score=127.39 Aligned_cols=394 Identities=16% Similarity=0.147 Sum_probs=299.1
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
....+.++-+.+......+ ....+.|+..|.|++.+...-..++...++..|++.|...+. ++..
T Consensus 258 Lk~e~dr~~kklk~~~~KQ---eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~------------~Ll~ 322 (791)
T KOG1222|consen 258 LKEEIDRLNKKLKTAIRKQ---EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS------------SLLT 322 (791)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch------------HHHH
Confidence 4455666666666654432 335677899999999987777788888999999999999887 8888
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
.....|.+++--.+++..+.+.|.+..|+++....++ +++...+..+.|++. +...+..++..|.+|.+..
T Consensus 323 lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ 393 (791)
T KOG1222|consen 323 LVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLAS 393 (791)
T ss_pred HHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHHHHH
Confidence 9999999999667888899999999999999988877 999999999999998 6667888999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
++.++.. ..-|+..|..++. ++..+..+.....++.+++.+-. .+.+|-...+..-.|++.. ..+.+.+.+.+++
T Consensus 394 ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL 469 (791)
T KOG1222|consen 394 LLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGL 469 (791)
T ss_pred HhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcch
Confidence 9987653 3346788888885 77778888888899999876544 4566666666666788753 5566777788889
Q ss_pred HHHHHhh-ccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH------HHH
Q 005144 294 QPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ------AGI 365 (712)
Q Consensus 294 ~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~------~~~ 365 (712)
..|+..- ...+.-+ ...+.|++.+....+..+++ .+..|...++. .+......+.++++||.. ..+
T Consensus 470 ~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~il 543 (791)
T KOG1222|consen 470 DLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKIL 543 (791)
T ss_pred HHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 8888654 3444432 44688888766555555553 45666666644 555666778888888876 666
Q ss_pred HhcCChHHHHHhhccC--ChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 366 AHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
.+...+|-+-..|... ...++-..+-+++.+++.......+..++
T Consensus 544 q~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~--------------------------------- 590 (791)
T KOG1222|consen 544 QSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK--------------------------------- 590 (791)
T ss_pred hhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc---------------------------------
Confidence 7788888888888553 45677777888888888776666665555
Q ss_pred hHHHHHHHHhhh--hhhHHHHHHHHHHHhcCCCcccchhhccCch-HHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 444 VLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGL-ELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 444 ~~~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~-~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+++.++.+|+.. +.+...+.+..+..+......+..+++.... .-|+.++.+.|.++|+.+-.+|--++.+.
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 456678888776 6677778888888877766666666666554 57889999999999999988888777654
No 33
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=5.6e-13 Score=131.00 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=197.5
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
.++.|.++|.+.+. .+|..++++|+.+... ..++.+..++.+.+. .++..
T Consensus 24 ~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~--------~vR~~ 73 (280)
T PRK09687 24 NDDELFRLLDDHNS------------LKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNP--------IERDI 73 (280)
T ss_pred cHHHHHHHHhCCCH------------HHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCH--------HHHHH
Confidence 47889999988887 8999999999887632 246777788877766 99999
Q ss_pred HHHHHHHHhhcCCcchhHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 005144 185 AADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (712)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 263 (712)
++++|+.+...... ....++.|..+ ++++++.|+..|+.+|++++...... ...++..+...+.++++
T Consensus 74 A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 74 GADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKST 142 (280)
T ss_pred HHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCH
Confidence 99999998642211 12356777777 67788999999999999997422211 12245667788888999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC
Q 005144 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 343 (712)
.||..++++|+.+. ++. .++.|+.+|.+.++.+|..++.+|+.+...+ ...++.|+..+.
T Consensus 143 ~VR~~a~~aLg~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~ 202 (280)
T PRK09687 143 NVRFAVAFALSVIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQ 202 (280)
T ss_pred HHHHHHHHHHhccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhc
Confidence 99999999998873 222 6889999999999999999999999984222 245688999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhh
Q 005144 344 SPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ 423 (712)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~ 423 (712)
+.++.||..|.++|+.+ .+..+++.|++.+.+++ ++..++.+|+++...
T Consensus 203 D~~~~VR~~A~~aLg~~-----~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------------------ 251 (280)
T PRK09687 203 DKNEEIRIEAIIGLALR-----KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK------------------------ 251 (280)
T ss_pred CCChHHHHHHHHHHHcc-----CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------------------
Confidence 99999999999999884 34568899999998766 677888888887642
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHh-hhhhhHHHHHHHHHHH
Q 005144 424 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 469 (712)
Q Consensus 424 ~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~-~~~~~v~~~a~~~L~~ 469 (712)
..++.|..++. ++|+.++..|..+|..
T Consensus 252 -------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 14677888886 6789999999888753
No 34
>PRK09687 putative lyase; Provisional
Probab=99.54 E-value=6.7e-13 Score=130.43 Aligned_cols=253 Identities=17% Similarity=0.094 Sum_probs=194.7
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
++.+++.|.+. +..++..|++.|..+.. ..+++.+..++.+.++ .+|..+++
T Consensus 25 ~~~L~~~L~d~------d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~------------~vR~~A~~ 76 (280)
T PRK09687 25 DDELFRLLDDH------NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP------------IERDIGAD 76 (280)
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH------------HHHHHHHH
Confidence 45666667554 77899999999986653 3356778888888877 99999999
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHH-hcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc
Q 005144 139 ALGLLAVKPEHQQLIVDNGALSHLVNLL-KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (712)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 217 (712)
+|+.|...... ....++.|..++ ++.+. .|+..++.+|++++...... ....++.+...+.
T Consensus 77 aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~--------~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~ 138 (280)
T PRK09687 77 ILSQLGMAKRC-----QDNVFNILNNLALEDKSA--------CVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF 138 (280)
T ss_pred HHHhcCCCccc-----hHHHHHHHHHHHhcCCCH--------HHHHHHHHHHhccccccccc-----chHHHHHHHHHhh
Confidence 99999843221 112467777664 44443 89999999999997533211 1124556778888
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005144 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (712)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 297 (712)
++++.||..++++|+.+.. ...++.|+.+++++++.||..|+.+|+.+...++. .++.|+
T Consensus 139 D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~ 198 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFV 198 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHH
Confidence 8999999999999987652 23689999999999999999999999999433332 567799
Q ss_pred HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHh
Q 005144 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKL 377 (712)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~l 377 (712)
.+|.+.++.+|..|+++|+.+-. ..++|.|++.+.+++ ++..++.+|+++.. ..+++.|.++
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----~~a~p~L~~l 260 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----KTLLPVLDTL 260 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----HhHHHHHHHH
Confidence 99999999999999999998642 256899999998866 56678888888554 4678999999
Q ss_pred hc-cCChhHHHHHHHHHHh
Q 005144 378 LD-SKNGSLQHNAAFALYG 395 (712)
Q Consensus 378 l~-~~~~~v~~~a~~~L~~ 395 (712)
+. +.|..++..+.++|..
T Consensus 261 ~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 261 LYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HhhCCChhHHHHHHHHHhc
Confidence 95 7899999999988753
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.52 E-value=2.6e-12 Score=148.16 Aligned_cols=276 Identities=22% Similarity=0.193 Sum_probs=193.8
Q ss_pred cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
.+.++.|+..|.++++ .||..|+.+|+.+.. .+.++.|...|++.+. .++
T Consensus 620 ~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR 669 (897)
T PRK13800 620 APSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVR 669 (897)
T ss_pred chhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHH
Confidence 4456677777776666 788888888877652 2246777777766655 778
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
..++..|..+....+ ..+.|...|.++++.++..++.+|..+..+ -...++..+.+++
T Consensus 670 ~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d 727 (897)
T PRK13800 670 RAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCC
Confidence 877777777643111 124666777777888888888877766421 1335667778888
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.+|..|+.+|+.+-. .+.|..++.+.++.+|..++.+|..+.... ...++.|..++
T Consensus 728 ~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll 784 (897)
T PRK13800 728 HRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT 784 (897)
T ss_pred HHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh
Confidence 8888888888877521 133566777778888888888888775321 12357777888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhh
Q 005144 343 QSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 422 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~ 422 (712)
++.++.+|..|+.+|.++... ......+...+.+.++.||..|+.+|..+...
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----------------------- 837 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCP----PDDVAAATAALRASAWQVRQGAARALAGAAAD----------------------- 837 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCc----chhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------------------
Confidence 888888888888888775330 11234577777777888888888888766421
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhh
Q 005144 423 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 502 (712)
Q Consensus 423 ~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 502 (712)
..++.|+.+|.++++.||..|+.+|..+.. .....+.|...++++++.||.
T Consensus 838 --------------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 838 --------------------VAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDADVRA 888 (897)
T ss_pred --------------------chHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHHHHH
Confidence 245678999999999999999999999621 123468889999999999999
Q ss_pred hhHHHHH
Q 005144 503 DGAVALF 509 (712)
Q Consensus 503 ~a~~~L~ 509 (712)
.|+.+|.
T Consensus 889 ~A~~aL~ 895 (897)
T PRK13800 889 YARRALA 895 (897)
T ss_pred HHHHHHh
Confidence 9999885
No 36
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.1e-12 Score=125.89 Aligned_cols=319 Identities=17% Similarity=0.201 Sum_probs=237.9
Q ss_pred HHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 56 ~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
...-..+|.+|...++.+ +.+........|..++--.+++..+.+.|++..|++++....+ +++..
T Consensus 299 KMrrkniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~ 364 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKA 364 (791)
T ss_pred HHHHHhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHH
Confidence 334445677777777654 5556777888888888888889999999999999999998888 99999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
.+..+.|++.+...+..++..|.+|.+..+|.+... ...|+..++.++. ++..+..+....+++.+.+.
T Consensus 365 tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 365 TLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred HHHHhhhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHH
Confidence 999999999888899999999999999999987644 2457788888886 66667777777888888776
Q ss_pred hcC-CCHHHHHHHH--------------------------------------HHHHHhhcCChhcHHHHHhCCCHHHHHH
Q 005144 216 LEF-TDTKVQRAAA--------------------------------------GALRTLAFKNDENKNQIVECNALPTLIL 256 (712)
Q Consensus 216 L~~-~~~~v~~~a~--------------------------------------~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 256 (712)
+-+ .+.++-...+ ..++|++.+....+..+++. +.-|..
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fidy--vgdLa~ 511 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDY--VGDLAG 511 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHH--HHHHHH
Confidence 533 2333333333 34444443322233333332 334444
Q ss_pred hhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhhhcC
Q 005144 257 MLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRG 333 (712)
Q Consensus 257 ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 333 (712)
.++. .+.+...+++++++||...+-+..+.+.+.+.+|.+-..|..+ ..++..+...+++.++. +..+...+...+
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~ 590 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAK 590 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccc
Confidence 4443 3566788899999999887778888888899999999999865 46688888888888875 667778888899
Q ss_pred ChHHHHHHhCC--CCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcch
Q 005144 334 AVRPLIEMLQS--PDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 334 ~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
+++.|+++|+. .+.+.......++..+.. ..+.+...-..+++++|+.+.++|+.+-.+|--++.+.+.
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 99999999965 455666666666666665 3344556667799999999999999998888888766543
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=7.7e-12 Score=144.27 Aligned_cols=264 Identities=20% Similarity=0.168 Sum_probs=208.0
Q ss_pred HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
+++.+|..|+..|..+. ..+.++.|..+|.+++. .||..|+.+|..+.....
T Consensus 633 ~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 633 PDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred CCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccC------
Confidence 38889999999999654 24468999999988777 999999999988862211
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
..+.|...|.+.+. .++..++..|..+.. +-...++..|.++++.+|..|+.+|..+
T Consensus 685 ---~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 685 ---PAPALRDHLGSPDP--------VVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred ---chHHHHHHhcCCCH--------HHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 13466777776544 899999988887642 1134678899999999999999999875
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
.. .+.|..++.++++.||..++.+|+.+..... ..++.|..++.+.++.+|..++.+
T Consensus 742 ~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 742 DD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAA 798 (897)
T ss_pred cC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHH
Confidence 31 2456788999999999999999999954321 236788999999999999999999
Q ss_pred HHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
|+++.. +. ...+.++..+.++++.||..|+.+|..+.. ...++.|+.++.++++.||..|+.+|.
T Consensus 799 Lg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 799 LAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA-----DVAVPALVEALTDPHLDVRKAAVLALT 863 (897)
T ss_pred HHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----cchHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 999853 11 123668889999999999999999987543 456799999999999999999999999
Q ss_pred hcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 005144 395 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 469 (712)
Q Consensus 395 ~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~ 469 (712)
.+..++. ..+.|...+++.++.|+..|..+|..
T Consensus 864 ~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 864 RWPGDPA------------------------------------------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ccCCCHH------------------------------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8733222 24457788999999999999999864
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.49 E-value=1e-11 Score=127.61 Aligned_cols=389 Identities=16% Similarity=0.147 Sum_probs=279.4
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (712)
+++....|..-..|++. .++....+++.|++|.++.+++..+.. .+++...+.+++.+. +..+....+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s----------~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGS----------TELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCc----------hhhhhhHHHHHHhHHhhccchHHHH
Confidence 66778889999999887 466667799999999999999887763 267777777888888 777778888
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcc--hhHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--KTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 231 (712)
.+.+.++.|+++|.+.+.. .++...+.++.++...++.. .........++.+..++..+...+...-+...
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999887732 88999999999998654332 22223334555555555535555555666666
Q ss_pred HHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH---HhhcCChhHHHHHH----HcCChH--HHHHhhcc
Q 005144 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG---NLVHSSPNIKKEVL----AAGALQ--PVIGLLSS 302 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~~----~~~~l~--~L~~lL~~ 302 (712)
.+++. .++++....+.|+.+.+.-++...+..+|..|+.+++ ++...++....... +.|+.+ .+..++.+
T Consensus 165 a~~s~-~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 165 AHLSS-TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD 243 (678)
T ss_pred ccccc-cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence 77774 5577777788899998888888878899999999999 88777776444333 345554 45566667
Q ss_pred CChhhHHHHHHHHHHHhcCCcc------------h---------------------------------------hhhhhh
Q 005144 303 CCSESQREAALLLGQFAATDSD------------C---------------------------------------KVHIVQ 331 (712)
Q Consensus 303 ~~~~v~~~a~~~L~~l~~~~~~------------~---------------------------------------~~~l~~ 331 (712)
++...+..++.++.++...+.+ . .....+
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e 323 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHE 323 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhh
Confidence 6666666666666666533200 0 000011
Q ss_pred cCChHHHHHHhC----------------------------------------------------CCCHHHHHHHHHHHHH
Q 005144 332 RGAVRPLIEMLQ----------------------------------------------------SPDVQLREMSAFALGR 359 (712)
Q Consensus 332 ~~~l~~L~~ll~----------------------------------------------------~~~~~v~~~a~~~L~~ 359 (712)
....+.+.+++. ..+...+.+++.++.+
T Consensus 324 ~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s 403 (678)
T KOG1293|consen 324 EATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKS 403 (678)
T ss_pred hhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 111122222211 2345666777777777
Q ss_pred HHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHH
Q 005144 360 LAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 432 (712)
Q Consensus 360 l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 432 (712)
+++ ..+...++..+|+++++.++..|...++++|+|+.. ....+..|.+.|+|+
T Consensus 404 ~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId------------------- 464 (678)
T KOG1293|consen 404 FSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID------------------- 464 (678)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH-------------------
Confidence 777 335556788899999999999999999999999954 466777788777655
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcc--cchhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 433 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 433 l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
.+..++.+.++.++..+.++|.++....+. +..+...=+...|..+.+++++.||+.+-..|.|
T Consensus 465 --------------~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 465 --------------ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred --------------HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 478889999999999999999999877663 3333444456788899999999999999999999
Q ss_pred hhccc
Q 005144 511 LANKA 515 (712)
Q Consensus 511 L~~~~ 515 (712)
|.-+.
T Consensus 531 l~c~~ 535 (678)
T KOG1293|consen 531 LTCNS 535 (678)
T ss_pred hhcCc
Confidence 88653
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=1.3e-11 Score=118.33 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=160.3
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
.+.++..|... .|+.++..++.++++.+..+.++..+.+.|+++.+..+|.++++ .++..|++
T Consensus 14 l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL~ 76 (254)
T PF04826_consen 14 LQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKALN 76 (254)
T ss_pred HHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHHH
Confidence 56666677665 68889999999999999999999999999999999999999888 99999999
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC
Q 005144 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (712)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 218 (712)
+|.|++.+.+++..+-. .++.+++.+.+...+ .+++..+++.|.|++.. ...+..+. +.++.++.+|.+
T Consensus 77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~ln------s~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~ 145 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPLN------SEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSS 145 (254)
T ss_pred HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCC------CHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHc
Confidence 99999988888776543 466666655544321 28889999999999864 33444443 589999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 005144 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~ 278 (712)
++..++..++++|.||+. ++.....+...+++..++.++... +.++...++..+.|+..
T Consensus 146 G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 146 GSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred CChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999996 888888888888999999999875 67889999999999954
No 40
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=4.4e-12 Score=121.50 Aligned_cols=194 Identities=20% Similarity=0.249 Sum_probs=161.8
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 233 (712)
.+.+-++.|+.+|+...+. .+++.++.++.+.+. .+.++..+.+.|+++.+..++.++++.++..|+++|.|
T Consensus 9 l~~~~l~~Ll~lL~~t~dp-------~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDP-------FIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred cCHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 4455688999999876553 899999999999876 88899999999999999999999999999999999999
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHH
Q 005144 234 LAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (712)
++. +.+++..+.. .++.++....+ .+..++..++++|.||+..+. ....+ .+.++.++.+|..++..++.++
T Consensus 81 ls~-~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~v 154 (254)
T PF04826_consen 81 LSV-NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQV 154 (254)
T ss_pred cCC-ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHH
Confidence 995 6677666643 36666664433 378899999999999987643 33333 3478999999999999999999
Q ss_pred HHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Q 005144 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (712)
..+|.|++. ++.....++..+++..++.++.. .+.++...++..+.|+..
T Consensus 155 Lk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 155 LKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999986 67777888888999999999976 467888899999999977
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.35 E-value=3.7e-10 Score=115.31 Aligned_cols=341 Identities=13% Similarity=0.150 Sum_probs=235.9
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc-----CChHHHHHhhcCCCHHHHHHHHHHH
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~lL~~~~~~v~~~a~~~L 231 (712)
..+..++++|...... ++..+.+..+..+...++.....+.+. ....+++.+|..+|.-+...++.+|
T Consensus 53 ~y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 3566777788765553 888888888888887666555555443 4567788899888888999999999
Q ss_pred HHhhcCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC--ChhhH
Q 005144 232 RTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 308 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~ 308 (712)
..+....+.........-.+..+...+++. +...+..++.+|..|... +..+..+.+.++++.|+.+|+.. +..+.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999753333211111111334455556553 467777888999998765 67788888888999999999853 56899
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH------------HHHHhcCChHHHH
Q 005144 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ------------AGIAHNGGLVPLL 375 (712)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~------------~~~~~~~~i~~L~ 375 (712)
.+++.+++-++.. ++......+.++++.++++++. ....+.+-++.+|.|+.. ..++..|.++ ++
T Consensus 205 Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l 282 (429)
T cd00256 205 YQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TL 282 (429)
T ss_pred HHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HH
Confidence 9999999999864 4455566678999999999965 667888899999999998 2234444444 45
Q ss_pred Hhhcc---CChhHHHHHH-------HHHHhcccCcchhHHHHhhCccccccccchhh-hhhhhHHHHHHHHHHHhhhhhh
Q 005144 376 KLLDS---KNGSLQHNAA-------FALYGLADNEDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKRLEEKIHGRV 444 (712)
Q Consensus 376 ~ll~~---~~~~v~~~a~-------~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~ 444 (712)
+.|.. .|+++....- .-+..++.-++...++. +|-++ +++ +.+..-......++.+ -+..+
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~-sg~L~------WSp~H~se~FW~EN~~kf~~-~~~~l 354 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELR-SGRLH------WSPVHKSEKFWRENADRLNE-KNYEL 354 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh-cCCcc------CCCCCCCchHHHHHHHHHHh-cchHH
Confidence 55532 3555443322 22333344344443332 23221 111 1122233334444433 24678
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 445 LNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 445 ~~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+..|+.+|. +.++.+..-||.=++.++...+ ++.++.+.|+-..+.++++++|++||..|..|+..|.-+.
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 899999995 4488888899999999988655 8888888999999999999999999999999999987554
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.5e-10 Score=120.72 Aligned_cols=377 Identities=20% Similarity=0.250 Sum_probs=245.8
Q ss_pred hHHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHH
Q 005144 76 DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (712)
.+.++..-+.+++.++++ ++ .+ .++++.|.+..+++++ ..|+.|..+|..+...-..+
T Consensus 93 ~~~vr~k~~dviAeia~~~l~e--~W---Pell~~L~q~~~S~~~------------~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLPE--KW---PELLQFLFQSTKSPNP------------SLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred chHHHHHHHHHHHHHHHhcccc--ch---HHHHHHHHHHhcCCCc------------chhHHHHHHHHhhhhhhccc---
Confidence 445777777888887773 33 11 3457788888888887 89999999999998322221
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH-hcCChHHHHHhh----cCCCHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELL----EFTDTKVQRAAA 228 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL----~~~~~~v~~~a~ 228 (712)
..+.++.+..++...-.+.. ..++..+++++..++...+.++.... -...+|.++..+ ..++......++
T Consensus 153 -~~~~~~~l~~lf~q~~~d~s----~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 153 -LQPHLDDLLRLFSQTMTDPS----SPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred -cchhHHHHHHHHHHhccCCc----chHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 11234444444443322111 16899999999888865542222211 124556555544 456777778888
Q ss_pred HHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHH-------------------
Q 005144 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEV------------------- 287 (712)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~------------------- 287 (712)
.+|..+....+........ .++..-..+.++. ++.+|..|+..|..++...+..++..
T Consensus 228 ~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~ 306 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEE 306 (1075)
T ss_pred HHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcc
Confidence 8888888644444333332 2556666666554 67888888888877765433221110
Q ss_pred --------------------------HH-----cC-------ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhh
Q 005144 288 --------------------------LA-----AG-------ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (712)
Q Consensus 288 --------------------------~~-----~~-------~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (712)
++ -| .++.+-.++.+.++.-|+.+..+|+.++.|..+.....
T Consensus 307 ~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 307 DDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred cchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 00 01 23444555567788889999999999998777665553
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhcccCcch
Q 005144 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 330 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
+ ..+++.++..+++++|.||..|+.+++.++. ..-.....++.|+..+.+ .++.++..|+.++.|++.....
T Consensus 387 l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 387 L-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred H-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 3 5688889999999999999999999999998 444445667788888855 5689999999999999754222
Q ss_pred hHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH-HHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhh
Q 005144 403 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 481 (712)
Q Consensus 403 ~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 481 (712)
.++ .+ +=.+++. .+..++.++.+.++..++.+|+..+........-.
T Consensus 466 --~~l-----~p-------------------------YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY 513 (1075)
T KOG2171|consen 466 --SIL-----EP-------------------------YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY 513 (1075)
T ss_pred --HHH-----HH-------------------------HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH
Confidence 111 01 1112344 44455667799999999999999987666555545
Q ss_pred ccCchHHHHHHhcCCC-chhhhhhHHHHHhh
Q 005144 482 DGGGLELLLGLLGSTN-PKQQLDGAVALFKL 511 (712)
Q Consensus 482 ~~~~~~~L~~ll~~~~-~~~~~~a~~~L~~L 511 (712)
-.-.+|.|...+...+ .+.|.....++-++
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 5566889999988755 45555444444433
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=4.7e-11 Score=103.05 Aligned_cols=117 Identities=37% Similarity=0.505 Sum_probs=110.0
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 203 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
+.+.|+++.+++++.++++.++..++++|.+++..++.....+.+.|+++.++.++.++++.++..++++|++++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987788888999999999999999999999999999999999998777
Q ss_pred HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 005144 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (712)
....+.+.|+++.+++++.+.+.++++.+++++.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7788889999999999999999999999999999987
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.30 E-value=6.8e-10 Score=122.70 Aligned_cols=382 Identities=21% Similarity=0.263 Sum_probs=268.5
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
|...++-+--.+..+.. +++.... ++..+.+=|.++++ .+|..|++++++++ .++....
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~-- 114 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP-- 114 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH--
Confidence 55556666666666666 4553333 35677777777766 89999999999998 4444333
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
.++.+.+++.++++ .++..|+.++..+...+++.- ... .++.+..++.++++.++..|+.++..+
T Consensus 115 ---l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 46788889987776 999999999999997666532 222 588999999999999999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
..++.....+. ...++.|..++...++-.+..++..+..++...+..... ...++.+..++.+.++.+..+++.+
T Consensus 180 -~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 180 -KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp -HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHH
Confidence 22333211111 224566666778899999999999999998766554321 4478888899988889999999999
Q ss_pred HHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhh-ccCChhHHHHHHH
Q 005144 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLL-DSKNGSLQHNAAF 391 (712)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~ 391 (712)
+..+... +. .-..+++.|..++.++++.++..++.+|..++. ..... .....+..+ .+.+..++..++.
T Consensus 255 i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 255 IIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp HHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred HHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHH
Confidence 9988642 22 234567999999999999999999999999887 23333 333344455 4889999999999
Q ss_pred HHHhcccCcchhHHHHhhCccccccccch-h-hhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHhhhhhhHHHHHHHH
Q 005144 392 ALYGLADNEDNVADFIRVGGVQKLQDGEF-I-VQATKDCVAKTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRVALA 466 (712)
Q Consensus 392 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~-~-~~~~~~~~~~~l~~l~~~~---~~~~~~~Lv~ll~~~~~~v~~~a~~~ 466 (712)
.|.+++. +++...+++ .|..... . ....+......+..+.... ....+..+++++..++..+...+...
T Consensus 327 lL~~l~~-~~n~~~Il~-----eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 327 LLYKLAN-ESNVKEILD-----ELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINV 400 (526)
T ss_dssp HHHHH---HHHHHHHHH-----HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred HHhhccc-ccchhhHHH-----HHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHH
Confidence 9999985 444444333 1111110 0 1123334444444444443 35678899999998888888888888
Q ss_pred HHHhcCCCcccchhhccCchHHHHHHhcC-CCchhhhhhHHHHHhhhccc
Q 005144 467 LAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 467 L~~l~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.++....+.. ....+..|.+.+.+ +++.++..++|.++..+...
T Consensus 401 i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 401 IRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp HHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 88886544322 12347888888886 77789999999999887764
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=5.6e-11 Score=102.53 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=109.9
Q ss_pred HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc
Q 005144 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (712)
Q Consensus 244 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (712)
.+.+.|+++.++.++.++++.++..++++|++++..++.....+.+.|+++.++.++.++++.++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999888888999999999999999999999999999999999998776
Q ss_pred chhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005144 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 324 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (712)
.....+.+.|+++.+++.+.+.+..+++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77778888999999999999999999999999999986
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.27 E-value=5.7e-10 Score=123.33 Aligned_cols=397 Identities=21% Similarity=0.225 Sum_probs=261.8
Q ss_pred hhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHH
Q 005144 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (712)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (712)
+..+.+.+.+ +|+.++..|+++++++. +++....+ ++.+.+++.++++ .||..|+.++.+
T Consensus 81 ~n~l~kdl~~--~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~------------~VRk~A~~~l~~ 140 (526)
T PF01602_consen 81 INSLQKDLNS--PNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP------------YVRKKAALALLK 140 (526)
T ss_dssp HHHHHHHHCS--SSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH------------HHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch------------HHHHHHHHHHHH
Confidence 3444444433 37789999999999987 44444443 7889999998877 999999999999
Q ss_pred hc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH
Q 005144 143 LA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (712)
Q Consensus 143 l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 221 (712)
+. ..|+.-. .. .++.+.++|.+.+. .++..|+.++..+ ..++.... -.....+..|.+++...++
T Consensus 141 i~~~~p~~~~---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~ 206 (526)
T PF01602_consen 141 IYRKDPDLVE---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDP 206 (526)
T ss_dssp HHHHCHCCHH---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSH
T ss_pred HhccCHHHHH---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccch
Confidence 99 6666522 12 58889999977665 8999999999988 22222111 1112334555566678899
Q ss_pred HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc
Q 005144 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (712)
-.+..++.+|..++...+..... ...++.+..++.+.++.|...++.++..+.... . .-..+++.|..++.
T Consensus 207 ~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 207 WLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLS 277 (526)
T ss_dssp HHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhh
Confidence 99999999999988644444321 346788888888889999999999999986542 2 23447888999999
Q ss_pred cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhc
Q 005144 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLD 379 (712)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~ 379 (712)
+.++.++..++..|..++... ...+. . ....+..+ .+.++.++..++..|.+++. ..+.. .++.|...+.
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~---~~~v~--~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~--Il~eL~~~l~ 349 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSN---PPAVF--N-QSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE--ILDELLKYLS 349 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHC---HHHHG--T-HHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHH
T ss_pred cccchhehhHHHHHHHhhccc---chhhh--h-hhhhhheecCCCChhHHHHHHHHHhhcccccchhh--HHHHHHHHHH
Confidence 989999999999999998644 11122 2 22333344 58899999999999999998 22222 5677888884
Q ss_pred -cCChhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHH--hhhhhhHHHHHHHHhh-
Q 005144 380 -SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--KIHGRVLNHLLYLMRV- 454 (712)
Q Consensus 380 -~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~Lv~ll~~- 454 (712)
..+..++..++..|+.++. .+......++. .+..+.... .....+++.....-+.. ......+..++..+.+
T Consensus 350 ~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~-l~~ll~~~~--~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~ 426 (526)
T PF01602_consen 350 ELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT-LLKLLEISG--DYVSNEIINVIRDLLSNNPELREKILKKLIELLEDI 426 (526)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH-HHHHHHCTG--GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSS
T ss_pred hccchhhhhhHHHHHHHHHhccCchHHHHHHH-HHHhhhhcc--ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHh
Confidence 4588899999999999975 33332222210 111111000 01111222222222211 1245578888888886
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 455 AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 455 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.++.++..++|+++..+...+... .....+..+.+.....++.+|.....++.++....
T Consensus 427 ~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 427 SSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp SSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 478899999999999866443300 11223455556656677789999999999988754
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.3e-09 Score=117.78 Aligned_cols=401 Identities=18% Similarity=0.182 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCC------hhh
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK------PEH 149 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~------~~~ 149 (712)
|.+++.+|-+++-++...+. .++.|..++.....+ ++|..|+-.+.+++.. .+.
T Consensus 17 Dn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p-----------~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 17 DNEVRRQAEEALETLAKTEP---------LLPALAHILATSADP-----------QVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred CchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCCh-----------HHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 44568889998887776533 578899999776553 9999999999998822 333
Q ss_pred HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 005144 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (712)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 229 (712)
+..+ -..|+..+...... .++...+.++..+++..-+. .+ .+.++.|++..+++++..|+.|+.
T Consensus 77 ~~si-----ks~lL~~~~~E~~~-------~vr~k~~dviAeia~~~l~e-~W---Pell~~L~q~~~S~~~~~rE~al~ 140 (1075)
T KOG2171|consen 77 QQSI-----KSSLLEIIQSETEP-------SVRHKLADVIAEIARNDLPE-KW---PELLQFLFQSTKSPNPSLRESALL 140 (1075)
T ss_pred HHHH-----HHHHHHHHHhccch-------HHHHHHHHHHHHHHHhcccc-ch---HHHHHHHHHHhcCCCcchhHHHHH
Confidence 3332 33455555444432 88899999999998743332 11 235566667778899999999999
Q ss_pred HHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHHhh----ccCC
Q 005144 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLL----SSCC 304 (712)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL----~~~~ 304 (712)
+|..+...-...-....+ .+.+.+.+.+.+++..||..++++++.++...+......-. ...+|.++..+ ..++
T Consensus 141 il~s~~~~~~~~~~~~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d 219 (1075)
T KOG2171|consen 141 ILSSLPETFGNTLQPHLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD 219 (1075)
T ss_pred HHHhhhhhhccccchhHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc
Confidence 999998532222221221 24666777777876669999999999998766422222211 23455455444 4567
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHHH------HHH--HhcCChHHH
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ------AGI--AHNGGLVPL 374 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~------~~~--~~~~~i~~L 374 (712)
.+....+..++..++...+......+ ..+++..+...++ -+..+|..|+..|..+++ +.. .-...++.+
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHH
Confidence 77778888888888865555444333 2455555666644 568899999999988887 111 112223444
Q ss_pred HHhhccC--C--------------hhHHHHHHHHHHhcccCcc---hhHHHHhhCccccc-cccchhhhhhh----hHHH
Q 005144 375 LKLLDSK--N--------------GSLQHNAAFALYGLADNED---NVADFIRVGGVQKL-QDGEFIVQATK----DCVA 430 (712)
Q Consensus 375 ~~ll~~~--~--------------~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~i~~L-~~~~~~~~~~~----~~~~ 430 (712)
+.++... + ..-...|..+|-.++.+-. -...+.+ .++.. .+..+..+... ..+.
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~--~l~~~l~S~~w~~R~AaL~Als~i~ 376 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE--ALEAMLQSTEWKERHAALLALSVIA 376 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4444210 0 1134456666666655422 1122222 11111 11111000000 0000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcC-CCchhhhhhHHHH
Q 005144 431 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVAL 508 (712)
Q Consensus 431 ~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L 508 (712)
..+.......-..+++.++..+.+++|.||..|+.+++.++.+-. .-..-...-.++.|+..+.+ .++.++.+|+.++
T Consensus 377 EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al 456 (1075)
T KOG2171|consen 377 EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAAL 456 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHH
Confidence 011111112234578889999999999999999999999988654 11122345566788888887 6668999999999
Q ss_pred Hhhhcccc
Q 005144 509 FKLANKAT 516 (712)
Q Consensus 509 ~~L~~~~~ 516 (712)
.+++....
T Consensus 457 ~nf~E~~~ 464 (1075)
T KOG2171|consen 457 VNFSEECD 464 (1075)
T ss_pred HHHHHhCc
Confidence 99988643
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.2e-10 Score=116.29 Aligned_cols=345 Identities=19% Similarity=0.164 Sum_probs=228.3
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhC----CChHHHHHHHhcccCCccccch
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAV 178 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~----~~l~~L~~lL~~~~~~~~~~~~ 178 (712)
.++|.|..+|.+++. ...+.|..+|.+|| ++++.-+.-... -.+|.++.+.+++++
T Consensus 128 elLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp------- 188 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP------- 188 (885)
T ss_pred hHHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-------
Confidence 468899999999887 68889999999999 665543321111 257778888888876
Q ss_pred hHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh
Q 005144 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll 258 (712)
.++..|+.|+..+...... .-......+++.+..+..+.+++||+.+|.++..|..-.++. -.-.-.++++.++...
T Consensus 189 -kiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t 265 (885)
T KOG2023|consen 189 -KIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT 265 (885)
T ss_pred -hHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc
Confidence 9999999999877642222 112223356778888888899999999999999998532222 1112246778888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHH---cCChHHHHHhhccC--------------------------------
Q 005144 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLLSSC-------------------------------- 303 (712)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~l~~L~~lL~~~-------------------------------- 303 (712)
++.+.+|..+||.....++... .+..+.. ...+|.|++-+..+
T Consensus 266 qd~dE~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 266 QDVDENVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred cCcchhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence 8999999999999999998753 3333332 34566665544211
Q ss_pred ------------------------ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005144 304 ------------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (712)
Q Consensus 304 ------------------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 359 (712)
++.+|+.++.+|.-++..-.+ .+. .-++|.|-+.|.+.+..+|+.+..+|+.
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL-~~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELL-PILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred ccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHH-HHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 144666666666666532111 111 1234666666677888999999999999
Q ss_pred HHH---HHHHhc--CChHHHHHhhccCChhHHHHHHHHHHhcccC--cchhHHHHhhCccccccccchhhhhhhhHHHHH
Q 005144 360 LAQ---AGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 432 (712)
Q Consensus 360 l~~---~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 432 (712)
+++ +.+... ..++.|+.+|.++.+-||.-.||+|...+.. .+....+
T Consensus 420 IAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~-------------------------- 473 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY-------------------------- 473 (885)
T ss_pred HHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh--------------------------
Confidence 999 333322 3578889999999999999999999988753 1111111
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhc---CCCchhhhhhHHHHH
Q 005144 433 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALF 509 (712)
Q Consensus 433 l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~~~~~a~~~L~ 509 (712)
=..++..|++.+-+++..||++||.+++-+-......-.-.-.-.+..|+.... .+|-.+-..|..+|.
T Consensus 474 --------f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlA 545 (885)
T KOG2023|consen 474 --------FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLA 545 (885)
T ss_pred --------hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHH
Confidence 122456677888889999999999999988443322111111122333333222 366667666766665
Q ss_pred h
Q 005144 510 K 510 (712)
Q Consensus 510 ~ 510 (712)
.
T Consensus 546 d 546 (885)
T KOG2023|consen 546 D 546 (885)
T ss_pred H
Confidence 3
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.6e-10 Score=108.22 Aligned_cols=194 Identities=21% Similarity=0.219 Sum_probs=168.0
Q ss_pred hcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-
Q 005144 66 LNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA- 144 (712)
Q Consensus 66 L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~- 144 (712)
....+..++.+.+.+..|+.-|-.++.+=++...++..|+...++..+++++. .+|..|+|+|+.++
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~q 153 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQ 153 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHh
Confidence 33444445567888999999999999998999999999999999999999888 99999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC--CCHH
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTK 222 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~ 222 (712)
++|..+..+++.|+++.|+.++....+. .++..|+.+++.+.+.+++....+...++...|...+.+ .+..
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~ 226 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVK 226 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchH
Confidence 9999999999999999999999966654 888999999999999999999999999999999999998 5677
Q ss_pred HHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (712)
++..++..+..+..........+...+....+..+....+.++++.++.++..+..
T Consensus 227 lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 227 LKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 88999999999998777777766667777777777777788888888887776653
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.21 E-value=2.3e-09 Score=110.68 Aligned_cols=365 Identities=15% Similarity=0.137 Sum_probs=241.5
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
..+.++.++..+... ....+...+.+..+..+.. ..+....+.+++.++.|+.+|.++++. .++
T Consensus 49 k~GAv~~Ll~L~s~e----~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~-----------~~l 113 (678)
T KOG1293|consen 49 KLGAVELLLALLSLE----DGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSL-----------NVL 113 (678)
T ss_pred hhcchHHHHhhcccc----CCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchH-----------hHH
Confidence 444555555444433 1223344555666666665 567778888999999999999988721 799
Q ss_pred HHHHHHHHHhc-CChh--hHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 005144 134 KGSAFALGLLA-VKPE--HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (712)
Q Consensus 134 ~~a~~~L~~l~-~~~~--~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (712)
...++++.++. .++. ..........++.+..++.-+.. .+...-+....++|. .+..+......|+.+
T Consensus 114 e~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk--------~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~e 184 (678)
T KOG1293|consen 114 EKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK--------YISRLDVSRAAHLSS-TKDHQLILCNAGILE 184 (678)
T ss_pred HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh--------hhhhhhhhhhccccc-cchhhheeccccchh
Confidence 99999999998 3322 22223333455555555541222 444445555566665 557777888888888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHH---HhhcCChhcHHH----HHhCCCHH--HHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 005144 211 PLVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQ----IVECNALP--TLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~---~L~~~~~~~~~~----~~~~~~l~--~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (712)
.+.-++......+|.+|+..++ ++...++..... ..+.|+.+ .+..++++++...+..++.++.++...+.
T Consensus 185 kI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~ 264 (678)
T KOG1293|consen 185 KINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSF 264 (678)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccc
Confidence 8888888888899999999999 887766665433 33455555 56677777777777777777766654430
Q ss_pred h------------H---------H------------------------------HHHHHcCChHHHHHhhc---------
Q 005144 282 N------------I---------K------------------------------KEVLAAGALQPVIGLLS--------- 301 (712)
Q Consensus 282 ~------------~---------~------------------------------~~~~~~~~l~~L~~lL~--------- 301 (712)
+ . + ....+...++.+.+++.
T Consensus 265 ~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~ 344 (678)
T KOG1293|consen 265 NYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD 344 (678)
T ss_pred cccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc
Confidence 0 0 0 00001111222222221
Q ss_pred -------------------------------------------cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHH
Q 005144 302 -------------------------------------------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (712)
Q Consensus 302 -------------------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 338 (712)
..+...+..++..+.+++..-..-+.-+-..++++.|
T Consensus 345 ~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~pl 424 (678)
T KOG1293|consen 345 EKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPL 424 (678)
T ss_pred hhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 0123344445555555543222222234456788999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcc
Q 005144 339 IEMLQSPDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 412 (712)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i 412 (712)
++++.+++..+...+.++|+|+.. ..+...||++.+..++.+.+..++..+.|+|+++.-+.+....+.-.
T Consensus 425 vqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~--- 501 (678)
T KOG1293|consen 425 VQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL--- 501 (678)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH---
Confidence 999999999999999999999998 78999999999999999999999999999999997665543332111
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 413 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 413 ~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
..-....++.+..++++.|+.++...|.||..+.
T Consensus 502 ----------------------------~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 502 ----------------------------AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred ----------------------------HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 1113445778889999999999999999997663
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.20 E-value=2e-08 Score=102.77 Aligned_cols=313 Identities=17% Similarity=0.185 Sum_probs=215.5
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhC-----CChHHHHHHHhcccCCccccch
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN-----GALSHLVNLLKRHMDSNCSRAV 178 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~-----~~l~~L~~lL~~~~~~~~~~~~ 178 (712)
.+..+++++.....+ ++.+..+..+..+. .+|.....+.+. ....+++.+|...+.
T Consensus 54 y~~~~l~ll~~~~~~-----------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~------- 115 (429)
T cd00256 54 YVKTFVNLLSQIDKD-----------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ------- 115 (429)
T ss_pred HHHHHHHHHhccCcH-----------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch-------
Confidence 456777788765542 78888888888888 666655555543 466778888876544
Q ss_pred hHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHh
Q 005144 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 257 (712)
-+...++.+|..+....+.........-..+-+...+.++ +...+..++.+|..|.. .+..+..+.+.++++.|+.+
T Consensus 116 -~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~ 193 (429)
T cd00256 116 -FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKL 193 (429)
T ss_pred -hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHH
Confidence 7888899999888754333211111111233455555543 36677778889999885 67888888888899999999
Q ss_pred hcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCc------chhhh
Q 005144 258 LRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS------DCKVH 328 (712)
Q Consensus 258 l~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~------~~~~~ 328 (712)
++.. +..++..++-+++-|+.. ++........+.++.++++++.. .+.+.+-+..++.|+...+. .....
T Consensus 194 L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 272 (429)
T cd00256 194 LSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ 272 (429)
T ss_pred HhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 9763 458899999999999865 44555556689999999999865 67889999999999986431 23345
Q ss_pred hhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHHH------------------------------------HHHHhcC-
Q 005144 329 IVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ------------------------------------AGIAHNG- 369 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~------------------------------------~~~~~~~- 369 (712)
+++.|+++.+-.+... .|+++.+.....-..|.. ..+.+.+
T Consensus 273 mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~ 352 (429)
T cd00256 273 MVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNY 352 (429)
T ss_pred HHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcch
Confidence 6666775555444432 677765443322222221 1122222
Q ss_pred -ChHHHHHhh-ccCChhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH
Q 005144 370 -GLVPLLKLL-DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 446 (712)
Q Consensus 370 -~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 446 (712)
.+..|+++| .+.++.+..-||.=|+.+.++ |..+..+-+.|+ =.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~---------------------------------K~ 399 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG---------------------------------KQ 399 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCc---------------------------------HH
Confidence 256788888 466788888888888888875 566555555553 23
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 447 HLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 447 ~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
.+..+|.++|++|+.+|+.+++.+.
T Consensus 400 ~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 400 RVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4778999999999999999999873
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.5e-10 Score=116.02 Aligned_cols=313 Identities=19% Similarity=0.168 Sum_probs=214.4
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH----hcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
.+++.|..+|.+++. ...+.|..+|..+|.+....-+.-. -.-.+|.++++.+++++.+|..|+.++.
T Consensus 128 elLp~L~~~L~s~d~--------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN 199 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY--------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN 199 (885)
T ss_pred hHHHHHHHHhcCCcc--------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence 468899999988876 6678899999999976543222100 1246789999999999999999999998
Q ss_pred HhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHH
Q 005144 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (712)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 312 (712)
............-++ ..++.+..+..+++++||+..|.++.-|....++.. .---.+++..++..-++.+.++..+||
T Consensus 200 q~i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 200 QFIIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred heeecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHH
Confidence 877533322222222 367888888899999999999999999976544421 111145677777888888999999999
Q ss_pred HHHHHHhcCCcchhhhhhh--cCChHHHHHHhCCC---------------------------------------------
Q 005144 313 LLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSP--------------------------------------------- 345 (712)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~--~~~l~~L~~ll~~~--------------------------------------------- 345 (712)
..+..++.. +.++..+.. ...+|.|++-+.-+
T Consensus 278 EFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd 356 (885)
T KOG2023|consen 278 EFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD 356 (885)
T ss_pred HHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence 999999863 444443332 35666666554210
Q ss_pred -----------CHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCc
Q 005144 346 -----------DVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 411 (712)
Q Consensus 346 -----------~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 411 (712)
+..+|+..+.+|.-|+. ..+. ...+|.|-+.|.+.++.+++.++-+++.++..- -.|.
T Consensus 357 dDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-------M~g~ 428 (885)
T KOG2023|consen 357 DDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-------MQGF 428 (885)
T ss_pred ccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-------hhhc
Confidence 02355555555555555 1111 123455556667788999999999999887421 1233
Q ss_pred cccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc---ccchhhccCchHH
Q 005144 412 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLEL 488 (712)
Q Consensus 412 i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~~~~ 488 (712)
++.| +.+++.|+.+|.+..|-||..+|++|...+..-- ..+.+ ...+..
T Consensus 429 ~p~L--------------------------peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ 480 (885)
T KOG2023|consen 429 VPHL--------------------------PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEG 480 (885)
T ss_pred ccch--------------------------HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHH
Confidence 3332 2368899999999999999999999998865322 21221 123344
Q ss_pred HHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 489 LLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 489 L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
|.+.+-++|..||++|+.+...+-.+..
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 5555567999999999999999987653
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.8e-09 Score=110.73 Aligned_cols=245 Identities=18% Similarity=0.214 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHHHHhhc--ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
|+-.+.+|+.-|+.... +++....+--.-.+|.|+.+|+..... ++...|+++|.+++ .-|+-...
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~-----------DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF-----------DIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH-----------HHHHHHHHHHHHHHhhccchhhe
Confidence 66678888888887654 455444444455799999999887653 89999999999999 78888888
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
+++.++||.|+.-|..-... ++.++++.+|-.+++.++. .+.+.|++...+.++.--...+++.|+.+..
T Consensus 250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765543 8899999999999986664 5678899999999998888899999999999
Q ss_pred HhhcCChh-cHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHHhhccC----C
Q 005144 233 TLAFKNDE-NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSC----C 304 (712)
Q Consensus 233 ~L~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~----~ 304 (712)
|+|..-.. .-..+++ .+|.|..+|...+....+.++.++..++. ..++.-+.+...|.+....+++.-. +
T Consensus 320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 99963322 2233333 69999999999888888888888887764 3456667888899999999998743 3
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 343 (712)
..+.......+..++++.+.....+.+.++...|..+|.
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 345556677888888887888888888899898888884
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-07 Score=99.94 Aligned_cols=400 Identities=15% Similarity=0.101 Sum_probs=248.4
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhc--ChhhHHHHHh----------cCCHHHHHhhhcCCCCCccccCCCc
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVE----------GGAVPALVKHLQAPPTSEADRNLKP 127 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~----------~g~i~~L~~lL~~~~~~~~~~~~~~ 127 (712)
+..+..|...+-....+...|..|--.|.|-.. +++......+ .-+-..++..|.++.+
T Consensus 34 ~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep--------- 104 (859)
T KOG1241|consen 34 PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEP--------- 104 (859)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC---------
Confidence 333333333333223344456666666776544 3333222221 1122345666666666
Q ss_pred ccHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh
Q 005144 128 FEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (712)
Q Consensus 128 ~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (712)
.....|+.+++.++ .-|.++ -.+.+..|++...+... ..+.+.++.+|+.+|.+-.+-...-..
T Consensus 105 ---~~~s~Aaq~va~IA~~ElP~n~----wp~li~~lv~nv~~~~~-------~~~k~~slealGyice~i~pevl~~~s 170 (859)
T KOG1241|consen 105 ---RRPSSAAQCVAAIACIELPQNQ----WPELIVTLVSNVGEEQA-------SMVKESSLEALGYICEDIDPEVLEQQS 170 (859)
T ss_pred ---CccchHHHHHHHHHHhhCchhh----CHHHHHHHHHhcccccc-------hHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66777888888888 334332 11234444444444333 157889999999999754332211222
Q ss_pred cCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 206 EGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 206 ~~~i~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
..++..++...+. ++..+|..|+.+|.|-......+ -...-..-++.+.+..-++++.+++..|..+|..+..-.-+
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666654 46789999999999765311111 11122233567777888889999999999999999876555
Q ss_pred HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcc---------------hhhhhh---hcCChHHHHHHhCC
Q 005144 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---------------CKVHIV---QRGAVRPLIEMLQS 344 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---------------~~~~l~---~~~~l~~L~~ll~~ 344 (712)
..+.-+....+..-+.-+.++++++..++....+++|...-+ ....+. -.+++|.|+++|..
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 555555556777778888888999999999999988842111 000111 13678899999843
Q ss_pred -------CCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcccc
Q 005144 345 -------PDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 414 (712)
Q Consensus 345 -------~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 414 (712)
.+.....+|..+|.-+++ ..++. ..++-+-+-+.++++.-+..++.+.+.+-..++....
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L--------- 400 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL--------- 400 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh---------
Confidence 234566677777777776 33333 4444445566788999999999999988665443111
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchhhccCchHHHHHH
Q 005144 415 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGL 492 (712)
Q Consensus 415 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l 492 (712)
..+-.+.++.++.++.++.-.++..++++|+.++..-. .-....-...++.+.+=
T Consensus 401 -----------------------t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 401 -----------------------TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred -----------------------hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 00122367889999998888999999999999976543 11111223334444443
Q ss_pred hcCCCchhhhhhHHHHHhhhcccc
Q 005144 493 LGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 493 l~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
+. .+|.+...++|++..|+.+.+
T Consensus 458 L~-DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 458 LN-DEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hh-hCchHHHHHHHHHHHHHHHHH
Confidence 33 588999999999999998764
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=99.10 E-value=1.5e-07 Score=103.97 Aligned_cols=350 Identities=14% Similarity=0.063 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
|.+.+.-.--.+.+.+. +++..-. ++..+.+=+.++++ .+|..|+++|++|.... ...
T Consensus 81 d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~~~-i~e--- 139 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRVSS-VLE--- 139 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCcHH-HHH---
Confidence 55566666666666666 4554332 25666666666666 89999999998887422 211
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
..++.+.+.+.+.++ -|+..|+.++.++...+++ .+...+.++.|.++|.+.++.|..+|+.+|..+
T Consensus 140 --~l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 140 --YTLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred --HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 135667777776665 9999999999999875554 234567889999999999999999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
...++.... ...+.+..++..+.+-++-.+...+.+|....-.++... ..++..+...|++.++.|...|+.+
T Consensus 207 ~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 207 NDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred HHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 864443221 223346667777766677777777777765432221111 2467778888888899999999999
Q ss_pred HHHHhcCCc-chhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHH
Q 005144 315 LGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAF 391 (712)
Q Consensus 315 L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (712)
+.++....+ +....+. ..+.+.++.+ .+++++++..++..+.-++. ..+.... +..+.-..+ ....++...+.
T Consensus 280 il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~-Dp~yIK~~KLe 355 (746)
T PTZ00429 280 VANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYS-DPPFVKLEKLR 355 (746)
T ss_pred HHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccC-CcHHHHHHHHH
Confidence 999875321 2111111 1233556666 45678999999888877776 2222221 333222223 33458999999
Q ss_pred HHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 392 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 392 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
+|..|+. ++|...++ ..|.....+.+.+++..++++++.++
T Consensus 356 IL~~Lan-e~Nv~~IL--------------------------------------~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 356 LLLKLVT-PSVAPEIL--------------------------------------KELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHHHHcC-cccHHHHH--------------------------------------HHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 9999985 44433332 23555566667778888888888887
Q ss_pred CCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 472 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 472 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
...+. .....+..|.+++..+.. +...++.++.++.++
T Consensus 397 ~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 397 IKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 54332 123446777777765433 333566666666543
No 56
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.06 E-value=8.6e-09 Score=101.67 Aligned_cols=268 Identities=17% Similarity=0.166 Sum_probs=204.2
Q ss_pred HHHhCCCHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhc
Q 005144 244 QIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 320 (712)
Q Consensus 244 ~~~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 320 (712)
.+...|++..|+.++..++. .+|.+|.+.|..+.. .+++..+...| +..++.+.+. ...+..+..+.+|.++..
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 34457889999999999864 569999999999864 45667777766 6666666653 467889999999999999
Q ss_pred CCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhccCChhHHHHHHHHH
Q 005144 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 393 (712)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 393 (712)
++++.+..++..|++..++-+.+..+|.+.+.++.+|+|++. ..+++..+.+-|..+-.+.+.-++..||-++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6788888888898888899999999999999
Q ss_pred HhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Q 005144 394 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 473 (712)
Q Consensus 394 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~ 473 (712)
+.|+.+.+....+.++|.+... +.............+. ....+.-..+.+++|+.+|++..-+.+..++.-++.-+..
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLV-EPlva~~DP~~FARD~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI 409 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALV-EPLVASLDPGRFARDA-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI 409 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhh-hhhhhccCcchhhhhh-hhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence 9999998887777777654322 1111111111111111 1111122345688999999977777676666655554332
Q ss_pred Cc---ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 474 DD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 474 ~~---~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
.. ..+.+-+-|+|+.|.++..+++.--..+|..+|.-+....+
T Consensus 410 Ks~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 410 KSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred HHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 22 45667788999999999999999999999999998887654
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1e-07 Score=100.11 Aligned_cols=432 Identities=17% Similarity=0.151 Sum_probs=257.8
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-h-hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
....++-.+.......+.+..+|..|+.+|.|-..- . ...+..-..=++...++..++++. +++..
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~------------~i~~a 236 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE------------EIQVA 236 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH------------HHHHH
Confidence 334444444555554456667888899988875441 1 111111112235555666666666 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc----------------
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS---------------- 198 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---------------- 198 (712)
|..+|.+|. -.-++-..-........-+.-+++.++ ++..+++...+++|...-+
T Consensus 237 a~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 237 AFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 999999998 333333333333344444555565555 8888888888888852211
Q ss_pred chhHH--HhcCChHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHH
Q 005144 199 IKTRV--RMEGGIPPLVELLEFT-------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269 (712)
Q Consensus 199 ~~~~~--~~~~~i~~L~~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 269 (712)
+.... ...+++|.|+++|... +.....+|..+|.-++. -..+.++. -+++.+-.-+++++-.-|..+
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-HVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-hhHHHHHHhcCCcchhhhhHH
Confidence 01100 1125678888888542 24466666666665553 11122222 245555556778888899999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhh-hhhcCChHHHHHHhCCCCHH
Q 005144 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPLIEMLQSPDVQ 348 (712)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~ 348 (712)
+.+++.+-.+.+..+..-+-.++++.++.++.+++--++..++|+++.++...++.+.. ......++.++..|++ .|.
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePr 463 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPR 463 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-Cch
Confidence 99999998876666666667889999999999988889999999999999766644332 2234556666676654 789
Q ss_pred HHHHHHHHHHHHHH---HHHHhc-------CChHHHHHhh-c---c---CChhHHHHHHHHHHhcccC-cchhHHHHhhC
Q 005144 349 LREMSAFALGRLAQ---AGIAHN-------GGLVPLLKLL-D---S---KNGSLQHNAAFALYGLADN-EDNVADFIRVG 410 (712)
Q Consensus 349 v~~~a~~~L~~l~~---~~~~~~-------~~i~~L~~ll-~---~---~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~ 410 (712)
+..+++|++.+|+. +...+. ...+.++.-| + . .+..+|..|-.+|..+..+ +.....++..-
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~ 543 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKL 543 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999997 222222 2344444433 2 1 3467899999999988654 33333322211
Q ss_pred cccccc------ccch-------hhhhhhhHHHHHHHHHHHh-------hhhhhHHHHHHHHhhh-hhhHHHHHHHHHHH
Q 005144 411 GVQKLQ------DGEF-------IVQATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVA-EKGVQRRVALALAH 469 (712)
Q Consensus 411 ~i~~L~------~~~~-------~~~~~~~~~~~~l~~l~~~-------~~~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~ 469 (712)
..-.+. +... ........+...+..+..+ ....++..+++++.++ +..+...|..++..
T Consensus 544 ~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~t 623 (859)
T KOG1241|consen 544 TLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVST 623 (859)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 000000 0000 0111122222223222222 2567788899999884 55677888888888
Q ss_pred hcCCCcccchhhccCchHHHHHHh-cCCCchhhhhhHHHHHhhhcc
Q 005144 470 LCSPDDQRTIFIDGGGLELLLGLL-GSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 470 l~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++..-.....-.-....|-|..=| +..+-.+-..|...+..|++.
T Consensus 624 l~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 624 LAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 766544333322333345554444 334445666666777777664
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=98.98 E-value=3e-07 Score=101.75 Aligned_cols=347 Identities=16% Similarity=0.129 Sum_probs=230.7
Q ss_pred hHHHHHHHHH-HHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHH
Q 005144 76 DRAAAKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (712)
+...+..+++ .+...+.+.+... +.+.+++++.+.+. +++..+.-.+.+.+ .+|+....
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~------------elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDL------------ELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCH------------HHHHHHHHHHHHHcccChHHHHH-
Confidence 3344566666 4555555544432 35677788887766 89999988999998 57765322
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 233 (712)
++..+.+=+.+.++ .++..|+++++++.. +.. ..-.++.+.+.+.+.++-||+.|+.++..
T Consensus 106 ----aINtl~KDl~d~Np--------~IRaLALRtLs~Ir~--~~i-----~e~l~~~lkk~L~D~~pYVRKtAalai~K 166 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSP--------VVRALAVRTMMCIRV--SSV-----LEYTLEPLRRAVADPDPYVRKTAAMGLGK 166 (746)
T ss_pred ----HHHHHHHHcCCCCH--------HHHHHHHHHHHcCCc--HHH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 35556555555544 888888888877653 222 12355678888999999999999999999
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHH
Q 005144 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (712)
+-..+++ .+.+.+.++.|..++.+.++.|..+|+.+|..+...++.. .-...+.+..++..+.+.++-.+.....
T Consensus 167 ly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~ 241 (746)
T PTZ00429 167 LFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILE 241 (746)
T ss_pred HHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 9754442 3345678889999999999999999999999997654432 1223445666777776666555555555
Q ss_pred HHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhc---CChHHHHHhhccCChhHHH
Q 005144 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHN---GGLVPLLKLLDSKNGSLQH 387 (712)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~---~~i~~L~~ll~~~~~~v~~ 387 (712)
+|... .+...... ..++..+...|++.++.|.-.|+.++.++.. ...... ....+++.+ .+++++++.
T Consensus 242 lL~~y---~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqy 315 (746)
T PTZ00429 242 LLAAQ---RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQY 315 (746)
T ss_pred HHHhc---CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHH
Confidence 55442 22221111 3567888888889999999999999988774 111111 122445555 456788888
Q ss_pred HHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 005144 388 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 467 (712)
Q Consensus 388 ~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L 467 (712)
.++..|.-+..... .++.. -+. ...+..+....++...+.+|
T Consensus 316 vaLr~I~~i~~~~P---~lf~~----------------------------------~~~-~Ff~~~~Dp~yIK~~KLeIL 357 (746)
T PTZ00429 316 IVCKNIHALLVIFP---NLLRT----------------------------------NLD-SFYVRYSDPPFVKLEKLRLL 357 (746)
T ss_pred HHHHHHHHHHHHCH---HHHHH----------------------------------HHH-hhhcccCCcHHHHHHHHHHH
Confidence 88877766654221 11110 011 11222333446899999999
Q ss_pred HHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 468 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 468 ~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
..++.......+ +.-|.+...+.+.+++..+..++.+++.+.
T Consensus 358 ~~Lane~Nv~~I------L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 358 LKLVTPSVAPEI------LKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred HHHcCcccHHHH------HHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 999876554443 467778888889999999999999999865
No 59
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-07 Score=92.71 Aligned_cols=182 Identities=24% Similarity=0.291 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~ 259 (712)
+-+..++.-|..++. +-++...+...|++..++.++.+++..+|..|+++|+..+.+||..+..+.+.|+++.|+..+.
T Consensus 98 e~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 98 EDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 556677777777775 5666777889999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChH
Q 005144 260 SE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (712)
Q Consensus 260 ~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (712)
++ +..++..|+.+++.+...++.....+...++...|...+++ .+...++.++..+..+...+......+...++..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 65 45788999999999999999988999999999999999998 5788889999999999987666666666677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 337 PLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.+..+....+.++.+.+..++..+..
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHH
Confidence 78888888889999999888877666
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.9e-07 Score=97.64 Aligned_cols=219 Identities=19% Similarity=0.208 Sum_probs=172.0
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
+...+|.++.+|... .+.++...|+++|.+++. -|.....+++.++||.|+.-|..-..- +|-
T Consensus 209 v~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvA 272 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVA 272 (1051)
T ss_pred HHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHH
Confidence 444556666666554 578899999999999999 488888999999999998877655442 899
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHH
Q 005144 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (712)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~ 211 (712)
++++.+|-.|+ ..+ ..++..|++-..+.+|+...- .+++.|+.+..|.|..- ++.-..+ ...+|.
T Consensus 273 EQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPl 339 (1051)
T KOG0168|consen 273 EQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEALPL 339 (1051)
T ss_pred HHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHHHH
Confidence 99999999999 444 357889999999999987765 88999999999999642 2222223 358999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhc---CChhcHHHHHhCCCHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHH
Q 005144 212 LVELLEFTDTKVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 212 L~~lL~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
|..+|...|....+.++.++..++. +.++..+.+...+++....+++.-. +..+-.-.++.|..++.+.+...
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLF 419 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHH
Confidence 9999999999999999999998874 3344466677889999998888653 33456667788888888878877
Q ss_pred HHHHHcCChHHHHHhhcc
Q 005144 285 KEVLAAGALQPVIGLLSS 302 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~ 302 (712)
......++...|..+|..
T Consensus 420 ~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 420 RTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHhhHHHHHHHHHhc
Confidence 888888888888888864
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.92 E-value=2.8e-07 Score=90.79 Aligned_cols=338 Identities=14% Similarity=0.178 Sum_probs=218.6
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH------hcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR------MEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
+.+++.++.....+ +.....+..+..+-..+......+. ..-..+..+.+|...+.-+...+.+++.
T Consensus 67 v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 67 VKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHH
Confidence 55566666554442 5555555555555443332222111 1233677889999999888887888888
Q ss_pred HhhcCChhcHHHHHhCC-CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc--cCChhhH
Q 005144 233 TLAFKNDENKNQIVECN-ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQ 308 (712)
Q Consensus 233 ~L~~~~~~~~~~~~~~~-~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~ 308 (712)
.++....... ...+.. ....|-..+++ .+++....++++|-.+... ++.+-.+....+...++..+. ..+..++
T Consensus 140 ~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 140 KLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred HHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 8874222111 110000 12334445555 5778888899999999876 667788888888899998883 3478999
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH------------HHHHhcCChHHHH
Q 005144 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ------------AGIAHNGGLVPLL 375 (712)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~------------~~~~~~~~i~~L~ 375 (712)
.+.+.+++-|+. ++...+.+...+.++.|.+++++ ....|.+-++.++.|+.. ..++..+..+ -+
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k-~l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK-TL 295 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH-HH
Confidence 999999999986 55555667778999999999965 567788889999999987 2233344444 44
Q ss_pred Hhhcc---CChhHHHHH-------HHHHHhcccCcchhHHHHhhCccccccccchhhh-hhhhHHHHHHHHHHHhhhhhh
Q 005144 376 KLLDS---KNGSLQHNA-------AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKIHGRV 444 (712)
Q Consensus 376 ~ll~~---~~~~v~~~a-------~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~ 444 (712)
+.|.. .|+++.... -.-...|+.-.+....+. .|.++ +++. .+..-......++.+ -+..+
T Consensus 296 ~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~-sG~L~------WSP~Hk~e~FW~eNa~rlne-nnyel 367 (442)
T KOG2759|consen 296 QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELR-SGRLE------WSPVHKSEKFWRENADRLNE-NNYEL 367 (442)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hCCcC------CCccccccchHHHhHHHHhh-ccHHH
Confidence 44422 244443332 222333333333333322 23221 1111 111112223333322 24457
Q ss_pred HHHHHHHHhhh-hhhHHHHHHHHHHHhcC-CCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 445 LNHLLYLMRVA-EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 445 ~~~Lv~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+..|+.+|+.+ +|.+-.-||.=++.+.+ .+.++..+.+-||-..+.++++++|++|+++|..|+..|..+.
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 89999999988 58888888888998876 4558999999999999999999999999999999999988664
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.9e-06 Score=91.39 Aligned_cols=399 Identities=17% Similarity=0.202 Sum_probs=249.7
Q ss_pred hhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHH
Q 005144 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (712)
Q Consensus 62 lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (712)
++..|...++++ +.-++-.|+.+|++++..+-.|.. .|-+-++|+..++ -+|..|+.+..
T Consensus 108 ltNslknDL~s~--nq~vVglAL~alg~i~s~Emardl------apeVe~Ll~~~~~------------~irKKA~Lca~ 167 (866)
T KOG1062|consen 108 LTNSLKNDLNSS--NQYVVGLALCALGNICSPEMARDL------APEVERLLQHRDP------------YIRKKAALCAV 167 (866)
T ss_pred HHHHHHhhccCC--CeeehHHHHHHhhccCCHHHhHHh------hHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 344555555543 777888999999999875544443 5788889988877 89999999999
Q ss_pred Hhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc---
Q 005144 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--- 217 (712)
Q Consensus 142 ~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--- 217 (712)
++. ..|+.-.. +++...++|.+.+. .|...++..+..+|..+++.-.-+.+ +++.++..|+
T Consensus 168 r~irK~P~l~e~-----f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 168 RFIRKVPDLVEH-----FVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT 232 (866)
T ss_pred HHHHcCchHHHH-----hhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 988 77775433 56777788877665 77777888888888766655444443 6677777664
Q ss_pred ------------CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC------CHHHHHHHHHHHHHhhcC
Q 005144 218 ------------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 218 ------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~~L~~L~~~ 279 (712)
-++|-++...++.|+-|..++++..+.+.+ .|.+.++.. ...+..+++.++..+-.
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~- 306 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRS- 306 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccC-
Confidence 146789999999999999866655555432 344444332 24678888888887732
Q ss_pred ChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005144 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (712)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 359 (712)
+...+.. ++.+|-..|.+.+..+|.-+...|..+...++...+.-. ..++++|+++|+.+++.|...+..
T Consensus 307 ~~~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 307 NSGLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred CchHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2333222 566777778888888888888888888765554333222 578899999999999999998888
Q ss_pred HHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc--CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHH
Q 005144 360 LAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 436 (712)
Q Consensus 360 l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l 436 (712)
|.. ..+. ..+..|+.+|.+.++..+..++.-+..++. .|+++..+-...-+-.. .+.+....... ..+.-+
T Consensus 377 lvn~~Nv~--~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~-aG~~V~~dv~~---nll~LI 450 (866)
T KOG1062|consen 377 LVNESNVR--VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT-AGDFVNDDVVN---NLLRLI 450 (866)
T ss_pred HhccccHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh-cccccchhhHH---HHHHHH
Confidence 776 1111 134568888888899999988888888865 35444432211000000 00110000000 000000
Q ss_pred HHh---hhhhhHHHHHH------HHhhhhhhHHHHHHHHHHHhc---CCC---cccchhhccCchHHHHHHhcC--CCch
Q 005144 437 EEK---IHGRVLNHLLY------LMRVAEKGVQRRVALALAHLC---SPD---DQRTIFIDGGGLELLLGLLGS--TNPK 499 (712)
Q Consensus 437 ~~~---~~~~~~~~Lv~------ll~~~~~~v~~~a~~~L~~l~---~~~---~~~~~l~~~~~~~~L~~ll~~--~~~~ 499 (712)
... .++....+|-. ++.-+.+.+..-|.|+|+.-. -+. +.....-+...+..|..++.+ .+..
T Consensus 451 a~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~ 530 (866)
T KOG1062|consen 451 ANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDST 530 (866)
T ss_pred hcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHH
Confidence 000 00001111111 112234445556667666432 111 122233456778888888875 5567
Q ss_pred hhhhhHHHHHhhhccccc
Q 005144 500 QQLDGAVALFKLANKATT 517 (712)
Q Consensus 500 ~~~~a~~~L~~L~~~~~~ 517 (712)
++.+|..||.+|+....+
T Consensus 531 tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 531 TKGYALTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987654
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=9.9e-07 Score=93.08 Aligned_cols=284 Identities=15% Similarity=0.191 Sum_probs=212.7
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
.|+.|+.-+.+.... +-|+.|++.|..++. .+|..+. ..|+++++..|..+.. +.++...
T Consensus 23 TI~kLcDRvessTL~-----------eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~------D~E~ik~ 82 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLL-----------EDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYM------DPEIIKY 82 (970)
T ss_pred HHHHHHHHHhhccch-----------hhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccC------CHHHHHH
Confidence 467777777666552 678999999988882 3444444 4568999999976654 2499999
Q ss_pred HHHHHHHHhhcCC------cch-----------hHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-cHHHH-
Q 005144 185 AADAITNLAHENS------SIK-----------TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQI- 245 (712)
Q Consensus 185 a~~~L~~l~~~~~------~~~-----------~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~- 245 (712)
++.++.++..+++ ..+ ..+...+.|..++..+...|-.||..+...+.++....+. .+..+
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987553 111 1133457888999999999999999999999999765443 34443
Q ss_pred HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC----ChhhHHHHHHHHHHHhcC
Q 005144 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAAT 321 (712)
Q Consensus 246 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 321 (712)
...-++..++.++.+....+|..++-.|..++.+++...+.+.-.+++..|+.+++.. ..-|...|...+.|+-..
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999888888899999999999753 235778888999999998
Q ss_pred CcchhhhhhhcCChHHHHHHhCC---CCHHH----------HHHHHHHHHHHHH------------HHHHhcCChHHHHH
Q 005144 322 DSDCKVHIVQRGAVRPLIEMLQS---PDVQL----------REMSAFALGRLAQ------------AGIAHNGGLVPLLK 376 (712)
Q Consensus 322 ~~~~~~~l~~~~~l~~L~~ll~~---~~~~v----------~~~a~~~L~~l~~------------~~~~~~~~i~~L~~ 376 (712)
+..+...+.+.+.+|.|.++|.- .+.++ ...++.++..+.. ..+...+++..|+.
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 88999999999999999988842 22111 1123333333333 46777888999999
Q ss_pred hhccC--ChhHHHHHHHHHHhcccC-cchhHHHHh
Q 005144 377 LLDSK--NGSLQHNAAFALYGLADN-EDNVADFIR 408 (712)
Q Consensus 377 ll~~~--~~~v~~~a~~~L~~l~~~-~~~~~~l~~ 408 (712)
++-++ ...|+..+.-++.+..+. ..+...|.+
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 98555 467888888888888764 444444544
No 64
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.91 E-value=8.2e-09 Score=98.80 Aligned_cols=137 Identities=25% Similarity=0.343 Sum_probs=115.8
Q ss_pred ccchhhHHHhhhcCHHHHHhccCCCCCCC-CC---ceecCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhChHh
Q 005144 554 RRFYAHRICLLASSDAFRAMFDGGYREKD-AR---DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEG 629 (712)
Q Consensus 554 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~---~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l~~~A~~~~~~~ 629 (712)
.++|||+.+++ |++||+.||.|+|.|++ +. ...+|.....+++..++|+|+++.++.++-+.+++..|+++.+..
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999998 99999999999999965 22 455667788999999999999999999999999999999997762
Q ss_pred ---HHHHHHHHHHhc---CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcH
Q 005144 630 ---LKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRII 691 (712)
Q Consensus 630 ---l~~~c~~~l~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~ 691 (712)
|+.....-+.+. ++.=++..+++++.....+.|...+-.|++.|+..+...|+|.+......
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~ 447 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSV 447 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhcc
Confidence 566655555543 44456899999999999999999999999999999999999988755543
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.7e-07 Score=94.83 Aligned_cols=329 Identities=15% Similarity=0.177 Sum_probs=238.2
Q ss_pred HHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
.....|+.+++.+.+. .-.+.|+.|+..|..+++ .+|..++.. ++++|++.|+.+.. |+++.
T Consensus 19 s~aETI~kLcDRvess-----TL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~----------D~E~i 80 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESS-----TLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYM----------DPEII 80 (970)
T ss_pred cHHhHHHHHHHHHhhc-----cchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccC----------CHHHH
Confidence 3566789999888887 344568899999987776 466666544 58999999988766 56999
Q ss_pred HHHHHHHHHhc-CCh----------------hhHHHHH-hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhc
Q 005144 134 KGSAFALGLLA-VKP----------------EHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (712)
Q Consensus 134 ~~a~~~L~~l~-~~~----------------~~~~~~~-~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 195 (712)
..++.++.++. .+. .+.+.++ ..+.|..++..+...+- .|+.+++..|.++...
T Consensus 81 k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsalls~ 152 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALLSC 152 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHHhc
Confidence 99999999998 221 1233333 45788889999987766 9999999999999764
Q ss_pred CC-cchhHH-HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC----CHHHHHHH
Q 005144 196 NS-SIKTRV-RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----DSAIHYEA 269 (712)
Q Consensus 196 ~~-~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a 269 (712)
.+ +.+..+ ...-+|..++.+|.+....+|..++-.|..|+.+++..++.++-.+++..|..++..+ ..-|...|
T Consensus 153 r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDC 232 (970)
T KOG0946|consen 153 RPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDC 232 (970)
T ss_pred CCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 33 344433 4457899999999999999999999999999998888777777788999999999764 23588999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc---CC-----hhhH-----HHHHHHHHHHhcCC------cchhhhhh
Q 005144 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---CC-----SESQ-----REAALLLGQFAATD------SDCKVHIV 330 (712)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~---~~-----~~v~-----~~a~~~L~~l~~~~------~~~~~~l~ 330 (712)
+..|-||...+..+...+.+.+.++.|..+|.. ++ |..+ ..+..++..+...+ ..+...+.
T Consensus 233 L~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ 312 (970)
T KOG0946|consen 233 LILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALV 312 (970)
T ss_pred HHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999988852 22 2222 22334555554321 13334667
Q ss_pred hcCChHHHHHHhCCC--CHHHHHHHHHHHHHHHH------HHHHhcC---------ChHH-HHHhh-ccCChhHHHHHHH
Q 005144 331 QRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQ------AGIAHNG---------GLVP-LLKLL-DSKNGSLQHNAAF 391 (712)
Q Consensus 331 ~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~------~~~~~~~---------~i~~-L~~ll-~~~~~~v~~~a~~ 391 (712)
..+++..|..++.++ ..+++..+..++.++.+ ..+.+.. .+-. ++.+. .......|..+..
T Consensus 313 ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~y 392 (970)
T KOG0946|consen 313 SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLY 392 (970)
T ss_pred HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHH
Confidence 788999999998664 46788888888888887 2222211 1112 23333 3445778888888
Q ss_pred HHHhc-ccCcchhHHHHh
Q 005144 392 ALYGL-ADNEDNVADFIR 408 (712)
Q Consensus 392 ~L~~l-~~~~~~~~~l~~ 408 (712)
++..+ ..+.+....++.
T Consensus 393 cf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 393 CFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHhcchhhHHHHHH
Confidence 88666 556666666654
No 66
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=2e-07 Score=92.21 Aligned_cols=271 Identities=22% Similarity=0.242 Sum_probs=197.9
Q ss_pred HHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCcccc
Q 005144 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (712)
Q Consensus 97 ~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 176 (712)
++.+...|++..|++++..++.. ..||..|.+.|-.+.. .++++.+...| +..++.+-+...+.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~e----------t~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~---- 236 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLE----------TSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV---- 236 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH----
Confidence 34566789999999999998872 2679999999988873 24556666555 66666665544432
Q ss_pred chhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHH
Q 005144 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI 255 (712)
Q Consensus 177 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~ 255 (712)
+..+..+.+|.++..++++....++..|++..++..++..+|.+...++-+|+|++.. ....+..+++..+-+-|.
T Consensus 237 ---e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 237 ---ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred ---HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 8889999999999998888888999999999999999999999999999999999863 335567788888888888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCCh
Q 005144 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (712)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l 335 (712)
.+..+.+.-+|.+||-+++.|+.. .+....+..+|.+..+-.++.+-++.. ++....+..+ =-..+-+
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~L 381 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDL 381 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHH
Confidence 888888889999999999999754 666777778887766555555544421 1111000000 0012356
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH--------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 336 RPLIEMLQSPDVQLREMSAFALGRLAQ--------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
+.|+.+|.++.-+.+..++.-++.=+. +.+.+-|++..|-++.++++..-...|..+|.-+..
T Consensus 382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 788888987666655444433332222 667778889999999988887777777777776654
No 67
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.84 E-value=2.4e-06 Score=84.43 Aligned_cols=315 Identities=14% Similarity=0.192 Sum_probs=210.0
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHh-------cCCHHHHHhhhcCCCCCccccCCCcccH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE-------GGAVPALVKHLQAPPTSEADRNLKPFEH 130 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~g~i~~L~~lL~~~~~~~~~~~~~~~~~ 130 (712)
.+..++.++... ...+....++..+..+......|..+.. .-.-+..+++|...+.
T Consensus 66 ~v~~fi~LlS~~-----~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~------------ 128 (442)
T KOG2759|consen 66 YVKTFINLLSHI-----DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT------------ 128 (442)
T ss_pred HHHHHHHHhchh-----hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh------------
Confidence 344444444443 2233455666666666554333333221 2235677888888777
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
-+...+.++++.++ .++..-......-....|-..+++..++ ..+..+++||..+.. .++.|..+....++
T Consensus 129 ~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~ 200 (442)
T KOG2759|consen 129 FIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFVIADGV 200 (442)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHhc-CcchhheeeecCcc
Confidence 67777999999998 3322100000000233444555553332 667788899999987 77778888888999
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCh-----
Q 005144 210 PPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSP----- 281 (712)
Q Consensus 210 ~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~----- 281 (712)
..++..+.+ .+..++...+.+++-|+. ++...+.+...+.++.|..++++. ...|.+-++.++.|+....+
T Consensus 201 ~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~ 279 (442)
T KOG2759|consen 201 SLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETK 279 (442)
T ss_pred hhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHH
Confidence 999988843 467899999999999996 677777777789999999999875 56788899999999998764
Q ss_pred -hHHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHH-------HHhcC--------------Cc---------chhhh
Q 005144 282 -NIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLG-------QFAAT--------------DS---------DCKVH 328 (712)
Q Consensus 282 -~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~-------~l~~~--------------~~---------~~~~~ 328 (712)
+....++..++++.+-.+-+. +|+++....-..-. .+++. +| ++...
T Consensus 280 k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~r 359 (442)
T KOG2759|consen 280 KDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADR 359 (442)
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHH
Confidence 344556666666655444432 25554433222211 12211 11 22223
Q ss_pred hhhc--CChHHHHHHhCC-CCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 329 IVQR--GAVRPLIEMLQS-PDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 329 l~~~--~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
+.+. .++..|+++|+. .+|.+...||.=++...+ ..+...||=+.++++++++|++|+..|+.++-.|..
T Consensus 360 lnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 360 LNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 3332 467888999955 568888888888888888 667778999999999999999999999999987754
No 68
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=1e-06 Score=96.44 Aligned_cols=394 Identities=19% Similarity=0.141 Sum_probs=257.4
Q ss_pred HHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
.+......+...+.+. .++.++..++.-+++++..-.. .....+.++.+.++..+... .||
T Consensus 233 ~vk~elr~~~~~lc~d-----~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sVr 293 (759)
T KOG0211|consen 233 AVKRELRPIVQSLCQD-----DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SVR 293 (759)
T ss_pred HHHHHHHHHHHhhccc-----cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hHH
Confidence 3444455555555554 4677888888888888874222 56678899999999988877 899
Q ss_pred HHHHHHHHHhc---CCh-hhHHHHHhCCChHHHHHHHhcccCCc------------------cc-------------cch
Q 005144 134 KGSAFALGLLA---VKP-EHQQLIVDNGALSHLVNLLKRHMDSN------------------CS-------------RAV 178 (712)
Q Consensus 134 ~~a~~~L~~l~---~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~------------------~~-------------~~~ 178 (712)
..|...+.++. ..+ +. ...+.+.+++...+..-.. .. ...
T Consensus 294 ~~a~~~~~~l~~l~~~~~d~-----~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 294 EAAVESLVSLLDLLDDDDDV-----VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred HHHHHHHHHHHHhcCCchhh-----hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchh
Confidence 99998888887 333 21 1123444444443332100 00 000
Q ss_pred hHHHHHHHHHHHHHhh-cCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHh
Q 005144 179 NSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 257 (712)
++.+...+.-...++. .+......+.....+|.+..+..+.+..++.+.+..+..+.--. .+...+ ....+.++..
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~--~k~~ti-~~llp~~~~~ 445 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL--PKERTI-SELLPLLIGN 445 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC--CcCcCc-cccChhhhhh
Confidence 0111111111111111 11111122233344566666666666777766666665554211 111222 2357778888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHH
Q 005144 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (712)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (712)
+++..+.|+.+..+.+..+-..++...........++.+..+-.+..++++....+.+..++... ...+.....-+.
T Consensus 446 l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~---~~~~~~~~~~~l 522 (759)
T KOG0211|consen 446 LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL---GVEFFDEKLAEL 522 (759)
T ss_pred cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh---hhHHhhHHHHHH
Confidence 99999999999998887776666655566666778888888888888999999999999887522 244555567788
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcccc
Q 005144 338 LIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 414 (712)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 414 (712)
+..++.+....+++.|+..+..++. ..+.....++.++....+++...|...+.++..++.--.
T Consensus 523 ~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g------------- 589 (759)
T KOG0211|consen 523 LRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG------------- 589 (759)
T ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc-------------
Confidence 8888888889999999999999888 345555566777777766678888888888875542110
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhc
Q 005144 415 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 494 (712)
Q Consensus 415 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~ 494 (712)
.+.+...+++.+..+..++.++||.++++.|..+...-+.. ..+....|.+..+..
T Consensus 590 ----------------------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~--~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 590 ----------------------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES--VRDEEVLPLLETLSS 645 (759)
T ss_pred ----------------------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH--HHHHHHHHHHHHhcc
Confidence 02234557888999999999999999999999885544322 224555788888888
Q ss_pred CCCchhhhhhHHHHHhhhcc
Q 005144 495 STNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 495 ~~~~~~~~~a~~~L~~L~~~ 514 (712)
+++.+++.+|..+...+...
T Consensus 646 d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 646 DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred CcccchhHHHHHHHHHHHHH
Confidence 99999999998888766654
No 69
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=6.7e-08 Score=104.42 Aligned_cols=247 Identities=17% Similarity=0.130 Sum_probs=195.7
Q ss_pred HHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 56 ~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
...+|-++.+|.+. -.|..|+..|+...+ ++........-|+.|..++||+++.. ++|.
T Consensus 471 PeQLPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~------------ELrp 530 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR------------ELRP 530 (1387)
T ss_pred hHhcchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH------------hhhh
Confidence 33445555555553 358889999999888 78888888889999999999999988 8998
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.-+.+-.+|. -++.++..+++.++-..+++.|.+...- +.+-+..++.+|..++.+.+..+....+.+.+...+
T Consensus 531 iLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~-----~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCl 605 (1387)
T KOG1517|consen 531 ILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAI-----PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICL 605 (1387)
T ss_pred hHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCC-----CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHH
Confidence 8888888887 7799999999998888888888773221 127778899999999988887888888889999999
Q ss_pred HhhcCC-CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC----hhHHHHH-
Q 005144 214 ELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS----PNIKKEV- 287 (712)
Q Consensus 214 ~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~- 287 (712)
..|.++ .+-++..++-+|+.|-.+.+..+-.=.+.++.+.|..++.++-++||..|+.+|+.+.... ++....+
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~ 685 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVE 685 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhh
Confidence 999885 6889999999999999888888777778889999999999999999999999999998642 2221111
Q ss_pred -----------HHcCCh---HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhh
Q 005144 288 -----------LAAGAL---QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 288 -----------~~~~~l---~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
++.... -.++.+++++++-++.+.+.+|..+..+...+..
T Consensus 686 ~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 686 EEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred hhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 122122 3667777888899999988899988876554433
No 70
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.76 E-value=1.5e-07 Score=95.48 Aligned_cols=220 Identities=20% Similarity=0.242 Sum_probs=157.8
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHH------cCChHHHHHhhccCChhhHHHHHHHHHHHhcCC
Q 005144 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (712)
Q Consensus 251 l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 322 (712)
...++.+++ ..++++.+..+..+..+...++...+.+.. ......++.++..++.-+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 444445544 358899999999999999888876666654 236788888898899999999999999998766
Q ss_pred cchhhhhhhcCChHHHHHHhCC----CCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhh-----c--cCChhHH
Q 005144 323 SDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLL-----D--SKNGSLQ 386 (712)
Q Consensus 323 ~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll-----~--~~~~~v~ 386 (712)
+....... .+.++.+++++.+ ++.+++..++.+|.++.. ..+++.++++.+.+++ . ..+.+++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 55444322 4566778777754 455677899999999988 7788899999999999 2 2347899
Q ss_pred HHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh-hhhHHHHHHH
Q 005144 387 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVAL 465 (712)
Q Consensus 387 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~-~~~v~~~a~~ 465 (712)
..++.++|-|+-+++....+.+.+ +++.|+.+++.. .+.|.+-++.
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~---------------------------------~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKY---------------------------------LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTS---------------------------------HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHhccc---------------------------------hHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999998888877655 466688888776 6788899999
Q ss_pred HHHHhcCCCc--ccchhhccCchHHHHHHhcC--CCchhhhhh
Q 005144 466 ALAHLCSPDD--QRTIFIDGGGLELLLGLLGS--TNPKQQLDG 504 (712)
Q Consensus 466 ~L~~l~~~~~--~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a 504 (712)
+|.|+..... ....++..|+++.+..|... +|+++....
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999988776 77888888888888887775 666665443
No 71
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.73 E-value=6.6e-06 Score=83.88 Aligned_cols=415 Identities=16% Similarity=0.089 Sum_probs=246.4
Q ss_pred chHHhHHHHHHHHHHHHHhhcChhhHHHHHhcC----CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CC
Q 005144 72 WLEADRAAAKRATHVLAELAKNEEVVNWIVEGG----AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK 146 (712)
Q Consensus 72 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g----~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~ 146 (712)
+.+.+..+|..|+.+|.+-... .+.-+...+ .+...++..+.++. +++..|..+|.+|. -.
T Consensus 187 k~et~~avRLaaL~aL~dsl~f--v~~nf~~E~erNy~mqvvceatq~~d~------------e~q~aafgCl~kim~Ly 252 (858)
T COG5215 187 KNETTSAVRLAALKALMDSLMF--VQGNFCYEEERNYFMQVVCEATQGNDE------------ELQHAAFGCLNKIMMLY 252 (858)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHHhhcchhhhchhheeeehhccCCcH------------HHHHHHHHHHHHHHHHH
Confidence 3345777899999998873321 111111122 23444555555555 99999999999988 44
Q ss_pred hhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhH----------------HHhcCChH
Q 005144 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR----------------VRMEGGIP 210 (712)
Q Consensus 147 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~----------------~~~~~~i~ 210 (712)
-.+-....+........+.+++.++ ++..+++...+.+|...-+..-. .....++|
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 4444444444444455566666666 88888888887888532211110 11234788
Q ss_pred HHHHhhcCC-------CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 211 PLVELLEFT-------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 211 ~L~~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
.|+.+|... +..+...|..+|--.+. .....+.+. ++..+-.-+++++-.-|..++.+++.+..+..+.
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 999999652 34566677777766553 112233332 4444455677788888999999999998765554
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-C--CCCHHHHHHHHHHHHHH
Q 005144 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-Q--SPDVQLREMSAFALGRL 360 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~--~~~~~v~~~a~~~L~~l 360 (712)
+..-+-...+|.+...+.++.--++..++|+++.++..-+ ..+-..+-++..++.. . ...|.+..+++|..-|+
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhH
Confidence 4444456789999999998888899999999999985322 2222333333333322 1 25778888999999999
Q ss_pred HH---HHHH-----hcCChHHHHHhh-c-----cCChhHHHHHHHHHHhcccC-cchhHHHHhh----------Cccccc
Q 005144 361 AQ---AGIA-----HNGGLVPLLKLL-D-----SKNGSLQHNAAFALYGLADN-EDNVADFIRV----------GGVQKL 415 (712)
Q Consensus 361 ~~---~~~~-----~~~~i~~L~~ll-~-----~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~----------~~i~~L 415 (712)
+. +... -....+.+++-| + ..+...|..+..+|+.+... ++....+.-. ..+..+
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~ 557 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVL 557 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 1111 123344444444 1 23455666666666666332 2222221110 000000
Q ss_pred cccc--hhhhhhhhHHHHHHHHHHHhh----------hhhhHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCcccchhhc
Q 005144 416 QDGE--FIVQATKDCVAKTLKRLEEKI----------HGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQRTIFID 482 (712)
Q Consensus 416 ~~~~--~~~~~~~~~~~~~l~~l~~~~----------~~~~~~~Lv~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~l~~ 482 (712)
-+.+ .+.....+.....+..+...+ ...+++.++++|.+.++. +-.....++.+++.+-+-+..-..
T Consensus 558 ~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~ 637 (858)
T COG5215 558 GQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA 637 (858)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000011222222333333222 345888899999988554 445566688888776665555566
Q ss_pred cCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 483 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 483 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
...+|-|.+-++..+..+-..|...+..|+...
T Consensus 638 ~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 638 SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 778899998888888888888888888888743
No 72
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=2.9e-07 Score=93.36 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=160.1
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHh------CCChHHHHHHHhcccCCccccc
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD------NGALSHLVNLLKRHMDSNCSRA 177 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~------~~~l~~L~~lL~~~~~~~~~~~ 177 (712)
....++++|+.... ++++....+..+..+. +++.....+.. .....++++++..++.
T Consensus 56 ~~~~~l~lL~~~~~----------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~------ 119 (312)
T PF03224_consen 56 YASLFLNLLNKLSS----------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS------ 119 (312)
T ss_dssp ------HHHHHH-------------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH------
T ss_pred HHHHHHHHHHHccC----------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH------
Confidence 35556666655411 2288999999999999 77766655554 1257788887776654
Q ss_pred hhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHH
Q 005144 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (712)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 253 (712)
-+...++.+|..+....+....... .+.++.++..+.+ ++.+++..++.+|.+|.. .+..+..+.+.++++.
T Consensus 120 --~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~ 195 (312)
T PF03224_consen 120 --FIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSP 195 (312)
T ss_dssp --HHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHH
T ss_pred --HHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHH
Confidence 8899999999999875554433211 4566777777764 445677899999999995 8899999999999999
Q ss_pred HHHhh-----cC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcc-
Q 005144 254 LILML-----RS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSD- 324 (712)
Q Consensus 254 L~~ll-----~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~- 324 (712)
+..++ .+ .+..++.+++.++|.|+.. ++....+...+.++.|+.+++.. .+.+.+-+..++.|+....+.
T Consensus 196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 99999 22 3567899999999999864 77778888888999999999854 688999999999999976554
Q ss_pred hhhhhhhcCChHHHHHHhCC--CCHHHHHHH
Q 005144 325 CKVHIVQRGAVRPLIEMLQS--PDVQLREMS 353 (712)
Q Consensus 325 ~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a 353 (712)
+...++..|+++.+-.+... .|+++.+..
T Consensus 275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 275 NIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 66777878887777766643 678876543
No 73
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1e-06 Score=89.62 Aligned_cols=348 Identities=16% Similarity=0.140 Sum_probs=221.5
Q ss_pred cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
.+++|+.+..+.+.+. .+|..|+..+.|++.................+.++..+.+. .+
T Consensus 83 ~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~--------~V- 141 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ--------NV- 141 (675)
T ss_pred HHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc--------cc-
Confidence 5678999999998888 89999999999999222111111222334455555554443 22
Q ss_pred HHHHHHHHHHhhcCCcchh-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHH-hCCCHHHHHHhhcC
Q 005144 183 RRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRS 260 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~ll~~ 260 (712)
+.++..+-.+..+-..-+. .+.-.+++|.|-+-+...++..|...+.-|..|-. .|+ .+.+. -...++-|..+|.+
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhcC
Confidence 2344444444432111111 34445677777777778899999998888888764 232 22222 24568888999999
Q ss_pred CCHHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHH
Q 005144 261 EDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (712)
+++++|..+=.+++++.. ++|.. +--...++.++.-+.++++.++..|...+..+..-.+.. ....-.|++..
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~ 295 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTA 295 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhh
Confidence 999999777666666542 11211 112457888888899999999999988888887543332 22334677888
Q ss_pred HHHHhCCCCHH-HHHHHHHHHHHHHH----H----HHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHh
Q 005144 338 LIEMLQSPDVQ-LREMSAFALGRLAQ----A----GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 408 (712)
Q Consensus 338 L~~ll~~~~~~-v~~~a~~~L~~l~~----~----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 408 (712)
++.++.++++. +++.+...=..+.. . .+--...++.+.+.+.+...+.+..++.-+..|-....+. .+
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-l~-- 372 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-LL-- 372 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-hh--
Confidence 88888776653 44444332222222 1 1111234666777778888888888888888775433321 11
Q ss_pred hCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHH
Q 005144 409 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 488 (712)
Q Consensus 409 ~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 488 (712)
.....+...|+.-|.+.+.+|...++..+++++.++..... ...+..
T Consensus 373 ------------------------------~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s 419 (675)
T KOG0212|consen 373 ------------------------------VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS 419 (675)
T ss_pred ------------------------------hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence 11344678899999999999999999999999998875422 223344
Q ss_pred HHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 489 LLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 489 L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
|.++...........+.-.+.+|+.
T Consensus 420 LL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 420 LLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 5555555555566677777777665
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.7e-06 Score=86.68 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=181.3
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
.....|++++.|... |+.++..|+.+++.+++ +|.+--.+ -|.+.++|-..+.. =+.
T Consensus 179 lr~~FprL~EkLeDp------Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNN-----------WmL 236 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDP------DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNN-----------WVL 236 (877)
T ss_pred HhhhHHHHHHhccCC------CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCC-----------eeh
Confidence 344556666666665 88889999999999998 66654333 58888888776653 266
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHH--HHhhcCCcchhHHHhcCChH
Q 005144 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT--NLAHENSSIKTRVRMEGGIP 210 (712)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~--~l~~~~~~~~~~~~~~~~i~ 210 (712)
...+..+++|+ -.|..... .+++|.+++.+.... .+.-.++.++. ++..+.+.+...+ .-++.
T Consensus 237 IKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~Am-------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvq 302 (877)
T KOG1059|consen 237 IKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAM-------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQ 302 (877)
T ss_pred HHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHH-------HHHHHHHHHheeehhccCCCCcHHHH--HHHHH
Confidence 67888889998 77876554 578888888776543 45544554442 3333333333222 24677
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.|-.++.++|+.++.-++-+++.+....+... .. --..++.+|.+.++.+|..|+..|..+.. .++...+
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~V---qa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI--- 372 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV---QA--HKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI--- 372 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH---HH--hHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH---
Confidence 88888999999999999999999986444332 22 24678899999999999999999999863 4444443
Q ss_pred CChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhc-CChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHh
Q 005144 291 GALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAH 367 (712)
Q Consensus 291 ~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~ 367 (712)
+..|+.-+... ....|-+.+.-+-.+|+.+.. ..+.+- =.+..|+.+.+-...+.-.....-+.+++- ..-..
T Consensus 373 --Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR 448 (877)
T KOG1059|consen 373 --VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIR 448 (877)
T ss_pred --HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhh
Confidence 34455444433 336666666666666654321 222211 122334444322111111111122222222 00000
Q ss_pred cCChHHHHHhh-----------ccCChhHHHHHHHHHHhcccCcchhHHHHh
Q 005144 368 NGGLVPLLKLL-----------DSKNGSLQHNAAFALYGLADNEDNVADFIR 408 (712)
Q Consensus 368 ~~~i~~L~~ll-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 408 (712)
.-.+..+..++ ++.-.+|..+|+|+++..+..-++....++
T Consensus 449 ~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~le 500 (877)
T KOG1059|consen 449 PFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLE 500 (877)
T ss_pred HhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 11111111121 222468899999999999877666444433
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.65 E-value=3.9e-06 Score=87.93 Aligned_cols=259 Identities=16% Similarity=0.133 Sum_probs=166.4
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhH---HHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ---QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
+..++..|++.++ .+|++|+..++.|+.--..+ ..+...|. .|...|....+ ++.
T Consensus 801 ~stiL~rLnnksa------------~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeyp--------EvL 858 (1172)
T KOG0213|consen 801 CSTILWRLNNKSA------------KVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYP--------EVL 858 (1172)
T ss_pred HHHHHHHhcCCCh------------hHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccH--------HHH
Confidence 4556677777777 99999999999998211111 12222222 24455555444 777
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
...+.++..++....-.+..--..+.+|.|..+|++....++.++...++.++...++....---..+.--|+.+|++.+
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk 938 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK 938 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 76666666665422111111123478999999999999999999999999999755543211111123344778888899
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
.++|+.|..+++.++.. +.-..++..|++-|+..+...|.....+++-++..+.. -.++|.|++--
T Consensus 939 K~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneY 1004 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEY 1004 (1172)
T ss_pred HHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhc
Confidence 99999999999998642 22233555666666554444444444444433321111 13567777766
Q ss_pred CCCCHHHHHHHHHHHHHHHH--HHHH---hcCChHHHHHhhccCChhHHHHHHHHHHhcccCc
Q 005144 343 QSPDVQLREMSAFALGRLAQ--AGIA---HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~--~~~~---~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 400 (712)
..++..|+.-.+.+++.+.+ ..+. -....|.|.+.|.+.+...+..|..++.+++.+.
T Consensus 1005 rtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 77888899888888888777 1111 1234677788888899999999999999998764
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.61 E-value=5.6e-06 Score=89.21 Aligned_cols=403 Identities=21% Similarity=0.193 Sum_probs=212.8
Q ss_pred hHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhh-HH
Q 005144 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQ 151 (712)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~ 151 (712)
.+.|+++++.|+.+.+.+..+-.-....--..+++.+++-|+.. -.|..|.+++..|+..+-. -.
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhccceeeh
Confidence 35688999999999888776311111111123566666666553 5688999999999954432 21
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 231 (712)
.-.-..+++.+...+..... .++...+.++..+.......-..-.-..++..+-.++..++-.+-..|..+|
T Consensus 646 ~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 22223457777777766554 4555555555555432211111111112333444555566777778888888
Q ss_pred HHhhcCChhcHHHHHhCCCHHHHHHhhcCCC---------------------H---------------------HHHHHH
Q 005144 232 RTLAFKNDENKNQIVECNALPTLILMLRSED---------------------S---------------------AIHYEA 269 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~---------------------~---------------------~v~~~a 269 (712)
..+....+... ......+++.++.+++++- + .+.++|
T Consensus 718 ~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa 796 (1233)
T KOG1824|consen 718 TTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQA 796 (1233)
T ss_pred HHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHH
Confidence 88876444332 2222334555555554421 0 011111
Q ss_pred HHHH----HHhhcCChhHHHHHHHcCChHHHH-Hhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC
Q 005144 270 VGVI----GNLVHSSPNIKKEVLAAGALQPVI-GLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (712)
Q Consensus 270 ~~~L----~~L~~~~~~~~~~~~~~~~l~~L~-~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 343 (712)
...+ +.|+...++.. ......+. ++.. ..+..++..|...++.+..+.+. .-..+....+++.++
T Consensus 797 ~~siA~cvA~Lt~~~~~~s-----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQKS-----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHHHHHHHhccccc-----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcC
Confidence 1111 11111111000 00112222 2222 22456667777777777543221 223455668889999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCC---hhHHHHHHHHHHhcccC--cchhHHHHhhCcccccccc
Q 005144 344 SPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDG 418 (712)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~ 418 (712)
+++.+++.+|..||++++...+ ...++.+++.+.++. .-+...-..+|..-+.+ .+... .+...
T Consensus 868 sp~edvksAAs~ALGsl~vgnl--~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~---------~IW~l 936 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNL--PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVE---------KIWAL 936 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCch--HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHH---------HHHHH
Confidence 9999999999999999887000 112333333332221 11111122222222111 00000 01100
Q ss_pred chh-----hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHh
Q 005144 419 EFI-----VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 493 (712)
Q Consensus 419 ~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll 493 (712)
.+. ....+..++..+.++...-....+|.|-..+.++.+..+..++.++..........--.....-+..++.++
T Consensus 937 L~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~ 1016 (1233)
T KOG1824|consen 937 LFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL 1016 (1233)
T ss_pred HHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHH
Confidence 010 001122222334444444466788999999999999999888888877655544222222334466788899
Q ss_pred cCCCchhhhhhHHHHHhhhcccccC
Q 005144 494 GSTNPKQQLDGAVALFKLANKATTL 518 (712)
Q Consensus 494 ~~~~~~~~~~a~~~L~~L~~~~~~~ 518 (712)
.+++.+||+.|..++...+++.++.
T Consensus 1017 ~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred hCCchhHHHHHHHHHHHHHccCHhH
Confidence 9999999999999999988887543
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.56 E-value=1.1e-05 Score=84.84 Aligned_cols=360 Identities=13% Similarity=0.079 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHH----hcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH
Q 005144 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLL----KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (712)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (712)
.||.-++.+|+.++ ..|--. +.+..++..| ..... .....-+.+++.++-..+.......
T Consensus 568 kVR~itAlalsalaeaa~Pygi------e~fDsVlkpLwkgir~hrg--------k~laafLkAigyliplmd~eya~yy 633 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAATPYGI------EQFDSVLKPLWKGIRQHRG--------KELAAFLKAIGYLIPLMDAEYASYY 633 (1172)
T ss_pred hhhhHHHHHHHHHHHhcCCcch------HHHHHHHHHHHHHHHHccC--------hHHHHHHHHHhhccccccHHHHHHh
Confidence 78999999998888 333211 1223333333 22322 4445566777777754444333444
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
...++-.+++=..++|.+.++-++.++..+|. .+...........++.++..+.......-+..-.-+...+ .+.+
T Consensus 634 Trevmlil~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt---v~ia 709 (1172)
T KOG0213|consen 634 TREVMLILIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT---VEIA 709 (1172)
T ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH---HHHH
Confidence 44555667777788999999999999999995 4555556666667777776554321111000001111110 1122
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-chhhhhhhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHH
Q 005144 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLA 361 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~ 361 (712)
+.+.....+..++.=+.+..+.-|+..+.++.++...-. .-...-.+...+..++..++.. ...+--.+..++.|-.
T Consensus 710 ~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 710 AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL 789 (1172)
T ss_pred HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 222223345556666677777777777777766653211 1111112233445555555432 2233333333333311
Q ss_pred HH--HHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchh---HHHHhhCccccccccchhhhhhhhHHHHHH---
Q 005144 362 QA--GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV---ADFIRVGGVQKLQDGEFIVQATKDCVAKTL--- 433 (712)
Q Consensus 362 ~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l--- 433 (712)
.. .-.-...+..++..|+++++.++..|+..+..++.--..+ ..+...|.+-. + ..-....+.+-.++
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLy--E--ylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLY--E--YLGEEYPEVLGSILGAI 865 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHH--H--hcCcccHHHHHHHHHHH
Confidence 10 0000112344566778999999999999999987533332 23333443211 0 01112233333333
Q ss_pred HHHHHhh--------hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc----ccchhhccCchHHHHHHhcCCCchhh
Q 005144 434 KRLEEKI--------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----QRTIFIDGGGLELLLGLLGSTNPKQQ 501 (712)
Q Consensus 434 ~~l~~~~--------~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~l~~~~~~~~L~~ll~~~~~~~~ 501 (712)
..+...+ -.+++|.|.+.|++.+..|+.+++..++.++.... .++.+. +---|+++|.+-+.++|
T Consensus 866 kaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iR 942 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIR 942 (1172)
T ss_pred HHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3332222 56899999999999999999999999999976543 233221 12356788888999999
Q ss_pred hhhHHHHHhhhccc
Q 005144 502 LDGAVALFKLANKA 515 (712)
Q Consensus 502 ~~a~~~L~~L~~~~ 515 (712)
+.|...+..+++-.
T Consensus 943 Raa~nTfG~IakaI 956 (1172)
T KOG0213|consen 943 RAAVNTFGYIAKAI 956 (1172)
T ss_pred HHHHhhhhHHHHhc
Confidence 99999999998854
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.55 E-value=5.5e-05 Score=77.39 Aligned_cols=416 Identities=12% Similarity=0.058 Sum_probs=242.5
Q ss_pred HhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
+|.+++..|..+|..+.. .-.....+.+.-........+++++. +|..+|....+.+| ..-+..-.
T Consensus 233 ~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd------------~va~qavEfWsticeEeid~~~e 300 (858)
T COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND------------EVAIQAVEFWSTICEEEIDGEME 300 (858)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------------HHHHHHHHHHHHHHHHHhhhHHH
Confidence 577889999999998877 44444455555556667788888887 89999999998888 22111100
Q ss_pred HH----------------hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 153 IV----------------DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 153 ~~----------------~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
+. -.+.+|.|+++|....++ ...++|.+-..|..||.-.+....+ .+. ..++.-+-+-+
T Consensus 301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed-~~~DdWn~smaA~sCLqlfaq~~gd---~i~-~pVl~FvEqni 375 (858)
T COG5215 301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED-YYGDDWNPSMAASSCLQLFAQLKGD---KIM-RPVLGFVEQNI 375 (858)
T ss_pred HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC-ccccccchhhhHHHHHHHHHHHhhh---HhH-HHHHHHHHHhc
Confidence 00 123689999999775443 2345678888888888776642111 121 12444455567
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHH
Q 005144 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQP 295 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~ 295 (712)
++++..-+..+..+++.+..+.........-..++|.+.....++.--+...++|+++.++.+- ..+++ .|-++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~ 451 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVL 451 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccH
Confidence 7888889999999999988543333222223457888888888777788999999999997542 33333 444444
Q ss_pred HHHhhc---cCChhhHHHHHHHHHHHhcCCcchh---hhhhhcCChHHHHHHh------CCCCHHHHHHHHHHHHHHHH-
Q 005144 296 VIGLLS---SCCSESQREAALLLGQFAATDSDCK---VHIVQRGAVRPLIEML------QSPDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 296 L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~~l~~- 362 (712)
.++.+. .+++.+...++|...|++.+-++.. ..++ .++.+.++..| ..++...|..+..+|+.|..
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~ 530 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI 530 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence 443332 2467888899999999986433222 1111 12233333333 23566777788888888776
Q ss_pred --HHHHh--cC-----------ChHHHHHhhccC----ChhHHHHHHHHHHhcccC-cc---hhHH-HHhhCcccccccc
Q 005144 363 --AGIAH--NG-----------GLVPLLKLLDSK----NGSLQHNAAFALYGLADN-ED---NVAD-FIRVGGVQKLQDG 418 (712)
Q Consensus 363 --~~~~~--~~-----------~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~-~~---~~~~-l~~~~~i~~L~~~ 418 (712)
..+.+ .| .+..+-+.+.-. ..+++.+-+..|..+.+. +. .... +.+ -.+..|...
T Consensus 531 ~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~-Lf~r~les~ 609 (858)
T COG5215 531 CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLME-LFIRILEST 609 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH-HHHHHHhcc
Confidence 11110 11 122222222111 256677777777666432 11 1111 111 111111111
Q ss_pred --chhhhhhh---hHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHh
Q 005144 419 --EFIVQATK---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 493 (712)
Q Consensus 419 --~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll 493 (712)
.+.....- ......+..--+.+-+.++|.|.+-|...+..+...|.+.++.|+..-..............|++.+
T Consensus 610 ~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 610 KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 00000000 0111111222234567788888888888899999999999999987655444444555678899999
Q ss_pred cCCCc--hhhhhhHHHHHhhhc
Q 005144 494 GSTNP--KQQLDGAVALFKLAN 513 (712)
Q Consensus 494 ~~~~~--~~~~~a~~~L~~L~~ 513 (712)
.++.. +++-....+...++.
T Consensus 690 ss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 690 SSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred cChhhccccchHHHHHHHHHHH
Confidence 87443 454444444444443
No 79
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.55 E-value=3.1e-06 Score=86.86 Aligned_cols=261 Identities=16% Similarity=0.123 Sum_probs=167.9
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhh--HHHHHhCCChHHHHHHHhcccCCccccchhHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (712)
++..++.+|++.++ .+|.+|+...+.|+ --..+ ...+...|. .|..-|....+ ++
T Consensus 605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~yp--------Ev 662 (975)
T COG5181 605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYP--------EV 662 (975)
T ss_pred HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccH--------HH
Confidence 46677888888888 89999999999887 11111 111222221 23333333333 77
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC
Q 005144 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (712)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~ 261 (712)
....+.+++.+...+.-..-+--..|++|.|...|++....+..+....++.++...++....---..+.--|++.|++.
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh
Confidence 77666666666532221111112358999999999999999999999999999976665322111112334577888999
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHH
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l 341 (712)
+.++|++|..+++.++.. +.-..++..|++-|+..+...|.....+++-.+..... -.++|.|+.-
T Consensus 743 nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~d 808 (975)
T COG5181 743 NKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSD 808 (975)
T ss_pred hHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhc
Confidence 999999999999998642 22223556666666655444444444455444421111 2356777766
Q ss_pred hCCCCHHHHHHHHHHHHHHHH---HHH--HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcc
Q 005144 342 LQSPDVQLREMSAFALGRLAQ---AGI--AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 401 (712)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~---~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 401 (712)
-..++..|+.-.+.+++.+.+ +.- --....|.|-+.|.+.++..+..|...+..|+.+..
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 677888899888888887777 111 112345677788888999999999999999987643
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.53 E-value=2e-05 Score=81.61 Aligned_cols=243 Identities=16% Similarity=0.035 Sum_probs=171.2
Q ss_pred CChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 207 GGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 207 ~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
.+++.++..+. .++.+++..++.++.... . ..++..|+..+.+.++.++..+..+|+.+- .+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~---- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE--D---------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--GR---- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC--C---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence 35677888884 566777776665554221 1 113788999999999999999999998872 22
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGI 365 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (712)
+..+.|+.+|.+.++.++..++.+++... ....+.+..+|++.++.++..|+.+|+.+-.
T Consensus 117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR--- 176 (410)
T ss_pred -----HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---
Confidence 25677889999999999988887776622 1235788899999999999999999988543
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
...++.|...+.+.++.|+..|+.++..+.. ++....+..... .............+...-....+
T Consensus 177 --~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~-----------~~g~~~~~~l~~~lal~~~~~a~ 242 (410)
T TIGR02270 177 --RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV-----------LEGGPHRQRLLVLLAVAGGPDAQ 242 (410)
T ss_pred --ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh-----------ccCccHHHHHHHHHHhCCchhHH
Confidence 5667778888999999999999999988754 433333332000 00000000001111111234678
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
..|..+++++. ++..++.+++.+ -....++.|++.+.++. +++.|..++..+.--
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~l----------g~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLV----------GDVEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHc----------CCcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 88888888865 899999999986 34567899999988544 999999999988763
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.50 E-value=5e-05 Score=82.20 Aligned_cols=358 Identities=18% Similarity=0.156 Sum_probs=193.6
Q ss_pred cccHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh
Q 005144 127 PFEHEVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (712)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (712)
..|.+|++.|..+++.+... -++-.. .-...++.+++-|.+. -.+..|+.++..++...-.....-.-
T Consensus 581 d~DqeVkeraIscmgq~i~~fgD~l~~-eL~~~L~il~eRl~nE----------iTRl~AvkAlt~Ia~S~l~i~l~~~l 649 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIANFGDFLGN-ELPRTLPILLERLGNE----------ITRLTAVKALTLIAMSPLDIDLSPVL 649 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhch----------hHHHHHHHHHHHHHhccceeehhhhH
Confidence 34678999999999887721 111110 1112344445444432 56677889999888644433323333
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcH-HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
..+++.+...++.....++...+.++-.|........ ....+ -++..+-.++...+-.+-..|+.+|..++...+..
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~- 727 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS- 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH-
Confidence 4577788888877777778777777777764322221 11222 23444555665666677788888888887654432
Q ss_pred HHHHHcCChHHHHHhhccCCh------------------------------------------hhHHHHHHHHHHHh---
Q 005144 285 KEVLAAGALQPVIGLLSSCCS------------------------------------------ESQREAALLLGQFA--- 319 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~------------------------------------------~v~~~a~~~L~~l~--- 319 (712)
..-....+++.++.+++++-- .+.+++...+..++
T Consensus 728 l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~L 807 (1233)
T KOG1824|consen 728 LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAAL 807 (1233)
T ss_pred HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHH
Confidence 233334456666666655311 11122222221111
Q ss_pred -cCCcchhhhhhhcCChHHHHHHhC--CCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 320 -ATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 320 -~~~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
...++.. ......+..-+. ..+..++.-|.-.|+.+.. ...-..+....+++.+++++.+++.+|..+|+
T Consensus 808 t~~~~~~s-----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 808 TCACPQKS-----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred HHhccccc-----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 1111000 011222222232 2345566666666666665 22222334456888899999999999999999
Q ss_pred hccc-C-cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Q 005144 395 GLAD-N-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 472 (712)
Q Consensus 395 ~l~~-~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~ 472 (712)
+++. + +.....+.+.-.-++- +-....++-++.+.+.....-..+-.+++..|.+-........|--.+.+|+.|+.
T Consensus 883 sl~vgnl~~yLpfil~qi~sqpk-~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l 961 (1233)
T KOG1824|consen 883 SLAVGNLPKYLPFILEQIESQPK-RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL 961 (1233)
T ss_pred hhhcCchHhHHHHHHHHHhcchH-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence 9976 3 3333333332111110 01112222222222211111111223344445555555567778888888888866
Q ss_pred CCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 473 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 473 ~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
.+.. ..+|.|...+.++.+..|.-+..++.-
T Consensus 962 ~epe-------sLlpkL~~~~~S~a~~~rs~vvsavKf 992 (1233)
T KOG1824|consen 962 IEPE-------SLLPKLKLLLRSEASNTRSSVVSAVKF 992 (1233)
T ss_pred CChH-------HHHHHHHHHhcCCCcchhhhhhheeee
Confidence 5332 346999999999999998877776543
No 82
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00024 Score=67.85 Aligned_cols=306 Identities=16% Similarity=0.163 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHhhcCCcc--hh--HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHH-
Q 005144 180 SVIRRAADAITNLAHENSSI--KT--RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL- 254 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~--~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L- 254 (712)
.+...++..+..+..+.+.+ .. .++..+..+.++..+..+|.++...|...+..++. .+.....+.+++....+
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHH
Confidence 66667777777777655422 22 34577899999999999999999999999999996 66666677666655543
Q ss_pred -HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcCCcchhhhhhhc
Q 005144 255 -ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQR 332 (712)
Q Consensus 255 -~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (712)
..+....+.-+|......+..+..-++........+|.+..|..-+.. .+.-++..+......++. ....++.+.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhhcchh
Confidence 344445577788889999999988888888888889999988888876 466677777778888874 45667778889
Q ss_pred CChHHHHHHhCC--CCHHHHHHHHHHHHHHHH---------HHHHhc--CChHHHHHhhccCChhHHHHHHHHHHhcccC
Q 005144 333 GAVRPLIEMLQS--PDVQLREMSAFALGRLAQ---------AGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 333 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~---------~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 399 (712)
|+++.+.+++.. .+|--+-.+.-..+.+.. +.+.+. .+++...+++..+++..+..|+.+++.+.++
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 999999999943 455444333333333322 122111 2344556667889999999999999999988
Q ss_pred cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh-hhhHHHHHHHHHHHhcCC---Cc
Q 005144 400 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSP---DD 475 (712)
Q Consensus 400 ~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~---~~ 475 (712)
.+....+.+.|-. ..++++.-.-+. ...-+..++.+|.+++.. +.
T Consensus 335 teGadlllkTgpp-------------------------------aaehllarafdqnahakqeaaihaLaaIagelrlkp 383 (524)
T KOG4413|consen 335 TEGADLLLKTGPP-------------------------------AAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP 383 (524)
T ss_pred cchhHHHhccCCh-------------------------------HHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh
Confidence 8887777665521 112222222222 112234444455554332 11
Q ss_pred ccc-----------h-------hhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccccC
Q 005144 476 QRT-----------I-------FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 518 (712)
Q Consensus 476 ~~~-----------~-------l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 518 (712)
.+. . -.+.+-...+...+.-+.++++.++...+..++..+|..
T Consensus 384 eqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWal 444 (524)
T KOG4413|consen 384 EQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWAL 444 (524)
T ss_pred hhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHH
Confidence 100 0 011233456667777789999999999999998887754
No 83
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4e-05 Score=79.99 Aligned_cols=343 Identities=15% Similarity=0.117 Sum_probs=206.7
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
.+..+++-+..+.+ .+|+....+|.-+....+.. ......+.+.+++..... .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccH--------HHHhh
Confidence 45667777777766 88888888887666111110 011235566677764433 55666
Q ss_pred HHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhcHHHHHhCC---CHHHHHHhhcC
Q 005144 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECN---ALPTLILMLRS 260 (712)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~-a~~~L~~L~~~~~~~~~~~~~~~---~l~~L~~ll~~ 260 (712)
+.+.+..+..+.. -..+...+++..+...+.+.+...+.. ++.+.-..+..-.. ..+.. .++.++.-+.+
T Consensus 154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----PFEPYIVPILPSILTNFGD 227 (569)
T ss_pred hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----CCCchHHhhHHHHHHHhhc
Confidence 7777777775332 233556678888888888766554443 22222222211111 11222 35555555666
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHH
Q 005144 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ 340 (712)
..+.+|..|..+...+...-+..... -+++.++.-+.+..++.+..++..++.++...+. .....-..++|.+.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSE 302 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHH
Confidence 77889888887776664432222111 1455555555555788999999999988864443 344555789999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcccccccc
Q 005144 341 MLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 418 (712)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~ 418 (712)
.|.+..+++|+++..+|.+++. ..-.-...++.|++.+.+++..+.+. ...|.. ...+..+...
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~-------------ttFV~~V~~p 368 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPEC-LDSLGA-------------TTFVAEVDAP 368 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHH-HHhhcc-------------eeeeeeecch
Confidence 9999999999999999999888 11111234556666665555333221 111111 1111111000
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchh--hccCchHHHHHHhcCC
Q 005144 419 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF--IDGGGLELLLGLLGST 496 (712)
Q Consensus 419 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l--~~~~~~~~L~~ll~~~ 496 (712)
. -.-++|.|-+-+...+.+++..++.++.|++.--+....+ .-...+|-|...+.+.
T Consensus 369 -------------s--------LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 369 -------------S--------LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred -------------h--------HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC
Confidence 0 0113444555566668889999999999998755322222 1234467777777888
Q ss_pred CchhhhhhHHHHHhhhcccc
Q 005144 497 NPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 497 ~~~~~~~a~~~L~~L~~~~~ 516 (712)
.|++|..++.+|+.+-++..
T Consensus 428 ~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLG 447 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 99999999999988887654
No 84
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=5.2e-06 Score=90.36 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 005144 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (712)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (712)
|..|+..|+... -+|..-...+..|+.|.++++|+++.. +++...+.+...+..-++.++..+++.++-..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~Y 558 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYKY 558 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCcee
Confidence 667888999988 778877888889999999999999877 88887888877777668888888888888888
Q ss_pred HHHhhcC-C--CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 212 LVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 212 L~~lL~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
+++.|.. + +++-+..|+.+|..++.+..-.++...+.+.+...+..+.++ .+-+|..++-+|+.|..+.++.+-.-
T Consensus 559 F~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G 638 (1387)
T KOG1517|consen 559 FLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSG 638 (1387)
T ss_pred EEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcc
Confidence 8888876 2 358899999999999987777888888899999889999885 68999999999999998888777666
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCC----cchhhhh------------hhcCCh---HHHHHHhCCCCHH
Q 005144 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI------------VQRGAV---RPLIEMLQSPDVQ 348 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l------------~~~~~l---~~L~~ll~~~~~~ 348 (712)
.+.++-..|+.+|.++-++||..|+++|+.+..+. ++....+ ++.-.. ..++.++++..+-
T Consensus 639 ~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgspl 718 (1387)
T KOG1517|consen 639 RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPL 718 (1387)
T ss_pred ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchH
Confidence 77889999999999999999999999999988642 1111111 111111 3566677888888
Q ss_pred HHHHHHHHHHHHHH
Q 005144 349 LREMSAFALGRLAQ 362 (712)
Q Consensus 349 v~~~a~~~L~~l~~ 362 (712)
++.+...+|..++.
T Consensus 719 vr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 719 VRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888776
No 85
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=7.4e-07 Score=89.95 Aligned_cols=295 Identities=13% Similarity=0.102 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhC
Q 005144 79 AAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (712)
....++..|..++++ ...|..+.+..+.+.|+++|..++- .+.-.+...+.|.. .-...+..++..
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei------------mi~~~~t~~icn~vv~fsnL~~~fL~~ 472 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI------------MIEFPDTIDICNKVVPFSNLGAGFLEK 472 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc------------eeeccchhhhhheeeeccchHHHHHHh
Confidence 345556666777775 6777788889999999999998766 56666777888887 666778889999
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
|++..+++++.+.++ .++.+..|+++++..+.... +-.+....++..++.+..+++..++..++.+|+|++
T Consensus 473 ~iIdvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 473 SIIDVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hHHHHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 999999999987655 89999999999999765543 445677789999999999999999999999999998
Q ss_pred cCChh---cHHHHHhC----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHHhhccC----
Q 005144 236 FKNDE---NKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC---- 303 (712)
Q Consensus 236 ~~~~~---~~~~~~~~----~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~---- 303 (712)
-+... .++..... -..+.|++-+...+|-.....+.+|.+++..++..+..+.+ ...+..+..+|...
T Consensus 545 c~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~ 624 (743)
T COG5369 545 CDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRT 624 (743)
T ss_pred cccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccC
Confidence 53222 22222221 13455666667777766777799999998887776655554 44555555555321
Q ss_pred -------ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHHHH-----------
Q 005144 304 -------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQ----------- 362 (712)
Q Consensus 304 -------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~----------- 362 (712)
...+.........++..........+... |.+=..= ...+.++-.+..|.+.|+..
T Consensus 625 ~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtrat 701 (743)
T COG5369 625 PLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRAT 701 (743)
T ss_pred CCCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhh
Confidence 11121222223333332211211111100 1111111 12344566666666666544
Q ss_pred ----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 363 ----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 363 ----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
..+.+.|.-+.+..+..+.++.+++.+-.+|.++
T Consensus 702 veR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 702 VERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 3455667777777777888899999999999886
No 86
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00012 Score=69.93 Aligned_cols=333 Identities=15% Similarity=0.158 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHhc-CCh--hhHH--HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh
Q 005144 131 EVEKGSAFALGLLA-VKP--EHQQ--LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~--~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (712)
.|+..++..++.|. +.. .... .++..+.++.++..+...++ ++...|...+..++. .+..-..++.
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 78889999999988 333 2322 33477888999999887776 899999999999986 4444444555
Q ss_pred cCChHH--HHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh
Q 005144 206 EGGIPP--LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 206 ~~~i~~--L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
...... +..+....+.-+|..++..+..+.+-++........+|.+..|..-++. .+.-|+.+++.....|+.. +.
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eH 246 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EH 246 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hh
Confidence 554433 4444445566678888888888887778888888889999988887776 6778899999999999765 44
Q ss_pred HHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhhhc-------CChHHHHHHhCCCCHHHHHHH
Q 005144 283 IKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQR-------GAVRPLIEMLQSPDVQLREMS 353 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-------~~l~~L~~ll~~~~~~v~~~a 353 (712)
.++.+.+.|.++.+..++... ++--...+....+.+.. ..+...+.+. -++.....++..++++.++.|
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 567777899999999998743 34333334444444432 1121111111 233444566677899999999
Q ss_pred HHHHHHHHH----HHHHhcCChHHHHHhh----ccCChhHHHHHHHHHHhcccCcchh-HHHHhhCccccccccchhhhh
Q 005144 354 AFALGRLAQ----AGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQA 424 (712)
Q Consensus 354 ~~~L~~l~~----~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~i~~L~~~~~~~~~ 424 (712)
..+++.+.. ..+.-..+.+..-.++ +...-.-+..++.+|.+++..-... .++.+....+.+
T Consensus 325 iDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerl--------- 395 (524)
T KOG4413|consen 325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL--------- 395 (524)
T ss_pred HHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHH---------
Confidence 999999987 3444444444333333 3333455677888888887532111 112221111111
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHH
Q 005144 425 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLEL 488 (712)
Q Consensus 425 ~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~ 488 (712)
.| ...+.....+.-+-++.+...++.+.|+++..+.+.+..++..+= ...++.+.+.+..
T Consensus 396 --rc--lifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefiei 456 (524)
T KOG4413|consen 396 --RC--LIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEI 456 (524)
T ss_pred --HH--HHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceee
Confidence 11 111222222223445667788888899999999999999977665 4444445454443
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=3.5e-05 Score=73.09 Aligned_cols=290 Identities=18% Similarity=0.159 Sum_probs=183.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHH-HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
..++.++.+.+|.++..|..-+.+++.. ..+... .+...++.+.+++++..+ ...|+.+|.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 3578899999999999999999999853 222111 234568889999988776 77899999999875 66677777
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhh------cCChHHHHHHhCC-CCH-HHHHHHHHHHHHH
Q 005144 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQS-PDV-QLREMSAFALGRL 360 (712)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~l~~L~~ll~~-~~~-~v~~~a~~~L~~l 360 (712)
+. ++..++..+.+....+-...+..+.|++..+......+.. .+.+......... .+. .--...+..+.|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 8999999999988889999999999999765544443322 3444444444433 221 1223555677888
Q ss_pred HH-----HHHHhcCChHHHHHhh--ccCChhH-HHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHH
Q 005144 361 AQ-----AGIAHNGGLVPLLKLL--DSKNGSL-QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 432 (712)
Q Consensus 361 ~~-----~~~~~~~~i~~L~~ll--~~~~~~v-~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 432 (712)
++ ..+.+... -+.-.++ .+.+..+ +...+++|.|+|-...+...+.. ..+..|...+. +-.+.+
T Consensus 160 s~~~~gR~l~~~~k~-~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLl-Plagpe----- 231 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKR-FPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILL-PLAGPE----- 231 (353)
T ss_pred hhhhhhhhHhcchhh-hhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHh-hcCCcc-----
Confidence 87 33333332 1122222 3334444 45788999999877666666555 22221110000 000000
Q ss_pred HHHHHHhhhhhhHHHHHHHHh-----hhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcC-CCchhhhhhHH
Q 005144 433 LKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAV 506 (712)
Q Consensus 433 l~~l~~~~~~~~~~~Lv~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~ 506 (712)
.+.+- +-.-+|.=++++- .++|.++..-+.+|..|+....+|+.++..|+-+.+.++-.. +++++++.+-.
T Consensus 232 --e~sEE-dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 232 --ELSEE-DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred --ccCHH-HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHH
Confidence 00000 0011121123333 458899999999999999999999999888888887777654 67777777766
Q ss_pred HHHhhhcccc
Q 005144 507 ALFKLANKAT 516 (712)
Q Consensus 507 ~L~~L~~~~~ 516 (712)
....|....+
T Consensus 309 vvq~Lv~~e~ 318 (353)
T KOG2973|consen 309 VVQMLVRLEP 318 (353)
T ss_pred HHHHHHhccc
Confidence 6666666443
No 88
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=2.7e-05 Score=79.55 Aligned_cols=311 Identities=12% Similarity=0.069 Sum_probs=204.7
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 204 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
.-.+.+++++..+.+++..++..||..+.|++........ ..-..+...+.++..+.+..++.. +..+-.+...-...
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccc
Confidence 5568899999999999999999999999999952222111 112345677788888877766543 34444432210000
Q ss_pred HH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 284 KK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 284 ~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.. .+--.+++|.|-.-+..-++..|......|.-+-+. ++....-.-..+++-|..+|.++++++|..+-.++.++..
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 01 111133455555555556888898888888877543 2222111124677889999999999999988888888776
Q ss_pred ------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhh--hhhhHHHH---
Q 005144 363 ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ--ATKDCVAK--- 431 (712)
Q Consensus 363 ------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~--- 431 (712)
..+.-...++.++.-++++++.++..|+.-|..+..-+...-...-.|.+..+..-..... +.+++...
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 2223345677788888999999999998888777543333222222332222222111111 22223222
Q ss_pred HHHHHHHh-------hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhh
Q 005144 432 TLKRLEEK-------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG 504 (712)
Q Consensus 432 ~l~~l~~~-------~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a 504 (712)
.+..+... --+.+++.+.+.+.+...+.|..++.-+..+-....++-..+.....+.|..-+.+++.++-..+
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 12222111 12467888899999999999999999999998888888777788888999999999999999999
Q ss_pred HHHHHhhhccccc
Q 005144 505 AVALFKLANKATT 517 (712)
Q Consensus 505 ~~~L~~L~~~~~~ 517 (712)
...+..++.+..+
T Consensus 398 L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 398 LSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhcCccc
Confidence 9999999987644
No 89
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0012 Score=70.78 Aligned_cols=245 Identities=18% Similarity=0.200 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (712)
++.++..|+-+...+.. .|+....+ ++...++|.+.+. .|...++..+..+| .+++.-..+
T Consensus 155 ~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~h------------GVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 155 DPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHH------------GVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred CHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCC------------ceeeeHHHHHHHHHhcCHHHHHHH
Confidence 77789999999888887 56665554 6777888887776 68888889999999 767665444
Q ss_pred HhCCChHHHHHHHhcccCCc-------cccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCC------
Q 005144 154 VDNGALSHLVNLLKRHMDSN-------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD------ 220 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~-------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------ 220 (712)
.+ .++.++..|++-.... ..-.++=++..+++.|.-+..+++...+.+.+ .|.+.....+
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~G 290 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAG 290 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccch
Confidence 44 5677777776532111 11223467788899999998888777766553 4444443221
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (712)
..+...+..++..+-. +..-+ .+ ++..|-++|.+.+..+|.-++..|..+...++...+. -=..++++|
T Consensus 291 nAILYE~V~TI~~I~~-~~~Lr-vl----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL 359 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRS-NSGLR-VL----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECL 359 (866)
T ss_pred hHHHHHHHHHHHhccC-CchHH-HH----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHh
Confidence 3566666677665553 22211 11 4677888888888889999999998888776653332 224688899
Q ss_pred ccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
++.|..+++.|...+..+.. ..+...+ +..|+..|.+.+++.+...+.-+..++.
T Consensus 360 ~DpD~SIkrralELs~~lvn--~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVN--ESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhc--cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999988873 4444433 4778888877799999998888888887
No 90
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5.4e-05 Score=80.41 Aligned_cols=303 Identities=17% Similarity=0.123 Sum_probs=202.3
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHH-HHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAAD-AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~ 237 (712)
-.-|..+|++..+ .....|+. ++..++. .... ....|.+++...+.+.++++.+--.|...+..
T Consensus 37 ~~dL~~lLdSnkd--------~~KleAmKRIia~iA~-G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe 101 (968)
T KOG1060|consen 37 HDDLKQLLDSNKD--------SLKLEAMKRIIALIAK-GKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE 101 (968)
T ss_pred hHHHHHHHhcccc--------HHHHHHHHHHHHHHhc-CCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc
Confidence 3457788887766 44444554 5555555 3332 24678999999999999999887777777753
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 005144 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (712)
Q Consensus 238 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (712)
+++-. + =-+..+-+-|+++++.+|..|++++..+-. + ++..=++-.+-+...+..+-+|+.|+.+|..
T Consensus 102 qpdLA--L---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpK 169 (968)
T KOG1060|consen 102 QPDLA--L---LSINTFQKALKDPNQLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPK 169 (968)
T ss_pred CCCce--e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHH
Confidence 33211 1 136778889999999999999999988722 2 2211134445566677889999999999999
Q ss_pred HhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
+-+-+++....+ +..+-.+|.+.++.|...|+.+.-.++- ..-.-.+-...+++++.+-+..=|...+.+|...
T Consensus 170 LYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 170 LYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred HhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 988777766544 4677888899999999999999988887 3333345677889999877777777777777766
Q ss_pred ccCcchhH----H-HHhhCccccccccc------hhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 005144 397 ADNEDNVA----D-FIRVGGVQKLQDGE------FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 465 (712)
Q Consensus 397 ~~~~~~~~----~-l~~~~~i~~L~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~ 465 (712)
|++.-... . ..+.|.-..+.... ....++ ..-+++..-.++.+.++.|..++++
T Consensus 245 AR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D---------------~~lLL~stkpLl~S~n~sVVmA~aq 309 (968)
T KOG1060|consen 245 ARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPD---------------LKLLLQSTKPLLQSRNPSVVMAVAQ 309 (968)
T ss_pred HHhcCCCccccccccccCcccccccccccccCCCcccCcc---------------HHHHHHhccHHHhcCCcHHHHHHHh
Confidence 65311111 0 11111000000000 000000 0113444556788899999999999
Q ss_pred HHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 466 ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 466 ~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
++.+++...+.. +.++.|+++|.+ ++.+|......+..++...
T Consensus 310 l~y~lAP~~~~~------~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 310 LFYHLAPKNQVT------KIAKALVRLLRS-NREVQYVVLQNIATISIKR 352 (968)
T ss_pred HHHhhCCHHHHH------HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcc
Confidence 999998876433 346899998875 7778888888777777654
No 91
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=0.00019 Score=79.04 Aligned_cols=368 Identities=17% Similarity=0.114 Sum_probs=242.3
Q ss_pred CCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH
Q 005144 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (712)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (712)
|....+.||..++.-+++++..-. ......+.++.+.++..+..+ .++..|...+.++..--...- -.
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~Ddqd--------sVr~~a~~~~~~l~~l~~~~~--d~ 313 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQD--------SVREAAVESLVSLLDLLDDDD--DV 313 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchh--------hHHHHHHHHHHHHHHhcCCch--hh
Confidence 444455777777777777772211 145566788888888888776 888888888888774211110 12
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNI 283 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~ 283 (712)
...+.+.++....+++..++..+......+...-.. .......++....++++...+++..++.-...++..- .+.
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 335678889999999988888887777777641111 2233445778888888888888888887777665432 223
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Q 005144 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~- 362 (712)
...+.....++.+..+..+.+..++...+..+.++.--.+ +...+ ....|.++..+++..+.|+.+..+.+..+-.
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v 467 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV 467 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence 3455556678988888899899999888887777653222 11111 3456888888999999999998877755554
Q ss_pred -----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchh-hhhhhhHHHHHHHHH
Q 005144 363 -----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRL 436 (712)
Q Consensus 363 -----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~-~~~~~~~~~~~l~~l 436 (712)
........++.+..+-....+.++....+.+..++.... ..+.+...-+.+..+..+ ..+.++.++..+..+
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 344555667777777777789999999999988875432 222222222222222221 223444455555555
Q ss_pred HHhh-----hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhh
Q 005144 437 EEKI-----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 511 (712)
Q Consensus 437 ~~~~-----~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L 511 (712)
.... ....++.++.+...++-.+|...+.++..++.--.. .+.....+|.+.++..++.+.||..++..|..+
T Consensus 546 ~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~--ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 546 VETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ--EITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred HHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc--HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 4433 334566666666666667788888877766432221 233556689999999999999999999998877
Q ss_pred hcc
Q 005144 512 ANK 514 (712)
Q Consensus 512 ~~~ 514 (712)
-+.
T Consensus 624 ~~~ 626 (759)
T KOG0211|consen 624 LKL 626 (759)
T ss_pred Hhh
Confidence 653
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.30 E-value=0.00022 Score=73.09 Aligned_cols=311 Identities=15% Similarity=0.124 Sum_probs=199.4
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC--CHH
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTK 222 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~ 222 (712)
..|..+..+.-....+.+..++-+++. +++..+.++++.+.. ++..-..+.+.+.--.++.-|..+ +..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 445444444444445555544444444 999999999999987 455555566666555666666543 344
Q ss_pred HHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc
Q 005144 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (712)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 302 (712)
=|..|++.++.+..- +..... ...+++..++.+..+++...+..|+.+|+.++..+|+ .+...||+..|++.+.+
T Consensus 84 ER~QALkliR~~l~~-~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEI-KKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHh-cCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 577899999888752 222222 2456889999999999999999999999999988774 56779999999999998
Q ss_pred CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC-------CH--HHHHHHHHHHHHHHH--H-----HHH
Q 005144 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQ--A-----GIA 366 (712)
Q Consensus 303 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~--~-----~~~ 366 (712)
+..++....+.++..+.. .+..+..+...--++.++.-+.+. +. +.-..+..++..+.+ . ..-
T Consensus 159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 777788888888888874 566666665544455565555332 22 233455555555555 1 112
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhcccC--cchhHHHHh------hCcc---ccccccc----hhhhh----hhh
Q 005144 367 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIR------VGGV---QKLQDGE----FIVQA----TKD 427 (712)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~------~~~i---~~L~~~~----~~~~~----~~~ 427 (712)
+..++..|++.|..++++++...+..+..+-+- +.-...+.. .|-. ..+.++- ..... ...
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 236889999999999999999999999988653 211111111 1111 0000000 00000 001
Q ss_pred HHHHHHHHH-HHhhhhhhHHHHHHHHhhh-hhhHHHHHHHHHHHh
Q 005144 428 CVAKTLKRL-EEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHL 470 (712)
Q Consensus 428 ~~~~~l~~l-~~~~~~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~l 470 (712)
.......-+ .-.++.+.++.|+++..+. ++.+...|...|+.+
T Consensus 318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 111111111 1234889999999999988 888999998888865
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.29 E-value=0.0005 Score=70.54 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=167.3
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCC
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 172 (712)
+|..+..+.-....+.+..++-+++. +||..+.+++..+..+++.-..+.+.+.--.++.-|..+...
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~------------~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSK------------EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcH------------HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 34444443333344555544444446 899999999999998888888888888777777777665442
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHH
Q 005144 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (712)
Q Consensus 173 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 252 (712)
..-+++|+..+..+..-....+ ..-.|++..++....+.+...+..++.+|+.++..+| +.+...|+++
T Consensus 82 ------~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~ 150 (371)
T PF14664_consen 82 ------DVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIR 150 (371)
T ss_pred ------hHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHH
Confidence 1456789999988886432222 1245778899999999999999999999999997544 4667899999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-------Ch--hhHHHHHHHHHHHhcCCc
Q 005144 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CS--ESQREAALLLGQFAATDS 323 (712)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~ 323 (712)
.|.+.+.++..++....+.++..+.. +|..++.+...--+..++.-+.+. +. +....+..++..+-...+
T Consensus 151 ~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~ 229 (371)
T PF14664_consen 151 VLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP 229 (371)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC
Confidence 99999988766688888888888864 477777666545566666555443 12 233445555555543333
Q ss_pred chhhhhhhc-CChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 324 DCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 324 ~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.....-... .++..|+..|..+++++|+.....+..+..
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 322212222 567788888888888888877777766655
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.29 E-value=0.00016 Score=75.05 Aligned_cols=210 Identities=21% Similarity=0.103 Sum_probs=144.0
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
+..|+..|.+.+. .|+..++.+|+.+-.. ...+.|+.+|++.+. .++..+
T Consensus 88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p--------~vR~aa 137 (410)
T TIGR02270 88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGGR----------QAEPWLEPLLAASEP--------PGRAIG 137 (410)
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHhcCCch----------HHHHHHHHHhcCCCh--------HHHHHH
Confidence 6788888887766 7888888888766522 236777888876655 677666
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHH
Q 005144 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 265 (712)
+.++.... ....+.+..+|++.++.++..|+.+|+.+.. ...++.|...+.+.++.|
T Consensus 138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHH
Confidence 65554411 1234578888888889999999999988774 345677778888889999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC
Q 005144 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (712)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~ 345 (712)
|..|++++..+-. +. .+..+..............+..++... +. ...++.|..++++.
T Consensus 195 R~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d~ 252 (410)
T TIGR02270 195 RFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQAA 252 (410)
T ss_pred HHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcCh
Confidence 9999998877732 22 234455434433333433333333332 11 14578888888764
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC
Q 005144 346 DVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 399 (712)
. ++..++.+++.+ .....++.|+..+.+.. ++..|..++..++.-
T Consensus 253 ~--vr~~a~~AlG~l-----g~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 253 A--TRREALRAVGLV-----GDVEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred h--hHHHHHHHHHHc-----CCcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 4 888999988874 44567788888886443 999999999999764
No 95
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00011 Score=77.28 Aligned_cols=239 Identities=22% Similarity=0.277 Sum_probs=172.5
Q ss_pred HHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 139 ALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 139 ~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
+|+.|+ ..|+..+.+ -+-++.+|.+..+ -++..|+.+++.++...|+.- ..++|.|++-|
T Consensus 129 AL~GLS~fvTpdLARDL-----a~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkL 190 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDL-----ADDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKL 190 (877)
T ss_pred eecccccccCchhhHHH-----HHHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhc
Confidence 444444 455554432 3557788877766 899999999999997666532 25789999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005144 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (712)
.++|+.|+.+|..+++.|+..+|.+.-. +-|.+.+++.+ .+.-+....+..+++|+--.|...+. .++.
T Consensus 191 eDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Liep 260 (877)
T KOG1059|consen 191 EDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEP 260 (877)
T ss_pred cCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhH
Confidence 9999999999999999999888876433 45788888765 46778888899999998776665444 6888
Q ss_pred HHHhhccCC-hhhHHHHHHHHH--HHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCCh
Q 005144 296 VIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGL 371 (712)
Q Consensus 296 L~~lL~~~~-~~v~~~a~~~L~--~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i 371 (712)
|.+++++.. ..+..++..++. +++.+.+++-..+ .=+++.|-.++.+.|+.++.-++.+++.++. ..-.-..--
T Consensus 261 lt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k 338 (877)
T KOG1059|consen 261 ITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK 338 (877)
T ss_pred HHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH
Confidence 999998653 345555555433 4444433332222 1357888888899999999999999999998 111112234
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHh
Q 005144 372 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 408 (712)
Q Consensus 372 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 408 (712)
+.++++|.+.++.+|-.|+..|..+.. .+|...+++
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk 374 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK 374 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence 668899999999999999999988764 445444443
No 96
>PF05536 Neurochondrin: Neurochondrin
Probab=98.25 E-value=0.0016 Score=70.58 Aligned_cols=241 Identities=16% Similarity=0.152 Sum_probs=162.9
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChh---hHHHHHhCCChHHHHHHHhcccCCccccchhHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE---HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (712)
+...+.+|++.+. +=|-.++-.+.+++ .++. .++.+.+.-+.+.+-++|.....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 4556777777665 66778888888888 4332 244577777788999999876543322 34488
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC
Q 005144 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
+.-++.+|..+|. .++....-...+-||.|++.+.+.+. ++...++.+|..++ ..++++..+.+.|+++.|+..+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh
Confidence 8889999999997 55544333344789999999988776 99999999999999 589999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHH---HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcch-hhhhhh----c
Q 005144 261 EDSAIHYEAVGVIGNLVHSSPNIKK---EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQ----R 332 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~---~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~----~ 332 (712)
.+.....|+.++.++........- .-.-..+++.+-..+.......+-..+..|.++-...+.. ...... .
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 556678888888888654331100 0000123444555555555666777788888776544211 111122 2
Q ss_pred CChHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Q 005144 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 333 ~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (712)
.+...+..++++ ..+.-|..+......|..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344555556654 456667777776666666
No 97
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00044 Score=65.87 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=164.6
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHH-HhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWI-VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
...++++|.+. ++.++..|+..+..++.. ..+... .+.-.++.+.+++....+ -+.|+
T Consensus 5 l~elv~ll~~~------sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--------------~~~a~ 63 (353)
T KOG2973|consen 5 LVELVELLHSL------SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--------------AEPAA 63 (353)
T ss_pred HHHHHHHhccC------ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--------------ccHHH
Confidence 34566666665 677899999988888776 222111 123467778888876544 34789
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh------cCChHH
Q 005144 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPP 211 (712)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~ 211 (712)
.++.|++.++..++.+++. .+..++..+.++.. .+-...+..|.|++............ .|.+..
T Consensus 64 ~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~--------~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l 134 (353)
T KOG2973|consen 64 TALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQS--------PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRL 134 (353)
T ss_pred HHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCccc--------chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHH
Confidence 9999999888888888877 77777777776654 77788899999999866555443322 233444
Q ss_pred HHHhhcCCCH--HHHHHHHHHHHHhhcCChhcHHHHHhCCCH--HHHHHhhcCCCHHHHH-HHHHHHHHhhcCChhHHHH
Q 005144 212 LVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNAL--PTLILMLRSEDSAIHY-EAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 212 L~~lL~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~v~~-~a~~~L~~L~~~~~~~~~~ 286 (712)
....+..+-. .-..+.+.++.||+. .+..+..+.+...+ ..+..+-. ++..+|+ ..+++|.|.+..... ...
T Consensus 135 ~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~-h~~ 211 (353)
T KOG2973|consen 135 ARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKL-HEV 211 (353)
T ss_pred HHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchh-HHH
Confidence 4444443322 234567788999996 66666666654432 22333333 4555554 467788887765433 233
Q ss_pred HHH--cCChHHHH---------------------Hhhc-----cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHH
Q 005144 287 VLA--AGALQPVI---------------------GLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (712)
Q Consensus 287 ~~~--~~~l~~L~---------------------~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 338 (712)
+++ ..+++.++ ++|. ++++.++..-..+|.-+|. ....+..+...|+.+.+
T Consensus 212 lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 212 LLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPIL 290 (353)
T ss_pred HhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHH
Confidence 332 12222222 3332 2467889999999999886 34555666655655544
Q ss_pred HHHhC-CCCHHHHHHHHHHHHH
Q 005144 339 IEMLQ-SPDVQLREMSAFALGR 359 (712)
Q Consensus 339 ~~ll~-~~~~~v~~~a~~~L~~ 359 (712)
-.+=+ ..++++++.+-.....
T Consensus 291 RElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 291 RELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHhcCCCcHHHHHHHHHHHHH
Confidence 44433 3677777665444433
No 98
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.21 E-value=2e-05 Score=87.32 Aligned_cols=279 Identities=15% Similarity=0.055 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc----CChhhHH
Q 005144 78 AAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQ 151 (712)
Q Consensus 78 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~ 151 (712)
+.+..|++.|..++.. .+.+- ..++|.++.++.++.. +||..|+.+|..+. .-+..-.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccc
Confidence 4578899999988873 33321 3469999999999988 99999999998876 2233333
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 231 (712)
.+...-.+|.|-.++.+.+.. .++..-+.+|..|+..--. +.+.+.-.....++..++.+. .
T Consensus 502 niF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nset-------~ 563 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSET-------A 563 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCccccc-------c
Confidence 344555777787777764332 5666666777777741111 111111111112233333320 0
Q ss_pred HHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHH
Q 005144 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (712)
.... .+.....+.. .+-.....++.++++-|++..+..|.-|+.. +.+.--+.-+++.|+..|++.++.+|..-
T Consensus 564 ~~~~--~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aF 637 (1431)
T KOG1240|consen 564 PEQN--YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAF 637 (1431)
T ss_pred cccc--cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHH
Confidence 0000 0111222222 2334556778888888998888888888642 11111223378999999999999888766
Q ss_pred HHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh----cCChHHHHHhhccCChhHHH
Q 005144 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAH----NGGLVPLLKLLDSKNGSLQH 387 (712)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~L~~ll~~~~~~v~~ 387 (712)
...|..++.. ....-++..++|.|.+.|.+..+.|...|+.+|..|++..+.+ .+.++...-+|-+++.-||.
T Consensus 638 fdsI~gvsi~---VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 638 FDSIVGVSIF---VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred HhhccceEEE---EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHH
Confidence 6666655421 1112245667899999999999999999999999999822222 22334444556788999999
Q ss_pred HHHHHHHhcccC
Q 005144 388 NAAFALYGLADN 399 (712)
Q Consensus 388 ~a~~~L~~l~~~ 399 (712)
.++.+|...++.
T Consensus 715 ~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 715 AVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHhh
Confidence 999999888654
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.21 E-value=1.3e-05 Score=66.09 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=112.4
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 208 ~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
.+..|+.-.. ..+.+.++.+..-|+|.+. +|.+...+.+.+++..++..+..++..+...++..|+|+|.+ +.+.+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence 3445554443 4678899999999999996 889999999999999999999999999999999999999975 677889
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.+.++++.++..+.++...+...++.++..++.++...+..+....++..+..+-
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777777777666666555554
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00019 Score=76.80 Aligned_cols=383 Identities=19% Similarity=0.159 Sum_probs=229.2
Q ss_pred HHHHHHH-HHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhC
Q 005144 79 AAKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (712)
Q Consensus 79 ~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (712)
-+..|++ +++.+..+.+. ++..|-+++.+...+- +++..+---+.|.+ ..|+....
T Consensus 29 kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl------------elKKlvyLYl~nYa~~~P~~a~~---- 86 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL------------ELKKLVYLYLMNYAKGKPDLAIL---- 86 (734)
T ss_pred hHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc------------hHHHHHHHHHHHhhccCchHHHh----
Confidence 3444444 55555555444 3346788888888776 88888888888888 77765322
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
++. .++++..+. ++.++..|++.++.+-. +.. ......++.+.+++.++.+|..++-+..++-.
T Consensus 87 -avn---t~~kD~~d~-----np~iR~lAlrtm~~l~v--~~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~ 150 (734)
T KOG1061|consen 87 -AVN---TFLKDCEDP-----NPLIRALALRTMGCLRV--DKI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD 150 (734)
T ss_pred -hhh---hhhccCCCC-----CHHHHHHHhhceeeEee--hHH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence 233 344443331 23666666666554432 221 12345689999999999999999988888874
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 005144 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (712)
.+.+...+.|.++.|..++.+.++.|..+|+.+|..+...+++.-...+....+..++..+...+.--+-. ++.
T Consensus 151 ---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~ 224 (734)
T KOG1061|consen 151 ---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILD 224 (734)
T ss_pred ---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHH
Confidence 44556778899999999999999999999999999998765531111122223344444444433322222 333
Q ss_pred HHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhccCChhHHHHHHH
Q 005144 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDSKNGSLQHNAAF 391 (712)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (712)
.++...+..-... ..++..+...+.+.++.+.-.+..++.++.. .........++++.++.+.. +++..++.
T Consensus 225 ~l~~y~p~d~~ea--~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLr 301 (734)
T KOG1061|consen 225 CLAEYVPKDSREA--EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALR 301 (734)
T ss_pred HHHhcCCCCchhH--HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHh
Confidence 3332222111111 2356777788888888888888888877776 22334455666777776665 77665555
Q ss_pred HHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh-hhhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 005144 392 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALAHL 470 (712)
Q Consensus 392 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l 470 (712)
=+.-+-..... +.....-.-.++ ...+...+.--...+..+.... -..++..|...-..-+.+....++++++++
T Consensus 302 Ni~lil~~~p~---~~~~~~~~Ff~k-ynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 302 NINLILQKRPE---ILKVEIKVFFCK-YNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred hHHHHHHhChH---HHHhHhHeeeee-cCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 44443222111 111110000000 0011122222222222221110 112455555555566888899999999999
Q ss_pred cCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccccc
Q 005144 471 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 517 (712)
Q Consensus 471 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 517 (712)
+..-+.. ++.+..|.++++.+..-+...+...+..+-++-++
T Consensus 378 aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 378 AIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred hhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 8765543 67889999999988887777888888888776543
No 101
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00015 Score=77.58 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=142.8
Q ss_pred HHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHH
Q 005144 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (712)
+.-+..+.+++..... |-+...-.---+.+.+.. |+.. .+++..+++=.+++++ .+
T Consensus 46 DvSslF~dvvk~~~T~------dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np------------~i 102 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTR------DLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP------------LI 102 (734)
T ss_pred chHhhhHHHHhhcccC------CchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH------------HH
Confidence 3444445555544443 555555555567777763 4432 2345666665555555 89
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 005144 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (712)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (712)
|..|++.++.+-...- ......++.+.+++.++ .++..++.++.++-..++ ......|.++.|
T Consensus 103 R~lAlrtm~~l~v~~i------~ey~~~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~~~L 165 (734)
T KOG1061|consen 103 RALALRTMGCLRVDKI------TEYLCDPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLVDAL 165 (734)
T ss_pred HHHHhhceeeEeehHH------HHHHHHHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchhHHH
Confidence 9999988877773321 12246788888888777 888888888877764343 346678999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 213 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
..++.++++.|..+|+.+|..+...+++..........+..++..+...+.--+...+.++.+-...++..... +
T Consensus 166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~-----i 240 (734)
T KOG1061|consen 166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAED-----I 240 (734)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHH-----H
Confidence 99999999999999999999998644431111111223333444443333333444444444433222211112 3
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHH
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 353 (712)
+..+...|.+.+..+...+..++.++....+. .....-...-+.++.++.+.. +++..+
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyva 299 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVA 299 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHH
Confidence 34445555555555555556655555532222 111222334455555554433 444433
No 102
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00095 Score=71.35 Aligned_cols=351 Identities=17% Similarity=0.153 Sum_probs=220.4
Q ss_pred HHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHH
Q 005144 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (712)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~ 187 (712)
-|..+|.+.... ..++..-++++-++.+.+.. ...+.+++...+.+. ++.+-.--
T Consensus 39 dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~--------EVKkLVyv 93 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNI--------EVKKLVYV 93 (968)
T ss_pred HHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCH--------HHHHHHHH
Confidence 466777766551 44444445666666444432 236777777777665 77776666
Q ss_pred HHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHH
Q 005144 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (712)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 267 (712)
-|...+...+... .--|..+-+-|.++|+.+|..|+++|..+-. .++..=.+-.+-++..+..+.||.
T Consensus 94 YLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk 161 (968)
T KOG1060|consen 94 YLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRK 161 (968)
T ss_pred HHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHH
Confidence 6666666454432 1245678889999999999988877775542 111111233344566788999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCH
Q 005144 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (712)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 347 (712)
.|+.+|-.|-.-.++...+ .+..+-.+|.+.++-+.-.|+++...+|. +.. .++ ++-...|+.++.+-+.
T Consensus 162 ~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCP---erl-dLI-HknyrklC~ll~dvde 231 (968)
T KOG1060|consen 162 TAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERL-DLI-HKNYRKLCRLLPDVDE 231 (968)
T ss_pred HHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhch---hHH-HHh-hHHHHHHHhhccchhh
Confidence 9999999997776665443 56677788889999999999999998874 332 233 3556888899988777
Q ss_pred HHHHHHHHHHHHHHHHHHH----------hcC--------------------ChHHHHH----hhccCChhHHHHHHHHH
Q 005144 348 QLREMSAFALGRLAQAGIA----------HNG--------------------GLVPLLK----LLDSKNGSLQHNAAFAL 393 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~----------~~~--------------------~i~~L~~----ll~~~~~~v~~~a~~~L 393 (712)
--+......|..-|+..+. +.| -+..|++ ++.+.++.+...++.+.
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 7777788888877771111 111 0222333 44678899999999999
Q ss_pred HhcccCcchhHHHHhhCccccccccchhhhhhhhHHH------------------------------------HHHHHHH
Q 005144 394 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA------------------------------------KTLKRLE 437 (712)
Q Consensus 394 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~------------------------------------~~l~~l~ 437 (712)
+.++...+. ..+++ .|++.+-..+..+..+. .++.++.
T Consensus 312 y~lAP~~~~-~~i~k-----aLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 312 YHLAPKNQV-TKIAK-----ALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred HhhCCHHHH-HHHHH-----HHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence 999854322 12221 22211111111111111 1222221
Q ss_pred Hh-hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 438 EK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 438 ~~-~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.- --..+++.+....++.+.++...++.+|+.++..... +....+.-|+.++.+.+..|...++..+..|.+..
T Consensus 386 ~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 386 NESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred hhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 11 1345566666677777777777778888877654331 23344677888888888888888888888887754
No 103
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.0013 Score=69.11 Aligned_cols=370 Identities=14% Similarity=0.108 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (712)
.+.+++....+|..+....+.. ...-..+.+.+++..... .-+..+++.++.+..+... ..+.+
T Consensus 109 s~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~------------~~~~~aa~~~ag~v~g~~i-~~~~~ 172 (569)
T KOG1242|consen 109 SKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKI------------AERAGAAYGLAGLVNGLGI-ESLKE 172 (569)
T ss_pred cHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccH------------HHHhhhhHHHHHHHcCcHH-hhhhh
Confidence 3445666666665544321100 011246677788876655 6788888888888843322 23445
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
.+.+..+...+.+.... .-++.++.+....+..-....+ ......+|.++.-..+..+.+|..|..+...+.
T Consensus 173 ~~~l~~l~~ai~dk~~~-------~~re~~~~a~~~~~~~Lg~~~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSA-------LNREAALLAFEAAQGNLGPPFE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred hhHHHHHHHHhcccchh-------hcHHHHHHHHHHHHHhcCCCCC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 66777787777766542 2222233333333322111111 111134444555555667888888877777665
Q ss_pred cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 005144 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (712)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 315 (712)
..-+...-. ..++.++.-+....-.....++..++.++...+.. -...-..++|.+.+.|.+..+++++.+..++
T Consensus 245 ~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 245 RCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 422222111 12333333333334456778888888887665543 4444577999999999999999999999999
Q ss_pred HHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhh----ccCChhHHHHHHH
Q 005144 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAF 391 (712)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~ 391 (712)
.++++.-+ +-. + ...+|.|++.+.++...+. .+...|+.-.....++...+..++.++ ...+..+++.++.
T Consensus 320 ~~~~svid-N~d--I-~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~ 394 (569)
T KOG1242|consen 320 LKFGSVID-NPD--I-QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAI 394 (569)
T ss_pred HHHHHhhc-cHH--H-HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHH
Confidence 99986322 211 1 2456888888887664443 233333222221222233444444444 5567888899999
Q ss_pred HHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 392 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 392 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
++.|++.--+....+.. +-..++|.|-..+.+..|++|..++++|+.+.
T Consensus 395 IidNm~~LveDp~~lap-------------------------------fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 395 IIDNMCKLVEDPKDLAP-------------------------------FLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHHHHHHhhcCHHHHhh-------------------------------hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 99999864333222211 11224566666777778999999999998886
Q ss_pred CCCcccchhhccCchHHHHHHhcCCCch-hhhhhHHHHHhhhc
Q 005144 472 SPDDQRTIFIDGGGLELLLGLLGSTNPK-QQLDGAVALFKLAN 513 (712)
Q Consensus 472 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~-~~~~a~~~L~~L~~ 513 (712)
..-..... .+.+|-+.+.+.+.... -+.-++..+.....
T Consensus 444 e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 444 ERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred HHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 55443332 56677777777653332 33344444444443
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.005 Score=65.20 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=99.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhh
Q 005144 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHI 329 (712)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (712)
+..|.+++.+.++.+|.-++..++.|+... .....+... .+.++..|+ +.|..+|+.++..|..+|. .++...+
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~I 405 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQI 405 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHH
Confidence 455555666666777777777777776552 222333223 778888888 6789999999999999984 4454444
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh--------------------cCChHHHHHhhccCChhHHHHH
Q 005144 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAH--------------------NGGLVPLLKLLDSKNGSLQHNA 389 (712)
Q Consensus 330 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------------------~~~i~~L~~ll~~~~~~v~~~a 389 (712)
+.-+++.|.+-++.+|+....-+.-|+++...+ .+..-.++++. -.+++++..|
T Consensus 406 -----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~ya 479 (938)
T KOG1077|consen 406 -----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYA 479 (938)
T ss_pred -----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHH
Confidence 466777787789999998887777777711111 11122222222 2357788888
Q ss_pred HHHHHhcccCcchhHHHHhhCc
Q 005144 390 AFALYGLADNEDNVADFIRVGG 411 (712)
Q Consensus 390 ~~~L~~l~~~~~~~~~l~~~~~ 411 (712)
+..+...-..+...+.+++.|+
T Consensus 480 ak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 480 AKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHHHhhhHHHHHHHHhhh
Confidence 8888887777777777777665
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.0035 Score=64.72 Aligned_cols=336 Identities=15% Similarity=0.093 Sum_probs=178.1
Q ss_pred cccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
...+--+.+|+..|..+-..... ++..+++++..+...... --....+++...+...++....+
T Consensus 201 n~~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq----~a~V~lvr~~~~ll~~n~q~~~q---- 264 (898)
T COG5240 201 NGNPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQ----LAGVLLVRATVELLKENSQALLQ---- 264 (898)
T ss_pred CCChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccc----hhheehHHHHHHHHHhChHHHHH----
Confidence 34446677888888777632221 244556666554422111 11112334444444445544332
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
..|.|-..+.+.-..+...++++++.++..+ ......+ ..+..|-.+|+++....|-.|+++|..|+...|... .
T Consensus 265 -~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~ 339 (898)
T COG5240 265 -LRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-S 339 (898)
T ss_pred -HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-e
Confidence 2355666676766788888999998888533 1222332 257788889999999999999999999987665421 1
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH----
Q 005144 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---- 362 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---- 362 (712)
+ .=+-+-.++.+.+..+...|...|.. .+.++....++ ..+...+.+-+...+..+..++..|+.
T Consensus 340 v----cN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 340 V----CNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred e----cChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 1 11223344455554454444444433 23344443333 223333333222333334444444443
Q ss_pred ----------HHHHhcCChH---HHHHhhc---cCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhh
Q 005144 363 ----------AGIAHNGGLV---PLLKLLD---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 426 (712)
Q Consensus 363 ----------~~~~~~~~i~---~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~ 426 (712)
..+.+.|+++ .+++.+. +..|+.++.|+..|+....+.+..+..++- +..|-+-...
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrI--L~iLG~EgP~----- 481 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRI--LGILGREGPR----- 481 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHH--HHHhcccCCC-----
Confidence 2333344433 1333321 234566666666666554443333322220 0000000000
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHH
Q 005144 427 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 506 (712)
Q Consensus 427 ~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 506 (712)
...-+..+..+..-+--.+.-||..|..+|..++........ .......|.+++++.+.++|..|+.
T Consensus 482 -----------a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 482 -----------AKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS--PQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred -----------CCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHH
Confidence 001222344444444445677899999999888766543221 2334567889999999999999999
Q ss_pred HHHhhhcc
Q 005144 507 ALFKLANK 514 (712)
Q Consensus 507 ~L~~L~~~ 514 (712)
+|.+|-..
T Consensus 549 ~l~~~~~~ 556 (898)
T COG5240 549 LLRNMRLS 556 (898)
T ss_pred HHHhhhhh
Confidence 99988753
No 106
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.12 E-value=0.0011 Score=68.32 Aligned_cols=214 Identities=33% Similarity=0.377 Sum_probs=154.7
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
..++.+..++.+.+. .+|..+++.++.+.... .++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~~~----------av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGSEE----------AVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhchHH----------HHHHHHHHhcCCCH--------HHHH
Confidence 357888899988866 89999999977666322 47889999988776 8888
Q ss_pred HHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
.++.+|+.+-. + ..++.++.++. +.+..++..+.++|+.+-. ...+..++..+++..
T Consensus 93 ~a~~aLg~~~~--~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD--P---------EAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC--h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccch
Confidence 88887766542 2 35678999998 5889999999999998874 223666777776654
Q ss_pred H------------HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhh
Q 005144 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (712)
Q Consensus 263 ~------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (712)
. .+|..+...++.+- + ...++.+...+.+.+..++..++.+|+.+...+
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~--~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELG--D---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcC--C---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 2 45666666666662 1 226777888888888888888888888887533
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 331 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
..+.+.+...+.+.+..++..++.+|+.+-. ......+...+...+..++..+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGD-----EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 3445777888888888888888888776332 344566777777777666665555554
No 107
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.11 E-value=2.5e-06 Score=78.38 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=72.6
Q ss_pred ccchhhHHHhhhcCHHHHHhccCCCCCCC---C------CceecCC--CCHHHHHHHHHHHhcCCCCCC-----------
Q 005144 554 RRFYAHRICLLASSDAFRAMFDGGYREKD---A------RDIEIPN--IRWEVFELMMRFIYTGSVDVT----------- 611 (712)
Q Consensus 554 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~---~------~~i~l~~--~~~~~~~~~l~~~Y~~~~~~~----------- 611 (712)
..++||+.|.++||+||+.++....+|+. . ..|.+++ ++..--..+++++||+.++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 46999999999999999999975544333 2 2455554 455566788999999987632
Q ss_pred -----------------hhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHH
Q 005144 612 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 650 (712)
Q Consensus 612 -----------------~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~ 650 (712)
...+++|+++|-+|.+.-|.+.|+..+......+++..+
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 245678899999999999999999888877666654443
No 108
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.10 E-value=2.4e-05 Score=64.48 Aligned_cols=127 Identities=15% Similarity=0.109 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
+....+..+|.-.... .+.+.+.+...-|+|.+-+|-+-..+.+..++..++.-|..++. .+.
T Consensus 13 ~Rl~Ylq~LV~efq~t-----t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne------------~Lv 75 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTT-----TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE------------LLV 75 (173)
T ss_pred cHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH------------HHH
Confidence 3455566666666555 57778899999999999999998999999999999999999888 899
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh
Q 005144 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (712)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (712)
+.++..|+|+|-++.+...+.+.++++.++..+.++.. .+...++..+..++..+-..+..+..
T Consensus 76 efgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e--------~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 76 EFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPE--------ITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChH--------HHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999889999999999999999999988765 78888999999998766555554443
No 109
>PF05536 Neurochondrin: Neurochondrin
Probab=98.06 E-value=0.0056 Score=66.52 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=137.2
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-h---hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
.+.+.+.+|... +.+.+..++-.+.++..+ + ..++.+.+.=+.+.|-++|.+...+. .......+
T Consensus 6 ~l~~c~~lL~~~------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~-----~~~~~~~~ 74 (543)
T PF05536_consen 6 SLEKCLSLLKSA------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPS-----DCPPEEYL 74 (543)
T ss_pred HHHHHHHHhccC------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCC-----CCCHHHHH
Confidence 355666666665 344688888899998884 2 23445667767889999998865421 11234678
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.-|+.+|+.+|..|+....---.+-+|.|++++...... ++...+..+|..++. ++..+..+...|.++.|.
T Consensus 75 ~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 75 SLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIAS-SPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHH
Confidence 889999999997777643222234699999999877652 888999999999994 888888999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh-----CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-----~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (712)
+.+.+ .+.....|+.++.+++..... ....+ ..+++.+...+.......+-.++..|..+....
T Consensus 147 ei~~~-~~~~~E~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 147 EIIPN-QSFQMEIALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHh-CcchHHHHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 99987 556678888888888753221 11101 123344444444444455566666666665543
No 110
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.06 E-value=4.5e-06 Score=88.41 Aligned_cols=66 Identities=29% Similarity=0.454 Sum_probs=54.8
Q ss_pred CCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCC------------CCceecCCCCHHHHHHHHHHHhcCC
Q 005144 542 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD------------ARDIEIPNIRWEVFELMMRFIYTGS 607 (712)
Q Consensus 542 ~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~------------~~~i~l~~~~~~~~~~~l~~~Y~~~ 607 (712)
....||+|.+|+..|++||+||++||+||+++|....+.+. ...|.+.++++..|+.+|+|+||+.
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 34679999999999999999999999999999975433221 1255677899999999999999984
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.00 E-value=0.00051 Score=70.92 Aligned_cols=156 Identities=31% Similarity=0.418 Sum_probs=121.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
..++.+.+++.+.+..++..+...++.+.. ...++.+..++.+.++.+|..++.+|+.+- ++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh----
Confidence 467789999999999999999999776653 346899999999999999999999999983 333
Q ss_pred HHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCH------------HHHHHH
Q 005144 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------------QLREMS 353 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------------~v~~~a 353 (712)
.++.++.++. +.+..+|..++++|+.+-. . ..+..++..+.+... .++..+
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~---------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGD--E---------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--h---------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 6778888888 5889999999999999853 1 235677777766442 345555
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCc
Q 005144 354 AFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 354 ~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 400 (712)
..++.. +.+...++.+...+.+.+..++..+..+|..+....
T Consensus 170 ~~~l~~-----~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 170 AEALGE-----LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHH-----cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 555544 444567788999999999999999999999987654
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00015 Score=75.76 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=82.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----h
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----N 282 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-----~ 282 (712)
.+..+..+..+.|..|+..|+..|..|..+..-.+ -.....++++.+.+..||..|+..++-.....+ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33448888889999999999999998885322111 134567889999999999999776665543321 1
Q ss_pred -HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChH
Q 005144 283 -IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (712)
Q Consensus 283 -~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (712)
..... ...++..+...+.+.+..+|.+|+.+|+.+-..+++......+.+++.
T Consensus 273 ~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms 326 (823)
T KOG2259|consen 273 SEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS 326 (823)
T ss_pred hhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh
Confidence 11111 233667788888888999999999999988755555544444444443
No 113
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0042 Score=68.49 Aligned_cols=316 Identities=17% Similarity=0.199 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhhc-ChhhHHHHHh----cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHH
Q 005144 78 AAAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (712)
Q Consensus 78 ~~~~~a~~~L~~l~~-~~~~~~~~~~----~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (712)
+...-++.+|.|+.. +|+....+.. .|..+.+..++.....+ .++..|+..+..+..+.++-..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~-----------~iq~LaL~Vi~~~Tan~~Cv~~ 1808 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHP-----------KLQILALQVILLATANKECVTD 1808 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCc-----------hHHHHHHHHHHHHhcccHHHHH
Confidence 356778999999988 6766554443 46777888888765542 8999999999888888899999
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh-cCCCHHHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGAL 231 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L 231 (712)
+.+.+.+..|+.+|.+.. ..+..++.+|+.++. ++.........|++..+..++ .+..+..|..++..+
T Consensus 1809 ~a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLl 1878 (2235)
T KOG1789|consen 1809 LATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELL 1878 (2235)
T ss_pred HHhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHH
Confidence 999999999999996643 788899999999997 555555566777777777665 456688999999999
Q ss_pred HHhhcCChhc---HHHHHh----------CCCHHHHHHhhcC--CC------HHHHHHHHHHHHHhhcC-------Ch--
Q 005144 232 RTLAFKNDEN---KNQIVE----------CNALPTLILMLRS--ED------SAIHYEAVGVIGNLVHS-------SP-- 281 (712)
Q Consensus 232 ~~L~~~~~~~---~~~~~~----------~~~l~~L~~ll~~--~~------~~v~~~a~~~L~~L~~~-------~~-- 281 (712)
+.|..+.-.. .-.++. .+.-+..+.++.. ++ +..+...-..+..+... ++
T Consensus 1879 aKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~ 1958 (2235)
T KOG1789|consen 1879 AKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTV 1958 (2235)
T ss_pred HHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9998532111 000110 0122444455443 22 23344444444444311 00
Q ss_pred -----h------------------HHHHHHH------------cCChHHHHHhhccCC--hhhHHHHHHHHHHHhcCCcc
Q 005144 282 -----N------------------IKKEVLA------------AGALQPVIGLLSSCC--SESQREAALLLGQFAATDSD 324 (712)
Q Consensus 282 -----~------------------~~~~~~~------------~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~ 324 (712)
+ .+..+.+ .+.++.+++++...+ .+.-.....++..+....+.
T Consensus 1959 ~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~ 2038 (2235)
T KOG1789|consen 1959 KWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPN 2038 (2235)
T ss_pred cccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcc
Confidence 0 0001111 113344444444332 22222333344455555666
Q ss_pred hhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC
Q 005144 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 325 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 399 (712)
....+-..|.+|.++..+...+..+-..|.++|..|+. ..+....++..++..+...-. ...-|+.+|..+...
T Consensus 2039 LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r 2117 (2235)
T KOG1789|consen 2039 LADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKR 2117 (2235)
T ss_pred hhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHH
Confidence 66677778999999998866555555788888888887 666777777777777754332 233677777666431
Q ss_pred --cchhHHHHhhCccccc
Q 005144 400 --EDNVADFIRVGGVQKL 415 (712)
Q Consensus 400 --~~~~~~l~~~~~i~~L 415 (712)
.+-..+..+.|.++.|
T Consensus 2118 ~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2118 NTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred hHHHHHHHHhccCcHHHH
Confidence 2222334444444443
No 114
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.94 E-value=4.4e-05 Score=78.72 Aligned_cols=266 Identities=16% Similarity=0.107 Sum_probs=166.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
++..++.+|+++.+.++..|+...+.|+.--. ...+.+...| .+|..-+....+++.-..+.+++.+.....-..-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45567788899999999999998888873111 1112222222 3466777788999998888888888543211101
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGI 365 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (712)
.--..|++|.|..+|++....+..+....++.++...++....---..+---|+..|++.+.++|++|..+++-++. .+
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~-ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR-AI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh-hc
Confidence 11136899999999999999999999999999997766643211112233457778888999999999999988877 11
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
.-.+.+..|++-|+.++...+....-++.-.+... + --.++
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----------g-----------------------------pfsVl 802 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC----------G-----------------------------PFSVL 802 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----------C-----------------------------chhhH
Confidence 11122334444444444443333333333222110 0 01134
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
|.|..=-..++..||.-.+++++.+-..-.+...=.-.-..|.|...+.+.++..|.-|+..+..|+-+.
T Consensus 803 P~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 803 PTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 4444444556777888888888877443221111111234678888889999999999999888888764
No 115
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.90 E-value=0.00044 Score=77.18 Aligned_cols=281 Identities=19% Similarity=0.070 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh---cCCcchhHHHh
Q 005144 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRM 205 (712)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~ 205 (712)
+.+..|+..|..++ .+.+.+ -..++|.++.++.++.. .|+..|+.+|..+.. +-+.....++.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 67889999999988 333332 12358999999988876 899988888877763 33444445666
Q ss_pred cCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 206 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 206 ~~~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
.-.+|.|-.++.+ ....+|..-+..|..|+.. .. .+.+.+--.....++.+++.+. ..+. ..+. ..
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~--rFle~~q~~~~~g~~n~~nset-------~~~~-~~~~-~~ 572 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AY--RFLELTQELRQAGMLNDPNSET-------APEQ-NYNT-EL 572 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HH--HHHHHHHHHHhcccccCccccc-------cccc-ccch-HH
Confidence 6778888888887 4456777778888877741 11 1111100011111233433320 0000 0111 11
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--
Q 005144 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-- 362 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-- 362 (712)
+.+ ..++-.....+|.++++-|++.-...|.-||..-. +.=...-+++.|+..|++.++.+|.+-...+.-++.
T Consensus 573 ~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 573 QAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 111 12234456677777777777777777777774211 111122357899999999999998766555554444
Q ss_pred -HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh
Q 005144 363 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 441 (712)
Q Consensus 363 -~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (712)
..-.+...+|.|.+-|.++++.|...|++++.-|+.. |.++.. .-
T Consensus 649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~----------~ll~K~------------------------~v 694 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL----------GLLRKP------------------------AV 694 (1431)
T ss_pred eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh----------cccchH------------------------HH
Confidence 3335677888899999999999999999999877643 222211 11
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
.++++....+|-+++..+|..++..|...+..-
T Consensus 695 ~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 695 KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 124556777888999999999999888775543
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.90 E-value=0.00041 Score=73.58 Aligned_cols=270 Identities=19% Similarity=0.169 Sum_probs=178.6
Q ss_pred HHHHHHhhcCCcchhHHHhcCChHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHH
Q 005144 187 DAITNLAHENSSIKTRVRMEGGIPPLVELL----------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (712)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 256 (712)
.+|..+++ ++.....+....++..|.++- ...++.+...|+++|+|+...++..+..+.+.|..+.++.
T Consensus 3 ~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 34444444 333444444445555555554 2456889999999999999989999999999999999999
Q ss_pred hhcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhhcc-----------------CChhhHHHHHH
Q 005144 257 MLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-----------------CCSESQREAAL 313 (712)
Q Consensus 257 ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~-----------------~~~~v~~~a~~ 313 (712)
.++.. +.++.-...++|.-++......+..+++. +++..+...|.. .+.....+++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99876 67888888888888887777777777664 777777776642 13345667888
Q ss_pred HHHHHhcCCcchhhhhhhcCChHHHHHHhC---------CCCHHHHHHHHHHHHHHHH---HHH--------------Hh
Q 005144 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQ---AGI--------------AH 367 (712)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~~L~~l~~---~~~--------------~~ 367 (712)
++.|+....+.... -.....++.++.++. .+.......+..+|.|+=. ..+ ..
T Consensus 162 llFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 162 LLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999865544332 011233333333321 1234566677777777733 111 11
Q ss_pred cCChHHHHHhhcc----C----ChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHh
Q 005144 368 NGGLVPLLKLLDS----K----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 439 (712)
Q Consensus 368 ~~~i~~L~~ll~~----~----~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~ 439 (712)
...+..|+++|.. . -.+...-.+.+|.+++...+..+..++...++++.+....+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e---------------- 304 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPE---------------- 304 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCC----------------
Confidence 2235556666621 1 135666777888888887677777777777777643222111
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 440 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 440 ~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
....+-.+|+++|.+..+.++..++..|..|+...
T Consensus 305 ~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 305 KGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 13446778999999999999999999999987544
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=1.7e-05 Score=52.76 Aligned_cols=40 Identities=45% Similarity=0.667 Sum_probs=36.6
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (712)
+++++..+++.|++|.|+++|.+++. +++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~------------~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP------------EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH------------HHHHHHHHHHHHHh
Confidence 46788999999999999999997777 99999999999997
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00015 Score=75.79 Aligned_cols=249 Identities=15% Similarity=0.122 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-----cchhHHHh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRM 205 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~ 205 (712)
.||.+|+..|..|.+.....+. .....++++.+... .++..|+..+.......+ +..+.-..
T Consensus 213 ~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 213 RVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred chHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 4555555555444432221111 24556677776665 888777655555443221 11111111
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHH-HHHHHhh-c----
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAV-GVIGNLV-H---- 278 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~-~~L~~L~-~---- 278 (712)
..+...+-..+.+.+..||..|+++|+.+..-+++......+..++..+-.-- ....+.-..... |.=+.=. .
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advps 359 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPS 359 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCch
Confidence 23445566667777888999999999988754444444444433333211100 000111100000 0000000 0
Q ss_pred -CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 005144 279 -SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (712)
Q Consensus 279 -~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 357 (712)
..++....++.+|.-..++.-|++.-.++|+.|+..++.|+...+.... ..+..|+.++++....||..|..+|
T Consensus 360 ee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 360 EEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred hhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0112335667788889999999998899999999999999987666543 3568999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005144 358 GRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 358 ~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
..++........-++.+...|.+.+..+|++.-..|.+.-
T Consensus 435 ~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 435 TMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999855555666788999999999999999888887753
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.88 E-value=0.0015 Score=69.25 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=123.5
Q ss_pred HHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHH
Q 005144 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (712)
Q Consensus 83 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~ 161 (712)
|+.+|.-+++++.....+....++..|+++-.-.... .......++.+...|+++|+|+. .++..|..+.+.|+.+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~--~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESD--EDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccc--cccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 3566777778877777777766777776665211100 00112235589999999999999 99999999999999999
Q ss_pred HHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc-CChHHHHHhhcC-----------------CCHHH
Q 005144 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-----------------TDTKV 223 (712)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~-----------------~~~~v 223 (712)
++..|+....... ++++.-..++.|.-++......+..+++. +++..+...+.. .+...
T Consensus 79 l~~~Lk~~~~~~~---~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 155 (446)
T PF10165_consen 79 LCERLKNYSDSSQ---PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA 155 (446)
T ss_pred HHHHHHcccccCC---ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence 9999988743211 12666777888877776666666655554 677777765531 13456
Q ss_pred HHHHHHHHHHhhcCChhcHHHHHhCCCHHH----HHHhh---cC--CCHHHHHHHHHHHHHh
Q 005144 224 QRAAAGALRTLAFKNDENKNQIVECNALPT----LILML---RS--EDSAIHYEAVGVIGNL 276 (712)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~----L~~ll---~~--~~~~v~~~a~~~L~~L 276 (712)
...+++++.|+....+..... ...+.++. +..++ .. +......+++.+|.|+
T Consensus 156 l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 156 LSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 778999999998655544320 11223333 33341 11 2346788888888888
No 120
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.82 E-value=3.9e-05 Score=50.95 Aligned_cols=41 Identities=44% Similarity=0.617 Sum_probs=38.0
Q ss_pred ChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 005144 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (712)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (712)
++++++.+++.|+++.|+.+|.+.+.++++.++|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999973
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0018 Score=74.22 Aligned_cols=320 Identities=15% Similarity=0.099 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh
Q 005144 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll 258 (712)
|.-+..|+.-+..++.... -+..-.-...||.|.++=.+++..|+..-..+...|..+.....+...+ .+++-|+.-+
T Consensus 971 wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~l 1048 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNL 1048 (1702)
T ss_pred hhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhc
Confidence 3455666777777764221 1111222357788888888899999877766666666533333444443 3677777777
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhccCChhhHHH---HHHHHHHHhcC--Ccc---hhhh
Q 005144 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DSD---CKVH 328 (712)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~---a~~~L~~l~~~--~~~---~~~~ 328 (712)
.+..-.||+.+|.+|..|..+.+.. .+.+ ......+...+++-.+.+|+. ++.+|+.++.. +.. ....
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 8888899999999999998875431 1111 123334444444444556655 44466666522 111 1111
Q ss_pred hhhcCChHHHHHH-hCCCCHHHHHHHHHHHHHHHH--HHHHh---cCChHHHHHhhccCChhHHHH-HHHHHHhcccCcc
Q 005144 329 IVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQ--AGIAH---NGGLVPLLKLLDSKNGSLQHN-AAFALYGLADNED 401 (712)
Q Consensus 329 l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~--~~~~~---~~~i~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~~ 401 (712)
++ ..++|.|+.- +-+.-+++|..+..++..|+. ..... ...++.|++....-++.+... ++.+ .|... +
T Consensus 1127 ~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~--e 1202 (1702)
T KOG0915|consen 1127 AL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET--E 1202 (1702)
T ss_pred HH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH--H
Confidence 11 2334444332 135678999999999999998 22211 234566666666655554332 2222 22110 1
Q ss_pred hhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCCcccchh
Q 005144 402 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIF 480 (712)
Q Consensus 402 ~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~l 480 (712)
.......++ ....+.-+.+...++.++.-.-..++|.+.++++.+ .-..|..++..+..|+..-...-.-
T Consensus 1203 alDt~R~s~---------aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1203 ALDTLRASA---------AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred HHHHHHHhh---------hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 101111110 001111222333344444445567889999999988 6677888888888875432211111
Q ss_pred hccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 481 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 481 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.....+..+...+.+.|+.+++.-+.|+..|++-+
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 23344678888889999999999999999998754
No 122
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.013 Score=65.31 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=158.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhh
Q 005144 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 249 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
+++..|...+++.+..||..|++.++.++...|.. ....++...++++... ++..-..++.+|+.++...----.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46777888889999999999999999999876622 2223555666666543 355667888999999853211100
Q ss_pred hhhhcCChHHHHHHhC--------CCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005144 328 HIVQRGAVRPLIEMLQ--------SPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 392 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~--------~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 392 (712)
.. ..++|.++..+. +....||.+|+.+++.+++ +.+...=....|+..+.+.+-.+|+.|..+
T Consensus 417 -~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 -LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred -HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 01 246677777763 2346799999999999998 111111112234445567788889988888
Q ss_pred HHhcccCcchhHHHHhhCcccccccc-chhhhhhhhHHHHHHHHHHHh--hhhhhHHHHHHH-HhhhhhhHHHHHHHHHH
Q 005144 393 LYGLADNEDNVADFIRVGGVQKLQDG-EFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALALA 468 (712)
Q Consensus 393 L~~l~~~~~~~~~l~~~~~i~~L~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~Lv~l-l~~~~~~v~~~a~~~L~ 468 (712)
+-..-.-..+. --|++.+... .+.......|....+..+... +...++.+++.. +.+.++.++..++++|.
T Consensus 495 lqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 495 LQENVGRQGNF-----PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHhccCCCC-----CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 86553321111 0122332222 223444445555555555432 356677777766 78889999999999999
Q ss_pred HhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhh
Q 005144 469 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 469 ~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~ 512 (712)
.|+....- ....+.++.|+....+++...|.-+..+...+.
T Consensus 570 ~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 570 KLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 98654331 124466788888888888887765544444333
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0085 Score=62.02 Aligned_cols=324 Identities=18% Similarity=0.115 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C--ChhhHHHHHh
Q 005144 80 AKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V--KPEHQQLIVD 155 (712)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~--~~~~~~~~~~ 155 (712)
....++....+.. ++..+.++ .|.|-..+++... .|...+++++..++ . .++.-+.
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e------------mV~lE~Ar~v~~~~~~nv~~~~~~~--- 303 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE------------MVFLEAARAVCALSEENVGSQFVDQ--- 303 (898)
T ss_pred heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch------------hhhHHHHHHHHHHHHhccCHHHHHH---
Confidence 3344444555444 45555554 4666666666555 78889999999888 3 2333222
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
.+..|-.+|.+... ..+-.|+++|..++...|..- .-+-+-+-.++.+.+..+...|...|..-
T Consensus 304 --~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd~Nr~IstyAITtLLKT- 367 (898)
T COG5240 304 --TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISDENRTISTYAITTLLKT- 367 (898)
T ss_pred --HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhcccccchHHHHHHHHHc-
Confidence 35667777777665 778889999999997666422 12334566777777877877777776543
Q ss_pred cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHH
Q 005144 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALL 314 (712)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~ 314 (712)
++++....+++ .++.++.=+.++-.-+...|++.|+.+. |..... .+..|...|. .+..+-++.+..+
T Consensus 368 -Gt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vda 436 (898)
T COG5240 368 -GTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDA 436 (898)
T ss_pred -CchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHH
Confidence 35566555554 3555665555665666667777776664 322222 3444444443 4456777777777
Q ss_pred HHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHH
Q 005144 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAA 390 (712)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (712)
+..+....++.+... +..|+..+.+ ..++ -+.+.|+-|.+ ..-.-...+..+.+-+--.+..+|..|+
T Consensus 437 isd~~~~~p~skEra-----Le~LC~fIEDcey~~---I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv 508 (898)
T COG5240 437 ISDAMENDPDSKERA-----LEVLCTFIEDCEYHQ---ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAV 508 (898)
T ss_pred HHHHHhhCchHHHHH-----HHHHHHHHhhcchhH---HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence 777776666655443 3455555543 2222 33334444333 0000011223333333335677888888
Q ss_pred HHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 005144 391 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 470 (712)
Q Consensus 391 ~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l 470 (712)
.+|..++-+.+... ....+...|-+++.+.+.+||..|..+|.++
T Consensus 509 ~aLskf~ln~~d~~-----------------------------------~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 509 QALSKFALNISDVV-----------------------------------SPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHhccCccccc-----------------------------------cHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 88887776543210 0122445577788999999999999999998
Q ss_pred cCCCcccch--hhccCchHHHHHHh
Q 005144 471 CSPDDQRTI--FIDGGGLELLLGLL 493 (712)
Q Consensus 471 ~~~~~~~~~--l~~~~~~~~L~~ll 493 (712)
-.....-.. .-+.|-+|.|..-+
T Consensus 554 ~~~da~~pl~~sd~~~dipsle~~l 578 (898)
T COG5240 554 RLSDACEPLFSSDELGDIPSLELEL 578 (898)
T ss_pred hhhhhhhccccccccCCcchhHHhh
Confidence 644432221 12335566665433
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0053 Score=61.52 Aligned_cols=225 Identities=18% Similarity=0.195 Sum_probs=161.7
Q ss_pred HHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----hc----HHHHHhCCCHHHHHHhh
Q 005144 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-----EN----KNQIVECNALPTLILML 258 (712)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~-----~~----~~~~~~~~~l~~L~~ll 258 (712)
-+.-++. .|.....+++.++++.|+.+|.+.|.++..+++..|..|+-.+- +. ...+++.++++.|++-+
T Consensus 107 ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv 185 (536)
T KOG2734|consen 107 EMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV 185 (536)
T ss_pred HHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence 3334443 67777788999999999999999999999999999999984221 21 44566788899998877
Q ss_pred cCCC------HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhh
Q 005144 259 RSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIV 330 (712)
Q Consensus 259 ~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (712)
..-+ ..-...++..+-|+....++.+..+++.|.+..|+.-+... -......|..++.-+-..+.+++..+.
T Consensus 186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 6422 23456788899999998899999999999888887755432 234455566666666666666888888
Q ss_pred hcCChHHHHHHhC---CCC------HHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 331 QRGAVRPLIEMLQ---SPD------VQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 331 ~~~~l~~L~~ll~---~~~------~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
..+++..+++-+. ..+ .+.-++...+|+.+.. ..+....|+....-++.. ....+..++++|-..
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~a 344 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHA 344 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence 8899999988872 222 3455666666766665 667777788765555554 666778888888888
Q ss_pred ccCc---chhHHHHhhCcccc
Q 005144 397 ADNE---DNVADFIRVGGVQK 414 (712)
Q Consensus 397 ~~~~---~~~~~l~~~~~i~~ 414 (712)
..++ +++..+++.+++..
T Consensus 345 m~g~~gt~~C~kfVe~lGLrt 365 (536)
T KOG2734|consen 345 MFGPEGTPNCNKFVEILGLRT 365 (536)
T ss_pred HhCCCchHHHHHHHHHHhHHH
Confidence 6554 46667777665554
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0092 Score=66.54 Aligned_cols=256 Identities=21% Similarity=0.219 Sum_probs=149.3
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CCh-hhHHHHHhCCChHHHHHHHhcccCCccccchhHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (712)
+++..|++-+.+.+. .||..|++.++.++ ..| +..+. ++...++++...++. ..
T Consensus 341 ~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~-------~a 396 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDD-------SA 396 (1133)
T ss_pred HHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCch-------hH
Confidence 456667777777766 89999999999999 555 22222 456666666544421 33
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhc-HHHHHhCCCHH
Q 005144 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALP 252 (712)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~ 252 (712)
-..++-+|..++...--....+ ..++|.++.-|.- ....||.+||.+++.++...... .+.+...=.-.
T Consensus 397 WHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 397 WHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred HHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 3478888888885332211111 2456666666642 33579999999999998644433 11222211223
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhc
Q 005144 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (712)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (712)
.|+..+-+++..+|+.|..++-.......+. ..|++ |+...+.-....+.++-..+..-....+..+..++
T Consensus 475 LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-- 545 (1133)
T KOG1943|consen 475 LLIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-- 545 (1133)
T ss_pred HHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH--
Confidence 3445666778889999988886665432111 11222 22222222233344444444433333333333333
Q ss_pred CChHHHHHH-hCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005144 333 GAVRPLIEM-LQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 333 ~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
..++.. +..-+..+++.++++|.+|+. ......+.++++++...+.+...+..+..+.+.+.
T Consensus 546 ---~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 546 ---NHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred ---HHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 222222 445688889999999998887 44555677888888887888777776666655554
No 126
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0038 Score=68.80 Aligned_cols=284 Identities=17% Similarity=0.204 Sum_probs=191.8
Q ss_pred HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
.++.++..|+..+..+..+.+....+..+|.+..|+.+|.+.. ..|+.++..|..|+.+++......
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-------------S~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-------------SMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-------------HHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4667889999999999999899999999999999999998764 489999999999999999988889
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC---CcchhHHHh----------cCChHHHHHhhcC--C
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---SSIKTRVRM----------EGGIPPLVELLEF--T 219 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~L~~lL~~--~ 219 (712)
+.|++..+.+++-..... ..+.+++..+..+..+. |..+..++. ...-+..+..+.. .
T Consensus 1851 ~hg~l~yil~~~c~~~~~-------QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSD-------QQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred hcCchhhhhHHHhccCcH-------HHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 999999999888665543 77888899999887532 222211110 1222344444432 2
Q ss_pred CH------HHHHHHHHHHHHhhcC-------Chhc-------------------------HHHHHh------------CC
Q 005144 220 DT------KVQRAAAGALRTLAFK-------NDEN-------------------------KNQIVE------------CN 249 (712)
Q Consensus 220 ~~------~v~~~a~~~L~~L~~~-------~~~~-------------------------~~~~~~------------~~ 249 (712)
+| ..+......+..+..+ ++.. +..+.+ .+
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 22 2344444455544421 1100 111111 12
Q ss_pred CHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhh
Q 005144 250 ALPTLILMLRSED--SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 250 ~l~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
.++.+..++..++ .........++..|....+.....+-.-|.+|.++..+...+..+-+.|..+|-.++. +..+..
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHH
Confidence 2333333443332 2233333444555555667777777778999999999887766677899999999985 678888
Q ss_pred hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhcc
Q 005144 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLDS 380 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~~ 380 (712)
.+.....+..++..++.. +....-|+.+|..+.. ......|.++.|+++|..
T Consensus 2083 AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 888878888888888653 3344478888888877 455678999999999853
No 127
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00025 Score=72.33 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=140.5
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.++.+|..++ .-.-.|.-+.+....+.|+++|.+++- -+...+...++|+...-.+.+..+...|++..|+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~ 479 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV 479 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHhhHHHHHH
Confidence 3444555555 444567788888999999999988644 3334566777888777777888899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh---HHHHHHH
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVLA 289 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~---~~~~~~~ 289 (712)
.++.+.|..++....|+++++..+...+ +-.+...-++..++.+..++.-.++..++..|.|++..... .....+.
T Consensus 480 ~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K 559 (743)
T COG5369 480 NLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK 559 (743)
T ss_pred HHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe
Confidence 9999999999999999999999755443 33456667899999999999999999999999999863222 1111111
Q ss_pred ----cCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhh
Q 005144 290 ----AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (712)
Q Consensus 290 ----~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (712)
.-....|+..++..++-...+.+..|.+++..+...+..+.+
T Consensus 560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 124567777777777777777888888888766555554443
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.019 Score=57.73 Aligned_cols=247 Identities=18% Similarity=0.156 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCC----------hhh
Q 005144 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK----------PEH 149 (712)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~----------~~~ 149 (712)
....+.-+.-++.-|+.-..+++..+++.|+.+|...+. ++-...+..+..+.+. ...
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevL 168 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVL 168 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHH
Confidence 345666777778888888889999999999999999988 8888888899888722 123
Q ss_pred HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC--CCHHHHHHH
Q 005144 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAA 227 (712)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a 227 (712)
-+.+++.++++.|++-+..-+..... ...-...++.++-|+..-.+.....+++.|.+.-|+.-+.. +-..-...|
T Consensus 169 idaLvdg~vlaLLvqnveRLdEsvke--ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Ya 246 (536)
T KOG2734|consen 169 IDALVDGQVLALLVQNVERLDESVKE--EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYA 246 (536)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcchh--hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHH
Confidence 56777889999999888765432111 11345667888889887777777778888877777664433 335567788
Q ss_pred HHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc-----CC----CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHH
Q 005144 228 AGALRTLAFKNDENKNQIVECNALPTLILMLR-----SE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (712)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~-----~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 298 (712)
..+|.-+..++.+++......+++..++.-+. ++ ..+.-.+...+|+.+... +.++..+....++....-
T Consensus 247 sEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~L 325 (536)
T KOG2734|consen 247 SEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNL 325 (536)
T ss_pred HHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHH
Confidence 99999998877778888888888998887552 21 346677788888888765 677888888888886666
Q ss_pred hhccCChhhHHHHHHHHHHHhcCCc--chhhhhhhcCChHHHHHHh
Q 005144 299 LLSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 299 lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~l~~L~~ll 342 (712)
+++. ....+..+..+|-....+++ .++..+++..++..+..+.
T Consensus 326 mlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 326 MLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 6665 45567778888888887766 7778888888887777765
No 129
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.73 E-value=0.00081 Score=65.11 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHhhcC--CcchhHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHH
Q 005144 178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (712)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 253 (712)
+|+.+..++.-|..++.++ ......+.. ...+..+...+.+....+...|+.++..++..-...-....+ ..++.
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHH
Confidence 4788999999999998766 222222211 145567777777777889999999999998643333333333 47899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhh--
Q 005144 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-- 331 (712)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-- 331 (712)
|+..+.++...++..|..+|..++...+.. ..+ .++.+...+.+.++.+|..++..+..+....+.....+..
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 999999999999999999999998764411 111 2566777778889999999999999887544411122222
Q ss_pred --cCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 332 --RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 332 --~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
..+++.+...+.+.+++||..|-.++..+..
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999999988776
No 130
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.68 E-value=7.9e-05 Score=68.75 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=69.5
Q ss_pred hcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCC--ceecCCCCHHHHHHHHHHHhcCCCCC---Chh
Q 005144 539 VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDV---TLD 613 (712)
Q Consensus 539 ~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~~ 613 (712)
+....++|+-+......|++||++|++|||||+.+.+++....... .|..-++..+.|+.+++|+|+|+.-+ ...
T Consensus 125 ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fq 204 (401)
T KOG2838|consen 125 YERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQ 204 (401)
T ss_pred hheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCc
Confidence 3445678999999999999999999999999999887765443333 55566899999999999999998754 344
Q ss_pred hHHHHHHHHHHhChH
Q 005144 614 IAQDLLRAADQYLLE 628 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~ 628 (712)
+..-|..++.-|+-+
T Consensus 205 n~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 205 NSDILEQLCEDFGCF 219 (401)
T ss_pred hHHHHHHHHHhhCCc
Confidence 566666666666643
No 131
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.67 E-value=0.00015 Score=58.16 Aligned_cols=86 Identities=34% Similarity=0.438 Sum_probs=69.4
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 209 i~~L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
+|.|++.| .++++.++..++.+|+.+.. ..+++.|+.+++++++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 88899999999999995542 135899999999999999999999999983
Q ss_pred HHcCChHHHHHhhccC-ChhhHHHHHHHHH
Q 005144 288 LAAGALQPVIGLLSSC-CSESQREAALLLG 316 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~ 316 (712)
+...++.|..++.++ +..++..++.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123788899999875 4556888888774
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0045 Score=57.95 Aligned_cols=200 Identities=27% Similarity=0.258 Sum_probs=130.2
Q ss_pred HHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchh
Q 005144 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (712)
Q Consensus 100 ~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (712)
+....++|.|+..|...+. .+-||..|+.+|+.+. .++ .++.+-++.+++..
T Consensus 63 ~~~~~Av~~l~~vl~desq----------~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~-------- 114 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQ----------EPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCK-------- 114 (289)
T ss_pred hccchhhHHHHHHhccccc----------chHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCcc--------
Confidence 3345689999999988776 4489999999999988 333 24555555544433
Q ss_pred HHHHHHHHHHHHHhhcCCcch-----hHH-------HhcCChHHHHHhhcCCC-HH-HHHHHHHHHHHhhcCChhcHHHH
Q 005144 180 SVIRRAADAITNLAHENSSIK-----TRV-------RMEGGIPPLVELLEFTD-TK-VQRAAAGALRTLAFKNDENKNQI 245 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~-----~~~-------~~~~~i~~L~~lL~~~~-~~-v~~~a~~~L~~L~~~~~~~~~~~ 245 (712)
++.+.+..++..+-..+.-.+ ... ...+-+..+-..|.+.+ +. -+..|...|+|+..
T Consensus 115 ~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--------- 185 (289)
T KOG0567|consen 115 EVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--------- 185 (289)
T ss_pred ccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc---------
Confidence 666655555555543111100 000 01122334444443333 22 24456666766652
Q ss_pred HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCc
Q 005144 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDS 323 (712)
Q Consensus 246 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~ 323 (712)
...+..|++-+..++.-.|..++.+++.|-. +. .++.|...|.+. ++-+|.+|+.+|+.++. +
T Consensus 186 --EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e 250 (289)
T KOG0567|consen 186 --EEAINALIDGLADDSALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E 250 (289)
T ss_pred --HHHHHHHHHhcccchHHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H
Confidence 1246777777888888899999999999942 22 577788877653 68899999999999874 2
Q ss_pred chhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005144 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (712)
Q Consensus 324 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 360 (712)
.+++.|.+.+.+..+-+++.+..+|..+
T Consensus 251 ---------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 ---------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ---------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3567888889998888998887777543
No 133
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.64 E-value=0.00036 Score=67.56 Aligned_cols=179 Identities=19% Similarity=0.182 Sum_probs=115.4
Q ss_pred ccCChhhHHHHHHHHHHHhcCC--cchhhhhhh--cCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH--HhcCCh
Q 005144 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGI--AHNGGL 371 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~--~~~~~i 371 (712)
.+.+++.|..+..-|..+..++ ......+.. ..++..+...+.+....+...|+.++..++. ..+ .-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4568999999999999998765 222232322 2566778888888888899999999999998 111 123467
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 005144 372 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 451 (712)
Q Consensus 372 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~l 451 (712)
+.|++.+.+++..++..|..+|..+..+-.....+ ..+.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 78888888888999999999999987654311111 13456667
Q ss_pred HhhhhhhHHHHHHHHHHHhcCCCc-ccchhhc----cCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 452 MRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 452 l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~----~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
+.+.++.+|..++..+..+..... ....+.. ...++.+..++.++++++|..|-.++..+.+..+
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 788899999999999998866544 2222222 3367888999999999999999999999988754
No 134
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00029 Score=65.45 Aligned_cols=94 Identities=29% Similarity=0.455 Sum_probs=80.2
Q ss_pred EEEEecCccchhhHHHhhhcCHHHHHhccCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHH
Q 005144 547 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 622 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~l~~~A 622 (712)
+.+.+||..|..++.-|.....||+.|+.+++. ...++-|-+ |=+|.=|+.+|.|+-.|.+.++ ...+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 446789999999999999999999999998874 233455776 4599999999999999988875 45677999999
Q ss_pred HHhChHhHHHHHHHHHHhc
Q 005144 623 DQYLLEGLKRLCEYTIAQD 641 (712)
Q Consensus 623 ~~~~~~~l~~~c~~~l~~~ 641 (712)
.+|.+++|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987665
No 135
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.63 E-value=0.00021 Score=57.16 Aligned_cols=86 Identities=35% Similarity=0.502 Sum_probs=70.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhh
Q 005144 251 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (712)
Q Consensus 251 l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (712)
++.|++.+ +++++.+|..++.+|+++- ++ ..++.|+.+++++++.+|..++++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57788888 8889999999999999762 12 258899999999999999999999998742
Q ss_pred hhcCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 005144 330 VQRGAVRPLIEMLQS-PDVQLREMSAFALG 358 (712)
Q Consensus 330 ~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~ 358 (712)
...++.|.+++.+ .+..++..|..+|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3477999999966 55677888888874
No 136
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.63 E-value=0.0024 Score=61.17 Aligned_cols=228 Identities=17% Similarity=0.132 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
++-.+.-|+.++.++...++.|..+... .+-..++++++..-. +.+++...+-+++.++.++.+.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 4556888999999999999998876543 355678888876544 22899999999999998888764433
Q ss_pred hC-CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc-chhHHHhcCChHHHHHhhcC---CCHHHHHHHHH
Q 005144 155 DN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEF---TDTKVQRAAAG 229 (712)
Q Consensus 155 ~~-~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~ 229 (712)
.. ..+..++.+.+..... .+.+.++.++.|++...+. .-....-.|-+...++.|.. +|++++...-.
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 22 3466677777665543 8889999999999963321 11122223434455555532 34444332211
Q ss_pred HHHHhh---------------------cCCh---------hcHHHHHh--CCCHHHHHHhhcCCCHH-HHHHHHHHHHHh
Q 005144 230 ALRTLA---------------------FKND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGNL 276 (712)
Q Consensus 230 ~L~~L~---------------------~~~~---------~~~~~~~~--~~~l~~L~~ll~~~~~~-v~~~a~~~L~~L 276 (712)
.=..|. ..+| .+.+.+.+ ..+++.|.++++..++. ...-||.-+..+
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~ 384 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQL 384 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHH
Confidence 111111 0111 12333332 35678888888887655 556788888888
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 005144 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (712)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (712)
....|+....+...|+=..+++++++++++++-+|..++..+.+
T Consensus 385 Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 385 VRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 88889998999999999999999999999999999999887653
No 137
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.018 Score=61.18 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (712)
.....|+.+++|+.+- +++..+. .-+-++|.+.+.. .-++..++-||..+-+..|+.. ...+...
T Consensus 126 ~fv~LAL~~I~niG~r-e~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~spDl~---~~~~W~~ 190 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSR-EMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSPDLV---NPGEWAQ 190 (938)
T ss_pred HHHHHHHHHHHhhccH-hHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCcccc---ChhhHHH
Confidence 5667788888887732 3333322 2233666655442 1677788888888888766633 2335678
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc-------------CCCHHHHHHHHHHHHHhh
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------------SEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~-------------~~~~~v~~~a~~~L~~L~ 277 (712)
.++.+|.+.+..+..++...+-.|+..+++....-... .+..|..+.. -+.|-++..++++|.++-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 99999999988888899999999987666543222111 1222322221 145677888888888773
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccC--Chh-----hHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHH
Q 005144 278 HSSPNIKKEVLAAGALQPVIGLLSSC--CSE-----SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (712)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~-----v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 350 (712)
.. ++......-...+..++...+.+ ... .+....+-.-+++.+-+.....+ ..++..|.+++.+..+.+|
T Consensus 270 ~~-~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 270 TP-EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred CC-CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccch
Confidence 22 12111111122344444444421 112 22233333444554333322223 2467888899999999999
Q ss_pred HHHHHHHHHHHH----HHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcccCcchhHHHH
Q 005144 351 EMSAFALGRLAQ----AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFI 407 (712)
Q Consensus 351 ~~a~~~L~~l~~----~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 407 (712)
.-++..++.|+. ...+... .+.++..|+ ..|..++..|+..|..+|.. +|...++
T Consensus 347 YLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV 406 (938)
T KOG1077|consen 347 YLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIV 406 (938)
T ss_pred hhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHH
Confidence 999999999888 2222222 677888886 78999999999999998854 4444443
No 138
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0071 Score=69.67 Aligned_cols=348 Identities=16% Similarity=0.110 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (712)
.-+..|+.-++.|+....-+..-.-...+|.|.+.--+++. .++. ++.-+++.-..++.....-.-..++.
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~--------~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDK--------KVQD-AMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcH--------HHHH-HHHHHHHHhccChHHHHHHHHHHHHH
Confidence 44566777777777332221111111235555555444433 5555 55566665543433222222234555
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhC--CCHHHHHHhhcCCCHHHHHHH---HHHHHHhhcCCh----
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEA---VGVIGNLVHSSP---- 281 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a---~~~L~~L~~~~~---- 281 (712)
-|+.-|.+....+|+.+|.+|..|..+.+. ..+.+. .....+.....+=...||..+ +.+|+.++....
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 666667778899999999999999975432 222221 223333344444456677664 445555543211
Q ss_pred -hHHHHHHHcCChHHHHH--hhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005144 282 -NIKKEVLAAGALQPVIG--LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (712)
Q Consensus 282 -~~~~~~~~~~~l~~L~~--lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 358 (712)
.-.+.++ ..++|.|++ ++ +.-.++|+.+..++..++.......... -...+|.|+.....-.+.+--+...-+.
T Consensus 1121 ~~~~~~~l-~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~~ 1197 (1702)
T KOG0915|consen 1121 GAKGKEAL-DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRLI 1197 (1702)
T ss_pred cccHHHHH-HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhhh
Confidence 1112221 224444442 22 4457899999999999986544322221 2466777777777766665443332224
Q ss_pred HHHH--------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHH
Q 005144 359 RLAQ--------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 430 (712)
Q Consensus 359 ~l~~--------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~ 430 (712)
|... .........+.+-.++..-|..+.+...--+..+.+..-+. ..-..|..
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl-------------------~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGL-------------------GTKVGCAS 1258 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC-------------------CcchhHHH
Confidence 4433 11122233455555555556555554444444443321110 00001100
Q ss_pred ---HHHHHHH---HhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchhhccCchHHHHHHhcCCCchhhh
Q 005144 431 ---KTLKRLE---EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQL 502 (712)
Q Consensus 431 ---~~l~~l~---~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~~~~L~~ll~~~~~~~~~ 502 (712)
....++. ..+.+..+..++...++.++.++..-+.+.+.|+.-.. .... .+..+...+.-+.+..+.
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----Lie~~l~~~l~k~es~~s 1333 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----LIETLLADLLGKDESLKS 1333 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHHHhccCCCccc
Confidence 0111111 12477888999999999999999999999999965433 2211 234444333334444445
Q ss_pred hhHHHHHhhhcccc
Q 005144 503 DGAVALFKLANKAT 516 (712)
Q Consensus 503 ~a~~~L~~L~~~~~ 516 (712)
.++..+.+++++..
T Consensus 1334 iscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1334 ISCATISNIANYSQ 1347 (1702)
T ss_pred hhHHHHHHHHHhhH
Confidence 56666666666543
No 139
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.49 E-value=0.00023 Score=59.01 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHHH
Q 005144 647 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 696 (712)
Q Consensus 647 ~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l~~ 696 (712)
|+.++.+|..|+...|.+.|.+|+.+||.++.++++|.++|.+.+..+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence 78999999999999999999999999999999999999997776555444
No 140
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.48 E-value=0.0067 Score=58.19 Aligned_cols=255 Identities=12% Similarity=0.134 Sum_probs=148.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHH-HHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhhh-
Q 005144 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ- 331 (712)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~- 331 (712)
++++.-++-.+..|+.++.++... ++.+.. ..+...-..+++++++. ..+++.....+++-++. ++.+.+.+-+
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 444444667889999999999766 444433 33444556777888764 57889999999999985 4555433322
Q ss_pred cCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhcc---CChhHHHHHHHHHHhcccCc
Q 005144 332 RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 332 ~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~ 400 (712)
.+.+..++++.+. ....|-+-+++.+.|++. ..+.-.+-+.+-++.|.. .+++++...-..=..|-.+.
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 2455666666654 345666777888888776 122222333444555522 24444332222211111111
Q ss_pred chhHHHHhhCccccccccch--h-hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhh-HHHHHHHHHHHhc-CCCc
Q 005144 401 DNVADFIRVGGVQKLQDGEF--I-VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLC-SPDD 475 (712)
Q Consensus 401 ~~~~~l~~~~~i~~L~~~~~--~-~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~-v~~~a~~~L~~l~-~~~~ 475 (712)
.....+- ..+..|..+.+ + .+....-....++.+. +-...++..|.++++..++. .-.-||.-+..+. ..++
T Consensus 314 k~l~~fD--~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~-kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 314 KKLCIFD--NYLNELDSGRLEWSPYHHKKDFWSTNLDMLI-KDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhHHH--HHHHHHhhCcccCCCcccccCchhhhHHHHh-hhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 1111110 01111111111 1 1122222233333332 12456788899999998776 3334555566664 4666
Q ss_pred ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 476 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 476 ~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
....+.+-|+-..+.++++++++++++.|..++..+....
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhh
Confidence 8888899999999999999999999999999998876543
No 141
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.055 Score=58.17 Aligned_cols=371 Identities=14% Similarity=0.131 Sum_probs=213.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
..+-+=|+++++-+|-.+++.|+.|-. + ++.+ ..+|.+...|.++++.||++|.-++..+-...+. .-
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE--~----ELle-pl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~ 169 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKE--P----ELLE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LI 169 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCc--H----HHhh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hc
Confidence 345566788999999988888887763 2 2332 3688888999999999999999999888643221 11
Q ss_pred cCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHHHH-HH
Q 005144 290 AGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQ-AG 364 (712)
Q Consensus 290 ~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~-~~ 364 (712)
..+-..+-..|. +.++..+++|...|... +++. ++..|.... .+-++..+-.....+...+. ..
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 223444444443 45778888887776653 2232 122232322 33445555555555555555 33
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhh
Q 005144 365 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 444 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 444 (712)
-.....+..+..+|.+.++.++..|+++|.+++..+..... .
T Consensus 239 ~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~--------------------------------------A 280 (948)
T KOG1058|consen 239 AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA--------------------------------------A 280 (948)
T ss_pred HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH--------------------------------------H
Confidence 34456688899999999999999999999999987765322 1
Q ss_pred HHHHHHHHhh-hhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccccCcccCC
Q 005144 445 LNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDA 523 (712)
Q Consensus 445 ~~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 523 (712)
...+++++.. ++-.++....--|..+.. .+..+ -.|.+.-+++++.+++-+++..+......|.....-.
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~i--l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve----- 351 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKI--LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE----- 351 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHH--HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH-----
Confidence 2234444333 344555555554544441 12222 2455677788999999999999988887777653211
Q ss_pred CCCCCCccccccHhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHH
Q 005144 524 APPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 603 (712)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~ 603 (712)
..-.++..++.++..- + ..++. -.|..|- +++- .-.++.|++-+..+..+++|+
T Consensus 352 -----div~~Lkke~~kT~~~-e---~d~~~---~yRqlLi------ktih--------~cav~Fp~~aatvV~~ll~fi 405 (948)
T KOG1058|consen 352 -----DIVQFLKKEVMKTHNE-E---SDDNG---KYRQLLI------KTIH--------ACAVKFPEVAATVVSLLLDFI 405 (948)
T ss_pred -----HHHHHHHHHHHhcccc-c---cccch---HHHHHHH------HHHH--------HHhhcChHHHHHHHHHHHHHh
Confidence 1112233444333221 0 01111 1222222 1111 114677888899999999998
Q ss_pred hcCCCCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCC----hhhHHHHHHHHHHcCcHHH-HHHHHHHHHHHHHHhh
Q 005144 604 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS----LENVSSMYELSEAFHAISL-RHTCILYIMEHFDKLS 678 (712)
Q Consensus 604 Y~~~~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~----~~~~~~~~~~a~~~~~~~l-~~~~~~~i~~~~~~v~ 678 (712)
=..+-....+-+.=+=++- =.+|.|+......|.+.+. ..-|-..++..-.|-...- ...|+..+.+.+.++-
T Consensus 406 sD~N~~aas~vl~FvrE~i--ek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp 483 (948)
T KOG1058|consen 406 SDSNEAAASDVLMFVREAI--EKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVP 483 (948)
T ss_pred ccCCHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 6554332222222111111 2347777777666655432 2333334444444433222 4566777766666553
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.01 Score=60.17 Aligned_cols=261 Identities=18% Similarity=0.158 Sum_probs=130.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-----ChhcHHHHHhCCCHHHHHH-------hhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 217 EFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTLIL-------MLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~-----~~~~~~~~~~~~~l~~L~~-------ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
...++.++..++.++..+..+ .|+..+.-...+.+..+.- .-.+..+.....+|.++.++..-..+.
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~- 383 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN- 383 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-
Confidence 356688888888888777531 1221111111121222111 001123445666777777775321110
Q ss_pred HHHHHcC---ChHHHHHhhccCCh-hhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005144 285 KEVLAAG---ALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (712)
Q Consensus 285 ~~~~~~~---~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 360 (712)
...| ..+.+..-..+... -++..|..++.-+.-+..-......-.++...+...+.++.-..|+.+.|+++|+
T Consensus 384 ---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 384 ---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred ---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 0010 11222222222222 2334444454444433222222233345566677777777888999999999999
Q ss_pred HHHHHHhc------------CChHHHHHhh---ccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhh
Q 005144 361 AQAGIAHN------------GGLVPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 425 (712)
Q Consensus 361 ~~~~~~~~------------~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 425 (712)
+...+... -.+..+.+.- ...+..|+.++..+|+|+..--+. +.+.+.
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~---i~~~~~-------------- 523 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP---IEKPTF-------------- 523 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH---hhhccH--------------
Confidence 88111111 1122222222 123477888888888887642111 111110
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCcc--cchhhccCchHHHHHHhcC-CCchhh
Q 005144 426 KDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGS-TNPKQQ 501 (712)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~~~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~~~~L~~ll~~-~~~~~~ 501 (712)
....++. +..+.. ..-.....||-+||.+++||..++.. +..-+..-..+.|..++.+ .|=.+|
T Consensus 524 -----------~e~~~~~-~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 524 -----------AEIIEES-IQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred -----------HHHHHHH-HHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 0001111 111111 12234567999999999999887653 2222333445777777765 777899
Q ss_pred hhhHHHHHh
Q 005144 502 LDGAVALFK 510 (712)
Q Consensus 502 ~~a~~~L~~ 510 (712)
..|+.+|..
T Consensus 592 i~AA~aL~v 600 (728)
T KOG4535|consen 592 IRAAAALSV 600 (728)
T ss_pred ehhhhhhcC
Confidence 999998854
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.33 E-value=0.037 Score=58.72 Aligned_cols=359 Identities=20% Similarity=0.172 Sum_probs=194.9
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
+|.++..|.+.... ...-...++.+|..+|.++..-..+.. ..+..+-...+.... .+....+
T Consensus 1 ~p~ll~~Lpd~~~~---------~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-------~~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSS---------TDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-------SDYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCc---------chhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-------hHHHHHH
Confidence 36677777666552 114677899999999977765444332 233333333322221 1566667
Q ss_pred HHHHHHHhhcCCcch-----hHHHhcCChHHHHHhhcC-----C--CHHHHHHHHHHHHHhhcCChhc-HHHHHhCCCHH
Q 005144 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKNDEN-KNQIVECNALP 252 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~lL~~-----~--~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~ 252 (712)
+.++.++........ ....+..+++.+.++... . ++.+...+..++..++..-+.. ++.+. .
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~ 138 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----D 138 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----H
Confidence 777777764333222 233444577888777632 1 2566666666666666533333 22232 2
Q ss_pred HHHHhhc----------C------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHH
Q 005144 253 TLILMLR----------S------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLL 315 (712)
Q Consensus 253 ~L~~ll~----------~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L 315 (712)
.+..++. . .......-...+++.+-.... . . -....+..++.+..+ .++..+..++..+
T Consensus 139 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~-~-~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 139 ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVS-L-P--DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccC-c-c--CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 2333222 0 111222333344544422111 0 0 111256666666554 3577888888888
Q ss_pred HHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHh-----cCChHHHHHhhccCChhHHHHH
Q 005144 316 GQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQAGIAH-----NGGLVPLLKLLDSKNGSLQHNA 389 (712)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~i~~L~~ll~~~~~~v~~~a 389 (712)
+.++...+.. ... .+++..+...+ ...++..+..+...+.-++...+.. ...+..|++++.+ +.+...+
T Consensus 215 a~LvNK~~~~--~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~a 289 (415)
T PF12460_consen 215 ASLVNKWPDD--DDL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQA 289 (415)
T ss_pred HHHHcCCCCh--hhH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHH
Confidence 8887431111 111 12334444433 3334444445554444444411111 1234556666655 7777888
Q ss_pred HHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 005144 390 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 469 (712)
Q Consensus 390 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~ 469 (712)
+.++.-|..+.+..-.-.....+..|. .+.+-..++|.|++..+..+...+.....+|.+
T Consensus 290 A~~f~il~~d~~~~l~~~~~a~vklLy--------------------kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 290 AKAFGILLSDSDDVLNKENHANVKLLY--------------------KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHhhHhcCcHHhcCccccchhhhHH--------------------hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 888888866522211111112222221 122334467777777777777788899999999
Q ss_pred hcCCCcccchhhc-cCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 470 LCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 470 l~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+...-+..-.+-+ ...+|.|++-+..++++++..+..+|..+..+.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9775553222222 346799999999999999999999999888765
No 144
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.32 E-value=0.0048 Score=66.79 Aligned_cols=241 Identities=17% Similarity=0.117 Sum_probs=169.8
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHH-Hhc-CChhhHHHHHhCCChHHHHHHHhccc
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLA-VKPEHQQLIVDNGALSHLVNLLKRHM 170 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~ 170 (712)
...-+...++.|+...|+.+.....+ +.+.....+|. .+. .+... ...++++.+.+....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDE 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhH
Confidence 56677778899999999999988877 77777778887 444 11111 123555555554332
Q ss_pred CCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh-CC
Q 005144 171 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN 249 (712)
Q Consensus 171 ~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~ 249 (712)
.. .+. -.++.++.|++..+...+..+...-+++.+-.++...++..+..++..+.||..+..-....+.+ ..
T Consensus 555 ~~------~en-~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~ 627 (748)
T KOG4151|consen 555 KG------LEN-FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKD 627 (748)
T ss_pred HH------HHH-HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Confidence 10 022 23677889999888888888888888888888888899999999999999999865555556666 44
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhh
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (712)
.++.....+..........++.++..++...+..+. ......+...+..++.+.+.+++......+.|+.....+....
T Consensus 628 ~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~ 707 (748)
T KOG4151|consen 628 RLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEK 707 (748)
T ss_pred CchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 566666666666677777778888767666666665 3334667888999999999999999999999877655555566
Q ss_pred hhhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005144 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 358 (712)
+.+...++.+..+-+-.....++.+..+|.
T Consensus 708 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 708 IFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 666666666666554444444555444443
No 145
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.32 E-value=0.00097 Score=53.56 Aligned_cols=67 Identities=28% Similarity=0.343 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhcHHHHHhC
Q 005144 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (712)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (712)
+...+.+|.|+|..++.++..+.+.|++|.++....- .+|-+++.|.++++||+.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999999999999999999999999998854 468999999999999999999998887763
No 146
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.056 Score=59.65 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=160.1
Q ss_pred hcCCCHHHHHHHH-HHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 216 LEFTDTKVQRAAA-GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 216 L~~~~~~v~~~a~-~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
+.+++...+..|+ .+++.++.|++ + ...++-+++...+.+.++++-.-.-|.+.+..+|+.+.. .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----m--ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----M--SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----h--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence 5565655555544 46667776544 1 124566677777889999998888888888887754333 456
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCCh
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGL 371 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i 371 (712)
.+..=+.++++.+|..|..+++.+-. ++.. ..+++.+.+++.++++.||+.|+.++.++-+ ....+.|.+
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 67777888999999999998887632 2222 2456899999999999999999999999997 566667788
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHh--hCccccccccchhhhhhhhHHHHHHHHHHHhh------hhh
Q 005144 372 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR--VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI------HGR 443 (712)
Q Consensus 372 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~--~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~------~~~ 443 (712)
..+..++.+.++.+..+|+.+|..+-.. ....+.. .-.++.+.-. .......+.....+..+.... ...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e--~a~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~le~L~~~~~~~~~s~~~ 245 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE--LAHGYSLEVILRIPQLDLL-SLSVSTEWLLLIILEVLTERVPTTPDSAED 245 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh--hhhhHHHHHHHHhhhccch-hhhhhHHHHHHHHHHHHHccCCCCCCcHHH
Confidence 8888888999999999999999988644 1111111 0111111100 000011222222333332211 223
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCC
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 496 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~ 496 (712)
....+.....+.++.+...++..+..+....+.... ..-.-+.|+.++..+
T Consensus 246 ~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~--~~~~~~~l~~Ll~~~ 296 (757)
T COG5096 246 FEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNL--FLISSPPLVTLLAKP 296 (757)
T ss_pred HHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccH--HHhhccHHHHHHcCC
Confidence 334444456667788877777766666543332221 222345666666655
No 147
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.23 E-value=0.00061 Score=48.70 Aligned_cols=55 Identities=36% Similarity=0.422 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
+.+|..|+++|++++...+....... ..+++.|+.+++++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999998865555444433 45899999999999999999999999875
No 148
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.034 Score=52.33 Aligned_cols=224 Identities=19% Similarity=0.230 Sum_probs=139.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
+..+.+...+++.......+.+|+.+.. ...++.++..+.+. .+-||..|..+|+.+. . ++
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh----
Confidence 4455555555555555666677766653 45788998888765 5778899999999985 2 22
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchh----hhhh--------hcCChHHHHHHhCC-CCHH-HHHH
Q 005144 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIV--------QRGAVRPLIEMLQS-PDVQ-LREM 352 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~--------~~~~l~~L~~ll~~-~~~~-v~~~ 352 (712)
.++.+-.+.+++..++++.+..++..+-..+.-.. .... ..+-+..+-..+.+ +.+. -|..
T Consensus 101 -----~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 101 -----SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred -----hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 56667777777778888887778877653221111 0000 01112233333322 2222 2334
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHH
Q 005144 353 SAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 432 (712)
Q Consensus 353 a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 432 (712)
+...|.|+.. ...+..|++-+...+.-.|..++..++.|-.
T Consensus 176 amF~LRn~g~-----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---------------------------------- 216 (289)
T KOG0567|consen 176 AMFYLRNIGT-----EEAINALIDGLADDSALFRHEVAFVFGQLQS---------------------------------- 216 (289)
T ss_pred hhhHhhccCc-----HHHHHHHHHhcccchHHHHHHHHHHHhhccc----------------------------------
Confidence 4444444211 1234455555666667777777777776632
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhh--hhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 433 LKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 433 l~~l~~~~~~~~~~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
...++.|.+.|.+. +|-||..|+.+|+.++. ...++.|.+.+.++.+-++..+..+|.-
T Consensus 217 ---------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 217 ---------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ---------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 12355666766655 78899999999999754 4678999999999999999888887765
Q ss_pred hh
Q 005144 511 LA 512 (712)
Q Consensus 511 L~ 512 (712)
+.
T Consensus 278 ~e 279 (289)
T KOG0567|consen 278 LE 279 (289)
T ss_pred HH
Confidence 44
No 149
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.19 E-value=0.32 Score=51.59 Aligned_cols=334 Identities=17% Similarity=0.124 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhh-----HH
Q 005144 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQ 151 (712)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~-----~~ 151 (712)
......+.+|+.++.++.....+.. ..+..+-..++.... .+....++.++.++. ...+. ..
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-----------~~~~~~il~tl~~~~~~~~~~~~~~~~~ 84 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-----------SDYCHAILSTLQSLLEKKQEDKQFEDNS 84 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHHhcccccccchHH
Confidence 4678899999999998776665532 344444444433322 156667777777776 22111 12
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc----------C---
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------F--- 218 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----------~--- 218 (712)
...+...++.+.++.......... .+..+...+..++..+...-+..++.-. +..+..+.. .
T Consensus 85 ~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 85 WYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred HHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccc
Confidence 223334677777776544332221 2236777777777777765444333222 233333332 1
Q ss_pred ---CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 219 ---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 219 ---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
.......-...+++.+-.+..-. .....+..++.+..+ .++..+..++.+++.+...-+.. ... ...+.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l-~~~l~ 232 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDL-DEFLD 232 (415)
T ss_pred cccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhH-HHHHH
Confidence 11122233334444443211111 111256666666544 46888999999888887542111 001 12333
Q ss_pred HHHHhh-ccCCh----hhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------
Q 005144 295 PVIGLL-SSCCS----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------- 362 (712)
Q Consensus 295 ~L~~lL-~~~~~----~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------- 362 (712)
.+...+ ..... ...+..+|+...+...+.... ...+..|+.++.+ +++...++.++.-+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~ 305 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN 305 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC
Confidence 333333 22222 333344455555443332222 2345778888876 6677788888877776
Q ss_pred -------HHHHhc----CChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHH
Q 005144 363 -------AGIAHN----GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 431 (712)
Q Consensus 363 -------~~~~~~----~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~ 431 (712)
+.+... ..++.|++-.+..+...+.+.+.+|.++-.+-.....+-+
T Consensus 306 ~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~----------------------- 362 (415)
T PF12460_consen 306 KENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE----------------------- 362 (415)
T ss_pred ccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-----------------------
Confidence 122222 2355566666666666888888888888665332111111
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 432 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 432 ~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
-..++|.|++.|..++++++..++.+|..+....
T Consensus 363 ---------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 363 ---------LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred ---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 2346888999999899999999999999987665
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.041 Score=59.47 Aligned_cols=280 Identities=15% Similarity=0.097 Sum_probs=134.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
..+.+-.++++....+...|+.++.++...++ ..+.. .+..|-.++.++.+.+|-.|.++|..++...|.... .
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-V 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-c
Confidence 44556667778888899999999998874222 22222 678888899999999999999999999876654210 0
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 005144 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAH 367 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (712)
. =.-|-.++.+.+..+...|..+|.. .+.+.+...+.+ -+..++.=+.+...-+...+..+|++..- ...
T Consensus 320 c----N~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~fp--~k~ 389 (865)
T KOG1078|consen 320 C----NLDLESLITDSNRSIATLAITTLLK--TGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKFP--RKH 389 (865)
T ss_pred c----chhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhcc--HHH
Confidence 0 0112233333333333333333322 233333333321 12222222222222222233333322221 111
Q ss_pred cCChHHHHHhhc-cCChhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHH-----hh
Q 005144 368 NGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE-----KI 440 (712)
Q Consensus 368 ~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~-----~~ 440 (712)
.+.+.-|.++|. ++..+-+.....++..+.. +++.+..- ++.|+....+- .-.......+..+.. ..
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~-----L~~LCefIEDc-e~~~i~~rILhlLG~EgP~a~~ 463 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERG-----LEHLCEFIEDC-EFTQIAVRILHLLGKEGPKAPN 463 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHH-----HHHHHHHHHhc-cchHHHHHHHHHHhccCCCCCC
Confidence 112222333331 1222233333333333322 22211110 00110000000 000001111111110 01
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 441 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 441 ~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
.+..+.......--.+..++..|..+|.++...... ......-.|.+++.+.+.++|..|..+|..+..
T Consensus 464 Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 464 PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 233344444444455778899999999999632221 122335677899999999999999999998883
No 151
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.13 E-value=0.00087 Score=47.91 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHH
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 318 (712)
+.+|..|+++|++++...++.... ....+++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998776665444 4466899999999999999999999999875
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0074 Score=61.10 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (712)
+..+..+|.++.++......+-..=...-.+-.+...-.+++.-++..|.++++-+.-+..-......-......+...|
T Consensus 363 ~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl 442 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL 442 (728)
T ss_pred CCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh
Confidence 45677788888888642111100000000111111122233455677777777766554322222222344556666777
Q ss_pred ccCChhhHHHHHHHHHHHhcC----Ccc---hhhhhhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHHHH--HHHHhc
Q 005144 301 SSCCSESQREAALLLGQFAAT----DSD---CKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQ--AGIAHN 368 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~--~~~~~~ 368 (712)
.+.....|..++|+++|++.. -+. ....+. .-.+..++... ...+..|+.++..+|+|+.+ +.+.+.
T Consensus 443 ~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~ 521 (728)
T KOG4535|consen 443 EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP 521 (728)
T ss_pred hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc
Confidence 777788999999999998732 122 111111 11122222222 12567899999999999999 333333
Q ss_pred CChHH----HHHhh----ccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh
Q 005144 369 GGLVP----LLKLL----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 440 (712)
Q Consensus 369 ~~i~~----L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~ 440 (712)
+.-+. +.+++ -.....|+-++|.+++||..++... +.. ..+
T Consensus 522 ~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~-----------lq~--------------------~~w 570 (728)
T KOG4535|consen 522 TFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP-----------LQT--------------------APW 570 (728)
T ss_pred cHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc-----------ccC--------------------CCc
Confidence 32211 22222 2346789999999999998876531 110 123
Q ss_pred hhhhHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCCc
Q 005144 441 HGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 441 ~~~~~~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~ 475 (712)
.+.+++.|..++.+. +..|+.+|+.+|..-....+
T Consensus 571 A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 571 ASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred hHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 455778888887766 88999999999988766554
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.48 Score=52.64 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=117.2
Q ss_pred hHHHHHHHHH-HHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHH
Q 005144 76 DRAAAKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (712)
+...+..|++ +++.++.+.+.-. ..|.+++.+.+.+. ++++..-.-|-+.+ ..|+....
T Consensus 32 n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~------------ElKrL~ylYl~~yak~~P~~~lL- 92 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDV------------ELKRLLYLYLERYAKLKPELALL- 92 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCH------------HHHHHHHHHHHHHhccCHHHHHH-
Confidence 4445666666 5666666655322 24667777775555 89988888888888 66643222
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 233 (712)
+++.+.+=+.++++ .++..|++.++.+-. ++ .....++++.+++.++++.||+.|+-++..
T Consensus 93 ----avNti~kDl~d~N~--------~iR~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~k 153 (757)
T COG5096 93 ----AVNTIQKDLQDPNE--------EIRGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAK 153 (757)
T ss_pred ----HHHHHHhhccCCCH--------HHHHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 35666666666665 899988888876642 21 223467899999999999999999999999
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
+=. -....+.+.|.+..+..++.+.+|.+..+|+.+|..+-
T Consensus 154 ly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 154 LYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 874 33445566788899999999999999999999999983
No 154
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.08 E-value=0.0034 Score=50.47 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
++.....+|+||+..++..+..+.+.|+++.++.... +.+|.++++|++++.+|+..+++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567789999999999999999999999999998754 468999999999999999999998766654
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.06 E-value=0.096 Score=52.93 Aligned_cols=204 Identities=14% Similarity=0.149 Sum_probs=146.5
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHH----HHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005144 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN----QIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 203 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~----~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (712)
+...+.+..|+..|..-+-+.+..++.+..++.......+. .......-..+..++.. +++++-..+...|....
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 44567888999999999999999999999999865443322 12222212333333322 35677778888888887
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhc---CChHHHHHHhCCCCHHHHHHHH
Q 005144 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA 354 (712)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~ 354 (712)
.. +...+.+.....+..+....+.++.++...|..++..+-.........++.. .++..+-.+|.+++.-+++.++
T Consensus 152 k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 152 KH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 65 7777888888889999999999999999999999998766555544444443 4667888889999999999999
Q ss_pred HHHHHHHH---------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHH
Q 005144 355 FALGRLAQ---------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 407 (712)
Q Consensus 355 ~~L~~l~~---------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 407 (712)
..|+.+.. ..+.+..-+..++.+|.+++..+|..|..+..-+..+|.....+.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 99999997 444455667889999999999999999999988877766544443
No 156
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00045 Score=69.88 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=111.5
Q ss_pred CccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHH---HHHHHHHHhChHh
Q 005144 553 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 629 (712)
Q Consensus 553 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~l~~~A~~~~~~~ 629 (712)
+..+.+|+.+++++++.|+.|+..+..+.....+.+.+.+++.++.+..|.|...-........ .++.++.+|+.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 6679999999999999999999888766666677888999999999999999976555445444 8888999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHH--HHHHhhCCchh
Q 005144 630 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH 683 (712)
Q Consensus 630 l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~--~~~~v~~~~~f 683 (712)
|+..|...+...+...++...+..+..++...+...|..++.. +++-+.+..++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999999999988888899999999999999999886 66666654444
No 157
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.03 E-value=0.0006 Score=55.22 Aligned_cols=87 Identities=25% Similarity=0.380 Sum_probs=65.9
Q ss_pred EEEEecCccchhhHHHhh-hcCHHHHHhccCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-CCCCCC-hhhHHHHHH
Q 005144 547 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 620 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~l~~ 620 (712)
|.+.++|+.|.+-+..|. ....+|..+++++ +.....+.+-+ +=+|+.|+.+++|+.+ +.+..+ ......+.+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 568899999999999998 5567899999864 33445567766 5699999999999999 666653 567889999
Q ss_pred HHHHhChHhH-HHHH
Q 005144 621 AADQYLLEGL-KRLC 634 (712)
Q Consensus 621 ~A~~~~~~~l-~~~c 634 (712)
-|++|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 5554
No 158
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.02 E-value=0.0031 Score=52.04 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=59.8
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCC-CCCceecCCCCHHHHHHHHHHHhcCCCC---------------
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD--------------- 609 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------- 609 (712)
+.+.. +|..|.+.+.+.. .|+.++.|+.+...+. ....|++++++...++.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 34443 6889999999775 9999999997543221 2258999999999999999999864321
Q ss_pred ----CChhhHHHHHHHHHHhCh
Q 005144 610 ----VTLDIAQDLLRAADQYLL 627 (712)
Q Consensus 610 ----~~~~~~~~l~~~A~~~~~ 627 (712)
++.+.+.+|+.||+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 344577888888888864
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.00 E-value=0.0015 Score=43.31 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=34.3
Q ss_pred hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc
Q 005144 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (712)
Q Consensus 94 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (712)
++++..+++.|+++.|++++.+++. +++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~------------~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDE------------EVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHc
Confidence 3467788999999999999997665 99999999999986
No 160
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.99 E-value=0.0028 Score=48.66 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=59.4
Q ss_pred cCccchhhHHHhhhcCHHHHHhccCCCC--CCCCCceecCCCCHHHHHHHHHHH-----hcCC------CCCChhhHHHH
Q 005144 552 EGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL 618 (712)
Q Consensus 552 ~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~~~~~~l 618 (712)
+|..|-..|-+ +.-|+-.++||+|++. |...+++.+++++...++.+.+|+ |++. .+++++.+.+|
T Consensus 25 Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 45666666654 5589999999998754 556679999999999999999997 5554 34789999999
Q ss_pred HHHHHHhC
Q 005144 619 LRAADQYL 626 (712)
Q Consensus 619 ~~~A~~~~ 626 (712)
+.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999975
No 161
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.3 Score=54.64 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=142.6
Q ss_pred HHHhhhhhhccccc------chHHhHHHHHHHHHHHHHhhc----ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCc
Q 005144 58 EVSAQVNVLNTTFS------WLEADRAAAKRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (712)
Q Consensus 58 ~v~~lv~~L~~~~~------~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~ 127 (712)
..+.+++++.+.+. .+..++....-|++.++++++ .+..+. ..+.=.++.+...++++..
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g--------- 476 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYG--------- 476 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchh---------
Confidence 34444444444443 334566677788898888875 122222 2233356777777788777
Q ss_pred ccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh-
Q 005144 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM- 205 (712)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~- 205 (712)
-+|.+|||.++.++ .+-. +...-..++....+.|.++..- .++..|+-+|..+..+.+.....+..
T Consensus 477 ---~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 477 ---YLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred ---HHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 89999999999999 2211 1111223456666666633322 88888999999888766554333321
Q ss_pred -cCChHHHHHhhcCCCHHHHHHHHHHH-HHhhcCChhcHHHHHhCCCHHHHHHhhcC---C---CHHHHHHHHHHHHHhh
Q 005144 206 -EGGIPPLVELLEFTDTKVQRAAAGAL-RTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLV 277 (712)
Q Consensus 206 -~~~i~~L~~lL~~~~~~v~~~a~~~L-~~L~~~~~~~~~~~~~~~~l~~L~~ll~~---~---~~~v~~~a~~~L~~L~ 277 (712)
.+.++.|+.+.+.-+.+....++..+ +..+..-......+.. .+...+.+++.. . +.+=...|.++|..+.
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 13333444455443333333333322 2222111111112221 244455555553 1 1222334444444432
Q ss_pred c------CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHH
Q 005144 278 H------SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (712)
Q Consensus 278 ~------~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 351 (712)
. ..++..+. ++...++++-.+|.+.-.+.-++++..+.+++...++....+. ++++.+.+.+.+...+--.
T Consensus 624 Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence 1 11211111 1234566666666666667777777777776654433333332 4455555555554444444
Q ss_pred HHHHHHHHHHH
Q 005144 352 MSAFALGRLAQ 362 (712)
Q Consensus 352 ~a~~~L~~l~~ 362 (712)
...-+|.|...
T Consensus 701 d~~~~l~N~vt 711 (1010)
T KOG1991|consen 701 DMMPALHNYVT 711 (1010)
T ss_pred HHHHHHhhhee
Confidence 55555555444
No 162
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.92 E-value=0.0013 Score=54.08 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHH
Q 005144 647 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 695 (712)
Q Consensus 647 ~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l~ 695 (712)
|+.++.+|..|+...|.+.|..|+.+||..+.++++|.+++.+.+..++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL 49 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLL 49 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHh
Confidence 5678999999999999999999999999999999999999766544433
No 163
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.89 E-value=0.0022 Score=42.44 Aligned_cols=38 Identities=45% Similarity=0.558 Sum_probs=34.7
Q ss_pred cchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 198 SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 198 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
..+..+.+.|+++.|++++.+++++++..++++|+||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35667889999999999999999999999999999997
No 164
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.13 Score=56.26 Aligned_cols=336 Identities=15% Similarity=0.181 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhH------HH
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR------VR 204 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~ 204 (712)
-+.-.+++.|..|+....+...+++.+++..|+.+-... +.......||+.+.. ....-+. .+
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~-~q~~mervc~~p~~v 436 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGS-LQGIMERVCALPLVV 436 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhh-hhhHHHHHhhccHHH
Confidence 355567778888887777888889999988776654322 334445566776664 2211111 12
Q ss_pred hcCChHHHHHhhcCCCHHHH------HHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC--------CC--------
Q 005144 205 MEGGIPPLVELLEFTDTKVQ------RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------ED-------- 262 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~------~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~-------- 262 (712)
...++..-+.++..+...-+ ..++..++.+. +.+-....+..|+.++++ .+
T Consensus 437 ~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail-------~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i 509 (1516)
T KOG1832|consen 437 IHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAIL-------DAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMI 509 (1516)
T ss_pred HHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHh
Confidence 22344444555654333222 23333333222 233334556666666542 11
Q ss_pred ---HHHHHHHHHHHHHhh-----cCChhHHHHHHHcCChHHHHHhhccC------ChhhHHHHHHHHHHHhcCCc-----
Q 005144 263 ---SAIHYEAVGVIGNLV-----HSSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDS----- 323 (712)
Q Consensus 263 ---~~v~~~a~~~L~~L~-----~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~----- 323 (712)
...-...|.+|..-. ..-+..++.-++.+..+..+.-+... +....++.+|-+..+....+
T Consensus 510 ~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~ 589 (1516)
T KOG1832|consen 510 SSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKA 589 (1516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhh
Confidence 112233444443322 12233344445555555555544322 23445556665555443333
Q ss_pred --chhhhhhhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHHHH-----HHHH-----h---cCChHHHHHhhc-
Q 005144 324 --DCKVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQ-----AGIA-----H---NGGLVPLLKLLD- 379 (712)
Q Consensus 324 --~~~~~l~~~~~l~~L~~ll~~--------~~~~v~~~a~~~L~~l~~-----~~~~-----~---~~~i~~L~~ll~- 379 (712)
.....+.+.+++..++++..- ...+....|+.+|+-+.. ..+. . ..|+..+++.-.
T Consensus 590 ~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 590 QWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred cchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccc
Confidence 122346667888888888742 234566677777765554 1111 1 124444444431
Q ss_pred --c-CChhHHHHHHHHHHhcc-cCcchhHHHHhhCccccccccchhhhhhh-hHHHHHHHHHH-HhhhhhhHHHHHHHHh
Q 005144 380 --S-KNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATK-DCVAKTLKRLE-EKIHGRVLNHLLYLMR 453 (712)
Q Consensus 380 --~-~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~-~~~~~~l~~l~-~~~~~~~~~~Lv~ll~ 453 (712)
+ .+++++..|+.+|.|+. ..|+++......-+-+.--.-.+.....+ +-+...+..+- .....+.+..|+++++
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~ 749 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQ 749 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHh
Confidence 2 37999999999999994 45566654332111000000011111111 11222333332 2336788999999998
Q ss_pred hhh-----hhHHHHHHHHHHHhcCCCcccchhhccC
Q 005144 454 VAE-----KGVQRRVALALAHLCSPDDQRTIFIDGG 484 (712)
Q Consensus 454 ~~~-----~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 484 (712)
-.. ..++..||++|.-|++++..++++.+.-
T Consensus 750 ~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 750 YKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred ccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 654 3578999999999999999877765543
No 165
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0084 Score=52.90 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=75.3
Q ss_pred cCccchhhHHHhhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCCCC---------------------
Q 005144 552 EGRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVD--------------------- 609 (712)
Q Consensus 552 ~~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------------- 609 (712)
+|..|.+-..+.. .|..+..++... ..... ..|+|+.|+...|..+++|+|..+-.
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 6788888887766 777777777532 22111 58999999999999999999985421
Q ss_pred ----CChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC---ChhhHHHHHHH
Q 005144 610 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYEL 653 (712)
Q Consensus 610 ----~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~ 653 (712)
++..++.+++.||+|+++++|...|...+...+ +++.....|.+
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I 141 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNI 141 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCC
Confidence 234688999999999999999999988887765 56655555443
No 166
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.17 Score=54.68 Aligned_cols=236 Identities=14% Similarity=0.187 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
+...+...++.+...+. +|.-+.. .+..+..+|.+.++ .|+..|+.+|.+++..|..-..
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~-- 279 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKA-- 279 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHH--
Confidence 33445555555665555 3443333 36778888888877 8888999999888877765433
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
+...+++++....+. .+....+.-|..+...+ ... -.|.+--+++.|.++|-+++..++.....|
T Consensus 280 ---Aa~~~i~l~~kesdn-------nvklIvldrl~~l~~~~---~~i--l~~l~mDvLrvLss~dldvr~Ktldi~ldL 344 (948)
T KOG1058|consen 280 ---AASTYIDLLVKESDN-------NVKLIVLDRLSELKALH---EKI--LQGLIMDVLRVLSSPDLDVRSKTLDIALDL 344 (948)
T ss_pred ---HHHHHHHHHHhccCc-------chhhhhHHHHHHHhhhh---HHH--HHHHHHHHHHHcCcccccHHHHHHHHHHhh
Confidence 245566666554442 33333334444443222 222 235556788889999999999999998888
Q ss_pred hcCChhcHHHHHhCCCHHHHHH-hhc------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhh
Q 005144 235 AFKNDENKNQIVECNALPTLIL-MLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~-ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 307 (712)
+.. .+...+. ..|-+ +.+ +.+..-|...+.++...+..-++.... +++.++..+.+.++..
T Consensus 345 vss--rNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 345 VSS--RNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAA 412 (948)
T ss_pred hhh--ccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHH
Confidence 752 2222221 11111 111 124467888899999988877765444 6888999999888776
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 005144 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 362 (712)
.......+.......+..+..+ +..++..+. -....+.+.++|.++.-+.
T Consensus 413 as~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 6666666666655445544433 455555553 2556677788888887776
No 167
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.75 E-value=0.37 Score=54.37 Aligned_cols=196 Identities=17% Similarity=0.228 Sum_probs=118.0
Q ss_pred HHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchh
Q 005144 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (712)
Q Consensus 100 ~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (712)
+.++|++..|+.++.+..... -..++....+..|..++.-+.+|+.+++.++++.|+..|...-.........
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~-------~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFS-------RGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred hhcCCCHHHHHHHHHhhcccc-------CcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence 446899999999997754311 1226677778888888888999999999999999999886322211100111
Q ss_pred HHHHHHHHHHHHHhhcCCc--c--hhHHH--------hcCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhcHH
Q 005144 180 SVIRRAADAITNLAHENSS--I--KTRVR--------MEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKN 243 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~--~--~~~~~--------~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~~~ 243 (712)
++.+..+.++..+...... . ..... ....+..+++.+.+ .++.+....+++|-+|+.++++..+
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 5555555555555432111 0 00001 11225666666654 3588999999999999998877766
Q ss_pred HHHhCCCHHHHHHhhc--CC-CHHHHHHHHHHHHHhhcCC------hhHHHHHHHcCChHHHHHhhccCCh
Q 005144 244 QIVECNALPTLILMLR--SE-DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCCS 305 (712)
Q Consensus 244 ~~~~~~~l~~L~~ll~--~~-~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (712)
.+++. +...+++=+ .. .++- ...+.+++.++..- ...+..+++.|++...++.|...-+
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 66543 222222111 11 1111 22245555554422 2467788889999988888875433
No 168
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.75 E-value=0.28 Score=49.66 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=140.4
Q ss_pred HHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHH----HHHhCCChHHHHHHHhcccCCc
Q 005144 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ----LIVDNGALSHLVNLLKRHMDSN 173 (712)
Q Consensus 99 ~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~----~~~~~~~l~~L~~lL~~~~~~~ 173 (712)
.+...|.+..|+..|..-+- +.|..++.+..++. ...+.+. ..+....-..+..++......
T Consensus 71 Ei~~~dll~~Li~~L~~L~f------------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~- 137 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDF------------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP- 137 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-H------------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST-
T ss_pred HHHHhCHHHHHHHHhhhCCC------------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc-
Confidence 45567899999999987766 89999999999988 3322221 122222234444444444432
Q ss_pred cccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhC---CC
Q 005144 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---NA 250 (712)
Q Consensus 174 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~ 250 (712)
++...+...|+..+. ++.....+.....+..+.+....++-++...|..++..+-.........+... ..
T Consensus 138 ------dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~f 210 (335)
T PF08569_consen 138 ------DIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRF 210 (335)
T ss_dssp ------TTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHH
T ss_pred ------cccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 566666666666665 66666677778888889999999999999999999998765555444444432 34
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 005144 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (712)
+.....++.+++--+++.++..|+.+....... .+.+-+..-+..++.+|++.+..++.+|.-+.--+.++
T Consensus 211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 211 FQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 566778899999999999999999998764432 23444566799999999999999999999888877764
No 169
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.72 E-value=0.1 Score=47.92 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHH
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l 341 (712)
++.+|.+++.+++.|+...+... ...++.+...|.++++.+|+.|+.+|..|...+--. .+..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 57899999999999987765433 336889999999999999999999999998643211 112234778888
Q ss_pred hCCCCHHHHHHHHHHHHHHHH
Q 005144 342 LQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (712)
+.+++++++..|..++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999988887
No 170
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.084 Score=57.56 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=144.4
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHH-HHhhcCCcchhHHHhcCChHHHHHhhcCCCHH-
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFTDTK- 222 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~- 222 (712)
.....+...+..|+...|+.+...... +-......+|. .+...... ....++.+...+......
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHH
Confidence 455566777888999999999877665 44444444444 22211111 113444454444332211
Q ss_pred HHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHHhhc
Q 005144 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (712)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~ 301 (712)
=...++.++.||+..+...+..+.....++.+-.++..+++..+..++..+.||..++.-....+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2356889999999877777877887777777778888899999999999999998875555566666 566777777777
Q ss_pred cCChhhHHHHHHHHHHHhcCCcchhh-hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.........++.++..++.....++. ...-......+..++.+.+++++...+....|+..
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 77777788888888877766666655 33345677889999999999999999999888665
No 171
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.15 Score=54.82 Aligned_cols=153 Identities=22% Similarity=0.219 Sum_probs=102.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
+.=+.+-+++.+.|+-+|.....++.---.+. .+.+++..|++. ..+.+.+||+.|+.+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 34456777888888888876655544211111 123567777776 66789999999999999999887773
Q ss_pred HHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--
Q 005144 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-- 362 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-- 362 (712)
++..+++|. +.++.||.-++.+|+-.|++. ..+ .++..|-.+.++...-||+.|+-++.-+..
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 556777776 458999999999999888653 222 234556666677788899998888877665
Q ss_pred -HH--HHhcCChHHHHHhhccCC
Q 005144 363 -AG--IAHNGGLVPLLKLLDSKN 382 (712)
Q Consensus 363 -~~--~~~~~~i~~L~~ll~~~~ 382 (712)
.. -.-.+..+.+.+.+..++
T Consensus 656 t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 656 TEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred ccccCchHHHHHHHHHHHhhhhh
Confidence 11 111233455666664443
No 172
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.3 Score=53.15 Aligned_cols=267 Identities=14% Similarity=0.096 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
.|...|++++.++. ..+..-. ..+..|--++.++.. .++-.|.++|..++..+|..-. .+-
T Consensus 260 mV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v~-----~cN 321 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAVT-----VCN 321 (865)
T ss_pred HHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 67778888888877 3332211 145555556665554 7777888888888876664321 122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
.-|-.+..+.+..+...|...|..- +.+.+...+... +..++.=+.++..-+...|..+|+... +.- .
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~f---p~k-----~ 389 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKF---PRK-----H 389 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhc---cHH-----H
Confidence 3455566666666665555555432 345555555543 555555566666666666777766653 211 1
Q ss_pred cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Q 005144 290 AGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGI 365 (712)
Q Consensus 290 ~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~ 365 (712)
.+.+..|..+|.+ +..+-++....++..+...+++.+.. ++..|+..+.+ .+...-+...|.-+.. ...
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccCCCCC
Confidence 2345566666653 35566677777777776655554432 33455555543 2233344455555544 222
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
.....+..+-+.+.=.+..++..|..+|.++....+. . ...+.
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--------l-----------------------------~~sI~ 505 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--------L-----------------------------LPSIL 505 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--------c-----------------------------cccHH
Confidence 2233445555555556778888888888888632221 0 11234
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
..|.+++.+.+.+++..|..+|.++-
T Consensus 506 vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 506 VLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 45677888888899999988888886
No 173
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.58 E-value=0.65 Score=43.42 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHH
Q 005144 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPP 211 (712)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~ 211 (712)
...|+..|.-++..|+.+..++....--.+-.+|...... ++.+-++..++++++.+...++ +.-..+...+++|.
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~---r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS---RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC---CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4466667777779999999999998777777777665443 3344888899999999996544 44556677899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh--------CCCH-HHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--------CNAL-PTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 212 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~~~l-~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
.++.+..+++..+..|..++..+.. ++.+...+.. ...+ ..+..+.+.+++.+.++++++..+|+. ++.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-npr 250 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPR 250 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHH
Confidence 9999999999999999999988885 4443222211 1122 233455667889999999999999974 465
Q ss_pred HHHHH
Q 005144 283 IKKEV 287 (712)
Q Consensus 283 ~~~~~ 287 (712)
.+..+
T Consensus 251 ar~aL 255 (293)
T KOG3036|consen 251 ARAAL 255 (293)
T ss_pred HHHHH
Confidence 55444
No 174
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.098 Score=53.74 Aligned_cols=250 Identities=18% Similarity=0.086 Sum_probs=134.2
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc--chhhhhhhcCCh
Q 005144 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAV 335 (712)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~l 335 (712)
..+++..+|..|++.|+|.+...|+........-+...+.++..+.+.+|..++..+|..+...-. +....+ .++.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~--l~ia 344 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL--LNIA 344 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc--hhHH
Confidence 356778899999999999998866654444333334444555566678999999998887763211 111112 2344
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHh--cCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHH
Q 005144 336 RPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 406 (712)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 406 (712)
-.+..+..+.++++|.++...++.|+. ..+.+ .+...+|.--+.+.++.+..++-..+.-+.-+ -.+...
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~-l~rke~ 423 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN-LVRKEL 423 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch-hHHHHH
Confidence 566777788999999999999999988 22221 22233344445666676655544444433222 111111
Q ss_pred HhhCcccccccc---chhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchhh
Q 005144 407 IRVGGVQKLQDG---EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFI 481 (712)
Q Consensus 407 ~~~~~i~~L~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~ 481 (712)
.+.++...+. .+..-....|.- +.....-+-.-.......++.+..+.++..+...-.++..+-. .+...-
T Consensus 424 --~~~~q~~ld~~~~~~q~Fyn~~c~~--L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d 499 (533)
T KOG2032|consen 424 --YHLFQESLDTDMARFQAFYNQWCIQ--LNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSAD 499 (533)
T ss_pred --HHHHhhhhHHhHHHHHHHHHHHHHH--HhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1122211111 011111111100 1111000011111222334445556677766665555533222 222211
Q ss_pred ccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 482 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 482 ~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
-.-....|..+..++-++++..|..|+..+...
T Consensus 500 ~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 500 GLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 122346778888899999999999999877653
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.49 E-value=0.0047 Score=51.07 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 441 HGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 441 ~~~~~~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+..++..|+.+| .+.++.+..-||.=|+.++...+ ++.++.+.|+-..+.+++.++|++||+.|..++..|..+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 456788999999 45588888889999999977544 7888878899999999999999999999999999887654
No 176
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.48 E-value=0.095 Score=45.98 Aligned_cols=131 Identities=13% Similarity=0.211 Sum_probs=98.8
Q ss_pred hHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC--CHHHHHH
Q 005144 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRA 226 (712)
Q Consensus 149 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~ 226 (712)
+...++..+|+..|++++.+....... ..++...++.++..+..+. ...-......++..++.+...+ +..+...
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~--~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPC--KGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcc--hHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHH
Confidence 345678889999999999887631100 1277888899999888643 3222344556777888887654 5889999
Q ss_pred HHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
++..|-+++..++.....+.+.=-++.|+..++..+++++.+++..+-.|....++
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999999986666666777766799999999999999999999988888765444
No 177
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.45 E-value=0.044 Score=48.03 Aligned_cols=133 Identities=13% Similarity=0.196 Sum_probs=100.5
Q ss_pred HHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCcccc
Q 005144 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (712)
Q Consensus 97 ~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 176 (712)
...+++.||++.|+++++++.. +.+...++...++.++..|.+..-..-..+...++..++.++.....
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~------~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~----- 72 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE------IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM----- 72 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc------cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc-----
Confidence 3567889999999999988764 11122377888999999988433323345566678888888875542
Q ss_pred chhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhc
Q 005144 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241 (712)
Q Consensus 177 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~ 241 (712)
+..+...++..|-++...++.....+.+.--++.|+..|+.++++++.++...+..|-...++.
T Consensus 73 -d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 73 -DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred -cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 1289999999999999867766777777778899999999999999999999888886544443
No 178
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.44 E-value=0.078 Score=48.77 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCCh-HHHHHhhccC
Q 005144 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGL-VPLLKLLDSK 381 (712)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i-~~L~~ll~~~ 381 (712)
++.+|..+..+++.++...+.... ..++.+...|+++++.||+.|+.+|..|.. ..+.-.|-+ ..+..++.+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 467899999999999975554332 456899999999999999999999999998 333223333 7788888999
Q ss_pred ChhHHHHHHHHHHhcccC
Q 005144 382 NGSLQHNAAFALYGLADN 399 (712)
Q Consensus 382 ~~~v~~~a~~~L~~l~~~ 399 (712)
+++|+..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999765
No 179
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.41 E-value=0.39 Score=44.81 Aligned_cols=151 Identities=10% Similarity=0.080 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhCC
Q 005144 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (712)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~ 157 (712)
...|+..|--++++|+.|..+.+..+--.|-.+|...+... ...-+|..++..++.+. ++.+.-..+...+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r-------~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSR-------PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCC-------chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 56677778888889999999999987778888887655421 23378999999999999 6777788888999
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchh------HHHh-cCCh-HHHHHhhcCCCHHHHHHHHH
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGI-PPLVELLEFTDTKVQRAAAG 229 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i-~~L~~lL~~~~~~v~~~a~~ 229 (712)
++|..++.+...+. .....|..++..+..++....- .+.. ...+ ..+..+.+.+++.+.+.+.+
T Consensus 169 IVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 169 IVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred hHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999988776 6666777787777654432211 1111 1122 23344556688999999999
Q ss_pred HHHHhhcCChhcHHHHH
Q 005144 230 ALRTLAFKNDENKNQIV 246 (712)
Q Consensus 230 ~L~~L~~~~~~~~~~~~ 246 (712)
+..+|+ +++..+..+.
T Consensus 241 cYlrLs-dnprar~aL~ 256 (293)
T KOG3036|consen 241 CYLRLS-DNPRARAALR 256 (293)
T ss_pred HHHHhc-CCHHHHHHHH
Confidence 999999 4665555443
No 180
>PRK14707 hypothetical protein; Provisional
Probab=96.37 E-value=1.1 Score=54.46 Aligned_cols=277 Identities=17% Similarity=0.165 Sum_probs=147.7
Q ss_pred hhhhcccccchHHhHHHHHHHHHHH-HHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHH
Q 005144 63 VNVLNTTFSWLEADRAAAKRATHVL-AELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (712)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (712)
+.++...++.+..+.. ...++..| .-++.++..+..+-..|+...|=.+-+.++. +..+..+...-.
T Consensus 165 ~~lllNafSKw~~~~~-c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sKWp~~-----------~~c~~aa~~la~ 232 (2710)
T PRK14707 165 ISLALNAFSKWSDNPD-CQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCKWPDT-----------PDCGNAVSALAE 232 (2710)
T ss_pred HHHHHHHhhcCCCCch-HHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHH
Confidence 3344444554444443 44444444 4444556666555444444444444445544 144444444444
Q ss_pred HhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH
Q 005144 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (712)
Q Consensus 142 ~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 221 (712)
.++.....+..+- ...+...++-|..-.+. .....++..|..-...++..+..+-..++-..|-.+.+.++.
T Consensus 233 ~l~~~~~l~~~~~-~q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~ 304 (2710)
T PRK14707 233 RLADESRLRNELK-PQELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADL 304 (2710)
T ss_pred HHcCcHHHHHhCC-hHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCc
Confidence 4556655554433 33455556666554442 566666666644433455555554444444455555567777
Q ss_pred HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc
Q 005144 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (712)
.+...|+..|..=..+++.....+-..++-..|-.+-+=++..+...|+..|..=...+++.++.+- ..++...++-+.
T Consensus 305 ~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNals 383 (2710)
T PRK14707 305 PVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALS 383 (2710)
T ss_pred hHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhh
Confidence 7777666666644445555554443333333333333335555555555555444445566666554 444555555554
Q ss_pred -cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHH
Q 005144 302 -SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 302 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~ 361 (712)
=++..+...++..|..-..++.+.+..+-..|+ ...++.| +=++..+...++.+|..-.
T Consensus 384 KWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~~l 444 (2710)
T PRK14707 384 KWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAGRL 444 (2710)
T ss_pred cCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHHHH
Confidence 346677777777777665566676666655554 4444555 4477777777776665433
No 181
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.82 Score=52.44 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-chhhhhhhcCChHH
Q 005144 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRP 337 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~ 337 (712)
.+..+|..+...|..++.. +.......+ ..+...|.+-+++.+...+...+.+|..+....+ +... ++..-+.+.
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~-~i~k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD-LIPKLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence 4678999999999999876 222111111 2233444455555566677777777777664433 2222 222233334
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcC------ChHHHHHhhccC--ChhHHHHHHH--HHHhcccCcchhHHH
Q 005144 338 LIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNG------GLVPLLKLLDSK--NGSLQHNAAF--ALYGLADNEDNVADF 406 (712)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~------~i~~L~~ll~~~--~~~v~~~a~~--~L~~l~~~~~~~~~l 406 (712)
++.+ +..+...++.+..+|..++. ....+.| .+..++..+... ....+..+.. ++..+.... ..+
T Consensus 744 IL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~---~~~ 819 (1176)
T KOG1248|consen 744 ILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF---KNI 819 (1176)
T ss_pred HHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH---hcc
Confidence 4444 88889999999999999885 2222222 334444444332 2222222221 111111100 000
Q ss_pred HhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCc
Q 005144 407 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGG 485 (712)
Q Consensus 407 ~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~ 485 (712)
+...+-.+++..+..++.+.++++...|++.+..++...+ ..-.......
T Consensus 820 -----------------------------ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L 870 (1176)
T KOG1248|consen 820 -----------------------------LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL 870 (1176)
T ss_pred -----------------------------ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence 0111223456667778888999999999999999977655 3322234456
Q ss_pred hHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 486 LELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 486 ~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
++.+..++.+..-.++...-..+-.|.+...
T Consensus 871 L~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 871 LPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 7888888888777888888777777777653
No 182
>PRK14707 hypothetical protein; Provisional
Probab=96.27 E-value=2.6 Score=51.57 Aligned_cols=304 Identities=19% Similarity=0.179 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHH-hhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHH-HHhcCChhhHHHH
Q 005144 76 DRAAAKRATHVLAE-LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL-GLLAVKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L-~~l~~~~~~~~~~ 153 (712)
+..+...|+..|+. +..+++.+..+-..++-..|=.+-+.++. .+...|+.+| ..++.+++.+..+
T Consensus 303 d~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~------------~~C~~Aa~~LA~rl~~d~~l~~~l 370 (2710)
T PRK14707 303 DLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDN------------PVCAAAVSALAERLVADPELRKDL 370 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHhccCHhhhccc
Confidence 34445555554444 33355555444333333333333344444 3444444444 5555777777665
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 233 (712)
-.. ++...++-|..-.+. ...+.++..|..-..++++.+..+-..|+-..|-.+.+-++..+...++..|..
T Consensus 371 ~~q-~~a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 371 EPQ-GVSSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred chh-HHHHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 433 455555555554443 777777777766666688888777777777777777788888888888888876
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCCh-hhHHHHH
Q 005144 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAA 312 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~ 312 (712)
-..++.+-.+.+--.++...|-.+-+=++..+-..++..|..=...+.+.++.+--.++...|-.+-+-++. ...+.+.
T Consensus 443 ~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~ 522 (2710)
T PRK14707 443 RLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAAS 522 (2710)
T ss_pred HHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 665566666555544444444444444565566566665554444445554444333333333333333443 3334444
Q ss_pred HHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhcc-C-Chh
Q 005144 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDS-K-NGS 384 (712)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~-~-~~~ 384 (712)
|+.+.+.. .... ...+...-+..+++.+ +.++....+.+...|..+.. ....+...+..+++.++. + ...
T Consensus 523 ~lA~rl~~-~~~l-~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~a 600 (2710)
T PRK14707 523 ALAERVVD-ELQL-RKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAV 600 (2710)
T ss_pred HHHHHhcc-chhh-hhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHH
Confidence 44444442 2222 2222222233444444 44566666666655555433 223334456666666632 3 344
Q ss_pred HHHHHHHHHHhcccCcc
Q 005144 385 LQHNAAFALYGLADNED 401 (712)
Q Consensus 385 v~~~a~~~L~~l~~~~~ 401 (712)
.+..+.+.-..+...+.
T Consensus 601 C~~Aa~~LA~~l~~~~~ 617 (2710)
T PRK14707 601 CAEAVNALAERLVDEPD 617 (2710)
T ss_pred HHHHHHHHHHHhccChh
Confidence 44445444455544443
No 183
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=96.27 E-value=0.29 Score=49.06 Aligned_cols=242 Identities=16% Similarity=0.143 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhHH-HHHHHcCC
Q 005144 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGA 292 (712)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~ 292 (712)
++..+...++++|+|+..++...+....+......+++.+... ...+...-++.|.-++.-..+.+ +.+.+.+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3457889999999999998888888887776666666655321 12344444555555544444544 44556899
Q ss_pred hHHHHHhhccC---Ch------------hhHHHHHHHHHHHhcCCcch-h-hhhhhc----CChHHHHHHh--CCCCHHH
Q 005144 293 LQPVIGLLSSC---CS------------ESQREAALLLGQFAATDSDC-K-VHIVQR----GAVRPLIEML--QSPDVQL 349 (712)
Q Consensus 293 l~~L~~lL~~~---~~------------~v~~~a~~~L~~l~~~~~~~-~-~~l~~~----~~l~~L~~ll--~~~~~~v 349 (712)
++.+.+++++. ++ ....++..++.|++...... + ..-... ++...++..+ ...+.++
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~el 268 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEEL 268 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999752 11 23445667788877543211 1 111111 1112222222 1222333
Q ss_pred HHHHHHHHHHHHH----------------HHH--HhcCChHHHHHhhcc---------CChhHHHHHHHHHHhcccCcch
Q 005144 350 REMSAFALGRLAQ----------------AGI--AHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 350 ~~~a~~~L~~l~~----------------~~~--~~~~~i~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
-..+..-|.|.-. +.+ .+..-.+.+..+|.. ...+...-.+..|..+|+....
T Consensus 269 hshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~ 348 (532)
T KOG4464|consen 269 HSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV 348 (532)
T ss_pred hhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH
Confidence 3333333332222 111 112223344444421 1245566778888899999999
Q ss_pred hHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcc
Q 005144 403 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 476 (712)
Q Consensus 403 ~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~ 476 (712)
.+.+.+..++++|.+....+.... .+=..++.+|...+..++.-|+..|.-|+...-+
T Consensus 349 ~Rkylr~qVLPPLrDV~~RPEvg~----------------tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~ 406 (532)
T KOG4464|consen 349 MRKYLRQQVLPPLRDVSQRPEVGQ----------------TLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVN 406 (532)
T ss_pred HHHHHHHhcCCchhhhhcCcchhH----------------HHHHhhHhheeccchhhhhhhHHHHHHHhhcchh
Confidence 999999999999876544333322 2345688888888888999999888888765433
No 184
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.34 Score=52.32 Aligned_cols=157 Identities=18% Similarity=0.109 Sum_probs=106.9
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQAGIAHNGG 370 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (712)
+=+.+-+++.+.++-+|.....++.---.+... .+++..|++. .++.+.+||++|.-+|+-++. .+...
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~---~dp~~ 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---RDPEQ 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEe---cChhh
Confidence 445566777777888888777765532222111 3566777777 477899999999998877665 33345
Q ss_pred hHHHHHhh-ccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHH
Q 005144 371 LVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 449 (712)
Q Consensus 371 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv 449 (712)
.+..+.+| .+.++.||..++.+|+-.|....+... +..|-
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA---------------------------------------i~lLe 630 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA---------------------------------------INLLE 630 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH---------------------------------------HHHHh
Confidence 66778888 567899999999999877765444222 33345
Q ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCc---ccchhhccCchHHHHHHhcCCCchh
Q 005144 450 YLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQ 500 (712)
Q Consensus 450 ~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~~~~L~~ll~~~~~~~ 500 (712)
++..+...-||..|+.+++.+..... +.+ -.+..+.+.+++.+++++.
T Consensus 631 pl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk---v~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 631 PLTSDPVDFVRQGALIALAMIMIQQTEQLCPK---VNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHhcccccCch---HHHHHHHHHHHhhhhhhHH
Confidence 56667777889999998888743222 322 2456688889999888874
No 185
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.17 E-value=0.65 Score=44.34 Aligned_cols=223 Identities=11% Similarity=0.103 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhc-CChhhHHHHHh-CCChHHHHHHHhcccCCcc----ccchhHHHHHHHHHHHHHhhcCCcchhHH
Q 005144 130 HEVEKGSAFALGLLA-VKPEHQQLIVD-NGALSHLVNLLKRHMDSNC----SRAVNSVIRRAADAITNLAHENSSIKTRV 203 (712)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 203 (712)
++.|+.|+.-|+.-- ..++..-.+-. .|.+..|++=+-+..+.-. ......-..+++..|..++. +++.+..+
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 477888888777776 44554443333 3444444433322211100 11112344566777777777 88889999
Q ss_pred HhcCChHHHHHhhcCCC-----HHHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 204 RMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 204 ~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
.+..+.-.|..+|+..+ +.+|..++++++.|+.. +++....+.+.+++|..++.+..++.-.+.-|..++..+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99888888888886543 56899999999999973 3345666778999999999999998888888888888887
Q ss_pred cCChhHHHHHHH--------cCChHHHH-HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-----
Q 005144 278 HSSPNIKKEVLA--------AGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----- 343 (712)
Q Consensus 278 ~~~~~~~~~~~~--------~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~----- 343 (712)
.++.. -..+.. ..++..++ .+..++++.+.+....+-..++. ++..+..+.. .+| ..|+
T Consensus 168 ~dd~G-L~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP---~~Lrd~~f~ 240 (262)
T PF04078_consen 168 LDDVG-LNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLP---DQLRDGTFS 240 (262)
T ss_dssp HSHHH-HHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS----GGGTSSTTT
T ss_pred cchhH-HHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCc---HHHhcHHHH
Confidence 55322 111110 12333333 33456688899999999988875 5555554432 222 1222
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q 005144 344 ---SPDVQLREMSAFALGRL 360 (712)
Q Consensus 344 ---~~~~~v~~~a~~~L~~l 360 (712)
..|+.++..-...+.|+
T Consensus 241 ~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 241 NILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TGGCS-HHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 24677776666655554
No 186
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.15 E-value=0.02 Score=56.13 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=72.5
Q ss_pred HhhhcCCC--cccEEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCCh
Q 005144 536 DQFVNNAT--LSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 612 (712)
Q Consensus 536 ~~~~~~~~--~~D~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~ 612 (712)
..+.+++. +.|+.+.. .|+.|.+|++.|++||.+|..-+..-|. +.++|.-..+-++.|..++.|+|-..-..-.
T Consensus 139 s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~ 216 (516)
T KOG0511|consen 139 SSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWK 216 (516)
T ss_pred HHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhh
Confidence 33444433 45777765 5899999999999999988765544432 2335655567899999999999988555666
Q ss_pred hhHHHHHHHHHHhChHhHHHHHH
Q 005144 613 DIAQDLLRAADQYLLEGLKRLCE 635 (712)
Q Consensus 613 ~~~~~l~~~A~~~~~~~l~~~c~ 635 (712)
++..+|+.+..+|+++.|-...+
T Consensus 217 ~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 217 DQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hHHHHHHhhhhhccHHHhHHHHh
Confidence 77789999999999888766553
No 187
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.14 E-value=0.035 Score=44.71 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHH--hcCChHHHHHhhccCC
Q 005144 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIA--HNGGLVPLLKLLDSKN 382 (712)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~--~~~~i~~L~~ll~~~~ 382 (712)
|+.+..+|..++.+-........ ..+++.++..+.++++.||..|+.+|.|++. ..+. -....+.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45566666666543333322222 4678999999999999999999999999998 2222 2456677888888899
Q ss_pred hhHHHHHHH
Q 005144 383 GSLQHNAAF 391 (712)
Q Consensus 383 ~~v~~~a~~ 391 (712)
+.|+..|..
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 998887743
No 188
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=4.5 Score=48.01 Aligned_cols=142 Identities=12% Similarity=0.168 Sum_probs=87.4
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
....++.+...+.. +-..+|-.|+++|..+.. +|.... ....-..+-.-+.+... .||+.|+
T Consensus 814 fD~yLk~Il~~l~e--~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~Dssa------------sVREAal 876 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGE--NAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSA------------SVREAAL 876 (1692)
T ss_pred hHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchh------------HHHHHHH
Confidence 33344444444443 356689999999999987 543321 11112222233334444 7999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
..+|... ..++...... ..+..-+.+... .|+..++.+++.+|...|....+ ...+.+++
T Consensus 877 dLvGrfvl~~~e~~~qyY-----~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~i------~~~cakml 937 (1692)
T KOG1020|consen 877 DLVGRFVLSIPELIFQYY-----DQIIERILDTGV--------SVRKRVIKILRDICEETPDFSKI------VDMCAKML 937 (1692)
T ss_pred HHHhhhhhccHHHHHHHH-----HHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhhH------HHHHHHHH
Confidence 9999887 6666543322 233333333333 89999999999999877776542 33555555
Q ss_pred c---CCCHHHHHHHHHHHHHhhc
Q 005144 217 E---FTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 217 ~---~~~~~v~~~a~~~L~~L~~ 236 (712)
. ++...++..++.++.++..
T Consensus 938 rRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 938 RRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHhccchhHHHHHHHHHHHHHhc
Confidence 4 2333488888888888875
No 189
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.05 E-value=0.23 Score=47.26 Aligned_cols=205 Identities=13% Similarity=0.155 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHhhcC-hhhHHHHHh-cCCHHHHHhhhcCCCCCccccCCCcccH---HHHHHHHHHHHHhcCChhhH
Q 005144 76 DRAAAKRATHVLAELAKN-EEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEH---EVEKGSAFALGLLAVKPEHQ 150 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~~~~~~~~---~v~~~a~~~L~~l~~~~~~~ 150 (712)
+++.++.|+..|..--.. ++..-.+.. .|.+..|++=+-+..+.. .|+...+ .-...|+..+..++.+|+.|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l---~~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPAL---SPPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGT---TTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccC---CCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 345678888777766553 555544544 566666543322211100 1122222 22334555556667999999
Q ss_pred HHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhc-CCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 005144 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (712)
Q Consensus 151 ~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 229 (712)
..+++....-.|-.+|+..+.. ++.+.++..++++++.+... +++.-..+...+.+|..++.+..++.-.+..|..
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~---r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtf 161 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKT---RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATF 161 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----S---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccc---cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHH
Confidence 9999999888888888665542 33447888899999999863 3445566778899999999999998888888888
Q ss_pred HHHHhhcCChhcHHHHHh--------CCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 230 ALRTLAFKNDENKNQIVE--------CNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~--------~~~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
++..+.. ++.+...+.. ..++..++ .+.+++++.+.++.+++-..|+.. +..+..+.
T Consensus 162 IlqKIL~-dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~ 227 (262)
T PF04078_consen 162 ILQKILL-DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALR 227 (262)
T ss_dssp HHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred HHHHHHc-chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHH
Confidence 8888875 4433222211 11233333 345677899999999999999754 55555443
No 190
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.01 E-value=0.042 Score=44.28 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhc
Q 005144 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS 301 (712)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~ 301 (712)
|..++.+|...+..-+.......+ .+++.++..+.+++..||..|+.+|.|++... +..+.. ..+++.|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 445666666666544444444443 37899999999999999999999999997543 233332 557788888888
Q ss_pred cCChhhHHHHHHHHHHH
Q 005144 302 SCCSESQREAALLLGQF 318 (712)
Q Consensus 302 ~~~~~v~~~a~~~L~~l 318 (712)
+.++.++..| ..|-++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 8888876665 444443
No 191
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.99 E-value=0.17 Score=54.13 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=98.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.++...+ ++...+..|+..+.......|+..+. ++..+++++.+++..||..|+..|..+|..+++....
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---- 96 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---- 96 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH----
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH----
Confidence 3444444 56888999999999888777766544 4678999999999999999999999999988877666
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC---CCCHHHHHHHHHHHHHHHH-----
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQ----- 362 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~----- 362 (712)
+.++|.++|..+++.-...+-.+|..+...++. +.+..+...+. +.+..+|+.+...|..=..
T Consensus 97 -vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 97 -VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp -HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 467899999988776666666666666543332 22333333332 4677788887766643222
Q ss_pred --H--HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 363 --A--GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 363 --~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
. .-.+.-.+..+.++|.+-..+--.....+|..+..
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 1 22222333444555544333333344455666543
No 192
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.98 E-value=0.31 Score=49.12 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=101.2
Q ss_pred CHHHH-HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-chhh
Q 005144 250 ALPTL-ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKV 327 (712)
Q Consensus 250 ~l~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~ 327 (712)
.+..| ...+++.++.+|..++.+||-.+--+...... .++.+...++.++..++..|+.++..+..... ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 34444 37788899999999999999998876654333 57778888877789999999999998874321 1111
Q ss_pred h-------hhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHh-cCChHHHHHhhcc----CChhHHHHHHHHHH
Q 005144 328 H-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAH-NGGLVPLLKLLDS----KNGSLQHNAAFALY 394 (712)
Q Consensus 328 ~-------l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~-~~~i~~L~~ll~~----~~~~v~~~a~~~L~ 394 (712)
. .....++..+.+.+.+.+++++..++..++.|.. ..+.+ ...+..|+-+-.+ .+..++..-...+-
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 1 1224567788888888899999999999999888 33333 3444444444322 34566666666666
Q ss_pred hcccCcc
Q 005144 395 GLADNED 401 (712)
Q Consensus 395 ~l~~~~~ 401 (712)
..+....
T Consensus 182 ~y~~s~~ 188 (298)
T PF12719_consen 182 VYASSSP 188 (298)
T ss_pred HHHcCCH
Confidence 6665433
No 193
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.98 E-value=0.0073 Score=58.90 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=73.7
Q ss_pred ccchhhHHHhhhcCHHHHHhccCCCCC-CCCCceecC-CCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhChHhHH
Q 005144 554 RRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 631 (712)
Q Consensus 554 ~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l~~~A~~~~~~~l~ 631 (712)
+.|.|.+.+|...=.||+..++....+ ...++|+|. .-+-..|+=++.|++.....+++.|+..++.-|++++|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 679999999999999999999652211 222345554 347889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 005144 632 RLCEYTIAQDI 642 (712)
Q Consensus 632 ~~c~~~l~~~~ 642 (712)
+.|..|+.+++
T Consensus 94 e~cl~y~~~~~ 104 (317)
T PF11822_consen 94 EECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHhH
Confidence 99998886654
No 194
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.8 Score=48.74 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=90.2
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhc---CCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
.+.++.+++++.+....+.+..+..-...|+.++++++.. ....+ ...+.-.++.+...++++..-+|..|||++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 3567788888875544433333445667788888888732 22222 2333445567777788888899999999999
Q ss_pred HhhcCChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhccC
Q 005144 233 TLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSC 303 (712)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~~ 303 (712)
.++.-+-.....+ ..++....+.+. +.+-.|+..|+-+|..+....+.....+.. .+.++.|+.+.+.-
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 9994222222222 235677777777 667789999999999998765543222221 23444455555443
No 195
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.95 E-value=0.12 Score=49.65 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll 258 (712)
..+..|+.+|.-+|--+++.+..+.....+..++.+|. ...+.++.+++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 45677889999999889999999999999999999994 45689999999999999989999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhhcC
Q 005144 259 RSE--DSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 259 ~~~--~~~v~~~a~~~L~~L~~~ 279 (712)
++. +.+++..++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 885 578888888877666543
No 196
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.32 Score=53.45 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH-
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV- 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 154 (712)
|....-.+++.|+.++.+......+++.|+|..|+.+=.-+ +.-.....+|..|.........+.
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s--------------~~~~g~s~cly~~~~~q~~mervc~ 431 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS--------------ETFYGLSSCLYTIGSLQGIMERVCA 431 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch--------------hhhhhHHHHHHHHhhhhhHHHHHhh
Confidence 44456778889999998888888999999988877654332 223333344444443222222222
Q ss_pred -----hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC--------C--
Q 005144 155 -----DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------T-- 219 (712)
Q Consensus 155 -----~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~-- 219 (712)
-..++..-+.+|........ ....+.-.++..+..+.. .+-....+..|+.+++. .
T Consensus 432 ~p~~v~~~vv~~~~~l~~cs~~~~~--~~~~~ff~~~f~frail~-------~fd~~d~l~~l~~~~~~~~~~~~~n~d~ 502 (1516)
T KOG1832|consen 432 LPLVVIHQVVKLAIELLDCSQDQAR--KNSALFFAAAFVFRAILD-------AFDAQDSLQKLLAILKDAASVTGANTDR 502 (1516)
T ss_pred ccHHHHHHHHHHHHHHHhcchhhcc--chHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHhccCcCc
Confidence 12234445556654443111 111233333333333321 22223455555555531 1
Q ss_pred ---------CHHHHHHHHHHHHHhh-----cCChhcHHHHHhCCCHHHHHHhhcCC------CHHHHHHHHHHHHHhhcC
Q 005144 220 ---------DTKVQRAAAGALRTLA-----FKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 220 ---------~~~v~~~a~~~L~~L~-----~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~~L~~L~~~ 279 (712)
+...-..+|.+|+.-- ...+..++.-.+.+..+..++-+..+ ..+.....++-+-.+...
T Consensus 503 ~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~ 582 (1516)
T KOG1832|consen 503 SLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRL 582 (1516)
T ss_pred cccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHh
Confidence 1123345566665332 11122233334445555555533322 112233333333222221
Q ss_pred Ch-------hHHHHHHHcCChHHHHHhhccC-C-------hhhHHHHHHHHHHHhcCCcchhhhhhhc--------CChH
Q 005144 280 SP-------NIKKEVLAAGALQPVIGLLSSC-C-------SESQREAALLLGQFAATDSDCKVHIVQR--------GAVR 336 (712)
Q Consensus 280 ~~-------~~~~~~~~~~~l~~L~~lL~~~-~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~--------~~l~ 336 (712)
-+ .....+...+++..++++..-. + .++...|..+|.-+.. -++.+..+.+. .++.
T Consensus 583 gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGia 661 (1516)
T KOG1832|consen 583 GPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIA 661 (1516)
T ss_pred ChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceE
Confidence 12 1224455667778888877632 2 2344555555554443 23433333321 2455
Q ss_pred HHHHHhCC----CCHHHHHHHHHHHHHHHH-----------------------------------------HHHHhcCCh
Q 005144 337 PLIEMLQS----PDVQLREMSAFALGRLAQ-----------------------------------------AGIAHNGGL 371 (712)
Q Consensus 337 ~L~~ll~~----~~~~v~~~a~~~L~~l~~-----------------------------------------~~~~~~~~i 371 (712)
.++..-.. .+|+++..|+.+|.|+.. ..+...+||
T Consensus 662 IiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGI 741 (1516)
T KOG1832|consen 662 IILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGI 741 (1516)
T ss_pred EEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccH
Confidence 55554422 478999999999988876 335567899
Q ss_pred HHHHHhhccCC-----hhHHHHHHHHHHhcccCcchhHHHHhhCcc
Q 005144 372 VPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRVGGV 412 (712)
Q Consensus 372 ~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i 412 (712)
..|+++|+-++ ..+|..|+.+|..|+++++.++.+.+.-.+
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence 99999997654 469999999999999999998887775443
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.91 E-value=0.32 Score=50.27 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=134.6
Q ss_pred HHHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHH
Q 005144 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (712)
Q Consensus 53 ~~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (712)
.+....+..+++-|... +....|..++-.|+.-+.++..+..+..+|....+.+.+.+... + .+
T Consensus 17 ~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~----------d-~~ 80 (361)
T PF07814_consen 17 QRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPD----------D-DI 80 (361)
T ss_pred hhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccc----------h-HH
Confidence 45667778888777733 23447888999999999999999999999999999999966554 1 23
Q ss_pred HHHH-HHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccC--Cccccc--hhHHHHHHHHHHHHHhhcCCcchhHHHhcC
Q 005144 133 EKGS-AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD--SNCSRA--VNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 133 ~~~a-~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (712)
...+ +.++.-++.+......+.+.+....++.++.-... ...... ...........+...|.... ....
T Consensus 81 ~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~------~~~~ 154 (361)
T PF07814_consen 81 LALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELL------SSGS 154 (361)
T ss_pred HHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHH------hccc
Confidence 3333 44444444443333444456667777888871111 000000 00001111111111111000 0000
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhh--------------cCChhcHHHHHhCCCHHHHHHhhcC----C--------
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E-------- 261 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~--------------~~~~~~~~~~~~~~~l~~L~~ll~~----~-------- 261 (712)
..+ --......-+..|+.++-.++ ...+..++.+...|++..++..+.+ .
T Consensus 155 ~~~----~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~ 230 (361)
T PF07814_consen 155 SWK----SPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDD 230 (361)
T ss_pred ccc----ccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 000 000011112223333333331 1112336667777888888887751 1
Q ss_pred ----CHHHHHHHHHHHHHhhcCChhHHHHHHHc--CChHHHHHh-hc---cCChhhHHHHHHHHHHHhcCCcchhhhhhh
Q 005144 262 ----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGL-LS---SCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (712)
Q Consensus 262 ----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~l~~L~~l-L~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (712)
+......++++|-+.+..++.+....... +.+..+... +. .....+...++..+.|++-+++..+..+..
T Consensus 231 ~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s 310 (361)
T PF07814_consen 231 PSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS 310 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence 11245668888888887777766666543 223222222 22 223444567777888888766666665554
Q ss_pred cCC
Q 005144 332 RGA 334 (712)
Q Consensus 332 ~~~ 334 (712)
.++
T Consensus 311 ~~l 313 (361)
T PF07814_consen 311 PKL 313 (361)
T ss_pred hHh
Confidence 433
No 198
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=0.075 Score=60.23 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=114.2
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcc
Q 005144 250 ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD 324 (712)
Q Consensus 250 ~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 324 (712)
..|.++..++. .+|+++..|.-+|+.+..-+..++.. -++.|+..++ ++++.+|.++..+++.++...+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 46666676644 47999999999999997766665554 6888999998 67899999999999999875555
Q ss_pred hhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 325 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
.... .-+.|...|.+.++.+|+.|..+|.+|.. ..+.-.|.+..+..++.+++.+|+..|-.....|+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 4333 34788899999999999999999999999 666667888999999999999999999888877764
No 199
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.88 E-value=1.8 Score=49.04 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=115.7
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc----CCC----HHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQ 224 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~v~ 224 (712)
+.+.|++..|+.++....+....+ ++....+..|...|. -+.+|+.+.+.|+++.|+..+. ... ..+.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 356789999999998765433332 666667777777776 6889999999999999988774 333 5677
Q ss_pred HHHHHHHHHhhcCChhcHH-H---HHhC--------CCHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 225 RAAAGALRTLAFKNDENKN-Q---IVEC--------NALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~-~---~~~~--------~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
...+.++..+......... . .... .-+..|++.+.++ ++.+....+++|..|+.++++..+.++
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 7777777766642211100 0 0111 1266666666653 688999999999999999887666654
Q ss_pred HcCChHHHHHhhcc-----C-ChhhHHHHHHHHHHHhcCC------cchhhhhhhcCChHHHHHHhCCCCHH
Q 005144 289 AAGALQPVIGLLSS-----C-CSESQREAALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSPDVQ 348 (712)
Q Consensus 289 ~~~~l~~L~~lL~~-----~-~~~v~~~a~~~L~~l~~~~------~~~~~~l~~~~~l~~L~~ll~~~~~~ 348 (712)
+ .+...++- . ..+- ...+..++.++.+- ...+..+++.|++...++.|...-|.
T Consensus 269 ~-----~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 269 E-----HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred H-----HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 3 22222221 1 1111 11233344443221 24566788889988888888554433
No 200
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.85 E-value=0.025 Score=41.36 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=44.4
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 605 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 605 (712)
+.+.. +|..|.+.+.+.. .|+.++.|+.+...+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 34443 7889999998877 99999999976443333 799999999999999999974
No 201
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=95.85 E-value=0.4 Score=48.14 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=167.6
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
....-..++++|...... ..+...+.++.-++++......+.....+..|+.+-.-... ....|...|-.|..
T Consensus 43 r~eL~e~i~~Vle~~~p~-----t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~--e~sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEPL-----THRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSN--ENSLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCCCc-----hhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccc--cCCCCcccchHHHH
Confidence 444556677778777432 24667777777777765444333333334445444432221 11234555568899
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPL 212 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L 212 (712)
.+.++|.|+. .++..++...+......+++.+........+. .+...=++.|.-+..-....| +.+...++++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 9999999999 88999999998888888877775432211110 222222333333332233334 345667899999
Q ss_pred HHhhcCC---------------CHHHHHHHHHHHHHhhcCChhcHH--HHHhC----CCHHHHHHhhcC--CCHHHHHHH
Q 005144 213 VELLEFT---------------DTKVQRAAAGALRTLAFKNDENKN--QIVEC----NALPTLILMLRS--EDSAIHYEA 269 (712)
Q Consensus 213 ~~lL~~~---------------~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~----~~l~~L~~ll~~--~~~~v~~~a 269 (712)
.+.+.+. +......++.++.|++.+...... .-+.. ++...++..+.. .+.++...+
T Consensus 193 t~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhsha 272 (532)
T KOG4464|consen 193 TNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHA 272 (532)
T ss_pred HHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhcc
Confidence 9988641 123556788888888754332211 11111 112222222221 123333333
Q ss_pred HHHHHHh--------hcCCh----hHHHHHHHcCChHHHHHhhccC---------ChhhHHHHHHHHHHHhcCCcchhhh
Q 005144 270 VGVIGNL--------VHSSP----NIKKEVLAAGALQPVIGLLSSC---------CSESQREAALLLGQFAATDSDCKVH 328 (712)
Q Consensus 270 ~~~L~~L--------~~~~~----~~~~~~~~~~~l~~L~~lL~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (712)
..-|.|. +...+ ..+-...+...++++..+|... ..+.......+|..++. +....+.
T Consensus 273 v~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car-~~R~~Rk 351 (532)
T KOG4464|consen 273 VNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECAR-SHRVMRK 351 (532)
T ss_pred CCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHh-hhHHHHH
Confidence 3333222 11111 1112223344566666666542 12333445556677665 3455555
Q ss_pred hhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
+....++|+|...-+. |++- ..|. ..+++++...+..++..|+..|.-||.
T Consensus 352 ylr~qVLPPLrDV~~R--PEvg----~tLR-------------nkl~Rlmtl~~~~~K~vaAEfLFvLCK 402 (532)
T KOG4464|consen 352 YLRQQVLPPLRDVSQR--PEVG----QTLR-------------NKLVRLMTLPDSSVKDVAAEFLFVLCK 402 (532)
T ss_pred HHHHhcCCchhhhhcC--cchh----HHHH-------------HhhHhheeccchhhhhhhHHHHHHHhh
Confidence 6666788888865443 2221 2222 246667777777777778888877774
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.71 E-value=0.72 Score=46.47 Aligned_cols=179 Identities=22% Similarity=0.202 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhcHHHHHhCCCHHHHH
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~l~~L~ 255 (712)
..+..++..+.++...+.. ...+. ....+..+.+.++.+..+=+..|+.++.-++.. .......+.+ ...+.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 7788888888887754332 22221 123456777778777766566777777777653 2344455554 3678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHH--Hhhcc----------CChhhHHHHHHHHHHH
Q 005144 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVI--GLLSS----------CCSESQREAALLLGQF 318 (712)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~--~lL~~----------~~~~v~~~a~~~L~~l 318 (712)
..+.+.. +.+|..++.+|+-++. ..++..... ...+..+. ...+. +++.+...|+.+++-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8888764 4566677767666543 222221111 01222111 11111 1345777777777776
Q ss_pred hcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 319 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
...-+.....-.-...++.|..+|.+.+.+||..|..+|.-|.+
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 65444422222224568999999999999999999998877665
No 203
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.56 E-value=0.034 Score=46.07 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=59.4
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
.+..|+++|..+.+. .++..||.=|+.++...|..+..+-+.|+=..+++++.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 577888999554432 778889999999999999999888888999999999999999999999999987763
No 204
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.49 E-value=0.9 Score=45.77 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=108.5
Q ss_pred HhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHH
Q 005144 110 VKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188 (712)
Q Consensus 110 ~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~ 188 (712)
+..+++.+. .+|+.|+.+||-.| -+.+.... .++.+...+...+. +++..++.+
T Consensus 33 ~P~v~~~~~------------~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~--------~v~~~al~~ 87 (298)
T PF12719_consen 33 LPAVQSSDP------------AVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDE--------EVKITALKA 87 (298)
T ss_pred HHHhcCCCH------------HHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCH--------HHHHHHHHH
Confidence 366677666 99999999999999 55544332 35667777755433 899999999
Q ss_pred HHHHhhcCCcc-hhH-------HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC
Q 005144 189 ITNLAHENSSI-KTR-------VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 189 L~~l~~~~~~~-~~~-------~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
+..+...+... -.. ......+..+...+.+.+++++..|+..++.|.....-.- ...++..|+-+.-+
T Consensus 88 l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 88 LFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFN 163 (298)
T ss_pred HHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcC
Confidence 98887533211 111 1123566778888889999999999999999875332221 12233444333322
Q ss_pred ----CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC
Q 005144 261 ----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (712)
Q Consensus 261 ----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (712)
++..+|......+-..+..++.+ +..+...+++.+..+....
T Consensus 164 p~t~~~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 164 PSTEDNQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cccCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 35678888888888888776655 4555566777777766543
No 205
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.38 E-value=0.21 Score=55.29 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=109.6
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
...+|.+++.........+..-+.+|.++..+.|. ..+.. ...+|.|++.+.-++..+|..+..++..+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 35778888888866666777788888888754333 33332 456888889999999999999999998886544332
Q ss_pred HHHHHHcCChHHHHHhhccCC---hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005144 284 KKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 359 (712)
...-. .-++|.++.+=.+.+ ..+|..|..+|..++..-|...-......++..|.+.|.++..-+|+.|..+=.+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 22211 335677776666554 5788889999999987556655556667888999999998888899999876544
No 206
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.33 E-value=1 Score=50.02 Aligned_cols=244 Identities=13% Similarity=0.084 Sum_probs=138.5
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
..|.+++.|.+..... ..++...-+++|+..+. +++.... .++.+.|.++.+....+. ||.|...+
T Consensus 527 ~~p~ild~L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~----------DP~V~~~~ 593 (1005)
T KOG2274|consen 527 LQPMILDGLLQLASKS--SDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSE----------DPQVASLA 593 (1005)
T ss_pred cchHHHHHHHHHcccc--cHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcC----------CchHHHHH
Confidence 3455556666554433 44567788889998888 6655443 456778888887765544 33677777
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 137 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
-.++-.++....+...+. .-.+|.+++.|..+..... ......++.+|..+.+..++.-......-+.|++.+..
T Consensus 594 qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~----~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 594 QDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAP----AGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccC----chhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 777777764333332222 3369999999987764322 26777788888877765444333333345667777665
Q ss_pred -cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCC------HHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 217 -EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA------LPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 217 -~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~------l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
.++|.++...+-.+|+.+.....+....-...++ +.++-.+|... +......+...+..|...-+.....-.
T Consensus 669 lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~ 748 (1005)
T KOG2274|consen 669 LHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNL 748 (1005)
T ss_pred eecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhH
Confidence 5567889999999999988644433333333333 33444455433 222333444444444332111111100
Q ss_pred HcCChHHHH-HhhccCChhhHHHHHHHHHHHhc
Q 005144 289 AAGALQPVI-GLLSSCCSESQREAALLLGQFAA 320 (712)
Q Consensus 289 ~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~ 320 (712)
..++..++ .+-......+......++..+..
T Consensus 749 -d~IL~Avisrmq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 749 -DQILRAVISRLQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 11222333 23334456666677777777764
No 207
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.31 E-value=0.24 Score=47.58 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
.....|+..|..++ -+|..+..+.....+..++++|....+. .++..++.+|..+..+++.+...+-..+|+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~-------~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP-------AIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc-------hHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 45667889999999 9999999999999999999999554432 888999999999999999999999999999
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHhhc
Q 005144 210 PPLVELLEFT--DTKVQRAAAGALRTLAF 236 (712)
Q Consensus 210 ~~L~~lL~~~--~~~v~~~a~~~L~~L~~ 236 (712)
..++.++++. +.+++..++..|.-...
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence 9999999875 57888888888887664
No 208
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.7 Score=52.94 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHh--cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CCh-hhHH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP-EHQQ 151 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~-~~~~ 151 (712)
+..+|..+.+.|..++..+.......+ ..+...|..-+++... ..+...+.+|..|- ..+ ++..
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~------------~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS------------PAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHHHHHHhccHHHHH
Confidence 556889999999999886433222221 1223344444444444 56777777777777 333 4433
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh-----cCCcchhHHHhcCChHHHHHhhcCCCHHHHHH
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA 226 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 226 (712)
.+.. .++-++-.++..+. ..++.+..+|..++. +....+....-..+++.+...+-.+...+...
T Consensus 735 ~i~k--~I~EvIL~~Ke~n~--------~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as 804 (1176)
T KOG1248|consen 735 LIPK--LIPEVILSLKEVNV--------KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVAS 804 (1176)
T ss_pred HHHH--HHHHHHHhcccccH--------HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 3332 24444433455554 777888888888872 11111111111233444444443333334333
Q ss_pred HHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChh
Q 005144 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306 (712)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 306 (712)
.+-++..+..+.......-.-.+.+..+..++.+.+++++..|+..+..++..-++.+-.-....+++.+..++.+....
T Consensus 805 ~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~ 884 (1176)
T KOG1248|consen 805 DIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIK 884 (1176)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHH
Confidence 35555555542222222222234566667788889999999999999999988777655555555788888888887778
Q ss_pred hHHHHHHHHHHHhc
Q 005144 307 SQREAALLLGQFAA 320 (712)
Q Consensus 307 v~~~a~~~L~~l~~ 320 (712)
++..+-..+-.+..
T Consensus 885 ~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 885 VRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777777764
No 209
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.14 E-value=0.88 Score=45.85 Aligned_cols=180 Identities=20% Similarity=0.196 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHH--hcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C--ChhhH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V--KPEHQ 150 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~--~~~~~ 150 (712)
....|..++..+.++.........+. ..-++..+.+.++.+.. +-+..|+.+++-++ . .....
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCccH
Confidence 35578999999998876422222221 12356677777777655 45667888888877 2 12223
Q ss_pred HHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHh---hcCCcchhHHHhcCChHHHHHh--hc--------
Q 005144 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---HENSSIKTRVRMEGGIPPLVEL--LE-------- 217 (712)
Q Consensus 151 ~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~L~~l--L~-------- 217 (712)
..+.+ ...+.|.+++.+.... ..++..++.+|.-++ ..++....... ..+..+... .+
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~------~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSAS------PKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccc------hHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence 33333 3677888888776442 144455555555444 32222111000 122211111 11
Q ss_pred --CCCHHHHHHHHHHHHHhhcCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 218 --FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 218 --~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
.+++.+...|+.+.+-|...-+.. ..... ...++.|..+|.+++.+||..|..+|.-|.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 123568888888888777544442 22222 346899999999999999999999988774
No 210
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.11 E-value=0.042 Score=33.59 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=20.4
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 335 VRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 335 l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
+|.+++++++++++||..|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5777777788888888888888777654
No 211
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.57 Score=51.67 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (712)
.++..++..|..+..+.+....+...+.+...+..|++.++ -+-.+++..+..+|...+ ...+|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcevy~--------e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEVYP--------EDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHhcc--------hhhHH
Confidence 58888999999999655666777788899999999998876 666788888888886433 35667
Q ss_pred HHHH-hhcCCC---HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 211 PLVE-LLEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 211 ~L~~-lL~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
.+.+ +....+ ++.+..+-.++.++...-.+-.....+ -.+..++...++++...|..++..+++++.-.......
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 7776 443322 344444556666665422221111211 34566677777777888999999999998643321111
Q ss_pred HHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcC
Q 005144 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~ 321 (712)
.. ...+..++.+.. +++..+|+.|+-.+..+-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 11 123344444444 45778888888888877643
No 212
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.05 E-value=0.11 Score=57.32 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=104.8
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
..+|.+++....... .....-+.+|.++..+.|.-.-.-.-....|.|++.|.-+|..++..++.++..+..
T Consensus 867 ~ivP~l~~~~~t~~~--------~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPG--------SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred hhHHHHHHHhccCCc--------cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 467778877774333 555666777777776444311111123566888888899999999999999988875
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCC---HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHH
Q 005144 237 KNDENKNQIVECNALPTLILMLRSED---SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (712)
..+.-...-.+ -++|.++.+-.+.+ ..||..|+.+|..|+..-|-..-......++..|...|.+...-+|++|+.
T Consensus 939 ~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 939 ESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred hccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 44444333333 36788877777665 689999999999998854543333344557788888898888888999887
Q ss_pred HHHH
Q 005144 314 LLGQ 317 (712)
Q Consensus 314 ~L~~ 317 (712)
+-.+
T Consensus 1018 tR~~ 1021 (1030)
T KOG1967|consen 1018 TRQN 1021 (1030)
T ss_pred Hhhh
Confidence 6554
No 213
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.98 E-value=0.36 Score=50.35 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=120.0
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
..+...++.+.+.+. +...+..|+..|..++.++.....++...++..|.+++.++..-. ..++..
T Consensus 81 p~~~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~--------~~~~L~ 146 (713)
T KOG2999|consen 81 PSHYAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCM--------SSELLS 146 (713)
T ss_pred chHHHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccch--------HHHHHH
Confidence 445667788888877 445577799999999999999999999999999999998876521 226777
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
.++.++..+-...-..-..+...++..+..+.+.... +..+...|+..|-++...++..+..+.+.--+..|+.
T Consensus 147 ~~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~------~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~ 220 (713)
T KOG2999|consen 147 TSLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKRE------DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIR 220 (713)
T ss_pred HHHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhhh------cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHH
Confidence 7777777766221111122233345555555532211 1266778899999998877778888888889999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDE 240 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~ 240 (712)
.+...+..++..|...+..+....++
T Consensus 221 hlq~~n~~i~~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 221 HLQVSNQRIQTCAIALLNALFRKAPD 246 (713)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhCCh
Confidence 99999999998888888777654443
No 214
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.94 E-value=2.2 Score=47.60 Aligned_cols=312 Identities=14% Similarity=0.126 Sum_probs=168.8
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
..+...+...+..+ .-|.....+.+++...+.. +.+...+ .-.+...+..+.-+.++ -++..|++
T Consensus 448 ~~l~~~~~~~l~~~-e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~-----------~~ki~a~~ 513 (1005)
T KOG2274|consen 448 IELTIMIDNGLVYQ-ESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPP-----------PVKISAVR 513 (1005)
T ss_pred HHHHHHHHhhcccc-cCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCC-----------chhHHHHH
Confidence 33444444444443 3455666888888766653 1111111 11233444444433332 57778888
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh--
Q 005144 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-- 216 (712)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-- 216 (712)
++...+...-+ . -...+++..|+.+.....+ ++....+.+|+..|.-+++.. ......+.|.++.+.
T Consensus 514 ~~~~~~~~~vl-~-~~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k 582 (1005)
T KOG2274|consen 514 AFCGYCKVKVL-L-SLQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLK 582 (1005)
T ss_pred HHHhccCceec-c-ccchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHH
Confidence 88777722111 1 1123455556666655554 888888899999997666543 344555666665554
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
.++||.+...+-.++..++. ...+...+.+ ..+|.++..+..+. +....-++..|..+.+..+.--...+-.-.
T Consensus 583 ~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 583 YSEDPQVASLAQDLFEELLQ-IAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred hcCCchHHHHHHHHHHHHHH-HHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 35678777777777777774 3444433333 47899999998765 566666777777666654432333333446
Q ss_pred hHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChH--HHHHHhCC-CCHHHHHHHHHHHHHHHH------
Q 005144 293 LQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR--PLIEMLQS-PDVQLREMSAFALGRLAQ------ 362 (712)
Q Consensus 293 l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~--~L~~ll~~-~~~~v~~~a~~~L~~l~~------ 362 (712)
+|.+.++.- +++.++...+..+|..+.+...+....-...++.. .+++.+.. -+|+.-+.++...+.+..
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHH
Confidence 677766654 55677778888888888765444332222222222 33333311 133333444444444443
Q ss_pred -HHHHhc--CChHH-HHHhhccCChhHHHHHHHHHHhccc
Q 005144 363 -AGIAHN--GGLVP-LLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 363 -~~~~~~--~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
..+... ..+.. +.++.......+....+.++..|..
T Consensus 741 ~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 741 SSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred HHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 111100 01222 2333344556677777777777754
No 215
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=0.57 Score=53.57 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=120.1
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
..|.+++.++.+.. +.+|+++..|.-+|+++. -+.++... .++.|...+...... -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCc-------eeee
Confidence 56788888876654 245699999999999998 66655433 478999999855442 7888
Q ss_pred HHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 005144 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (712)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 263 (712)
+++-+++.++..-|..- ...-+.|.+.|.+.++.+|+.|..+|.+|... ..+.-.|-+..+..++.++++
T Consensus 980 N~VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcH
Confidence 88888888886444432 23456888999999999999999999999862 233446889999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC
Q 005144 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (712)
.++.-|=.....|+..... -.+.+|-++.-|.++
T Consensus 1050 ~IsdlAk~FF~Els~k~n~------iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKGNT------IYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHHhhhcccc------hhhhchHHHHhhccC
Confidence 9998888888888644211 123556565555554
No 216
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.73 E-value=0.42 Score=51.28 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=88.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhh
Q 005144 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (712)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (712)
..++...+ ++..+..-|+..|......-|+.... ++..+++++++.+..+|.+|...|..+|..+++....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 44555555 46889999999999999888876555 67889999999999999999999999998766655444
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhc---cCChhHHHHHHHHHH
Q 005144 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALY 394 (712)
Q Consensus 332 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~ 394 (712)
...|.++|.+.++.-...+-.+|..+.. +-..+.+..+..-+. +.+..+|+.++..|.
T Consensus 98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~--~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLK--QDPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHTT---HHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcccHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 4899999999888777777777777766 111223344444443 577889999988874
No 217
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=1.1 Score=49.63 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (712)
...++..++..|+.+....+....+...+++...+..|++.++ -|-..|.+.+..|| ..|+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~Lcevy~e------ 801 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVSLCEVYPE------ 801 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHHHHHhcch------
Confidence 3457888999999999865666667778999999999999888 78888999888888 3333
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
..++.+...-.+....... +.+...-.++.++...-.+....... -.+..++...++++...|..++..++++
T Consensus 802 --~il~dL~e~Y~s~k~k~~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred --hhHHHHHHHHHhcccCCCc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 3466666633332221111 22223335555555322222211221 4556777778888888999999999999
Q ss_pred hcCChhc-HHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh
Q 005144 235 AFKNDEN-KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 281 (712)
Q Consensus 235 ~~~~~~~-~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~ 281 (712)
|.-.... ...+. .++..++.+.+ ++++-+|+.|+..+..+..+..
T Consensus 875 cq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 875 CQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 9633221 11222 23444555544 4578899999999998876543
No 218
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.64 E-value=13 Score=44.37 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=74.9
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhH-HHHHhCCChHHHHHHHhcccCCccccchhHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (712)
+.+..++..|..+.. .+|..|+++|+.+. .+|... ...++.+ +-.-+.+... .|
T Consensus 816 ~yLk~Il~~l~e~~i------------alRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dssa--------sV 871 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI------------ALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSA--------SV 871 (1692)
T ss_pred HHHHHHHHHhcCchH------------HHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchh--------HH
Confidence 457778888886665 89999999999999 555432 2222222 2222333333 89
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhc
Q 005144 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241 (712)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~ 241 (712)
++.|+..++.....+++.-...+ ..+.+-+.++...||+.+++.++.+|...|+.
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 99999999877655555443333 36666677788899999999999999766544
No 219
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.58 E-value=0.038 Score=33.74 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.9
Q ss_pred hHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 486 LELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 486 ~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
+|.+.+++.++++.||..|+.+|..++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999998864
No 220
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=2.3 Score=46.16 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhh
Q 005144 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (712)
Q Consensus 249 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (712)
+.+..++.-..+++..||..++.+|..+...+ ..+...+-.+....+..-+.+..+.+|.+|+.+|..+-. ++..-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCC--
Confidence 45666666777788999999999999997532 223344445566667777778889999999999999863 22110
Q ss_pred hhhcCChHHHHHHh-CCCCHHHHHHHHHHHH
Q 005144 329 IVQRGAVRPLIEML-QSPDVQLREMSAFALG 358 (712)
Q Consensus 329 l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~ 358 (712)
+..++..+..++ .+++++||+.+...+.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 134567777777 5689999998876653
No 221
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.52 E-value=1.4 Score=45.68 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=140.1
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
+..++.=+.+..+. .+|+.++--|..-+.+++++..+...|....+.+.+.+.... .+...+
T Consensus 23 v~ylld~l~~~~~~-----------s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~ 84 (361)
T PF07814_consen 23 VEYLLDGLESSSSS-----------SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALA 84 (361)
T ss_pred HHHHHhhcccCCCc-----------cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHH
Confidence 56666666633221 789999999999999999999999999999999999655442 355555
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC-CHHHHHHHH-HHHHHhhcCChhcHHHHHhCCCHHHHHHhh-----
Q 005144 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAA-GALRTLAFKNDENKNQIVECNALPTLILML----- 258 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~-~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll----- 258 (712)
..++..+...+......+.+.+....++.++... ...+..... .-=.+++ ... ...+..+...+
T Consensus 85 ~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~ls--------k~~-~~~~~~~~~~~~~~~~ 155 (361)
T PF07814_consen 85 TAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLS--------KVQ-QKSRSLCKELLSSGSS 155 (361)
T ss_pred HHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhh--------HHH-HHHHHHHHHHHhcccc
Confidence 5555555443444444444556666667777611 000000000 0000000 000 00111111111
Q ss_pred -c---CCCHHHHHHHHHHHHHhh--------------cCChhHHHHHHHcCChHHHHHhhcc----C------------C
Q 005144 259 -R---SEDSAIHYEAVGVIGNLV--------------HSSPNIKKEVLAAGALQPVIGLLSS----C------------C 304 (712)
Q Consensus 259 -~---~~~~~v~~~a~~~L~~L~--------------~~~~~~~~~~~~~~~l~~L~~lL~~----~------------~ 304 (712)
. ....+.+..|..++-.++ ...+.++..+...|+++.++.++.+ . +
T Consensus 156 ~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~ 235 (361)
T PF07814_consen 156 WKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQS 235 (361)
T ss_pred ccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHH
Confidence 0 112233344444444442 1123355667778889999988862 1 1
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhc--CChHHHHHH-hC---CCCHHHHHHHHHHHHHHHH------HHHHhcCChH
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIEM-LQ---SPDVQLREMSAFALGRLAQ------AGIAHNGGLV 372 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~l~~L~~l-l~---~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~ 372 (712)
......+..+|-+.+..++++...+... +.++.+... +. ....+....++..+.|++. ..+...+...
T Consensus 236 l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~ 315 (361)
T PF07814_consen 236 LIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQ 315 (361)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhcc
Confidence 1234557778888887777777766653 223222222 22 2233444566667777766 1233222211
Q ss_pred HH---HHh----hc-------cCChhHHHHHHHHHHhcccCc
Q 005144 373 PL---LKL----LD-------SKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 373 ~L---~~l----l~-------~~~~~v~~~a~~~L~~l~~~~ 400 (712)
.+ ... .. ...-++..-++++|.||+.+.
T Consensus 316 ~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 316 QLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred chHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 11 111 11 112456777888888887653
No 222
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.52 E-value=0.082 Score=47.96 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=69.1
Q ss_pred cEEEEecCccchhhHHHhhhcCH--HHHHhccCCC---CCCCCCceecCCCCHHHHHHHHHHHhcCCCC-CChhhHHHHH
Q 005144 546 DVTFLVEGRRFYAHRICLLASSD--AFRAMFDGGY---REKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLL 619 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s~--~f~~~~~~~~---~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~l~ 619 (712)
-|.+-++|+.|..-+.-+..|-| .+..||++.- ++.+.+-+-+ +-+|.-|+.++.|+-+|++. .+.-.+.+++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvL 88 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGVL 88 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHHH
Confidence 45566677776666666665554 5678887642 3444445555 66999999999999999987 5677899999
Q ss_pred HHHHHhChHhHHHHHHHH
Q 005144 620 RAADQYLLEGLKRLCEYT 637 (712)
Q Consensus 620 ~~A~~~~~~~l~~~c~~~ 637 (712)
+.|+||++-+|+...+..
T Consensus 89 eeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 89 EEARFFQILSLKDHLEDS 106 (302)
T ss_pred HHhhHHhhHhHHhHHhhh
Confidence 999999999999998873
No 223
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.44 E-value=0.22 Score=44.53 Aligned_cols=146 Identities=22% Similarity=0.286 Sum_probs=95.6
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 208 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 208 ~i~~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
.+..++..|. ...+++|..++-++..+- +..++...+. +-+.+-..+...+.+-...++.++..+....++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555554 355678888888887774 2233333221 233344455554445677888889998888888776
Q ss_pred HHH-HcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHH-HHHHHHHHHHH
Q 005144 286 EVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ-LREMSAFALGR 359 (712)
Q Consensus 286 ~~~-~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~ 359 (712)
.+. ..|+++.++.++. ..+..+...++.+|..-| .+..++. .+...+++.|.+.++ +++.. ++..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 666 5788899999998 667777777877777655 3545555 444667899999995 45555 78888777764
No 224
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=5.5 Score=41.55 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
.+|..|++.|+|.+ +-|+-....... .+..++.-|.++.+. +|+..++.+|..+...-....-..+-.++.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~-------~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNE-------EVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 89999999999999 545543332222 344444444444432 899999999888774222111111111333
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
-.+..+..+.+++++.++...++.|+.-. ...+..+.+ .+....++-.++++++.+- .||+.....+
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c 414 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTC 414 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhc
Confidence 45677788899999998888887776411 222333332 1223445556677777664 4555555554
No 225
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.29 E-value=2.8 Score=40.93 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=139.8
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHH---HHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ---IVE--CNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 202 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~---~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
.+...|..+.++..+...+-+.+..++.+..++-...-..+.. ... ...+..|+.--.. .+++...+...+...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 3556788899999999888888999999888887533322222 211 2233333333111 366766666666666
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCC----hHHHHHHhCCCCHHHHHH
Q 005144 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLREM 352 (712)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~v~~~ 352 (712)
... +...+.+..+.-+.......+.+..++...|..+...+..........+...+. .+..-.++++.+.-++..
T Consensus 153 irh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 543 566677777888888888888888888888888888776544333333443322 344666778999999999
Q ss_pred HHHHHHHHHH---------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcch
Q 005144 353 SAFALGRLAQ---------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 353 a~~~L~~l~~---------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
+...++.+.. +.+.+...+..++.+|.++...+|..|-..-+-...++..
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999998887 5555667788999999999999999999888877666544
No 226
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.22 E-value=0.41 Score=51.75 Aligned_cols=186 Identities=14% Similarity=0.081 Sum_probs=115.3
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HH
Q 005144 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AG 364 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~ 364 (712)
...++++.|+.++...+..+|..-+.-+-+... ..-...++..++|.+...+.+.++.+|+..+.++..|+. ..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 446688999999998888888776666666553 233346677888999999999999999999888888887 33
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhh
Q 005144 365 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 444 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 444 (712)
......+..+-++-.+.+..+|.+..-+|+.++.+..... +.+++.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~------------------------------- 449 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLA------------------------------- 449 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccc-------------------------------
Confidence 3444445556666566677888888888888876532211 222111
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 445 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 445 ~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
-....-++++-+.-|..+..++.......+.... ....+|.+.-+.-+++..++..|-.++.....
T Consensus 450 -~aftralkdpf~paR~a~v~~l~at~~~~~~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 450 -SAFTRALKDPFVPARKAGVLALAATQEYFDQSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred -hhhhhhhcCCCCCchhhhhHHHhhcccccchhhh--hhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 1122233444444455555555544444443332 44555666666666666666666555554433
No 227
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.10 E-value=1.3 Score=45.61 Aligned_cols=171 Identities=18% Similarity=0.153 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHhhc-Ch-hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 76 DRAAAKRATHVLAELAK-NE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
..+.+..|+.-|..+.. +. ...... -..++..+++.|.+... +..+..|++.|..++ ..+.-- .
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~-----------~~~k~laLrvL~~ml~~Q~~~l-~ 366 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSED-----------EIIKKLALRVLREMLTNQPARL-F 366 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchh-----------hHHHHHHHHHHHHHHHhchHhh-h
Confidence 34456777776666555 32 111111 12246778888877433 178999999999999 554321 1
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHH-HHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA-ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 231 (712)
--..-++..++..-.+.++ ++...|... +.-++...| .+ .|..+..++...|......++..+
T Consensus 367 DstE~ai~K~Leaa~ds~~--------~v~~~Aeed~~~~las~~P-~~-------~I~~i~~~Ilt~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQD--------EVMRVAEEDCLTTLASHLP-LQ-------CIVNISPLILTADEPRAVAVIKML 430 (516)
T ss_pred chHHHHHHHHHHHHhCCch--------hHHHHHHHHHHHHHHhhCc-hh-------HHHHHhhHHhcCcchHHHHHHHHH
Confidence 0111123333443344444 566656554 444555444 33 233455555556766666777777
Q ss_pred HHhhcCChhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 232 RTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
-.++. .-.++.+.. ..+.|.+++...+.+..||+.|+.+|..+.
T Consensus 431 Tkl~e--~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 431 TKLFE--RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHh--hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 77774 222333322 467899999999999999999999998874
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.99 E-value=1.2 Score=47.96 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHH
Q 005144 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 339 (712)
.+++++..|.-+|..+..-+.+++.. -+|.++..++ .++|.+|.+++..++.++......... .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 57888988888888875544444443 6888999887 678999999999999877433332222 236777
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCc
Q 005144 340 EMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 340 ~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 400 (712)
.-|.+.+..|++.+..++.+|.. ..+.-.|-...+..+|.+.+.++...|-.....++.-+
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 88889999999999999999988 45555677888999999999999999999998887643
No 229
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.96 E-value=0.06 Score=53.35 Aligned_cols=140 Identities=18% Similarity=0.176 Sum_probs=113.2
Q ss_pred cEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCCh--hhHHHHHHHHH
Q 005144 546 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQDLLRAAD 623 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~l~~~A~ 623 (712)
+..+......+++|+.++...|+.|..+....-..+..+.+..-+++...+..+..++|.. .+-.+ .....++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 4444556788999999999999999888766533344456777788999999999999998 43332 23456777778
Q ss_pred HhChHhHHHHHHHHHHh-cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhc
Q 005144 624 QYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 686 (712)
Q Consensus 624 ~~~~~~l~~~c~~~l~~-~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l 686 (712)
.|.++..+..|...+.. .++..+++..+..+..|+...|...+...+...|....+++.+..+
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 89999999999888876 5789999999999999999999999999999999999987776554
No 230
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.93 E-value=2.4 Score=44.02 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-C---CCHHHHHHHHHHH
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-F---TDTKVQRAAAGAL 231 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~---~~~~v~~~a~~~L 231 (712)
...+..|..++++... .-..+...++.++..+...+|..-..+.+.|.++.+++.+. . ++.++....-.++
T Consensus 105 s~L~~sL~~Il~n~~~-----FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 105 SSLLSSLKHILENPEV-----FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred hhHHHHHHHHHhCccc-----cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 4455566666655432 11278888999999999988888888999999999999887 3 4578888888899
Q ss_pred HHhhcCChhcHHHHHhCCCHHHHHHhhcCCC-------HHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 232 RTLAFKNDENKNQIVECNALPTLILMLRSED-------SAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
..||- |....+.+.+.+.++.+++++.+++ .+.-......+-.|.++.+..+..+
T Consensus 180 ~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 180 SAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred hHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 99997 7888889999999999999987742 1333444455555666655554443
No 231
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.74 E-value=0.46 Score=51.34 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=128.8
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 204 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
++.+++|.|+++....|..+|...+.-+-... +.-...+.+..+++.+..-+.+.++.+|..++.++..|+..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 55689999999999999999986655555444 2334456677799999999999999999999999988864321
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Q 005144 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~- 362 (712)
........+..+..+-.+.+..+|.+...+++.++....... .+.-....+...++++-+..|..+..++.....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 223334455555555556678899998889988875432221 222233445556777777788888888876665
Q ss_pred --HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 363 --AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 363 --~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
..-+....++.++-+.-+++..++..|-.++...
T Consensus 478 ~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 478 FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 4444556667777777778888888887777654
No 232
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.60 E-value=0.45 Score=35.77 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 005144 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (712)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (712)
...|+|++++++..+.....+-+.++++.++++....+.- .+|-.|..+|+-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888888888889999999999866542 799999999999998887776665554
No 233
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=15 Score=40.34 Aligned_cols=104 Identities=20% Similarity=0.137 Sum_probs=69.7
Q ss_pred cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
.|.+..+++-..+.+. .||-.++.+|..+.++....+..+-.+....+..-+.+..+ .++
T Consensus 84 ~~~f~hlLRg~Eskdk------------~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VR 143 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDK------------KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVR 143 (892)
T ss_pred HHHHHHHHhcccCcch------------hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc--------hHH
Confidence 3455666666666666 89999999999999644444444445566666666666666 899
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHH
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGAL 231 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L 231 (712)
..|+.+|+.+-.+..+ . +..+...+..+++ +++++||..|+..+
T Consensus 144 iqAv~aLsrlQ~d~~d-e----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKD-E----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHHhcCCCC-C----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 9999999998742111 1 1234557777775 46799999655444
No 234
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.34 E-value=1 Score=51.00 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHH
Q 005144 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (712)
....+.+.+.+-+...+.++ +...+.+|++.+......+.....-...|.+..++.....+... .+.
T Consensus 246 ~~~di~~ki~~~l~t~~~s~--~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~-----------~v~ 312 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSK--KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANI-----------NVV 312 (815)
T ss_pred chhhhhhhcChHHHHhhhcc--chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcch-----------hHH
Confidence 34556666666666666553 67779999999988877544111122234445555555433331 688
Q ss_pred HHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 005144 134 KGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (712)
Q Consensus 134 ~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (712)
..|+.+|..|+ ..+.++.. ..+..+.++.-+..... +++..+..++-.++...+ .....+.
T Consensus 313 ~~aa~~l~~ia~~lr~~~~~~--~~~v~p~lld~lkekk~--------~l~d~l~~~~d~~~ns~~-------l~~~~~~ 375 (815)
T KOG1820|consen 313 MLAAQILELIAKKLRPLFRKY--AKNVFPSLLDRLKEKKS--------ELRDALLKALDAILNSTP-------LSKMSEA 375 (815)
T ss_pred HHHHHHHHHHHHhcchhhHHH--HHhhcchHHHHhhhccH--------HHHHHHHHHHHHHHhccc-------HHHHHHH
Confidence 88999999998 22333222 33457777777776655 666666666666654222 1235678
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCh-hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 212 LVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 212 L~~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (712)
+...+++.++.++..+...+.......+ .....-.-.++++.++....+.+.+||..|..+++.+..
T Consensus 376 I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 376 ILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999887766666654333 221222223578888899999999999999999888753
No 235
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.47 Score=49.67 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--c-ccchhhccCchHHHHHHhcCCCch
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPD--D-QRTIFIDGGGLELLLGLLGSTNPK 499 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~--~-~~~~l~~~~~~~~L~~ll~~~~~~ 499 (712)
++..|-.++.+...-||..|+.+++.+.... + +.+ -.++++.+.+++.+++++
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~---v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN---VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh---HHHHHHHHHHHHhhhhHh
Confidence 4455667788888889999999998884332 2 322 246678888888877665
No 236
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=93.32 E-value=0.27 Score=49.65 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=69.7
Q ss_pred EEEEecCccchhhHHHhhhcC--HHHHHhccCCCCCCCCCc--eecCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHH-H
Q 005144 547 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR-A 621 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l~~-~ 621 (712)
|.+-++|+.|...+.-|+-.. .||.+++++.|.-.+.+. |-+ |=+|+.|..+|.|+-||++++.......++. =
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 677889999999999888665 699999998886555443 555 5589999999999999999997776665555 8
Q ss_pred HHHhChHhHHH
Q 005144 622 ADQYLLEGLKR 632 (712)
Q Consensus 622 A~~~~~~~l~~ 632 (712)
|.||++..|.+
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999998777
No 237
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.30 E-value=6.9 Score=43.75 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=94.0
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHH----hhcCCcchhHHHhcCChHHHHHhhc----CCCHHHHHHHHH
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL----AHENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAG 229 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l----~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~ 229 (712)
.+..+..++.++...... .+...++-+++.+ |...+.+. .......++.+.+.|. ..+.+-+...+.
T Consensus 394 ~l~~l~~l~~~~~~~~~~----~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 394 ILKALFELAESPEVQKQP----YLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 366677777655332211 3444444444444 43333221 1122345566666553 345666778899
Q ss_pred HHHHhhcCChhcHHHHHhCCCHHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc--CC
Q 005144 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-S--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CC 304 (712)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~ 304 (712)
+|+|+.. + ..++.+..++. + .+..+|..|+++|..++...+.. +-+.++.++.+ .+
T Consensus 469 aLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP 529 (574)
T ss_pred hhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence 9998884 2 23455555554 2 35789999999999987654443 34456666654 36
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHH
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAF 355 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~ 355 (712)
.++|..|+.+|... +|.. ..+..+...+. +++.+|......
T Consensus 530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhHH
Confidence 78888888877763 2221 23466666663 456666654433
No 238
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.25 E-value=6.2 Score=41.05 Aligned_cols=168 Identities=10% Similarity=0.116 Sum_probs=114.4
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccc----C-------Ccc-------cc--------chhHHHHHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHM----D-------SNC-------SR--------AVNSVIRRAAD 187 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~----~-------~~~-------~~--------~~~~v~~~a~~ 187 (712)
.|+..|-.+. ..+..-..+.+.+++..+++.|...- . ... .. ....+++..+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 4566677777 55666667788899999888775321 0 000 00 01134444555
Q ss_pred HHHHHhh-c--CCcchhHHHh-cCChHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc-
Q 005144 188 AITNLAH-E--NSSIKTRVRM-EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (712)
Q Consensus 188 ~L~~l~~-~--~~~~~~~~~~-~~~i~~L~~lL~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~- 259 (712)
.+..+.. + ....-..+.+ ...+..|...+++. .+.+...|+.++..+..++|.....+.+.|+++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5555555 1 1111122344 34445566666654 3788899999999999888888899999999999999887
Q ss_pred C---CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC
Q 005144 260 S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (712)
Q Consensus 260 ~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (712)
. ++.++....-.+|+.||-. ....+.+.+.+.++.+++++.+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence 4 3678888888888888865 56678888899999999999874
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.13 E-value=2.9 Score=47.23 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=77.7
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcC
Q 005144 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 207 ~~i~~L~~lL~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~ 279 (712)
..++.+...+. ..+..-+..++.+|+|+.. ...++.+..++... +..+|..|+++|..++..
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 45566666664 4567888899999999984 23678888888766 678999999999988766
Q ss_pred ChhHHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHH
Q 005144 280 SPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFA 356 (712)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~ 356 (712)
.++. +.+.++.++.+. +.++|..|..+|... +|.. ..+..+...+. .++.+|.......
T Consensus 555 ~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 555 CPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred CcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 5543 345577777653 577888887777663 2221 23566667774 4667776555444
Q ss_pred H
Q 005144 357 L 357 (712)
Q Consensus 357 L 357 (712)
|
T Consensus 617 L 617 (618)
T PF01347_consen 617 L 617 (618)
T ss_dssp H
T ss_pred c
Confidence 3
No 240
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.02 E-value=1.7 Score=47.41 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=97.5
Q ss_pred hhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhcccCcchhH
Q 005144 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVA 404 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~ 404 (712)
-+...++|.|...+++.+..+++.++..+..++. ...+....++.+-.+- ++.+..++.+++.++..+...
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----- 459 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----- 459 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-----
Confidence 3345678888888899999999999999999888 5555566667666664 566788888888888877621
Q ss_pred HHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccC
Q 005144 405 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 484 (712)
Q Consensus 405 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 484 (712)
+-...+++ .+..+....+..+|.+.....++..++.........+..+.
T Consensus 460 -lD~~~v~d------------------------------~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~ 508 (700)
T KOG2137|consen 460 -LDKAAVLD------------------------------ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAEN 508 (700)
T ss_pred -HHHHHhHH------------------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhh
Confidence 11111111 24456666777899999999998888876665534455677
Q ss_pred chHHHHHHhcCCCchhhhh
Q 005144 485 GLELLLGLLGSTNPKQQLD 503 (712)
Q Consensus 485 ~~~~L~~ll~~~~~~~~~~ 503 (712)
.+|.++.+...+.-....+
T Consensus 509 VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 509 VLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred hhhhhhhhhhcccccHHHH
Confidence 8888887777655444443
No 241
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.90 E-value=1.3 Score=40.89 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhC----------------CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDN----------------GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (712)
.....++..|+|++..+.....+++. ..+..|+..+........ +...-..+.+.+|.|++.
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~--n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSY--NKKDNYDYLASVLANLSQ 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccC--CCCcchhHHHHHHHHhcC
Confidence 46678899999999655555443322 255666766655211110 012556788999999997
Q ss_pred cCCcchhHHHhc--CC--hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh
Q 005144 195 ENSSIKTRVRME--GG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (712)
Q Consensus 195 ~~~~~~~~~~~~--~~--i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (712)
.+..|..+... +. +..|+.+..+.+..-|.-++.+|.|+|.+.+.+ ..+..
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~ 142 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLS 142 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcC
Confidence 77788877754 33 677888888887777788999999999844433 44433
No 242
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.89 E-value=0.7 Score=41.34 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhH-HHhcCCh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR-VRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i 209 (712)
++|..+.-++..+- +..+.. ...-.-..+-.++..... +-...+..++..+-...++.... +...|+.
T Consensus 20 ~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~--------d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 20 EVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEM--------DSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp CHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHC--------CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred hHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccc--------hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 79999999999885 222222 111122333444444333 34455777777777655554444 4456888
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHH-HHHHHHHHHHH
Q 005144 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSA-IHYEAVGVIGN 275 (712)
Q Consensus 210 ~~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~-v~~~a~~~L~~ 275 (712)
+.++.++. ..+..++..++.+|..=|. +...+..+. ..+++.|-.+.+. +++. ++..|+-.|..
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 89999998 7889999999999998884 455554444 4579999999964 4555 67777766654
No 243
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=19 Score=39.79 Aligned_cols=262 Identities=13% Similarity=0.080 Sum_probs=137.4
Q ss_pred HhHHHHHHHHHHHHHhhc--C-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHH
Q 005144 75 ADRAAAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~--~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (712)
.+....+-|++.++++.+ + +....-+.+.=+++.++..+++... -++.+|+..+..+. .+.++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------fL~Srace~is~~e--eDfkd 493 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------FLKSRACEFISTIE--EDFKD 493 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------chHHHHHHHHHHHH--Hhccc
Confidence 456666778888888766 2 2233334445567888888888877 78999999999995 33433
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh---cCCCHHHHHHHH
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL---EFTDTKVQRAAA 228 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~ 228 (712)
...-..+.+...+.+++++- .++..|+-++..+..++ .....+. ..+.+.+-++| +.-+.++...++
T Consensus 494 ~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~s-ahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 494 NGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFS-AHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred chHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHH-hhhhHHHHHHHHhcccccchHHHHHH
Confidence 33334456666777777554 77888888888887644 3333332 22333333333 333344444333
Q ss_pred HHHH-HhhcCChhcHHHHHhC---CCHHHHHHhhcCC---C---HHHHHHHHHHHHHhhcC--ChhHHHHH---HHcCCh
Q 005144 229 GALR-TLAFKNDENKNQIVEC---NALPTLILMLRSE---D---SAIHYEAVGVIGNLVHS--SPNIKKEV---LAAGAL 293 (712)
Q Consensus 229 ~~L~-~L~~~~~~~~~~~~~~---~~l~~L~~ll~~~---~---~~v~~~a~~~L~~L~~~--~~~~~~~~---~~~~~l 293 (712)
..+. ..+..-......++.. ..++....++..+ + .+=+..|.++|..+..- +-+++..+ ......
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sly 643 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLY 643 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3332 2221111111122111 1222333333332 1 12344455555444210 01111111 123345
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHHH
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQ 362 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~ 362 (712)
|.+--++.+.-.+.-.+|+..+-+.+....+.- -+--|+.+.+.+++.+... .-.+.+..++.|+..
T Consensus 644 pvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 644 PVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 555555666667777788887777654222211 1223556666666666553 566777888888877
No 244
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.65 E-value=13 Score=39.63 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=73.2
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhH
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNI 283 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~ 283 (712)
.|.+..+++.+.+++..||..++..|+.++. .-.......-.+.+..|..-+-+..+.||.+|+.+|+.+-.. ++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3667778888889999999999999998884 333334444456777777777788999999999999988542 2222
Q ss_pred HHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHh
Q 005144 284 KKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA 319 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~ 319 (712)
.....|+.+++ +++.++|+.+ +.|+.
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~a---llni~ 195 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLA---LLNIS 195 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHH---HHHee
Confidence 12345666776 4577888875 44554
No 245
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.59 E-value=0.39 Score=36.12 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH-----HHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcccCcchhHHHHhhC
Q 005144 350 REMSAFALGRLAQ-----AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVG 410 (712)
Q Consensus 350 ~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 410 (712)
.+.+.|++++++. ..+.+.+.++.++++.. ++...+|-.|..+|.-++++.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4689999999998 55666789999999994 6679999999999999999999888887766
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.57 E-value=8 Score=43.78 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=104.8
Q ss_pred HHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH-HHHHh----cCCh--HHHHHhhccCC-hh
Q 005144 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ-AGIAH----NGGL--VPLLKLLDSKN-GS 384 (712)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~----~~~i--~~L~~ll~~~~-~~ 384 (712)
++++++...++.+..+++.+++..+...++. ...+++..+.+.+.|++. ....+ ...+ ..+..++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8889998889999999999999999999975 667889999999999998 11111 1111 23333444444 48
Q ss_pred HHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHH----HHHHH----hhhhhhHHH-HHHHHhhh
Q 005144 385 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL----KRLEE----KIHGRVLNH-LLYLMRVA 455 (712)
Q Consensus 385 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l----~~l~~----~~~~~~~~~-Lv~ll~~~ 455 (712)
.-..++..|..+..+.+.... ...++++...+ ..... ......+.. +..++..+
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-----------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-----------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-----------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 888999999988654332000 00011111111 00000 011112222 55555555
Q ss_pred -hhhHHHHHHHHHHHhcCC-CcccchhhccCchHHHHHHhcC
Q 005144 456 -EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 495 (712)
Q Consensus 456 -~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~ll~~ 495 (712)
.+..+.+|++++.++... +++++.+.+.|+++.+.+.-..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 778899999999999765 4477777888999888766554
No 247
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.13 E-value=7.7 Score=40.22 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=88.7
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHH-HHHhhcCChhHHH
Q 005144 208 GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV-IGNLVHSSPNIKK 285 (712)
Q Consensus 208 ~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~-L~~L~~~~~~~~~ 285 (712)
++..+++.|.+ .++..+..|+++|..++...+..-..-.+ -++..+++.-.+.++++...|... +..++...|..+-
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 44567777776 67888999999999999643332111111 235555666666666665555543 4444444554432
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
. .+..++...+.+.-..+...+..++..-+.-....+-.++.|.+++...+.+..||+.++.+|..+..
T Consensus 409 ~--------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 409 V--------NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred H--------HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2 33344444555555555556666664222111122225788999999999999999999998877665
No 248
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.08 E-value=4.2 Score=42.88 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=114.4
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
...+.+++.+++. .-+..|...+..++.++.+...++...++..|.+++.+...-. ..++...+
T Consensus 85 a~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~----~~~~L~~~ 148 (713)
T KOG2999|consen 85 AKRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCM----SSELLSTS 148 (713)
T ss_pred HHHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccch----HHHHHHHH
Confidence 3457788888877 6777799999999999999999999999999999998776521 12666666
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 005144 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 263 (712)
+.++..+-.+.- ..-......++.....+.. ..+..+...|+..|-++..+++.....+.+.--+..|+..++..+.
T Consensus 149 L~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~ 227 (713)
T KOG2999|consen 149 LRAFSELMEHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ 227 (713)
T ss_pred HHHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch
Confidence 666666654221 1111111223333333332 2345678899999999998777778888888889999999999999
Q ss_pred HHHHHHHHHHHHhhcCChh
Q 005144 264 AIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~ 282 (712)
.+...|...+-.+....++
T Consensus 228 ~i~~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 228 RIQTCAIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHHHHHHHhhCCh
Confidence 8988888888777665443
No 249
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.23 E-value=0.75 Score=42.70 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCccc-cchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHH
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 223 (712)
.....-+.+++.||+..|+.+|......... ..+......++.||..+..........+...+++..|+..|.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 4446677888899999999999765432111 123467788899999988644444555556789999999999999999
Q ss_pred HHHHHHHHHHhh
Q 005144 224 QRAAAGALRTLA 235 (712)
Q Consensus 224 ~~~a~~~L~~L~ 235 (712)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=2.1 Score=45.07 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=81.8
Q ss_pred cCCHHHHHhh-hcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhH
Q 005144 103 GGAVPALVKH-LQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (712)
Q Consensus 103 ~g~i~~L~~l-L~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (712)
.|++..+++. ..+.+. +||+.|..+|+-+| .++.. +...+++|..+.+. .
T Consensus 550 ~~vv~~lLh~avsD~nD------------DVrRAAViAlGfvc~~D~~~---------lv~tvelLs~shN~-------h 601 (926)
T COG5116 550 LGVVSTLLHYAVSDGND------------DVRRAAVIALGFVCCDDRDL---------LVGTVELLSESHNF-------H 601 (926)
T ss_pred chhHhhhheeecccCch------------HHHHHHHHheeeeEecCcch---------hhHHHHHhhhccch-------h
Confidence 4566777776 445444 89999999999999 66543 66677888776653 7
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhcHHHHHhCCCHHHHHHhhc
Q 005144 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR 259 (712)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~l~~L~~ll~ 259 (712)
++...+.+|+-.|.+.... -++..|-.+..+.+.-||+.|+.+++.+.. ++++-...+ .++.+.+...+.
T Consensus 602 VR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~ 672 (926)
T COG5116 602 VRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIV 672 (926)
T ss_pred hhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHh
Confidence 8888888888888644332 244567777788888899999999988764 333322222 123445555554
Q ss_pred CCC
Q 005144 260 SED 262 (712)
Q Consensus 260 ~~~ 262 (712)
+..
T Consensus 673 ~Kh 675 (926)
T COG5116 673 DKH 675 (926)
T ss_pred hhh
Confidence 443
No 251
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.52 E-value=0.9 Score=34.99 Aligned_cols=53 Identities=32% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCcHH
Q 005144 609 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHAIS 661 (712)
Q Consensus 609 ~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~a~~~~~~~ 661 (712)
.++.+.+.+++.+|++++++.|...|...+...+ +++.+..+|.+...+..++
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ee 65 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEE 65 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHH
Confidence 3467789999999999999999999998887764 5677777777776665433
No 252
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.49 E-value=0.87 Score=36.27 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
...+..+.++.+.+|..++..|+.|..... .......+++..+...++++++-|-.+|+.+|..|+...++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 455667788888999999999999997444 12222345788888999999999999999999999876654
No 253
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=2.2 Score=35.26 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=66.3
Q ss_pred ecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCC--------------------
Q 005144 551 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV-------------------- 610 (712)
Q Consensus 551 ~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~-------------------- 610 (712)
.+|..|.+.+.+ +-+|-..+.|+... .+. .-.|.++.+...+|..+++|+-...-..
T Consensus 9 ~dge~F~vd~~i-AerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr 85 (158)
T COG5201 9 IDGEIFRVDENI-AERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR 85 (158)
T ss_pred cCCcEEEehHHH-HHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence 367777777654 55888888877432 122 2246778899999999999998764331
Q ss_pred -----ChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCC
Q 005144 611 -----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 643 (712)
Q Consensus 611 -----~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~ 643 (712)
+-+.+.++.-+|+|+.++-|...|+..+.+.+.
T Consensus 86 ~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 86 FFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 235677999999999999999999888877654
No 254
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.88 E-value=7.5 Score=44.34 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=120.9
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH-----HHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-----AGI 365 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-----~~~ 365 (712)
+-+.+-.-+.+.++.-|.+++..+........ ........+.+-.++... .+.+-.+...++..|..++. ..-
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 44555555667789999999998888775332 111111123333333333 55677788888888888887 122
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
...+..+.+++.+......++..+..++-.++.... -..+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------------------------------------l~~~~ 373 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------------------------------------LSKMS 373 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------------------------------------HHHHH
Confidence 223556778888888888888777777765543110 11245
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
+.+...+++++|.++..+...+.......+ ....-.-.+.++.++....+.+.+||.+|..++..+.+
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 667888999999999998888777754433 22222234667899999999999999999999887766
No 255
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.73 E-value=20 Score=34.55 Aligned_cols=134 Identities=20% Similarity=0.123 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHHHHhhcCh-hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 75 ADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
.+++.+...+..|..++.++ .....+ +..|..+...+.. +.+..+.+.+..+- .++..-
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH--
Confidence 57778999999999999866 433332 5666666666665 56666777777776 433321
Q ss_pred HHhCCChHHHHHHH--hcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh-cCCCHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAG 229 (712)
Q Consensus 153 ~~~~~~l~~L~~lL--~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~ 229 (712)
+.+..++..+ +...........++........+..+|...++. ....++.+...| .+.++.++..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHH
Confidence 2333333331 101111111123356666677889999866662 234667888888 7888889999999
Q ss_pred HHHHhhc
Q 005144 230 ALRTLAF 236 (712)
Q Consensus 230 ~L~~L~~ 236 (712)
+|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999993
No 256
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.69 E-value=2.7 Score=47.50 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=104.4
Q ss_pred HHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh--HHHHHh
Q 005144 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL 215 (712)
Q Consensus 139 ~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~l 215 (712)
+|+++. .+++..+.+++.+++..+...++..+.. ++...+++.+.+++...+. +........+ ..+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHH
Confidence 788889 8999999999999999999999877443 8999999999999963322 2211111111 233334
Q ss_pred hcCCC-HHHHHHHHHHHHHhhcCChhc-----HHHH----H--------------hCCCHHH-HHHhhcC-CCHHHHHHH
Q 005144 216 LEFTD-TKVQRAAAGALRTLAFKNDEN-----KNQI----V--------------ECNALPT-LILMLRS-EDSAIHYEA 269 (712)
Q Consensus 216 L~~~~-~~v~~~a~~~L~~L~~~~~~~-----~~~~----~--------------~~~~l~~-L~~ll~~-~~~~v~~~a 269 (712)
+..-+ .+.-..++.+|+.+..+.+.. +..+ . ....+.. +..++.. ..+..+.+|
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWa 645 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWA 645 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHH
Confidence 44433 477888999999888643321 1000 0 0111111 3333333 356778999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHHhhc
Q 005144 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (712)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (712)
++++.++...+++.++.+...|+++.+...-.
T Consensus 646 l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 646 LWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 99999999999998898999999887766554
No 257
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.78 E-value=2 Score=37.33 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCcccEEEEecCccchhhHHHhhhcC-HHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHH
Q 005144 542 ATLSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ 616 (712)
Q Consensus 542 ~~~~D~~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~ 616 (712)
|....|.+.++|..|..-|.-|+--+ .|...+++..+. ...++..-+ +=+|..|-.+|.|+-+|++-++.-.=.
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI-DRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI-DRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe-ccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 34456788889999988888888777 455556554321 122233333 568999999999999999988885556
Q ss_pred HHHHHHHHhChHhHHHHHHHHHHhc
Q 005144 617 DLLRAADQYLLEGLKRLCEYTIAQD 641 (712)
Q Consensus 617 ~l~~~A~~~~~~~l~~~c~~~l~~~ 641 (712)
.++.-|++|.++.|.+...+.|.+.
T Consensus 97 GvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHH
Confidence 8899999999999999998888765
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=88.77 E-value=30 Score=35.36 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHHc--CChHHHHHhhccC-----C--------hhhHHHHHHH
Q 005144 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA--GALQPVIGLLSSC-----C--------SESQREAALL 314 (712)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--~~l~~L~~lL~~~-----~--------~~v~~~a~~~ 314 (712)
++.+...+......+...++..|..++. ........+.+. -..+.+-.++... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999988 544566666552 2234555555321 1 2777777664
Q ss_pred H-HHHhcCCcchhhhhhh-cCChHHHHHHhCCCCHHHHHHHHHHHHHHHH----------HHHHhcCChHHHHHhhccCC
Q 005144 315 L-GQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----------AGIAHNGGLVPLLKLLDSKN 382 (712)
Q Consensus 315 L-~~l~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----------~~~~~~~~i~~L~~ll~~~~ 382 (712)
+ ..+..+++..+..+++ .+.+..+.+-|..+++++....+.+|..-.. ..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 4 4444555556665554 5677888888888888998888888875333 34455566788888776666
Q ss_pred h----hHHHHHHHHHHhcccCcchhHHHH
Q 005144 383 G----SLQHNAAFALYGLADNEDNVADFI 407 (712)
Q Consensus 383 ~----~v~~~a~~~L~~l~~~~~~~~~l~ 407 (712)
+ .+...+-..|..+|.++.+--.+-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~ 246 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFP 246 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccC
Confidence 6 899999999999998877643333
No 259
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.09 E-value=3.6 Score=36.86 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
.|.+++.|...++.. ++..+|++++++|+.+.. ||...+.+... .+ ..... ...........
T Consensus 8 yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~-------~~~~~-------~~~~~~~~~~l 70 (160)
T PF11865_consen 8 YPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKS--LD-------SKSSE-------NSNDESTDISL 70 (160)
T ss_pred hHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhccccc--CC-------ccccc-------cccccchhhHH
Confidence 466777777766654 567899999999999988 55433322111 11 00000 00001221111
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
...++. ..+++-.. .++..|+++|++..-. .-...++.++.++... ...+-.-.-..++|.++..+
T Consensus 71 -~~~~~~~~~ee~y~~----vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 71 -PMMGISPSSEEYYPT----VVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred -hhccCCCchHHHHHH----HHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHH
Confidence 112222 33343333 2478888888877653 3334556666666532 22222233345788899999
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 005144 217 EFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~ 235 (712)
+..+...++....-|+.|.
T Consensus 138 ~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 138 RTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HhCCHHHHHHHHHHHHHHH
Confidence 8777788877766666654
No 260
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=26 Score=40.24 Aligned_cols=227 Identities=15% Similarity=0.128 Sum_probs=132.7
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC----
Q 005144 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---- 261 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~---- 261 (712)
-.+|..+...+.+++..+.+..++..++.++- +.+-|...+..+..|...++.... ..-+-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 45777888888999999999999988888884 345566667777776653333111 11234456666652
Q ss_pred --------CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc----------CChhhHHHHHHHHHH---Hh-
Q 005144 262 --------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----------CCSESQREAALLLGQ---FA- 319 (712)
Q Consensus 262 --------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~a~~~L~~---l~- 319 (712)
..+.....+.+++.+...+...+..+.+++++..|...|.. ++.-+-..-...|.. ++
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 12456777788888876666777778888888888877742 111111111112221 11
Q ss_pred cCCcchhhhhhhcCChHHHHHHhCCC------------------------CHHH--HHHHHHHHHHHHH-----------
Q 005144 320 ATDSDCKVHIVQRGAVRPLIEMLQSP------------------------DVQL--REMSAFALGRLAQ----------- 362 (712)
Q Consensus 320 ~~~~~~~~~l~~~~~l~~L~~ll~~~------------------------~~~v--~~~a~~~L~~l~~----------- 362 (712)
..++.++..+-..---+.+..+|... .+.+ -..|+..+..+-.
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 12334443322111112222222110 1111 1122222221111
Q ss_pred -----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc-CcchhHHHHhhCcccccccc
Q 005144 363 -----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDG 418 (712)
Q Consensus 363 -----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~ 418 (712)
+.+...|++..+++.+-...+.++..-+..+..+++ ++.+...+-..|+++.|.+.
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleI 958 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEI 958 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHH
Confidence 556778889999999888888888888899999987 46666666667888876653
No 261
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=87.53 E-value=31 Score=34.06 Aligned_cols=204 Identities=14% Similarity=0.169 Sum_probs=137.8
Q ss_pred HHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHH---HHHhCCChHHHHHHHhcccCCc
Q 005144 98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ---LIVDNGALSHLVNLLKRHMDSN 173 (712)
Q Consensus 98 ~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~---~~~~~~~l~~L~~lL~~~~~~~ 173 (712)
..+.++|.++.++.-+....- +-+..++.+..|+- .+-..+. ..+.. -...+-.++......
T Consensus 73 qef~~~~~l~~lI~~l~~l~f------------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~- 138 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEF------------ESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENT- 138 (342)
T ss_pred HHHHhCCchHHHHHhhhcccc------------hhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccc-
Confidence 456678999999999987766 77888888888887 2222221 11111 133334444432210
Q ss_pred cccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCC---
Q 005144 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA--- 250 (712)
Q Consensus 174 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~--- 250 (712)
.++...+...+.... .++.....+...........+...++-++...|..+...+..........+...+-
T Consensus 139 -----~~iaL~cg~mlrEci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~f 212 (342)
T KOG1566|consen 139 -----PEIALTCGNMLRECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNF 212 (342)
T ss_pred -----hHHHHHHHHHHHHHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhh
Confidence 155554444454444 46777777778888888888888888889889999888887533333333333222
Q ss_pred -HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh---HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 005144 251 -LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 251 -l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (712)
.+.--.++++++--++..+...++.+..+.+. ..+.+.....+..++.+|++.+..++.+|.-...-...+
T Consensus 213 f~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 213 FAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 33356688889989999999999999876444 234444456799999999999999999999888877753
No 262
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.46 E-value=4.4 Score=37.45 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=59.9
Q ss_pred CChhHHHHHHHcCChHHHHHhhcc---------CChhhHHHHHHHHHHHhcCCcchhhhhh-hcCChHHHHHHhCCCCHH
Q 005144 279 SSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQ 348 (712)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~ 348 (712)
.+....+.+++.||+..|+.+|.. .+......+..++..+.. .......++ ..+++..|...|.+++..
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~ 173 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIK 173 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHH
Confidence 344677888899999999998863 234677888889888874 333344444 478999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005144 349 LREMSAFALGRLA 361 (712)
Q Consensus 349 v~~~a~~~L~~l~ 361 (712)
++..++..|..++
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 263
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.19 E-value=2.5 Score=39.08 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhc--CC--HHHHHhhhcCCCCCccccCCCcccH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG--GA--VPALVKHLQAPPTSEADRNLKPFEH 130 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~~~~~~~~~~~~ 130 (712)
....+..+++.+....+...+........+.+|.|++..++.|..+.+. +. +..|+.++++.+.
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~------------ 117 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV------------ 117 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcH------------
Confidence 3456677777777743322223445778899999999999999999864 34 6778888877744
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhC---CChHHHHHHH
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDN---GALSHLVNLL 166 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~---~~l~~L~~lL 166 (712)
.=|..++.+|.|+|.+.+....+... +.++.|+--|
T Consensus 118 iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 118 IRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 56778899999999555555555542 3444444433
No 264
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.12 E-value=24 Score=38.89 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChh
Q 005144 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPN 282 (712)
Q Consensus 204 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 282 (712)
+...++|.|..-+++.+..++..++..+..++..-+ ...+...++|.+..+. +..+..++.+++.+++.+...
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~--- 459 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR--- 459 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---
Confidence 345678888888889999999999999998885222 2334455777777664 456789999999999999622
Q ss_pred HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCC
Q 005144 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 346 (712)
.....-...+..+....+..++.+......+..++...... ...+....++|.++.+...+.
T Consensus 460 -lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 -LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred -HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhhhccc
Confidence 11111122334445555567888888888888777753322 245667788999988886554
No 265
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=3.1 Score=40.66 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=95.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
+...+..|.+.+.+.....+..+..|+...++....... .++-.+++-+++....|-+.|+.+++.+...-......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345667777888888888889998888644443333332 25666777788888899999999999997543332222
Q ss_pred HcCChHHHHH-hhc---cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 289 AAGALQPVIG-LLS---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 289 ~~~~l~~L~~-lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.++.++. ++. .++.-+++.+-.+|..+..+-.. ..+++.|+..++..++.++..++.+..++..
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2333333 332 23455788888888888743222 3456888888888999999888877766554
No 266
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.75 E-value=8.3 Score=35.75 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHH
Q 005144 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPL 212 (712)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L 212 (712)
..|+..|.-++..|+.+..+++..+--.+-..|...+..... +-++..++++++.+...+. ..-..+....++|.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~f---EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKF---EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCcc---ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 456666777779999999988887665666666655443332 2677789999999986443 444556677899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh--------CCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--------CNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 213 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~~~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
++.+..+++--+..|+.++..+.. ++...+.+.. ...+..++ ++...+.....+.++++-..|+.. +..
T Consensus 195 LrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhH
Confidence 999998887777777777777763 5544332221 11222222 233445667788888888888643 443
Q ss_pred H
Q 005144 284 K 284 (712)
Q Consensus 284 ~ 284 (712)
+
T Consensus 273 R 273 (315)
T COG5209 273 R 273 (315)
T ss_pred H
Confidence 3
No 267
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.36 E-value=9.2 Score=41.70 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=107.2
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcC-Ccch----hhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHH
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAAT-DSDC----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AGIA 366 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~ 366 (712)
|.|..-|+..+..+|.+|+..+.++--- +++. ...+++ +-...+.++|+++.|.+|..|..-++.+.. -.++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4566667778899999999998887522 2222 233443 334788999999999999999888888776 1111
Q ss_pred hcCC----hHHHHHhh-ccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh
Q 005144 367 HNGG----LVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 441 (712)
Q Consensus 367 ~~~~----i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (712)
-... +..+++-+ ++...+||......|-.+..+|.....+-
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le---------------------------------- 301 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE---------------------------------- 301 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH----------------------------------
Confidence 1111 11222222 44556788888888877777665532221
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHH
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 509 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 509 (712)
.++|+|-..|.+.+..||.++...|..+-...- ..+++--....++..|...+.++.+.-+..+.
T Consensus 302 -~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra--~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~ 366 (1005)
T KOG1949|consen 302 -QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA--AKFWKICPMDHILVRLETDSRPVSRRLVSLIF 366 (1005)
T ss_pred -HHHHhcchhhhccchhHHHHHHHHHHHHHhhhh--hhhhccccHHHHHHHHhccccHHHHHHHHHHH
Confidence 145667777888888888888887766521110 11122223345555666666665555444443
No 268
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.36 E-value=10 Score=41.44 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=105.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhc----HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAF-KNDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~-~~~~~----~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
|.|.+-|+-.|..||.+|+..+.++-- .+++. .+.+++ +-...+..+|.++-+.||..|..-++.....-=+..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 556667778899999999999988742 22322 222332 236778899999999999998887777643110111
Q ss_pred HHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Q 005144 285 KEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~- 362 (712)
...+-...+..+.+-+. +...++|......|..+.. ++.+. .+.+ -++|.+-..|.++...||-++...|..+-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 11110112222222222 3456888888888888875 33332 2332 245677777888999999988888877665
Q ss_pred --HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 363 --AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 363 --~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
..+..--..+.++.-|...+..+.+..+..|.+.
T Consensus 333 ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 333 RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2222222233344444444444444444444333
No 269
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.62 E-value=57 Score=35.24 Aligned_cols=259 Identities=13% Similarity=0.115 Sum_probs=133.6
Q ss_pred HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHH
Q 005144 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (712)
...+.|..+...+..+......+..... ..+...+..+..+ +.-..-+.+|..|+ ++.+. ..
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~-----------~d~~~~l~aL~~LT~~Grdi--~~ 103 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND-----------DDFDLRLEALIALTDNGRDI--DF 103 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCcCc--hh
Confidence 3456788888888877764322110100 1223333333221 33345566666777 44444 22
Q ss_pred HhCCChHHHHHHHhcccC-------------Cccc------cchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMD-------------SNCS------RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~-------------~~~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
.+.+..+.|..-+..... .... ..........+..+.|+..-+...-..-...+.+..+..
T Consensus 104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~ 183 (464)
T PF11864_consen 104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICT 183 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 566677777766643220 0000 001133344455555555433322222222345555555
Q ss_pred hhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 215 LLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 215 lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
++.. .++.....++.++-.+.....-....+. ..+..|...... .+....+-.++.||+.+.-. . ..+
T Consensus 184 iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g--~-----~~i 252 (464)
T PF11864_consen 184 ICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLG--H-----SAI 252 (464)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhcc--cccchhHHHHHHHHHcCccH--H-----HHH
Confidence 5543 3344445666666655432222222221 123444444322 26677788888898865322 1 145
Q ss_pred HHHHHhhcc------CChhhHHHHHHHHHHHhcCCcchhhhhhh-c--CChHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005144 294 QPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQ-R--GAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 294 ~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (712)
..|..+|.+ .+..+.+-|...+..+..+..+.+..-+. . -+++.+...++.+++.+-...+..+.++.
T Consensus 253 ~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 253 RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 677777732 24566778888888887665333332222 2 27788888888887777777777777666
No 270
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.56 E-value=6.2 Score=35.60 Aligned_cols=115 Identities=21% Similarity=0.144 Sum_probs=73.1
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHhc--CChHHHHHhhccC-ChhHHHHHHHHHHhcccCcchhHH
Q 005144 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQ----AGIAHN--GGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVAD 405 (712)
Q Consensus 333 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~--~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 405 (712)
..+..+.++++++++.-|-.++..+...+. ..+.+. ..+..++..++.+ ...+.+.++.+|..|.........
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456778888899888888777777777766 223232 2356677777554 467888999999888765444444
Q ss_pred HHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 406 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 406 l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
+.+..+.+.+ .++++.++.++++ +.+...++.+|..+.....
T Consensus 105 l~Rei~tp~l--------------------------~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNL--------------------------PKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccH--------------------------HHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 4443333322 2345666666654 4566677777777754333
No 271
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.33 E-value=27 Score=36.24 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc--
Q 005144 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-- 217 (712)
Q Consensus 140 L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-- 217 (712)
+-|++-.++ -..+.+.+-.+.+-+-+...+. ..-+..|+..|..++...+..-..+ +...+-.++.
T Consensus 194 ~Pnl~~~e~-D~ElfEddP~EYIrrd~e~sd~-------~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y 261 (370)
T PF08506_consen 194 FPNLCLREE-DEELFEDDPEEYIRRDLEGSDS-------DTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQY 261 (370)
T ss_dssp HHHHS--HH-HHHHHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cCccCCCHH-HHHHHccCHHHHHHhhcccccc-------CCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 556662222 1233445555555555543222 1566788888999986322211111 1122223332
Q ss_pred ----CCCHHHHHHHHHHHHHhhcCChhc------------HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 005144 218 ----FTDTKVQRAAAGALRTLAFKNDEN------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (712)
Q Consensus 218 ----~~~~~v~~~a~~~L~~L~~~~~~~------------~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (712)
+.++.-+..|+..+..|+...... ...+....++|.|. --.+..|-++..|++.+...-..-+
T Consensus 262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC
Confidence 345677788888888888633221 12222223334333 1113467889999999988854322
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 005144 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (712)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 315 (712)
. . .-.++++.++..|.+++.-+...|+.++
T Consensus 341 ~---~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 K---E-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp H---H-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred H---H-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1 1 2234899999999999988988888764
No 272
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.19 E-value=51 Score=34.26 Aligned_cols=288 Identities=16% Similarity=0.109 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhhc-C-hhhHHHHHhcCCHHHHHhhhcCCCCCcc--ccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHH
Q 005144 80 AKRATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEA--DRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (712)
Q Consensus 80 ~~~a~~~L~~l~~-~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~--~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (712)
....++++..+.. + |+.-..-. ...+..+..+|..+.+... +....+.-+.++..++..+...+ ...+.-...+
T Consensus 57 l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l 135 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFL 135 (370)
T ss_dssp HHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777766 4 54322111 2345556666655543221 11111222356666666665555 2222211111
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
...+..+.++|......... ..+...++..|..++. .+..+..+...+.+..+++- -++-||
T Consensus 136 -~~fv~~vw~lL~~~~~~~~~---D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~-------------VI~Pnl 197 (370)
T PF08506_consen 136 -PTFVQAVWNLLTKISQQPKY---DILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEK-------------VIFPNL 197 (370)
T ss_dssp -HHHHHHHHHHHTC--SSGGG---HHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHH-------------THHHHH
T ss_pred -HHHHHHHHHHHHHhhhcccc---cHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHH-------------hccCcc
Confidence 13455556666543332211 1555556666665553 22211111111111111110 123355
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc------cCChhh
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSES 307 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v 307 (712)
+. .++.. .+.+.+=.+.+-.-+... ...-|..|+..|..|+...+.....+ +...+-.++. +.++.-
T Consensus 198 ~~-~e~D~-ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 198 CL-REEDE-ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp S---HHHH-HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHH
T ss_pred CC-CHHHH-HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHH
Confidence 53 22222 222323344444444332 34567888889989875432222222 2233334443 236777
Q ss_pred HHHHHHHHHHHhcCCcch------------hhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHH
Q 005144 308 QREAALLLGQFAATDSDC------------KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVP 373 (712)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~------------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~ 373 (712)
+..|...++.++...... ...+....++|-|. --.+..|-++..|++.+..... ..-.-.+.++.
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~ 350 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPL 350 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 778888888888654221 12233344445444 1124567777778777776665 22233457889
Q ss_pred HHHhhccCChhHHHHHHHHH
Q 005144 374 LLKLLDSKNGSLQHNAAFAL 393 (712)
Q Consensus 374 L~~ll~~~~~~v~~~a~~~L 393 (712)
+++.|.+++..|...|+.++
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999999999999888765
No 273
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=84.52 E-value=26 Score=36.58 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCC----hhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 131 EVEKGSAFALGLLAVK----PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~----~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
+-|-.|+-...+++.+ ..+++.+.+.-+.+.+-++|...+...+..+ .-.+..++.+|..+|+ .++....--.-
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd-~Vy~~i~itvLacFC~-~pElAsh~~~v 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPD-DVYLQISITVLACFCR-VPELASHEEMV 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcH-HHHHHHHHHHHHHHhC-ChhhccCHHHH
Confidence 5677788888888832 2346778888889999999987665544433 2445567778888887 44432222223
Q ss_pred CChHHHHHhhcCC-CH------HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC
Q 005144 207 GGIPPLVELLEFT-DT------KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 207 ~~i~~L~~lL~~~-~~------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
..||.|.+.+... ++ .+...+..+|..++. .+.....++..|+++.+.++-.-
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhC
Confidence 5788888888642 22 377888899998885 57778888899999999876543
No 274
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.48 E-value=40 Score=32.47 Aligned_cols=171 Identities=20% Similarity=0.149 Sum_probs=102.8
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 210 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 210 ~~L~~-lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
+.|+. +-+..+++.+...+.+|..++..+.... .-+++.+..+...+....+.-+.+.+..+...++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44444 4456789999999999999996431221 2245667777777777777777888888866544321
Q ss_pred HcCChHHHHHh-----h---c--cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHH
Q 005144 289 AAGALQPVIGL-----L---S--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 357 (712)
Q Consensus 289 ~~~~l~~L~~l-----L---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L 357 (712)
+.+..++.. . . +...+.....+..+..+|...++... .+++.+..++ ++.++.++..++.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223333333 0 1 12344555556788888876666332 3568888888 788888999999999
Q ss_pred HHHHH-HHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhc
Q 005144 358 GRLAQ-AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGL 396 (712)
Q Consensus 358 ~~l~~-~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 396 (712)
..++. ..+--......+..-+. ...+.+....+.....+
T Consensus 147 ~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 147 APLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred HHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHh
Confidence 99887 22222233344444442 23355554444444333
No 275
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.41 E-value=1 Score=42.25 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh-hhhHHH
Q 005144 383 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQR 461 (712)
Q Consensus 383 ~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~-~~~v~~ 461 (712)
-.-|..|+.+|+.|+..+.|...+...+-...+ ..+...|+.++... ++-.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRl--------------------------E~l~~~L~r~l~~~e~~v~RE 191 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRL--------------------------ERLFHTLVRLLGMREDQVCRE 191 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHH--------------------------HHHHHHHHHHhccccchhHHH
Confidence 345889999999999888886665554433322 23566677877766 788899
Q ss_pred HHHHHHHHhcCCCc--ccchhhccCchHHHHHHhcCCCchhh
Q 005144 462 RVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQ 501 (712)
Q Consensus 462 ~a~~~L~~l~~~~~--~~~~l~~~~~~~~L~~ll~~~~~~~~ 501 (712)
.|+-.|.+|+..++ .+.+-.+.+.+..|+.++++.....+
T Consensus 192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 99999999998877 55566777889999999997554433
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.37 E-value=12 Score=34.74 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 156 (712)
-...|+..|--++++|+.+..+.+..+--.+...|...+... .-.-+|..++..++.+. ++++....+...
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~-------~fEyLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNS-------KFEYLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCC-------ccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 356677778888889999998888876556666665443311 11268889999999999 677778888888
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 196 (712)
.++|..++++...+. --+..++.++..+..++
T Consensus 189 eivPLcLrIme~gSE--------lSktvaifI~qkil~dD 220 (315)
T COG5209 189 EIVPLCLRIMELGSE--------LSKTVAIFIFQKILGDD 220 (315)
T ss_pred hHHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccc
Confidence 999999999987764 34455666666665433
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=84.12 E-value=18 Score=33.15 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=65.5
Q ss_pred ChHHHHHH-hCCCCHHHHHHHHHHHHHHHH---H---HHHhcC-------------------ChHHHHHhh-ccCChhHH
Q 005144 334 AVRPLIEM-LQSPDVQLREMSAFALGRLAQ---A---GIAHNG-------------------GLVPLLKLL-DSKNGSLQ 386 (712)
Q Consensus 334 ~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~---~---~~~~~~-------------------~i~~L~~ll-~~~~~~v~ 386 (712)
.-+.|+.. +.++++.+|..|+.++..|.. . ...+.+ ....|+..+ +..+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 33444444 488999999999999999887 1 111011 122233333 23345566
Q ss_pred HHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 005144 387 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 466 (712)
Q Consensus 387 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~ 466 (712)
...++++..|..+....+- +.| .-..++..+..++.+.|++++..++.+
T Consensus 120 ~q~lK~la~Lv~~tPY~rL--~~~-----------------------------ll~~~v~~v~~~l~~~d~~v~v~~l~~ 168 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL--PPG-----------------------------LLTEVVTQVRPLLRHRDPNVRVAALSC 168 (182)
T ss_pred HHHHHHHHHHHccCChhhc--CHh-----------------------------HHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6666666666543222110 011 122345667778888999999999999
Q ss_pred HHHhcCCC
Q 005144 467 LAHLCSPD 474 (712)
Q Consensus 467 L~~l~~~~ 474 (712)
++.+....
T Consensus 169 ~~~l~s~~ 176 (182)
T PF13251_consen 169 LGALLSVQ 176 (182)
T ss_pred HHHHHcCC
Confidence 99986543
No 278
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.07 E-value=36 Score=33.35 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=119.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcCCcchhhhhh
Q 005144 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV 330 (712)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (712)
.|-..|.++++.+|..|+..|+.+...-+.. .....-+..|++.+.+ .+......++.++..+.... ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh-
Confidence 4556788899999999999999887654421 1112223344444332 24555555566666666322 111101
Q ss_pred hcCChHHHHHHh--CCCCHHHHHHHHHHHHHHHH---HHHHh--cCChHHHHHhh-ccCChhHHHHHHHHHHhcccC---
Q 005144 331 QRGAVRPLIEML--QSPDVQLREMSAFALGRLAQ---AGIAH--NGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN--- 399 (712)
Q Consensus 331 ~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~---~~~~~--~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~--- 399 (712)
...++..+.+-. ++.....|..+...+..+.. ..+.. .+.+..+++++ ..+||+-...+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 111222232222 12335667777777777777 23322 34566777777 567888888777777777543
Q ss_pred cchhHHHHhhCccccccccchhhhh------hhhHHHHH-HHHH--HHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 005144 400 EDNVADFIRVGGVQKLQDGEFIVQA------TKDCVAKT-LKRL--EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 470 (712)
Q Consensus 400 ~~~~~~l~~~~~i~~L~~~~~~~~~------~~~~~~~~-l~~l--~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l 470 (712)
.+..+.+.+. +.......|.+.. .++-+... ...+ ........+|.|++-|.++.+.+|..++.+|...
T Consensus 158 ~~~~e~lFd~--~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c 235 (262)
T PF14500_consen 158 SEFAEDLFDV--FSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKAC 235 (262)
T ss_pred chhHHHHHHH--hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3333334331 1111111222111 11222222 2222 2344677899999999999999999999999887
Q ss_pred cCCCc
Q 005144 471 CSPDD 475 (712)
Q Consensus 471 ~~~~~ 475 (712)
+...+
T Consensus 236 ~~~y~ 240 (262)
T PF14500_consen 236 IENYG 240 (262)
T ss_pred HHHCC
Confidence 65443
No 279
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.68 E-value=1.1e+02 Score=37.07 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=94.7
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHH--hcCChHHHHHhhccCChhHHHHHHHHHHhc-ccCcchhHH
Q 005144 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIA--HNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVAD 405 (712)
Q Consensus 332 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~ 405 (712)
.+++|.|...|.+.+..+|..|...++.+.. ..+. .......++.-+.+.+..+|..++....++ ..++.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 4788999999999999999999999999988 2222 123344555666778899999999888877 334433332
Q ss_pred HHhhCccc-cccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-----Cc-ccc
Q 005144 406 FIRVGGVQ-KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----DD-QRT 478 (712)
Q Consensus 406 l~~~~~i~-~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~-----~~-~~~ 478 (712)
....-.+. ...+...+.....-............+...++..+...+++....||..|..-|..+-.. .. +..
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~ 417 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE 417 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 22211111 111100000000000000001111111222666677778888999999999988877442 11 211
Q ss_pred hhhccC-chHHHHHHhcCCCchhh
Q 005144 479 IFIDGG-GLELLLGLLGSTNPKQQ 501 (712)
Q Consensus 479 ~l~~~~-~~~~L~~ll~~~~~~~~ 501 (712)
+-..-. +-..|+.++...+.+.+
T Consensus 418 ~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 418 ITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccchhHHhhHhhccccHH
Confidence 111112 23467777777666665
No 280
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.54 E-value=47 Score=32.57 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=119.8
Q ss_pred hhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHh
Q 005144 65 VLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (712)
Q Consensus 65 ~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (712)
.|...+.+ +|...|..|+..|..+... +... ....-+..|+..+.+.-. |+.....++.++..|
T Consensus 3 ~Lg~~Lts--ed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~----------D~~~~~~~l~gl~~L 67 (262)
T PF14500_consen 3 SLGEYLTS--EDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD----------DHACVQPALKGLLAL 67 (262)
T ss_pred chhhhhCC--CCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc----------cHhhHHHHHHHHHHH
Confidence 34444444 3777899999999887763 2111 112224555555543222 224444556666666
Q ss_pred cCChhhHHHHHhCCChHHHH-HHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC-CCH
Q 005144 144 AVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDT 221 (712)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~ 221 (712)
..-..... +....++ .+.+..+.... ....|..+...+..+...+...- .-...+.+..+++.+.. .||
T Consensus 68 ~~~~~~~~-----~~~~~i~~~l~~~~~~q~~---~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDP 138 (262)
T PF14500_consen 68 VKMKNFSP-----ESAVKILRSLFQNVDVQSL---PQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDP 138 (262)
T ss_pred HhCcCCCh-----hhHHHHHHHHHHhCChhhh---hHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCH
Confidence 62222111 1122222 23332222111 12666777777777775432211 11223566677777754 578
Q ss_pred HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc--------C-C-CH--HHHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--------S-E-DS--AIHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~--------~-~-~~--~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
.-...+...+..+....+. ....+.+.+.+. . + ++ -.+......|.+....++.....
T Consensus 139 RnLl~~F~l~~~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~--- 208 (262)
T PF14500_consen 139 RNLLLSFKLLKVILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF--- 208 (262)
T ss_pred HHHHHHHHHHHHHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH---
Confidence 8777777777777653331 223344444332 1 1 22 23444455555554454554333
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 005144 290 AGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 290 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (712)
.+|.|++-|.+....++..++.+|...+..
T Consensus 209 --~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 209 --AFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred --HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999887753
No 281
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.48 E-value=13 Score=36.69 Aligned_cols=146 Identities=20% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC--C
Q 005144 133 EKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG--G 208 (712)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~ 208 (712)
+--++..+.-+.-++.....+...+ ....+..++....... ....+..+++++.|+.. ++..+..+.... .
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS----PPANQMLALRLLANLFS-HPPGRQLLLSHFDSS 154 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS----SHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC----cHHHHHHHHHHHHHhhC-CCccHHHHHhcccch
Confidence 4456666655556666655544433 2455555555443221 22777789999999887 555555554332 2
Q ss_pred hHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhcH-HHHHhCCCHHHHHHh-hcC-CCHHHHHHHHHHHHHhhcCCh
Q 005144 209 IPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILM-LRS-EDSAIHYEAVGVIGNLVHSSP 281 (712)
Q Consensus 209 i~~L~~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l-l~~-~~~~v~~~a~~~L~~L~~~~~ 281 (712)
+...+..+... +..++..++.++.|++...-... ..-.....+..+... ... .++++...++-+||+|....+
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 33333333333 67899999999999974111111 000011134555553 333 589999999999999996654
Q ss_pred hH
Q 005144 282 NI 283 (712)
Q Consensus 282 ~~ 283 (712)
..
T Consensus 235 ~~ 236 (268)
T PF08324_consen 235 SA 236 (268)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 282
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.25 E-value=57 Score=36.90 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=94.8
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHH
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALR 232 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~ 232 (712)
++..+.+++...... - ..+...|..+.... .+... .+..+..++.+ .++.++..|+-+++
T Consensus 396 av~~i~~~I~~~~~~--------~-~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT--------D-DEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHHHTT-S---------H-HHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC--------H-HHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 355666777664331 1 22455555555433 22222 34466666654 34667777777777
Q ss_pred HhhcCChhc---------HHHHHhCCCHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHh
Q 005144 233 TLAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (712)
Q Consensus 233 ~L~~~~~~~---------~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 299 (712)
.+....-.. .........++.+...+. ..+.+-+..++.+|+|+.. +. .++.+..+
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~ 529 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPY 529 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTT
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhH
Confidence 776311111 011111234555655554 4567888899999999942 22 67778888
Q ss_pred hccC---ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC--CCCHHHHHHHHHHHHH
Q 005144 300 LSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGR 359 (712)
Q Consensus 300 L~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~ 359 (712)
+.+. +..+|..|++++..++...++ .+.+.++.++. ..++++|..|..+|..
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 8765 678899999999988653332 23466777773 3678899888776644
No 283
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=22 Score=35.06 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=90.3
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcC
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNG 369 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~ 369 (712)
+...+..|.+.+++....+...+..++...++...... ..++-.+++-+++....|.+.|+.++..+.. ..+..
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44456667777888888888888888765443333222 2345566667788888999999999999888 22222
Q ss_pred ChHH-HHHhhcc---CChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 370 GLVP-LLKLLDS---KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 370 ~i~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
.... +..+++. .+.-|++.|-.+|..+..+... ..++
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------------------------~~~L 207 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------------------------QKLL 207 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------------------------HHHH
Confidence 3333 3344433 3456777787777766543222 2356
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
+.|+..+++.++.++..++.+..+..
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccc
Confidence 67888889999998888887766653
No 284
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.80 E-value=1.1e+02 Score=36.11 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=95.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcch-hhhhhhcCChH
Q 005144 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVR 336 (712)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~ 336 (712)
-++-.+++|..++..|+--...-| ..+.+...+..+=-.|.+.+.+||..+..+|..|...+... .....-..+=.
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 345688999999988887765444 45666778888888888999999999999999998754322 22233345556
Q ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 337 PLIEML-QSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 337 ~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
.++++. .+-+..|+..++..+.-+....+....-+..+-.++.+.++.++..|...+..=
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 777777 455666665554443333335555666677888999999999988888877543
No 285
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.99 E-value=64 Score=33.00 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=108.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhcHHHHHhC--CCHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC--NALPTLILMLRSE-----D--------SAIHYEAVGV 272 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--~~l~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (712)
+..+.+.|.+..+.+...++..|..++. +.......+... --.+.+..++... . +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888888888888899999999997 444555555432 2244555665321 1 2888888877
Q ss_pred HHHhhc-CChhHHHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc----chhhhhhhcCChHHHHHHhCCCC
Q 005144 273 IGNLVH-SSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (712)
Q Consensus 273 L~~L~~-~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~~~~l~~L~~ll~~~~ 346 (712)
+..+.. .++..+..+.. .+.+..+..-|..++.++......++..-...++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666654 45556666665 5678888888888889999999998886443333 33445666778888888777666
Q ss_pred H----HHHHHHHHHHHHHHH
Q 005144 347 V----QLREMSAFALGRLAQ 362 (712)
Q Consensus 347 ~----~v~~~a~~~L~~l~~ 362 (712)
+ .+++.+-..|..++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 6 788888888877775
No 286
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=81.61 E-value=1.1e+02 Score=37.99 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=44.5
Q ss_pred CChHHHHHH----hCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 333 GAVRPLIEM----LQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 333 ~~l~~L~~l----l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
+.++.++.+ +++.++.++.-+......+-. ........+..|+..+-+++..-...|+.+|..|+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 455555554 478889998888777766666 333445567777777767776666788999998875
No 287
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.70 E-value=1.2e+02 Score=35.33 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=72.6
Q ss_pred HHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC----
Q 005144 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---- 303 (712)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---- 303 (712)
..+|..|...+.++...+.+..++..++.++ -+.+-|...++++..|...++.. +...-+-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 4456666667788888888888888888877 34556666777777776554431 1112334556666552
Q ss_pred --------ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 304 --------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 304 --------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
..........+++.+...+...+..+.+.+++..|...|
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 123445566688888766667777888899988888877
No 288
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.03 E-value=3.6 Score=32.79 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
.+...+..+.++.+.+|..++..|.++....+ .......+.+..+.+.+.++++=+=..|..+|..|+...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34556777888989999999999999987776 3333345667888899999999999999999999998653
No 289
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.84 E-value=67 Score=35.93 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred ChHHHHHhhcCC----CHHHHHHHHHHHHHhhc----CChhcHHHHHhCCCHHHHHHhh----cCCCHHHHHHHHHHHHH
Q 005144 208 GIPPLVELLEFT----DTKVQRAAAGALRTLAF----KNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGN 275 (712)
Q Consensus 208 ~i~~L~~lL~~~----~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~ 275 (712)
.+..+..++.++ .+.++..|+-+++.+.. +.+.....+. ...++.+...+ ...+.+.+...+.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 455777777653 35567777777766653 1111111111 12445555444 33466667888999999
Q ss_pred hhcCChhHHHHHHHcCChHHHHHhhc-c--CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC--CCHHHH
Q 005144 276 LVHSSPNIKKEVLAAGALQPVIGLLS-S--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLR 350 (712)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~ 350 (712)
+.. +. .++.+...+. + .+..+|..|+++|..++...+.. +-+.++.++.+ .++++|
T Consensus 473 ~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHH
Confidence 953 22 3445555554 2 25689999999999987533332 33566677643 678899
Q ss_pred HHHHHHHHH
Q 005144 351 EMSAFALGR 359 (712)
Q Consensus 351 ~~a~~~L~~ 359 (712)
..|..+|..
T Consensus 534 iaA~~~lm~ 542 (574)
T smart00638 534 MAAVLVLME 542 (574)
T ss_pred HHHHHHHHh
Confidence 888776643
No 290
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.69 E-value=62 Score=31.72 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhcC--------hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHH
Q 005144 81 KRATHVLAELAKN--------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (712)
Q Consensus 81 ~~a~~~L~~l~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (712)
..++..|..+..- ++.|-.+.-.+.+|.++.-+.++.+ -..+ .....++..|+.+|...
T Consensus 80 e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~-------i~~~-~~~~~~A~~La~~a~~~----- 146 (262)
T PF14225_consen 80 ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNP-------IQPD-QECIEIAEALAQVAEAQ----- 146 (262)
T ss_pred HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccccc-------cccc-HHHHHHHHHHHHHHHhC-----
Confidence 4455555555442 1234444445567777777776661 0001 23446778888888322
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
..+.|.+++........ +...+....++..|+.-.. |.. ....+..|+.+|.++-+.++..++.+|.
T Consensus 147 -----~~~~La~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 147 -----GLPNLARILSSYAKGRF-RDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred -----CCccHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 12233333332222111 2233677777777665543 221 1234557899999988999999999999
Q ss_pred HhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (712)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 275 (712)
.+....+-.+. ...+.+..+.++++.+.- .+|+..|-+
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~ 251 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDE 251 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHH
Confidence 99864444333 445578888888877643 344444433
No 291
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.42 E-value=4.6 Score=38.05 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcC-------CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhH
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGG-------AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g-------~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~ 150 (712)
-++.|+++|+.++-.+.+.+.+...+ .+..|++++..... +-.|+.|+..|.+++ .++...
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~-----------~v~REfAvvlL~~La~~~~~~~ 208 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRED-----------QVCREFAVVLLSNLAQGDEAAA 208 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHhcccHHHH
Confidence 38899999999998777777666654 34456666655443 378999999999999 555554
Q ss_pred -HHHHhCCChHHHHHHHhcccC
Q 005144 151 -QLIVDNGALSHLVNLLKRHMD 171 (712)
Q Consensus 151 -~~~~~~~~l~~L~~lL~~~~~ 171 (712)
..-.+.+.+..|+.++.+...
T Consensus 209 r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 209 RAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHhhchHHHHHHHHHHHHH
Confidence 444577899999999976543
No 292
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.26 E-value=99 Score=33.49 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=72.5
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCC
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 172 (712)
+|+....+ .|.+..+++-+.+.+. .||..++.+|..+.+.-.--+..+..+.+..|.+-+-+..+
T Consensus 82 dpeg~~~V--~~~~~h~lRg~eskdk------------~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~- 146 (885)
T COG5218 82 DPEGEELV--AGTFYHLLRGTESKDK------------KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK- 146 (885)
T ss_pred ChhhhHHH--HHHHHHHHhcccCcch------------hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH-
Confidence 45543332 4556666666666666 89999999999999544433444555666667666655555
Q ss_pred ccccchhHHHHHHHHHHHHHhhc--CCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 005144 173 NCSRAVNSVIRRAADAITNLAHE--NSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 173 ~~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~ 236 (712)
.++..|+.+|+.+-.. +++++ ....|+.+++ +++.+||.. +|.|+..
T Consensus 147 -------~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~---allni~v 196 (885)
T COG5218 147 -------AVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRL---ALLNISV 196 (885)
T ss_pred -------HHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHH---HHHHeee
Confidence 8999999999888743 33322 2235666665 456788884 4566664
No 293
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=79.02 E-value=87 Score=32.68 Aligned_cols=247 Identities=15% Similarity=0.084 Sum_probs=127.5
Q ss_pred HHHHHHHhhhhhhcccccc-----hHHhHHHHHHHHHHHHHhhcChhhHHHHHhcC---CHHHHHhhhcCCCCCccccCC
Q 005144 54 ALLSEVSAQVNVLNTTFSW-----LEADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADRNL 125 (712)
Q Consensus 54 ~~~~~v~~lv~~L~~~~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~i~~L~~lL~~~~~~~~~~~~ 125 (712)
.....++.+++.++..+.. ...+.+...+|++.|+.+..+++....+-+.- .+...+..+..++.+
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~------ 105 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP------ 105 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC------
Confidence 3444455555555444432 12367788999999999988776665554332 345556666555552
Q ss_pred CcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHh
Q 005144 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (712)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (712)
..+....+|+|..---.+. +.....+..++..+..-.+.-.. ..+....+.++.++....+..- ...
T Consensus 106 ----K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s---~si~~erL~i~~~ll~q~p~~M--~~~ 172 (372)
T PF12231_consen 106 ----KSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPS---KSIISERLNIYKRLLSQFPQQM--IKH 172 (372)
T ss_pred ----HHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 2677777777765443332 23344455566655443321111 1777788888888886554321 111
Q ss_pred c-CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcH---HH---HHhC----C-----CHHHHHHhhcCCCHHHHHHH
Q 005144 206 E-GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQ---IVEC----N-----ALPTLILMLRSEDSAIHYEA 269 (712)
Q Consensus 206 ~-~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~---~~---~~~~----~-----~l~~L~~ll~~~~~~v~~~a 269 (712)
. -.+|.++..+-+....++..|...+..+...-+..+ .. ..+. + ..+.|..++.+.+......-
T Consensus 173 ~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~ 252 (372)
T PF12231_consen 173 ADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQ 252 (372)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHH
Confidence 2 356778777777777777766665555442111111 11 1111 1 12224445555222222222
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 005144 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (712)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (712)
+|...-+.-+++.....-.-...+...-..++++++.++..|..+...+.
T Consensus 253 iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 253 IWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22222221122211111111223444445556778888888888777766
No 294
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.96 E-value=41 Score=30.79 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCC-------------------ChHHHHHHHhcccCCccccchhHHHHHHHHHHH
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNG-------------------ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~-------------------~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~ 190 (712)
.+|..|+.++..|- +...+-...-+.. .-..|+..|..+... .+....+.++.
T Consensus 55 kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~-------~~l~q~lK~la 127 (182)
T PF13251_consen 55 KVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP-------PVLTQLLKCLA 127 (182)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc-------HHHHHHHHHHH
Confidence 89999999999998 4332211111111 122345555544332 77888999999
Q ss_pred HHhhcCCcchhHHHhcCChHH----HHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 191 NLAHENSSIKTRVRMEGGIPP----LVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~i~~----L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
.+....|..+- ..|.++. +..++.+.|+.++..++.++..+..
T Consensus 128 ~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 128 VLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99987776553 2355544 4456678899999999999998875
No 295
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.34 E-value=12 Score=42.38 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
..+.++.++.-+|+++| .+.+..+. .+|.|++-|.-+... .++.+.+-+++.+|... .+...
T Consensus 943 ~~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam~d 1005 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAMTD 1005 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHHHH
Confidence 44578999999999999 66555443 478899888766542 77777777777887632 23445
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh-CC-CHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN-ALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~-~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 279 (712)
..+|.+...|.++++-+|+.+...|.+|.+. .++. .| ++-.++-.+-+.++++|..|=..++.+...
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~------~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF------GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh------hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999851 1222 12 122233333456888999888888887653
No 296
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=78.21 E-value=1.1 Score=44.15 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=44.7
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCc-hhhhchhhcHHHH
Q 005144 641 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEI 694 (712)
Q Consensus 641 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~-~f~~l~~~~~~~l 694 (712)
.++++||+.++-=+.....+.|.+.|+.|+..|+.+|+.++ ++.-++.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 38999999999999999999999999999999999999976 4445544444333
No 297
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=77.57 E-value=2e+02 Score=36.68 Aligned_cols=252 Identities=12% Similarity=0.090 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhc----CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 131 EVEKGSAFALGLLA----VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 131 ~v~~~a~~~L~~l~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
.+...|+..|..++ ..++....-.+..++.++..++...... ++++..+.|+.++...... .+ .
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~~---nI--k 1219 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRVN---NV--K 1219 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHh---hh--h
Confidence 68888888888887 2233222223345678888888755443 9999999999988753222 12 2
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhc-----HHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 005144 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (712)
Q Consensus 207 ~~i~~L~~lL~----~~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L 276 (712)
.|++.+..++. ..++.+...|-.++..+..+.-.. ...+. .++..|..+.... +.++-..|+..|+++
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 47888888775 345778888888887776421110 11222 2355555555443 456666777777755
Q ss_pred hcCCh---------------------------hHH-----HHHHHcCChHHHH---HhhccCChhhHHHHHHHHHHHhcC
Q 005144 277 VHSSP---------------------------NIK-----KEVLAAGALQPVI---GLLSSCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 277 ~~~~~---------------------------~~~-----~~~~~~~~l~~L~---~lL~~~~~~v~~~a~~~L~~l~~~ 321 (712)
+..-. +.. ........++.|. .+..++..+||..|..+|..+-..
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 21000 000 0000011233333 334567889999999988776532
Q ss_pred C-cchh----hhhhhcCChHHHHHHhCCC-------------------CH----HHHHHHHHHHHHHHH---HHHHh---
Q 005144 322 D-SDCK----VHIVQRGAVRPLIEMLQSP-------------------DV----QLREMSAFALGRLAQ---AGIAH--- 367 (712)
Q Consensus 322 ~-~~~~----~~l~~~~~l~~L~~ll~~~-------------------~~----~v~~~a~~~L~~l~~---~~~~~--- 367 (712)
. .... ..+. .+++-++...++.. +. -+.+.+..+|.+++. ..+-.
T Consensus 1378 yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~ 1456 (1780)
T PLN03076 1378 HGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP 1456 (1780)
T ss_pred hhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1221 2222 23444444444210 01 133455555666555 11111
Q ss_pred --cCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005144 368 --NGGLVPLLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 368 --~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
.+.+..|..++...+..+...+..+|.+|.
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 123334444445677778888888887774
No 298
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.52 E-value=14 Score=33.08 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=45.9
Q ss_pred HhhhhhhHHHHHHHHhhhh-hhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhh
Q 005144 438 EKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 438 ~~~~~~~~~~Lv~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~ 512 (712)
+.+..-++..|+..|++.+ ..-...++.++.++......+..-.-...+|.+++.+...+...++.--.-|..|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445556777888888773 23344566666666533332222233467899999998766677777666655543
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=77.10 E-value=61 Score=29.90 Aligned_cols=72 Identities=22% Similarity=0.231 Sum_probs=56.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
..++.+++++.+++..++..|+.++..+....=.+ -...+|.++.+..++++.++..|...+..+....+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 35677888888999999999999999877521111 1235899999999999999999999999997665543
No 300
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.92 E-value=21 Score=35.23 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcC--CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (712)
.+.-++..++-++.++.....+...+ +...+..++...... ..+..+..+++++.|+-.++..+..+...
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~ml~lR~l~NlF~~~~~~~~~~~~ 150 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS--------SPPANQMLALRLLANLFSHPPGRQLLLSH 150 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT--------SSHHHHHHHHHHHHHHTTSCCCHHHHHCT
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC--------CcHHHHHHHHHHHHHhhCCCccHHHHHhc
Confidence 36778888887777877766665543 355666666554421 23378889999999999777777776654
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHhhc-C-CCHHHHHHHHHHHHH
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPLVELLE-F-TDTKVQRAAAGALRT 233 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~-~-~~~~v~~~a~~~L~~ 233 (712)
.. ..+...+......... ....++..++..+.|++......+ ..-.....+..+.+.+. . .+++....++-+|++
T Consensus 151 ~~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGt 228 (268)
T PF08324_consen 151 FD-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGT 228 (268)
T ss_dssp HH-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 32 1344444332221100 122788888889999984211111 00011123455666332 2 689999999999999
Q ss_pred hhcCC
Q 005144 234 LAFKN 238 (712)
Q Consensus 234 L~~~~ 238 (712)
|....
T Consensus 229 L~~~~ 233 (268)
T PF08324_consen 229 LLSSS 233 (268)
T ss_dssp HHCCS
T ss_pred HhccC
Confidence 99643
No 301
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.71 E-value=1.2e+02 Score=32.90 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=44.2
Q ss_pred hHHHHHHHHhh------hhhhHHHHHHHHHHHhcCCC--cccchhhccC--chHHHHHHhcCCCchhhhhhHHHHHhhh
Q 005144 444 VLNHLLYLMRV------AEKGVQRRVALALAHLCSPD--DQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 444 ~~~~Lv~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~--~~~~L~~ll~~~~~~~~~~a~~~L~~L~ 512 (712)
.+..|..+|.+ .+..+.+-|+..+..+..+. +....+.-.- .++.|...+..+++.+-......+.++-
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 45566666632 24455667888888875555 2222222222 5788888888888888777777777776
No 302
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.90 E-value=12 Score=42.46 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHH
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l 341 (712)
+.++..+.-++++++-.++...+ ..+|.|++-|+.+ +..+|.+...+++.+|.... ..-...+|.+-..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHH
Confidence 45788888899999876555333 3688888888754 56777777778888876432 1224577999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHhhccCChhHHHHHHHHHHhccc
Q 005144 342 LQSPDVQLREMSAFALGRLAQAGIAHNGGLV--PLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
|.++++-||+.+.-.|.+|.+..++.-.|.- .++-.+-+.++.++..|-..+..+-.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999993333333322 23333346778899988888888743
No 303
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=1.5e+02 Score=33.17 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh--cCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 233 (712)
.|.++.++++|......+...++..-.+.|++.+.++.. ..+..-.-+.+.-+++.++..++++..-++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 467888889995443322211222333455666655553 223323334555566777788888888899999999999
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005144 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (712)
+..+-+++ ..-..+.+....++++.+-.|+..|+-++..+..++
T Consensus 487 ~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 96533332 222234666777888877788889988888887654
No 304
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.08 E-value=1.1e+02 Score=38.31 Aligned_cols=244 Identities=16% Similarity=0.065 Sum_probs=120.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHH-HHHHHHHHhcCCcchhhh
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE-AALLLGQFAATDSDCKVH 328 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~-a~~~L~~l~~~~~~~~~~ 328 (712)
....++..+...++..+..+..+++.++...++. . .-.+..+.++.-+.+..+.+.+. -..+++.+-.........
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3455666777789999999999999997653321 1 11224455666666654444443 333555544322111111
Q ss_pred hhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH--HHHHhcCChH----HHHHhhccCChhHHHHHHHHHHhcccCcc
Q 005144 329 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ--AGIAHNGGLV----PLLKLLDSKNGSLQHNAAFALYGLADNED 401 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~i~----~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 401 (712)
-.....+..+..+.++ ..|.|+..++.++.-++. ..+. .+.+. .+..++-+..+ ........+...-....
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccch
Confidence 1123456677777766 556999988888877666 1111 11222 22222222111 11111122221111111
Q ss_pred hhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhh
Q 005144 402 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 481 (712)
Q Consensus 402 ~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 481 (712)
....+...-+ +.| +++... .-+..+.+..+-...-++.++++.++.++..+|.++..-..- ..-
T Consensus 1032 ~~~alittlg-peL-~~N~~~------------d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n 1095 (2067)
T KOG1822|consen 1032 DEDALITTLG-PEL-GPNGDK------------DSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVN 1095 (2067)
T ss_pred hHHHHHHhcc-ccc-CCCCcc------------cchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hcc
Confidence 1111111111 111 000000 001112333344444556677899999999999988432221 111
Q ss_pred ccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 482 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 482 ~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
-.-.++.|..++.++.-..|+....++.+|...
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 122367778888777777777777777666653
No 305
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=70.67 E-value=2.9e+02 Score=36.29 Aligned_cols=175 Identities=21% Similarity=0.195 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005144 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (712)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 297 (712)
++++.++......+. ...-......+.+..+...+.++.-.++..+...+++++..++...-.-...-.+..+-
T Consensus 540 ~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s 613 (2341)
T KOG0891|consen 540 DTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLT 613 (2341)
T ss_pred CCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhc
Confidence 455555554433332 12223344556677777888888889999999999999987775433322222233222
Q ss_pred HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHHhcCCh
Q 005144 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIAHNGGL 371 (712)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i 371 (712)
.+-.++...+...++.-+..+....+......+ ...+..++..+.+.++.+...+..++..|+. ....+ ..+
T Consensus 614 ~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~ 691 (2341)
T KOG0891|consen 614 ELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELF 691 (2341)
T ss_pred hhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHH
Confidence 222233333333333333332221111111111 2344666677777888888888899999888 11122 445
Q ss_pred HHHHHhh-ccCChhHHHHHHHHHHhcccCc
Q 005144 372 VPLLKLL-DSKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 372 ~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 400 (712)
+.+.+.+ ...+..-+..+.++++++....
T Consensus 692 ~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 692 SLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 5555555 3456777888899999987543
No 306
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.15 E-value=40 Score=30.35 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHh--cCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
.+..++..+.+.+.++ ++..+-.++..+...+....+ ..+.+ .-.+..++++|+.+++. .++..
T Consensus 22 ~l~~l~~ri~~LL~s~--~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~-----------~~~~~ 87 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSK--SAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPP-----------SVLEA 87 (165)
T ss_pred HHHHHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCH-----------HHHHH
Confidence 3444444444444443 455577777777776664222 23323 23678899999886653 78888
Q ss_pred HHHHHHHhc----CChhhHHHHHhCC---ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc
Q 005144 136 SAFALGLLA----VKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198 (712)
Q Consensus 136 a~~~L~~l~----~~~~~~~~~~~~~---~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 198 (712)
++.++..|. +.|+..+.+.... +++.++.++++ . .....++.+|..+...++.
T Consensus 88 ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~--------~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 88 AIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--S--------SCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--c--------ccHHHHHHHHHHHHHHCCc
Confidence 888888887 5677666665443 34444555543 1 5556777777777765554
No 307
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.58 E-value=1.6e+02 Score=30.82 Aligned_cols=224 Identities=15% Similarity=0.135 Sum_probs=115.7
Q ss_pred cccHHHHHHHHHHHHHhcCChhhHHHHHhCCC---hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHH
Q 005144 127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA---LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (712)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 203 (712)
|.+..+..+|+++++.+..+++....+-+.-. +...+..+.+...+ -.+....+|+|..--. ...+
T Consensus 57 p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~------K~i~~~~l~~ls~Q~f-----~~~~ 125 (372)
T PF12231_consen 57 PFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP------KSICTHYLWCLSDQKF-----SPKI 125 (372)
T ss_pred CcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHcCCC-----CCcc
Confidence 45668999999999999988877555443322 33334444333221 1666777777654332 1123
Q ss_pred HhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 204 RMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 204 ~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (712)
.....+..++..+. -++..+....+.++.++....+..-..-.+ --++.++..+-+....+|..|...+..+..
T Consensus 126 ~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 126 MTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 33444455555443 245678888999999998654443211111 146667666666677777776655544432
Q ss_pred C---ChhHHHHH---HHc----C-----ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC
Q 005144 279 S---SPNIKKEV---LAA----G-----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (712)
Q Consensus 279 ~---~~~~~~~~---~~~----~-----~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 343 (712)
. +....+.+ .+. + +.+.|..++.+.+......-.|...-+-.+++....--.-...+...-.+++
T Consensus 205 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn 284 (372)
T PF12231_consen 205 CLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN 284 (372)
T ss_pred HhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhc
Confidence 1 11111111 111 1 2223555555522222222223222111122211110111234445555668
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005144 344 SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~ 362 (712)
++++.++..|..+=..+..
T Consensus 285 ~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 285 SSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999988877666665
No 308
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=67.87 E-value=1.7e+02 Score=30.98 Aligned_cols=133 Identities=13% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhcC----hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhH--H
Q 005144 78 AAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ--Q 151 (712)
Q Consensus 78 ~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~--~ 151 (712)
+.+..|+-....+..+ ..+++.+.+.-+.+.+-+++.+.+.+. +. .|.-.+.-++..|.-.|..|+.. .
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~---dc--pd~Vy~~i~itvLacFC~~pElAsh~ 100 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPG---DC--PDDVYLQISITVLACFCRVPELASHE 100 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCC---CC--cHHHHHHHHHHHHHHHhCChhhccCH
Confidence 4577888888888773 456777888888999999997765521 00 12234666777788888777753 3
Q ss_pred HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC
Q 005144 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (712)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 219 (712)
.++ +.||.|+.++....+.+. .+.-.+...+-.+|..++. .+.....++..|+++.+.++-.-+
T Consensus 101 ~~v--~~IP~llev~~~~~d~d~-e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 101 EMV--SRIPLLLEVMSKGIDTDY-EDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred HHH--HhhhHHHHHHHhcCCCch-hhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCC
Confidence 333 358999999976655322 2223578889999999987 577777888999999998765433
No 309
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=67.73 E-value=1e+02 Score=28.42 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=85.1
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~ 238 (712)
++.++++..+.+. .++..|+.++..+....--+. ..++|.++.+..++++.++..|...+..+....
T Consensus 10 l~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 10 LKNILELCLSSDD--------SVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 5556666655555 888888888877775322222 137899999999999999999999999998644
Q ss_pred hhcHHHHHhCCCHHHHHHhhc---CC-CHHH---HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC--------
Q 005144 239 DENKNQIVECNALPTLILMLR---SE-DSAI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------- 303 (712)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~ll~---~~-~~~v---~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------- 303 (712)
+.....-... ++..-..+-+ .+ .... ....+..+..+...+...+.. ++..++..+...
T Consensus 77 ~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~ 150 (187)
T PF12830_consen 77 ESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSES 150 (187)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhcccccccc
Confidence 4332222222 2333333222 11 1111 455566666666655555555 455566666542
Q ss_pred ChhhHHHHHHHHHHHhc
Q 005144 304 CSESQREAALLLGQFAA 320 (712)
Q Consensus 304 ~~~v~~~a~~~L~~l~~ 320 (712)
...-.....++..|++.
T Consensus 151 ~~~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 151 SPSDLDFLLFLAENLAT 167 (187)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 23334556666667764
No 310
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=2.4e+02 Score=32.20 Aligned_cols=277 Identities=14% Similarity=0.130 Sum_probs=128.4
Q ss_pred ChHHHHHHHhcccCCcc-----ccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCC-----HHHHHHH
Q 005144 158 ALSHLVNLLKRHMDSNC-----SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAA 227 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a 227 (712)
.++.+.++|..+.+.-. ......++...|..+.-.+...++.-.-+ -..++.....+|.+.. ..+...|
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~f-l~~fv~~~W~LL~~~s~~~kyD~Lvs~A 313 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPF-LPDFVTATWNLLVSTSPDTKYDYLVSKA 313 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhh-HHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 46666666653332111 11122333444444444443333321111 1123444445554422 3355566
Q ss_pred HHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhh
Q 005144 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (712)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 307 (712)
+..|.+++. .+.....+...+++..+.+...-++-..|.. -.++.+.+-+..+-+-|+..|.+.
T Consensus 314 l~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e---------------DeElFED~pleYiRRDlEGsDvdT 377 (960)
T KOG1992|consen 314 LQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREE---------------DEELFEDNPLEYIRRDLEGSDVDT 377 (960)
T ss_pred HHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchh---------------hHHHhccCHHHHHHHhcccCCcch
Confidence 777777663 3444444445555555554443333333221 145556667888888888777766
Q ss_pred HHH-HHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-C--CCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCCh
Q 005144 308 QRE-AALLLGQFAATDSDCKVHIVQRGAVRPLIEML-Q--SPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNG 383 (712)
Q Consensus 308 ~~~-a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~ 383 (712)
|+. |+..+..|+...+.....++. .-+..+++-. + +.+..-+..+...+..++.+.-...+|+..-.++..
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd---- 452 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD---- 452 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc----
Confidence 555 555777888654333322321 2223333322 2 233444555555555555521112222221111111
Q ss_pred hHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHH
Q 005144 384 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 463 (712)
Q Consensus 384 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a 463 (712)
.+-.-+-..+..|-+..-+...+.+++.+..+.- |..+-.++. --..++.++..|.++...|...|
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~--FR~ql~~~~------------lm~~~p~li~~L~a~s~vvhsYA 518 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYT--FRNQLGKEH------------LMALLPRLIRFLEAESRVVHSYA 518 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeee--ecccCChHH------------HHHHHHHHHHhccCcchHHHHHH
Confidence 1111222333444332233334555555554321 111111111 12257778888888888888888
Q ss_pred HHHHHHh
Q 005144 464 ALALAHL 470 (712)
Q Consensus 464 ~~~L~~l 470 (712)
+.++-.+
T Consensus 519 A~aiEki 525 (960)
T KOG1992|consen 519 AIAIEKL 525 (960)
T ss_pred HHHHHhc
Confidence 8887766
No 311
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=65.88 E-value=62 Score=27.86 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=56.2
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcc-hhhhhhhcCChHHHHHHhCC---CCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.++++.++..|+.+|-.+..+... ....+....++..|+.++.. .++.|+..+...+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 566778888888999999999988888865544 55566666888889998864 578899999888888776
No 312
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=65.20 E-value=56 Score=32.51 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=50.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcH-HHHHhCCCHHHHHHhhc------------CCCHHHHHHHHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR------------SEDSAIHYEAVGVI 273 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~ll~------------~~~~~v~~~a~~~L 273 (712)
-++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+++-+.+. +++..+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 367999999999999999999999999996333222 23667777776655443 23455667777777
Q ss_pred HHhh
Q 005144 274 GNLV 277 (712)
Q Consensus 274 ~~L~ 277 (712)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 313
>PRK09169 hypothetical protein; Validated
Probab=64.50 E-value=4.2e+02 Score=34.38 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHH
Q 005144 345 PDVQLREMSAFALGRL 360 (712)
Q Consensus 345 ~~~~v~~~a~~~L~~l 360 (712)
-+++-..+++++|+.+
T Consensus 412 fnaQ~vANaLnALsKW 427 (2316)
T PRK09169 412 LNAQGVANALNALSKW 427 (2316)
T ss_pred cChHHHHHHHHHHhcC
Confidence 3455555566655543
No 314
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=64.39 E-value=1.1e+02 Score=39.80 Aligned_cols=196 Identities=18% Similarity=0.127 Sum_probs=108.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
+.+.+..+...+.+..-.++..+...+++++..++...-.......+..+-.+..++-..+...+..-+..+....+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 33444455555666667788888888888887666322111111122222222222222222222222222222222211
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH-
Q 005144 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~- 362 (712)
... -...+..++..+.+.+..+...+..+++.|+.....-.....+ ..++.+.+.+.+ .+..-+.++.+++.++..
T Consensus 643 ~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 643 SPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred Hhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 111 1334566777777888888888888999998654433333444 566777777744 566778899999999988
Q ss_pred ------HHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhcccCcch
Q 005144 363 ------AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 363 ------~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
.......++..+++.+.. ....++..++..++++......
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 112222234444444433 3467788888888877544433
No 315
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.40 E-value=1.3e+02 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHh
Q 005144 445 LNHLLYLMRVAEKGVQRRVALALAHL 470 (712)
Q Consensus 445 ~~~Lv~ll~~~~~~v~~~a~~~L~~l 470 (712)
+.-+-.+..+.++++...|..++..+
T Consensus 1105 l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1105 LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 34444445556777777777776655
No 316
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.31 E-value=1.7e+02 Score=34.62 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccc
Q 005144 343 QSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 419 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~ 419 (712)
++-.+.+|..+...|+-... ..+.+...+..+-=.|++.+..||..++.+|..|..+.+....+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l----------- 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL----------- 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH-----------
Confidence 56789999999999999888 6777777777777778999999999999999999876544322211
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCc
Q 005144 420 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 498 (712)
Q Consensus 420 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 498 (712)
.-...=.+++.+. .+-+..|+...+..+-.+... . +....=+..+..++.+.++
T Consensus 366 --------------------FtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~-g----~L~d~di~~Vy~Li~d~~r 420 (1048)
T KOG2011|consen 366 --------------------FTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS-G----LLSDKDILIVYSLIYDSNR 420 (1048)
T ss_pred --------------------HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-c----ccChhHHHHHHHHHhccCc
Confidence 1112334566666 333555555544433222111 1 2334446788899999999
Q ss_pred hhhhhhHHHHHh
Q 005144 499 KQQLDGAVALFK 510 (712)
Q Consensus 499 ~~~~~a~~~L~~ 510 (712)
.++..|..-+..
T Consensus 421 ~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 421 RVAVAAGEFLYK 432 (1048)
T ss_pred chHHHHHHHHHH
Confidence 998887776654
No 317
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.33 E-value=32 Score=30.18 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=57.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (712)
.++..|.+-+.+.++.++..|+..|-.++.+.. .....+...+.+..|..++.. .++.|+..++..+...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 356688888899999999999999999986333 346667778889999999988 68899999888887765
No 318
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=61.08 E-value=1.6e+02 Score=31.24 Aligned_cols=215 Identities=13% Similarity=0.061 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCC------hh
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK------PE 148 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~------~~ 148 (712)
|+..|......|..+-. ....|..+. ..+...+.+.+...... .-....++.++.+..+ ++
T Consensus 146 D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~-----------~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 146 DPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERH-----------NGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp THHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS-------------STHHHHHHHHHHHHTT--SS--HH
T ss_pred CHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccc-----------cCHHHHHHHHHHHHhccCCCCcHH
Confidence 77778888888888766 455555443 33455666666644432 2344677777777732 22
Q ss_pred hHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 005144 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAA 228 (712)
Q Consensus 149 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 228 (712)
.... . ...++.+.+...-. ........++..++..++.....+ +..+++.=-..++.-...-+
T Consensus 214 h~~f-l----~~vllPLh~~~~~~-------~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL 276 (409)
T PF01603_consen 214 HKQF-L----RKVLLPLHKSPHLS-------SYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFL 276 (409)
T ss_dssp HHHH-H----HHTTGGGGGSTGGG-------GTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHH
T ss_pred HHHH-H----HHHHHHHhcCCcHH-------HHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHH
Confidence 2222 1 12233333333321 444566677777776566544322 22333333345554444455
Q ss_pred HHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhcc----
Q 005144 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSS---- 302 (712)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~---- 302 (712)
.-+..+...-+...-.-....+...+...+.+++..|.+.|+..+.| +.....+.+ ..++|.+..-|..
T Consensus 277 ~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 277 NELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 55555553222211111122356777788889999888887765422 322222211 1245666655532
Q ss_pred -CChhhHHHHHHHHHHHhcCCcc
Q 005144 303 -CCSESQREAALLLGQFAATDSD 324 (712)
Q Consensus 303 -~~~~v~~~a~~~L~~l~~~~~~ 324 (712)
-+..++..+..++.-+...++.
T Consensus 352 HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHTTSHH
T ss_pred HhhHHHHHHHHHHHHHHHHhCHH
Confidence 2667888888888877755443
No 319
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=61.07 E-value=1.1e+02 Score=26.64 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=57.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (712)
.++..|.+-|.++++.++..|+.+|-.+..+- ......+.+.+.+..|..++.. .++.|+..++..+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45668888899999999999999999988632 3456677788889999998874 57889998888887765
No 320
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.00 E-value=8.8 Score=31.31 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhh
Q 005144 461 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 502 (712)
Q Consensus 461 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 502 (712)
-..+..+..|+..++.-..+++.|+++.|+.||.+.|.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345677888999999888889999999999999999998854
No 321
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.79 E-value=45 Score=28.73 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=58.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHHcCChHHHHHhhcc---CChhhHHHHHHHHHHHhc
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAA 320 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~ 320 (712)
++..|.+-++++++.++..|+..|-.+...... +...+....++..|+.++.. .+..++..+...+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999999876554 66777777888889999975 377899988888887764
No 322
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.74 E-value=4.8e+02 Score=33.13 Aligned_cols=110 Identities=17% Similarity=0.080 Sum_probs=64.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
...++..+...++..+..+..+++.++...+.. ..+. +..+.+++-+.+ .++-.|.--.-+++.+-.........-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~a--~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFVA--SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 345566667788999999999999998632222 1111 134445554444 455555554555555533322211111
Q ss_pred HHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcC
Q 005144 288 LAAGALQPVIGLLSSC-CSESQREAALLLGQFAAT 321 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 321 (712)
.-...+..++.+.+++ ++.++.++..++.-+...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 1223466777777776 458999999998887743
No 323
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.67 E-value=81 Score=25.48 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=49.8
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 273 (712)
....+..|++....++......++..|..+.. .+.....+.+-|+.+.|-++-..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566677777778777788889999999885 777788888888888877766555666655444333
No 324
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.53 E-value=41 Score=29.50 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhc
Q 005144 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 320 (712)
Q Consensus 249 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 320 (712)
.++..|.+-+.+.++.++..|+..|..+..... .+...+.+..++..|..++.. .+..++..+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 356778888888999999999999999887544 367788888999999999987 688899998888888764
No 325
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=56.26 E-value=88 Score=27.35 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. ......+...+++..|..++. ..++.|+..++..+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 5667777888888999999988888887653 345666777889999999886 4778899998888888776
No 326
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=17 Score=36.34 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhcHHHHHh
Q 005144 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (712)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (712)
....+.++|..++.++..+.+.|+++.++.-+. +.+|-+++.+..++++|..++..+++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 566899999999999999999999999988775 456889999999999999988888776654
No 327
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=55.67 E-value=1.8e+02 Score=29.76 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 201 (712)
.+|..|+..+..+...+.....++..+ ++..|++++...... ...++..|+.+|..++.+......
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v-----~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKV-----PMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHhccccHHH
Confidence 677777777777777777888888776 999999999876643 238999999999999985555444
No 328
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=55.63 E-value=3.3e+02 Score=30.29 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=100.0
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCH---HHHHHHHHHHHHHHH-HHHHhcCC
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV---QLREMSAFALGRLAQ-AGIAHNGG 370 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~---~v~~~a~~~L~~l~~-~~~~~~~~ 370 (712)
..+..+..-...+++.+-..+..++-....+...+.+ +.+.......+. .-++.|+..+.-++. ..+...-.
T Consensus 566 ~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~ 641 (878)
T KOG2005|consen 566 AVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMV 641 (878)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHH
Confidence 3444444434455555555555444322222222211 333343333222 122233333333333 45555556
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Q 005144 371 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 450 (712)
Q Consensus 371 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ 450 (712)
+..+-.+++-.++.+|+..--+++-|+.+... -+++..|-+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq---------------------------------------~~vlDtLsk 682 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ---------------------------------------VNVLDTLSK 682 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc---------------------------------------chHHHHHHH
Confidence 77778888889999999999999888754332 125667888
Q ss_pred HHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhc-CCCchhhhhhHHHHHhhhcccccCc
Q 005144 451 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLS 519 (712)
Q Consensus 451 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~ 519 (712)
+..+++.++-.+++.+++.+-.+..+.++ .+.+..|.+.-. +.+.-.--..+..|..|.+..-+.+
T Consensus 683 ~shd~D~eva~naIfamGLiGAGTnNARl---a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~ 749 (878)
T KOG2005|consen 683 FSHDGDLEVAMNAIFAMGLIGAGTNNARL---AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLS 749 (878)
T ss_pred hccCcchHHHHHHHHHhccccCCcchHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceecc
Confidence 88899999999999999988555554443 122333333322 2333344456677777777655443
No 329
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=55.58 E-value=1e+02 Score=30.68 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=49.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHHcCChHHHHHhhc------------cCChhhHHHHHHHHH
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLS------------SCCSESQREAALLLG 316 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL~------------~~~~~v~~~a~~~L~ 316 (712)
++|.++.++++.++.++..++.+|..+....+... ..+.+.|..+.+.+.+. +.+..+...+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999987544322 22566776655554443 234556666677777
Q ss_pred HHh
Q 005144 317 QFA 319 (712)
Q Consensus 317 ~l~ 319 (712)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 774
No 330
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=55.01 E-value=1.3e+02 Score=29.06 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHH
Q 005144 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRT 233 (712)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~ 233 (712)
..+.++++++++.++.....-...-+-+....++..++ .|-++.|.+++.+++ .-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34689999999765531000000012222333444443 356678888888775 5589999999999
Q ss_pred hhcCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHh
Q 005144 234 LAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 234 L~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L 276 (712)
++...+..+..+++. +..++.. +...+..+-...+..+..|
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 998888888887764 4444443 5444444333333444444
No 331
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=53.96 E-value=1.1e+02 Score=24.78 Aligned_cols=64 Identities=25% Similarity=0.213 Sum_probs=45.8
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-----HHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 331 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
+...+..|+.|.+.+++.....+...+..++. ..+.+-|+.+.|.++-..-++..+..+-..+.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45677888999988887788899999999888 55666677777666655556666555544443
No 332
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.22 E-value=2.3e+02 Score=27.48 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhhcccccchH-----HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCccc
Q 005144 55 LLSEVSAQVNVLNTTFSWLE-----ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~ 129 (712)
....+|.++..|......-. .+......|+..|+ .+.+..++|.++++++.++...-. ...
T Consensus 29 ~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa----------q~re~~A~~~li~l~~~~~~~~~~----l~G 94 (249)
T PF06685_consen 29 REEITPELLKILEDAIERANELLDDEEYNLHFYALYLLA----------QFREERALPPLIRLFSQDDDFLED----LFG 94 (249)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH----------HHhhhhhHHHHHHHHcCCcchHHH----HHc
Confidence 34456666666666543210 11222344555555 344566789999999776541000 000
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH
Q 005144 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (712)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (712)
+-+-+....++..++ .|-++.|..++.++... .-++..++.+|..+...++..|..++
T Consensus 95 D~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~------~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 95 DFITEDLPRILASVG-----------DGDIEPLKELIEDPDAD------EYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred chhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHH------HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 012222233333333 45577788888776542 26677888999999987887777554
No 333
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=52.19 E-value=25 Score=28.85 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 643 SLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 643 ~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
+.+++..++.+|..++.+.|.+.|..++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999876
No 334
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=52.11 E-value=11 Score=39.26 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
..+-.+..+.+++++..+..++.+++.++...+..+-+..+-..++.++..+.+++-+.+..++..+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 34555556788999999999999999865555444444555667778888887877777777777664
No 335
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.02 E-value=4e+02 Score=29.87 Aligned_cols=116 Identities=10% Similarity=-0.001 Sum_probs=79.8
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Q 005144 371 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 450 (712)
Q Consensus 371 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ 450 (712)
+..++.+|.+.+..+|...+.+..|+..+-....++.+.- + . .-...++.|+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~--~--------------------~-----~~~~Lv~ll~E 353 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHY--K--------------------Q-----KLNDLVGLLVE 353 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhH--H--------------------H-----HHHHHHHHHHH
Confidence 4678889999999999999999999865432222222210 0 0 01224566777
Q ss_pred HHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 451 LMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 451 ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
-+.+..|.+|..|+..+..+..-+. ... ..+..+....+.+.+....||+.|...+..|-...
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 7888899999999998877755433 111 13345677788889999999999999999876543
No 336
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.09 E-value=15 Score=21.37 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHh
Q 005144 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (712)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~ 167 (712)
||..|+++|+++.+.. +++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~~----------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR----------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH----------HHHHHHHHhc
Confidence 6788999999998622 3667766664
No 337
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=49.92 E-value=3.8e+02 Score=29.31 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHh--c-ccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--R-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--~-~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (712)
+|...|-..|.++...-+ +...+..|..+.. . ........-...++...+..|..-.... .....
T Consensus 252 ~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hCCcc
Confidence 788899999999883311 2224566666655 2 1111111222366665555554421100 01112
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCChhcHH----HHHhCCCHHHHHH----hhcCCCHHHHHHHHHHHH
Q 005144 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENKN----QIVECNALPTLIL----MLRSEDSAIHYEAVGVIG 274 (712)
Q Consensus 208 ~i~~L~~lL~~~--~~~v~~~a~~~L---~~L~~~~~~~~~----~~~~~~~l~~L~~----ll~~~~~~v~~~a~~~L~ 274 (712)
.+..+...+.+. +..++..++..+ .....+.....- ..+..++.+.+-. -....+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 333444455555 566777777777 444432222211 1222344444310 011246789999999999
Q ss_pred HhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 005144 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (712)
Q Consensus 275 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (712)
.|+...+... .-+-+.+..|..-|.++.++++...-.+|..++..
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9998876531 12345778888888888899999988888888753
No 338
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.81 E-value=66 Score=27.97 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=55.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~ 277 (712)
++..+.+-+.++++.++..|+.+|-.++.+- ......+...+++..+++++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 5668888899999999999999999888622 3456677778888889998853 46788888888776654
No 339
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=49.74 E-value=2.4e+02 Score=26.95 Aligned_cols=141 Identities=13% Similarity=0.202 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCC--ccccCCCcccHHHH----HHHHHHHHHhcCChhh
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS--EADRNLKPFEHEVE----KGSAFALGLLAVKPEH 149 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--~~~~~~~~~~~~v~----~~a~~~L~~l~~~~~~ 149 (712)
++.-...++..+..+...++....+...+.++-+.+.|...++. .....|--....+. ..=...||.++.++.-
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 45566677778888888888777777999999999988766321 11111111112232 2334577888888887
Q ss_pred HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 005144 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTDTKVQRAAA 228 (712)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 228 (712)
...+-+.+....+..+....+.+ ++... ++.++=...+ ..| ..|-+.|.+++..+|..|.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~-------~l~kl---il~~LDY~~~~~~R---------~iLsKaLt~~s~~iRl~aT 217 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRD-------DLLKL---ILSSLDYSVDGHPR---------IILSKALTSGSESIRLYAT 217 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchH-------HHHHH---HHhhCCCCCccHHH---------HHHHHHHhcCCHHHHHHHH
Confidence 78888889999999988765321 33332 3444422221 112 1466778889999999999
Q ss_pred HHHHHhh
Q 005144 229 GALRTLA 235 (712)
Q Consensus 229 ~~L~~L~ 235 (712)
..|+.+.
T Consensus 218 ~~L~~ll 224 (226)
T PF14666_consen 218 KHLRVLL 224 (226)
T ss_pred HHHHHHh
Confidence 9998775
No 340
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=49.59 E-value=3.7e+02 Score=29.46 Aligned_cols=168 Identities=20% Similarity=0.108 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCChhcHHHHHhC
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (712)
++...+-..|..+...-+ +..++..|..+-. -.++.++...+..|..=.. ....-.
T Consensus 252 ~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHhCCc
Confidence 777777777777765311 2234455555554 1345677655555543210 111112
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCCh-hHH---HHHHHcCChHHHHH----hhccCChhhHHHHHHHH
Q 005144 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSP-NIK---KEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (712)
Q Consensus 249 ~~l~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~-~~~---~~~~~~~~l~~L~~----lL~~~~~~v~~~a~~~L 315 (712)
..+.++..-+.+. +..++..++..+ ........ ... ...+..++.+.+-. --...+...|..+..+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3445555555555 556666666666 33333222 222 22334555555410 11123678899999999
Q ss_pred HHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
+.++...+... .-+.+.+..|..-|.+..++++..+-.||..++.
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99997665532 1235677888888888999999999999999998
No 341
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.59 E-value=1.3e+02 Score=25.96 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=54.1
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|...|-.+..+. ......+...+++..|..++... .+.|+..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999888887653 34556777788999999998653 23488888888877666
No 342
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=48.59 E-value=24 Score=36.92 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchh
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 688 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~ 688 (712)
+..+||+.++..|.+|..+.|.+.|++|+.++. +...+|..|++
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q 228 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQ 228 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 678999999999999999999999999998873 33456666666
No 343
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=48.56 E-value=3.2e+02 Score=28.02 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005144 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (712)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 297 (712)
+++-....+.++..+..+.+.....-.....-..++.++.+. ...+|+.|..++..+...++.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 344445566666666543222111111122456778888777 8899999999999998777653 2222444455
Q ss_pred Hhhc
Q 005144 298 GLLS 301 (712)
Q Consensus 298 ~lL~ 301 (712)
..+.
T Consensus 251 ~~l~ 254 (339)
T PF12074_consen 251 KWLS 254 (339)
T ss_pred HHHH
Confidence 5554
No 344
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=48.48 E-value=2.4e+02 Score=31.27 Aligned_cols=152 Identities=12% Similarity=0.077 Sum_probs=85.0
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhHHHHH---HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcC
Q 005144 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (712)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 333 (712)
.+.....+.+-.|+-+|.-+..+...+.... ....++..++..+. .++..+..++++|.|+..+ +..+..+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~- 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR- 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH-
Confidence 3334456667777777766665433322111 12334555555555 5577788899999999864 4444433322
Q ss_pred ChHHHHHHh----CCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhcc-----CChhHHHHHHHHHHhcccCcc
Q 005144 334 AVRPLIEML----QSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDS-----KNGSLQHNAAFALYGLADNED 401 (712)
Q Consensus 334 ~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~ 401 (712)
+..+...+ ..++..++.+......|++. +.-.+.++.+.+..++.. ++.+.....+.||++|+..+.
T Consensus 629 -~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 629 -LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred -HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 22222222 23445666555555555555 222234566655555522 334566788899999988777
Q ss_pred hhHHHHhhCcc
Q 005144 402 NVADFIRVGGV 412 (712)
Q Consensus 402 ~~~~l~~~~~i 412 (712)
...++...-.+
T Consensus 708 ~~~~~A~~~~v 718 (745)
T KOG0301|consen 708 SVIQLAKNRSV 718 (745)
T ss_pred HHHHHHHhcCH
Confidence 76666654333
No 345
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=48.19 E-value=3.1e+02 Score=27.75 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=0.0
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc-----------CChHHHHHhhc------CCC
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----------GGIPPLVELLE------FTD 220 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~lL~------~~~ 220 (712)
++..|+...-........ .++..|+.|+...+.++++.+..+... .....|...|- +.|
T Consensus 35 vi~~LL~~~L~~~~~~~f----~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~d 110 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPF----DLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLD 110 (312)
T ss_dssp HHHHHHHHHT-TT--S-H----HHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-
T ss_pred HHHHHHHHHhccccccch----HHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCC
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHh------------CCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhH
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVE------------CNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~------------~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
+--...|+.+|.++..+++..++.+.. ...++.+..+|.. .++.++.--+..|..-...++..
T Consensus 111 py~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~A 190 (312)
T PF04869_consen 111 PYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDA 190 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHHcC-ChHHHHHhhccC---ChhhHHHHHHHHH
Q 005144 284 KKEVLAAG-ALQPVIGLLSSC---CSESQREAALLLG 316 (712)
Q Consensus 284 ~~~~~~~~-~l~~L~~lL~~~---~~~v~~~a~~~L~ 316 (712)
...+...+ .++.|++..... +.-++--++..|+
T Consensus 191 V~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLG 227 (312)
T PF04869_consen 191 VNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLG 227 (312)
T ss_dssp HHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHH
No 346
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=47.75 E-value=54 Score=30.86 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=51.4
Q ss_pred hhHHHHHhCCChHHHHHHHhcccCCc----------cccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc
Q 005144 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (712)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~----------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 217 (712)
..++.+...|++..++.+|..+.... ......++...+...|..+|.++..++..+... ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 44566778899999999998765533 111123778889999999999888888766542 332223322
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC
Q 005144 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
......-..+..++..+..+|..-...+.+. .+..++.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 2211111245566666666666665555544 37778887766
No 347
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.48 E-value=3.7e+02 Score=28.47 Aligned_cols=208 Identities=11% Similarity=0.054 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCChhh--HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 005144 135 GSAFALGLLAVKPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (712)
Q Consensus 135 ~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (712)
.+-..|..+..++.. ....++...+..|+.++.+.++ .-+.....+|.++-......+..+. ......+
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~--------rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~ 179 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDP--------RERDYLKTILHRIYGKFPNLRSFIR-KSINNIF 179 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTH--------HHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHH
Confidence 344445555433322 1222334456777788877766 6677777788777765555554433 3344556
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 213 VELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 213 ~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.+.+... ...-....++.++.+..+...........-...+++.+.+.+. .........++..+...++.....
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~---- 255 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP---- 255 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH----
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH----
Confidence 6666533 3445566777888777543322211111112345556665543 223444455555555444443222
Q ss_pred CChHHHHHhhcc---CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005144 291 GALQPVIGLLSS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (712)
Q Consensus 291 ~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 359 (712)
.+-.+++. .+..-...-..-+..+...-+...-.-+...+...+..++.+.+..|.+.|+....|
T Consensus 256 ----~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 256 ----VIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp ----HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred ----HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 22233332 122222222223344433222111112223455677777788888888877766554
No 348
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=46.93 E-value=19 Score=34.87 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=55.1
Q ss_pred cEEEEecCccchhhHHHhhhcC-HHHHHhccCCCC---CCCCCceecC-CCCHHHHHHHHHHHhcCCCCCC-hhhHHHHH
Q 005144 546 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR---EKDARDIEIP-NIRWEVFELMMRFIYTGSVDVT-LDIAQDLL 619 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~---e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~l~ 619 (712)
-++..+++..|.+-+.+|.+.- ...-.||.+++. ....++..+. +++...|+.+|+|.-+|-+.-+ .-.+-+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 4566667777777777776432 223456665432 1223456664 6999999999999999987743 34466778
Q ss_pred HHHHHhChH
Q 005144 620 RAADQYLLE 628 (712)
Q Consensus 620 ~~A~~~~~~ 628 (712)
+++||+.++
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 888887763
No 349
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.93 E-value=97 Score=28.32 Aligned_cols=72 Identities=17% Similarity=0.038 Sum_probs=51.9
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
-.++.+.+-|...+..-+--|...+..+.......+..-+-..++..|...|.+.++++...++.+|..|+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 467888888887777777777777777665422222222225677888888899999999999999999865
No 350
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=45.98 E-value=2.4e+02 Score=25.85 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
..+|.+++-|...+..-+..|...+..|.......+-.-.=..++..+-..|.+.++++...++.+|..|+..++.....
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 46677888887777666667777777666431122211122346677778888999999999999999997665554444
No 351
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=45.50 E-value=32 Score=27.74 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcC------------ChhhHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHF 674 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~------------~~~~~~~~~~~a~~--~~~~~l~~~~~~~i~~~~ 674 (712)
.+++..|+.|+.+.|...|..++..++ +.+....++.--.. .+...+.+.+..|+..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 467899999999999999999997653 23333333332211 234578888888887553
No 352
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.32 E-value=93 Score=27.07 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=61.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHH
Q 005144 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPL 374 (712)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L 374 (712)
+.++......|-.+.. .+.. -..++..|..-++++++.++..|+..|-.++. ..+...+++..|
T Consensus 16 ~~dw~~ileicD~In~----~~~~-----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 16 EEDWEAIQAFCEQINK----EPEG-----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCHHHHHHHHHHHHc----CCcc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 4456655555555532 1111 12356778888899999999999998888887 566677888889
Q ss_pred HHhhcc------CChhHHHHHHHHHHhccc
Q 005144 375 LKLLDS------KNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 375 ~~ll~~------~~~~v~~~a~~~L~~l~~ 398 (712)
++++.. .+..|+..++..+..-+.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999853 467899988888876653
No 353
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.23 E-value=2.4e+02 Score=32.08 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=89.0
Q ss_pred cCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
...|.-|+.+|.+.+. .+.+.+-..+..+.....- .-.+..|+..--....
T Consensus 3 ~~~~~~l~~~l~s~~~------------~~~~~~~~~~~~~~~~~~~------~~l~~~l~~y~~~t~s----------- 53 (668)
T PF04388_consen 3 QASITELLSLLESNDL------------SVLEEIKALLQELLNSDRE------PWLVNGLVDYYLSTNS----------- 53 (668)
T ss_pred cccHHHHHHHhcCCch------------hhHHHHHHHHHHHhhccch------HHHHHHHHHHHhhcCc-----------
Confidence 3457788889988877 6666666666655522100 0124455554433333
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-C
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-E 261 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~ 261 (712)
..++.+|..+ ..|..+ .++..|-..+.. +.-|..++..|+.+....+.....+.+..+++.|+++|.. .
T Consensus 54 ~~~~~il~~~--~~P~~K------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~ 123 (668)
T PF04388_consen 54 QRALEILVGV--QEPHDK------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT 123 (668)
T ss_pred HHHHHHHHhc--CCccHH------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc
Confidence 3345555433 233222 233355555554 4678889999999998888888899999999999998875 4
Q ss_pred CHHHHHHHHHHHHHhhcC
Q 005144 262 DSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~ 279 (712)
+..+...|+.+|..|.-.
T Consensus 124 ~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 124 SITVVSSALLVLIMLLPH 141 (668)
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 677778888888877543
No 354
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=45.16 E-value=57 Score=30.66 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (712)
..+...+...|..++.++..+...+.+. ++.++..+.......-..+..++..+..+|......+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 3677899999999999998888887764 44333333332222224556677777778877766665544 88888888
Q ss_pred ccC
Q 005144 301 SSC 303 (712)
Q Consensus 301 ~~~ 303 (712)
...
T Consensus 152 ~~~ 154 (207)
T PF01365_consen 152 RKH 154 (207)
T ss_dssp ---
T ss_pred HHc
Confidence 763
No 355
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.07 E-value=29 Score=34.71 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 226 AAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
+..+.+++||...++.++.+.+.|+++.++.-. .+.+|-+++..+.++.+|...+.+++..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 367799999999999999999999999887754 567899999999999999998887765554
No 356
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.40 E-value=1.5e+02 Score=25.79 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCC-CCH-H--HHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDV-Q--LREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~-~~~-~--v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. +.....+....++..|..++.+ ... . |++.+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4666788888899999999999888887654 4555667777888999998853 333 3 88888877777665
No 357
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.60 E-value=2.6e+02 Score=32.36 Aligned_cols=158 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
.+..+...+.+++..+....+.++.+++.-..-.... ...-++.-..-....-..++.....+|..++..+++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred HH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHH
Q 005144 288 LA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGI 365 (712)
Q Consensus 288 ~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~ 365 (712)
.. .+....++.++-+++.++...|...|...... .|-.+.+-.+++..-...-....++|..+.. ..
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~----------~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~- 588 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV----------DGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKF- 588 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh-
Q ss_pred HhcCChHHHHHhhcc
Q 005144 366 AHNGGLVPLLKLLDS 380 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~ 380 (712)
.+-.+.+++.+.+
T Consensus 589 --~~p~pr~vr~~~D 601 (727)
T PF12726_consen 589 --FEPCPRMVRCLMD 601 (727)
T ss_pred --hcchHHHHHHHHH
No 358
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=43.53 E-value=99 Score=26.63 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C-ChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
+..|.+-|.+.++ .++..|+..|-.+. + ++.+...+....++..|..++...... ..++.
T Consensus 39 ~r~l~krl~~~n~------------~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~------~~Vk~ 100 (133)
T smart00288 39 VRLLKKRLNNKNP------------HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL------PLVKK 100 (133)
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc------HHHHH
Confidence 5566677777766 89999999999988 3 577888888889999999998875542 13888
Q ss_pred HHHHHHHHHhh
Q 005144 184 RAADAITNLAH 194 (712)
Q Consensus 184 ~a~~~L~~l~~ 194 (712)
.++..+...+.
T Consensus 101 kil~li~~W~~ 111 (133)
T smart00288 101 RILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 359
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=43.01 E-value=2.4e+02 Score=30.27 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHhcCCcc-hhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 305 SESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
...|..++.+|+.++..-+. ....+. -+.|+..|++....-|..++-++...+.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~ 155 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAK 155 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 35677888899988865322 211121 1268888988888888888888888887
No 360
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=42.44 E-value=3e+02 Score=31.36 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=86.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
.-|.-|+.+|.+.+..+...+-..+..+...+.+. -++..|++.. ..++. .++.+|..+- .|.-
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~----~~~~il~~~~--~P~~-- 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQ----RALEILVGVQ--EPHD-- 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcH----HHHHHHHhcC--CccH--
Confidence 45667889999998888877777776555322111 2355555543 33332 3344555442 2210
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 362 (712)
..++..|-+.+. .+.-|..++..|+.+....+.....+.+..+++.|+++|. +.+..+...|+.+|..|.=
T Consensus 69 ----K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 69 ----KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ----HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 113444444444 3577889999999999888888888999999999999995 4666777777766665543
No 361
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=42.19 E-value=5.3e+02 Score=28.78 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHH
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVRM---EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 256 (712)
+++--|+.+|+-+..++..+...... ...+..++..+. .++..+..++++|.|+-. ++..++.+... ...+..
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSR--LESILD 634 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHH--HHHHhh
Confidence 66777888888887755544333321 224445555554 557778889999999986 46666555432 222222
Q ss_pred hh----cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-----ChhhHHHHHHHHHHHhcCCcchhh
Q 005144 257 ML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 257 ll----~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
.+ ...+..++........|++.. ..+.-.+.++.+.+...+... +.+.......+|++++..+ ....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-ASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc-HHHH
Confidence 22 223445555444444444321 111112245555555555421 2334455666888888644 3444
Q ss_pred hhhhcCChHHHHHHhCC
Q 005144 328 HIVQRGAVRPLIEMLQS 344 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~ 344 (712)
.+.+.--+..+.+-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 45555556777776644
No 362
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.15 E-value=3e+02 Score=28.37 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=71.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcCCcch
Q 005144 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDC 325 (712)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~ 325 (712)
.+...+.+.+...|..|+..|..= +.. ...+|.++..+.+. +.........++..|..+..-.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD----~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTD----PGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccC----CCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 344444445566666655554321 221 22567777777542 3445555566666676533222
Q ss_pred hhhhhhcCChHHHHHHhCC----------CCHHHHHHHHHHHHHHHHHH-----HHhcCChHHHHHhhccC--ChhHHHH
Q 005144 326 KVHIVQRGAVRPLIEMLQS----------PDVQLREMSAFALGRLAQAG-----IAHNGGLVPLLKLLDSK--NGSLQHN 388 (712)
Q Consensus 326 ~~~l~~~~~l~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~L~~ll~~~--~~~v~~~ 388 (712)
....+ +.++|.++.++-. +...+|+.|+..|..++... -........+.+.+.++ .......
T Consensus 252 le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 252 LEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred hHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 23233 4488888888721 33578999999999888711 11112223344444322 2334666
Q ss_pred HHHHHHhcc
Q 005144 389 AAFALYGLA 397 (712)
Q Consensus 389 a~~~L~~l~ 397 (712)
|+..|..|.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 666666554
No 363
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=42.09 E-value=3.7e+02 Score=26.97 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChh--HHHHHHHcCChHHHHHhhccC---ChhhHHHHHHHHHHHhc
Q 005144 248 CNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAA 320 (712)
Q Consensus 248 ~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~ 320 (712)
.|.+..+++.+..+ +...|-+.+.++-.+.++.+. -+..+.+.|.++.++..+-++ +..+.....-.|+.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56677777766553 566788888888888876555 344667899999999887654 34577777778999887
Q ss_pred CCcc
Q 005144 321 TDSD 324 (712)
Q Consensus 321 ~~~~ 324 (712)
++..
T Consensus 174 ~n~~ 177 (303)
T PF12463_consen 174 FNRD 177 (303)
T ss_pred CCHH
Confidence 6543
No 364
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=41.50 E-value=1.4e+02 Score=23.34 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=45.4
Q ss_pred hhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhh----ccCChhHHHHHHHHHH
Q 005144 330 VQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 394 (712)
Q Consensus 330 ~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~ 394 (712)
.+..++.++..++ ...+.++|+..+.++.++.. ..-.-..|.+.+...+ .+.+..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3456678888886 45788999999999999998 2222245677777777 3346677777766654
No 365
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.53 E-value=36 Score=20.14 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhc
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR 168 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~ 168 (712)
.+|..|+++|+++.+ ++ +++.|+..|++
T Consensus 2 ~vR~~aa~aLg~~~~-~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-EE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-Hh---------HHHHHHHHhcC
Confidence 689999999999853 22 25566666543
No 366
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=40.15 E-value=4.1e+02 Score=28.88 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=70.7
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC----------CCHHHHHHHH
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAAA 228 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~v~~~a~ 228 (712)
++.++.++...-...-...+.+++.+.+..++.|.. ++.+.-...-...+|.++.++-+ ....+|..|+
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHH
Confidence 556666665443221111233667777778888775 66665555555677887776643 2256889999
Q ss_pred HHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 005144 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (712)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L 276 (712)
..+..++.+....... ....++..+.+.+.+. ......-++..|..|
T Consensus 320 ~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 9999998644333333 3344666677766664 345666666666666
No 367
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.64 E-value=55 Score=26.85 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 118 (712)
.....+..+..++..|+.=..+++.|+++.|+.+|...+.
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 3567788899999999888889999999999999988877
No 368
>PRK09169 hypothetical protein; Validated
Probab=37.95 E-value=1.1e+03 Score=31.09 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHHh
Q 005144 262 DSAIHYEAVGVIGNL 276 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L 276 (712)
++.-..+++++|+..
T Consensus 371 npQelANaLnALSKw 385 (2316)
T PRK09169 371 NAQELANALNALSKW 385 (2316)
T ss_pred CHHHHHHHHHHHHcC
Confidence 444455566666654
No 369
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=37.95 E-value=4.6e+02 Score=26.82 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=62.5
Q ss_pred EEEEecCccchhhHHHhhhcCHHHHHhccCCCCC----CCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHHHHH--H
Q 005144 547 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE----KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL--R 620 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e----~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l~--~ 620 (712)
+.+.+.|+.|..+|.-|.- |=..++.+.-+| ..+++.-. |-+|+.|+.+|.|--||++..+...-...+ +
T Consensus 42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYFF-DRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYFF-DRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCcccccc-cCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 4555689999999988873 334555443222 12223332 558999999999999999997765433222 3
Q ss_pred HHHHhChHhHHHHHHHHHHhcCChhhHHHHH
Q 005144 621 AADQYLLEGLKRLCEYTIAQDISLENVSSMY 651 (712)
Q Consensus 621 ~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~ 651 (712)
+|=+=.||+|...|++-=.+.-..+|+-.+.
T Consensus 118 LaF~Gl~PeligDCCyEeYkDrkrENaERL~ 148 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCCYEEYKDRKRENAERLQ 148 (632)
T ss_pred hhHhcccHHHHhhhhhHHHhhhhhhhHHHhh
Confidence 4444456899998854433333344444443
No 370
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=37.39 E-value=4.7e+02 Score=26.76 Aligned_cols=223 Identities=16% Similarity=0.088 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHH
Q 005144 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (712)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~ 211 (712)
|...+.+|..+... . ....++..+..++..+..+ ..+...+.++..-+..- .+. ...++..
T Consensus 4 r~~~~~~L~~l~~~-~-----~s~~i~~~l~~~~~KE~nE-------~aL~~~l~al~~~~~~~~~~~-----~~~~~~~ 65 (339)
T PF12074_consen 4 RVLHASMLSSLPSS-S-----LSSKIVQGLSPLLSKESNE-------AALSALLSALFKHLFFLSSEL-----PKKVVDA 65 (339)
T ss_pred HHHHHHHHHhCCCc-c-----hHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHHHHHhCcCC-----CHHHHHH
Confidence 44455666666531 1 2223456677777665442 44555555554443211 211 2234567
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhc--HHHHHhCCCHHHHHHhhc----CCCHHH----HHHHHHHHHHhhcCC-
Q 005144 212 LVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNALPTLILMLR----SEDSAI----HYEAVGVIGNLVHSS- 280 (712)
Q Consensus 212 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~~l~~L~~ll~----~~~~~v----~~~a~~~L~~L~~~~- 280 (712)
+.+-+.+..+.+|+.-+..++.+.. ...+ ...+. ..+++.|.+.++ ++-+.. ...+.-.+. +....
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~-~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~ 142 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALW-ESPNSDSLKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKL 142 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHh-hccCchHHHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccc
Confidence 7777777777788877777777764 1111 11122 235666666653 232221 111122222 11100
Q ss_pred hhHHH------HHH-Hc--C--ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC--CH
Q 005144 281 PNIKK------EVL-AA--G--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DV 347 (712)
Q Consensus 281 ~~~~~------~~~-~~--~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~ 347 (712)
+.... .+. +. . .-+.+...+ .+++.....+.++..+..+.......-.....-..++.++-+. .+
T Consensus 143 ~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~ 220 (339)
T PF12074_consen 143 DKIDSKNISFWSLALDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSW 220 (339)
T ss_pred hhhhhhhhhhhhhccCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCH
Confidence 00000 000 00 0 011122221 2344455566666666543222111111123446677777666 88
Q ss_pred HHHHHHHHHHHHHHH--HHHHhcCChHHHHHhh
Q 005144 348 QLREMSAFALGRLAQ--AGIAHNGGLVPLLKLL 378 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll 378 (712)
.+|+.|..++..+.. ........+..+-+.+
T Consensus 221 ~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l 253 (339)
T PF12074_consen 221 KVRRAALSALKKLYASNPELLSKSLISGLWKWL 253 (339)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999999998888776 2223334444444444
No 371
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.37 E-value=3.3e+02 Score=33.21 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=24.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchhhccCchHHHHHHhc
Q 005144 448 LLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLG 494 (712)
Q Consensus 448 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~~~~L~~ll~ 494 (712)
|.++..++.++||--|+.++..+..++. .....++.-....+..+|.
T Consensus 1002 L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 1002 LADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 3444455566677777777766644433 2233344444455555555
No 372
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.95 E-value=2.4e+02 Score=31.90 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=59.0
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHH
Q 005144 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 405 (712)
Q Consensus 332 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 405 (712)
..+++.|..+..+.-+.++..++.++.+|.. ..-.+...+..+++-+.+++..+...|...|.+|.....+...
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 3566777777788888999999999999988 5556667788899999999999999999999999554444433
No 373
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=36.57 E-value=5.2e+02 Score=27.71 Aligned_cols=94 Identities=17% Similarity=0.062 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 299 (712)
...|..++.+|+.++..-+...... ... .|...|++.+..-|..++.+|...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 3567889999998886432221111 122 68888988887777778888877765432211110011244566666
Q ss_pred hccCChhhHHHHHHHHHHH
Q 005144 300 LSSCCSESQREAALLLGQF 318 (712)
Q Consensus 300 L~~~~~~v~~~a~~~L~~l 318 (712)
|.++....-.+....+..+
T Consensus 177 L~~~~~~~Y~El~~~l~~l 195 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRL 195 (441)
T ss_pred HcCCCCCCHHHHHHHHHHH
Confidence 7644433333333334333
No 374
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=36.20 E-value=5.6e+02 Score=31.14 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH--HhcCChHHHHHhhc
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGI--AHNGGLVPLLKLLD 379 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~--~~~~~i~~L~~ll~ 379 (712)
..+++.++++|..+..+...... ...+..+.+++...+.+++.-.+..+.-... ..+ .-..+++..++-+.
T Consensus 143 apVre~caq~L~~~l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47889999999888754322111 2345677777766665555544443332222 111 11133455666677
Q ss_pred cCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccch---hhhhhhhHHHHHHHH---------HH--HhhhhhhH
Q 005144 380 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF---IVQATKDCVAKTLKR---------LE--EKIHGRVL 445 (712)
Q Consensus 380 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~---~~~~~~~~~~~~l~~---------l~--~~~~~~~~ 445 (712)
+.+..++..|+.++.-....-......--...+..+..... ...+..+-....+.. +. .....++.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lv 298 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLV 298 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccc
Confidence 88888888888888776543211111111111222221111 011111111111111 10 11245788
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
+.+..++++.-..++..++..+..|....+
T Consensus 299 p~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 299 PRLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999989999999999998865443
No 375
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.71 E-value=2.9e+02 Score=23.78 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhh
Q 005144 348 QLREMSAFALGRLAQAGI--AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 425 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 425 (712)
-++...+.++..++.... .-.+.++.+++++.+ ++......+.+|..+...-.. +.+ ..+ ..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~---~~~-~~~----------~~- 66 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD---FRR-SSL----------SQ- 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT---SHC-CHS----------HH-
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh---hhc-hhh----------hH-
Confidence 456666677777776221 113456667777665 456666666666666532110 000 000 00
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhh----hhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhh
Q 005144 426 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQ 501 (712)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~ 501 (712)
.-.......+.. ....+++.+.+.+.... +.+...+..++.......+... +.+.+.++.+.+++. ++..+
T Consensus 67 -~r~~~l~~~l~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~~~~l~~~~~~l~--~~~~~ 141 (148)
T PF08389_consen 67 -ERRRELKDALRS-NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IINSNLLNLIFQLLQ--SPELR 141 (148)
T ss_dssp -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHSSSHHHHHHHHTT--SCCCH
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hccHHHHHHHHHHcC--CHHHH
Confidence 000000111111 13445666666666653 7888999999999887544333 446778999999994 55567
Q ss_pred hhhHHHH
Q 005144 502 LDGAVAL 508 (712)
Q Consensus 502 ~~a~~~L 508 (712)
..|+.+|
T Consensus 142 ~~A~~cl 148 (148)
T PF08389_consen 142 EAAAECL 148 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 7787765
No 376
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.00 E-value=4.5e+02 Score=25.82 Aligned_cols=64 Identities=22% Similarity=0.131 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHH
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 506 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 506 (712)
...+-.|+.++..+.+.+|..+...|..+....+.+.- ...+.+..+.+++..+..........
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd 250 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLD 250 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHH
Confidence 44566788999999999999999999999777664433 56667899999998766654333333
No 377
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=33.89 E-value=48 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=18.4
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHH
Q 005144 333 GAVRPLIEMLQSPDVQLREMSAFA 356 (712)
Q Consensus 333 ~~l~~L~~ll~~~~~~v~~~a~~~ 356 (712)
.+...+...+.++++.||++|...
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 455677777888889999888764
No 378
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.71 E-value=1e+02 Score=27.00 Aligned_cols=45 Identities=33% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 005144 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (712)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (712)
....|+..|+.+..+- -+..|+.+|.+++.++...|+.+|.+...
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 3566777777775442 37789999988889999999999988653
No 379
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.64 E-value=1.1e+03 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=18.6
Q ss_pred CChHHHHHh----hccCChhHHHHHHHHHHhccc
Q 005144 369 GGLVPLLKL----LDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 369 ~~i~~L~~l----l~~~~~~v~~~a~~~L~~l~~ 398 (712)
+..+.++.+ +++.++.++.-+......+..
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~ 464 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFK 464 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 444444443 367777787777777776644
No 380
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.00 E-value=1e+02 Score=26.81 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=54.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHcCChHHHHHhhccC-Chh---hHHHHHHHHHHHhc
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSC-CSE---SQREAALLLGQFAA 320 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~lL~~~-~~~---v~~~a~~~L~~l~~ 320 (712)
++..|.+-++++++.++..|+..|..+.... +.+...+....++..|..++.+. ... |+..+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999988765 45667777778899999988754 333 78887777776653
No 381
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=32.66 E-value=34 Score=35.98 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=51.9
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
....+-.+....++++++++..++++++......+..+.....-..++.++..+.+++-+.+..++..+..
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34445555556789999999999999997554444444445566778888888888888888888876665
No 382
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=32.63 E-value=2.1e+02 Score=25.16 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=16.0
Q ss_pred hHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 486 LELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 486 ~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
++.|+.++.++++.+...|+.+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5777777777777777777777654
No 383
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=32.43 E-value=3.1e+02 Score=23.23 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=55.3
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC---CC--hhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHc-CcHH
Q 005144 588 IPNIRWEVFELMMRFIYTGSVD---VT--LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF-HAIS 661 (712)
Q Consensus 588 l~~~~~~~~~~~l~~~Y~~~~~---~~--~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~-~~~~ 661 (712)
+.++.|+..+.+.+|+|++-.. ++ ...+.-+-.++-.=..+.++.+....+..-++++...+++..+..| +-+.
T Consensus 28 ~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P~ 107 (123)
T TIGR02425 28 TTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVPA 107 (123)
T ss_pred ccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH
Confidence 4568899999999999986322 33 4456666666666567789999999999889999999988777776 4443
Q ss_pred H
Q 005144 662 L 662 (712)
Q Consensus 662 l 662 (712)
.
T Consensus 108 a 108 (123)
T TIGR02425 108 A 108 (123)
T ss_pred H
Confidence 3
No 384
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.76 E-value=5.4e+02 Score=28.38 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=71.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcc
Q 005144 336 RPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 412 (712)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i 412 (712)
..+++-..+-++.+|..+...|+-... ..+....++...--.|.+.+..++.....++..|+....+...+++-
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f--- 354 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF--- 354 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH---
Confidence 455566677788888888888888777 56666667777777788889999999999999998765543322220
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 005144 413 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 470 (712)
Q Consensus 413 ~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l 470 (712)
-......++.++..+..-||..+.+.++.+
T Consensus 355 ----------------------------~eRFk~rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 355 ----------------------------VERFKDRILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred ----------------------------HHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 112344556666655444777777777766
No 385
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=31.63 E-value=72 Score=32.82 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=50.3
Q ss_pred HHhhhhhhcccccchHH-hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
+|.++.++.+.+..+-. |.......++.+..+..++...-...-+-.+|.++.++-+..... ..+....+.+|..|+
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~~~h~~LRd~AA 289 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPDDNHWALRDYAA 289 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCCchHHHHHHHHH
Confidence 44444444444433323 556677777888888887644333333446888887774433210 001234569999999
Q ss_pred HHHHHhc
Q 005144 138 FALGLLA 144 (712)
Q Consensus 138 ~~L~~l~ 144 (712)
.+|+.++
T Consensus 290 ~ll~~i~ 296 (343)
T cd08050 290 RLLAQIC 296 (343)
T ss_pred HHHHHHH
Confidence 9999999
No 386
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.29 E-value=8.7e+02 Score=28.04 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCcccc---------------CCCcccHH-HHHHHHHHHHH
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADR---------------NLKPFEHE-VEKGSAFALGL 142 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~---------------~~~~~~~~-v~~~a~~~L~~ 142 (712)
..-.|+..|.+.+..+.+...+...+++..+.+...-++-..+.+ +-+..|.+ =|+.|+..+..
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 566778888888877777666666666665555443222111000 01111223 36667778888
Q ss_pred hcCChhhHH-HHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc----C----ChHHHH
Q 005144 143 LAVKPEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME----G----GIPPLV 213 (712)
Q Consensus 143 l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~----~i~~L~ 213 (712)
|+..-+... .++.. -++.+++-...+.. .+|.-...+...+..++......+.-+... + +...+.
T Consensus 389 L~~~fe~~vt~v~~~-~v~~~l~~y~~nPS-----~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~il 462 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSS-EVQRLLDQYSKNPS-----GNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQIL 462 (960)
T ss_pred HHHHhcchhHHHHHH-HHHHHHHHhccCCC-----ccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhh
Confidence 883323222 22211 22222222211111 123444455555555554322111100000 1 111222
Q ss_pred HhhcC----CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005144 214 ELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (712)
Q Consensus 214 ~lL~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 279 (712)
.-|.+ +.|-++..++..+...= +.-.+..++. .++.++..|..+...+...|+.++-.+..-
T Consensus 463 p~L~s~~vn~~pilka~aIKy~~~FR--~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~v 528 (960)
T KOG1992|consen 463 PDLLSPNVNEFPILKADAIKYIYTFR--NQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLTV 528 (960)
T ss_pred HHhccCccccccchhhcccceeeeec--ccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhcccc
Confidence 33333 22445554444433222 2334444444 589999999999999999999988877554
No 387
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.85 E-value=1.1e+03 Score=29.14 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
.+++|.|-.=|.+.+..+|..|.+.++.+.........=........+..-+.+..+++|..+.....+..-
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 457788888888999999999999999997776644331123445666777788899999888876655443
No 388
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=30.82 E-value=3.8e+02 Score=23.66 Aligned_cols=117 Identities=9% Similarity=0.088 Sum_probs=78.6
Q ss_pred hhHHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhc--CCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHH
Q 005144 281 PNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA--TDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFA 356 (712)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~ 356 (712)
++.-....+.+.+..+++++.. ....++.+....+.-+.. .++...-.+...+.+..++..- .-.+.++...-...
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 3455666778888999999986 456666666665554442 2345555677788888887765 33678888888899
Q ss_pred HHHHHH-------HHHHh--cCChHH---HHHhhccCChhHHHHHHHHHHhcc
Q 005144 357 LGRLAQ-------AGIAH--NGGLVP---LLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 357 L~~l~~-------~~~~~--~~~i~~---L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
|..++. ..+.. .+-.|. -+++..+++..+|..+...+.|+.
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 999997 11111 223444 455557888888888887777654
No 389
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.74 E-value=4.1e+02 Score=29.21 Aligned_cols=135 Identities=12% Similarity=0.012 Sum_probs=86.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchh--hhhhhcCChH
Q 005144 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIVQRGAVR 336 (712)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~l~ 336 (712)
.+-++.+|..+...|+--...-|+ .+....++...-..|.+.+..+|.....++..++..++... ..+. ..+..
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~-eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV-ERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHH
Confidence 445677888888777766554444 33344477777778888889999999999999998765443 1222 34566
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005144 337 PLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 397 (712)
.+++++.....-||..+...+..+......+...+..+..++-+..+.-+......+.++|
T Consensus 361 rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 361 RILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 7777775443348888888887776644444455555666665555553333444444443
No 390
>PLN03205 ATR interacting protein; Provisional
Probab=30.52 E-value=6.3e+02 Score=26.18 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=93.0
Q ss_pred hHHHHHhhccCChhhHHHHHHHHH----HHhcCCcchhhhhhhcCChHHH---HHHh-CCCCHHHHHHHHHHHHHHHH--
Q 005144 293 LQPVIGLLSSCCSESQREAALLLG----QFAATDSDCKVHIVQRGAVRPL---IEML-QSPDVQLREMSAFALGRLAQ-- 362 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~----~l~~~~~~~~~~l~~~~~l~~L---~~ll-~~~~~~v~~~a~~~L~~l~~-- 362 (712)
+..|+++..-++..+...+...|. .++ ++......-.+.+.+..+ .+.. .+....|+-.|+..+.-+..
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~-~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHIC-GDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHh-CCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 455566665555555555555433 333 233322233333333222 2221 23555677777766655554
Q ss_pred ------HHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchh---hhhhhhHHHHH
Q 005144 363 ------AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI---VQATKDCVAKT 432 (712)
Q Consensus 363 ------~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~---~~~~~~~~~~~ 432 (712)
+.+......+.+-++|+. .-..|++.++..|.-|-..+.-...|.....-....+..-+ .....+.+
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f--- 480 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF--- 480 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHH---
Confidence 333444556677778844 45788999988887776555555554421111111000000 00111111
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhh-----hhhHHHHHHHHHHHhcCCCc-ccchhh------ccCchHHHHHHhc
Q 005144 433 LKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLCSPDD-QRTIFI------DGGGLELLLGLLG 494 (712)
Q Consensus 433 l~~l~~~~~~~~~~~Lv~ll~~~-----~~~v~~~a~~~L~~l~~~~~-~~~~l~------~~~~~~~L~~ll~ 494 (712)
+.++.-|-.++..+ +-+++..++..|+.++.+.. +-+++. ..+.+..+.+++-
T Consensus 481 ---------SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvLv 545 (652)
T PLN03205 481 ---------GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLLV 545 (652)
T ss_pred ---------HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHHH
Confidence 22344455555433 45677888888888877654 433333 2333455555553
No 391
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=30.37 E-value=5.8e+02 Score=25.67 Aligned_cols=134 Identities=10% Similarity=0.156 Sum_probs=89.1
Q ss_pred HHHHHhCCChHHHHHHHhcccCCc---------------cccchhHHHHHHHHHHHHHhhcCCcch--------------
Q 005144 150 QQLIVDNGALSHLVNLLKRHMDSN---------------CSRAVNSVIRRAADAITNLAHENSSIK-------------- 200 (712)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~~~---------------~~~~~~~v~~~a~~~L~~l~~~~~~~~-------------- 200 (712)
+..+.+.|.++.|-++.+.-.-.. +..+...+..+-++.+.++|.++....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 456778888998888875422110 012233577888999999997432221
Q ss_pred -------hHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChh--cHHHHHhCCCHHHHHHhhcCC---CHHHH
Q 005144 201 -------TRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRSE---DSAIH 266 (712)
Q Consensus 201 -------~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~l~~L~~ll~~~---~~~v~ 266 (712)
..-...|.+..++..+... +...+..-+.++-....+.+. .+..+.+.|+++.++.-+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1112346677777776543 456677777778777775555 344577899999999866544 45789
Q ss_pred HHHHHHHHHhhcCChhH
Q 005144 267 YEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 267 ~~a~~~L~~L~~~~~~~ 283 (712)
....-.||.|...+...
T Consensus 162 Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 99999999999888663
No 392
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.38 E-value=5.8e+02 Score=26.44 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=56.7
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-chhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 362 (712)
.+..+..-|...++.|...|+..+..++.+.. ..+..+....+...|..++. +..+.|++.....+.+++.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 57778888899999999999998888876543 44556777788889999997 6778888888777777776
No 393
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.03 E-value=2.4e+02 Score=28.81 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcC--CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhH
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~ 150 (712)
++..|+..+..+...+.....+...+ .+.-|++++..+.. ....++..|+.+|..|+ ..+...
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~---------v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK---------VPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHHhccccHH
Confidence 44555555555555667777777776 99999999987664 23489999999999999 444443
No 394
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=9.1e+02 Score=27.15 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCH
Q 005144 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (712)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 347 (712)
.|+--++-++.+ ++....+ .+..+-.++..+++.+|+..=.+++-++..+|. .+++..|-+...+.+.
T Consensus 622 ~avLgiAliAMg-eeig~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNPq-------~~vlDtLsk~shd~D~ 689 (878)
T KOG2005|consen 622 LAVLGIALIAMG-EEIGSEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ-------VNVLDTLSKFSHDGDL 689 (878)
T ss_pred chhhhhhhhhhh-hhhhhHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc-------chHHHHHHHhccCcch
Confidence 455555555554 3332222 466777888888999999999999988876655 3567888888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 005144 348 QLREMSAFALGRLAQ 362 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~ 362 (712)
++..++..+++-+..
T Consensus 690 eva~naIfamGLiGA 704 (878)
T KOG2005|consen 690 EVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHhccccC
Confidence 998888877765443
No 395
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.29 E-value=9.8e+02 Score=27.38 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
+|+.+++.++.++. +.|+.-.. .+..+++-|.+++. .+-..|...|.+|...+|..+..+ +
T Consensus 319 ~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqn--------KiaskAsylL~~L~~~HPnMK~Vv-----i 380 (988)
T KOG2038|consen 319 EVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQN--------KIASKASYLLEGLLAKHPNMKIVV-----I 380 (988)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcch--------hhhhhHHHHHHHHHhhCCcceeeh-----H
Confidence 89999999999988 77765333 45677777777766 788889999999988888776543 3
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhhc
Q 005144 210 PPLVELLEFTD--TKVQRAAAGALRTLAF 236 (712)
Q Consensus 210 ~~L~~lL~~~~--~~v~~~a~~~L~~L~~ 236 (712)
.-+.+++-.++ .....+|+..|..+..
T Consensus 381 ~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 381 DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 45666665544 3444566666665543
No 396
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.41 E-value=70 Score=32.05 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC---------------cccchhhccCchHHHHHHhcC
Q 005144 441 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD---------------DQRTIFIDGGGLELLLGLLGS 495 (712)
Q Consensus 441 ~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~l~~~~~~~~L~~ll~~ 495 (712)
+...+..++.-|.+++...+..|+++|..++.+. .|...+.+.||++.|.+++..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5567888999999999999999999999997654 155667788888888888764
No 397
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.24 E-value=1.5e+03 Score=29.31 Aligned_cols=131 Identities=10% Similarity=0.136 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhhcCC---cchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHH
Q 005144 180 SVIRRAADAITNLAHENS---SIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 255 (712)
++...|+..|..++..-- +....-.+..++.++..++. +.+.+++..++.++.+|...... .+ .. +-+.++
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---nI-kS-GWktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---NV-KS-GWKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---hh-hc-CcHHHH
Confidence 566677777777774221 11112234456777777665 45689999999999998852221 22 23 334444
Q ss_pred Hh----hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cC----ChHHHHHhhccC-ChhhHHHHHHHHHHH
Q 005144 256 LM----LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AG----ALQPVIGLLSSC-CSESQREAALLLGQF 318 (712)
Q Consensus 256 ~l----l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~----~l~~L~~lL~~~-~~~v~~~a~~~L~~l 318 (712)
.+ ..+.++.+...|..++..+... .-..+.. .+ .+..+....... +.++-..|...|+++
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 43 3456778888888887766532 1111110 12 233333333322 355666666666655
No 398
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.19 E-value=1.3e+02 Score=25.96 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHHHhhhhhhcccccchHHh--HHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEAD--RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (712)
.....+.+++.+.+.+...... .+....++.++......-+ ...+.+.+.++.+.+++..+ ++
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~--------------~~ 140 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQSP--------------EL 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC--------------CC
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCH--------------HH
Confidence 4444666777777766543222 6778899999999888322 23456778999999999444 45
Q ss_pred HHHHHHHH
Q 005144 133 EKGSAFAL 140 (712)
Q Consensus 133 ~~~a~~~L 140 (712)
+..|+.+|
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777664
No 399
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=26.12 E-value=7.6e+02 Score=25.69 Aligned_cols=245 Identities=16% Similarity=0.105 Sum_probs=120.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcC
Q 005144 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (712)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 333 (712)
+++..+. .....+-|...+.+....-++.... +++.-++++.+.+..+|++|..-|..+|.++ ... .
T Consensus 30 il~~~k~-~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~ed~d~~ir~qaik~lp~fc~~d--~~~-----r 96 (460)
T KOG2213|consen 30 ILKAVKG-TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLCEDDDVGIRRQAIKGLPLFCKGD--ALS-----R 96 (460)
T ss_pred HHHHhhc-chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccccccchhhHHHHHhccchhccCc--hhh-----h
Confidence 3344433 3344555666777776655554333 4556677888888888888888888888652 111 1
Q ss_pred ChHHHHHHhC------------CCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 334 AVRPLIEMLQ------------SPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 334 ~l~~L~~ll~------------~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
+.+.|.++|. ..+..+|+.+...|..=.. ..-++...+..+-..|.+-..+--......|.
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~ 176 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILA 176 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2233333332 2456666665554433222 22233344444555555555444455556666
Q ss_pred hccc--CcchhHHHHhhCc-cccccccchhhhhhhhHHHHHHHHHHHhh--------hhhhHHHHHHHH-h-hh---hhh
Q 005144 395 GLAD--NEDNVADFIRVGG-VQKLQDGEFIVQATKDCVAKTLKRLEEKI--------HGRVLNHLLYLM-R-VA---EKG 458 (712)
Q Consensus 395 ~l~~--~~~~~~~l~~~~~-i~~L~~~~~~~~~~~~~~~~~l~~l~~~~--------~~~~~~~Lv~ll-~-~~---~~~ 458 (712)
++.. .......+.+.-. ++-+.+...-..++.+++-..+..+.... ++..+..+-+-+ - +- ..+
T Consensus 177 ~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~ 256 (460)
T KOG2213|consen 177 SLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEE 256 (460)
T ss_pred hhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHH
Confidence 6643 1233333333111 11111111112234444444433332211 222221111110 0 11 255
Q ss_pred HHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcC------CCchhhhhhHHHHHhhhcc
Q 005144 459 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS------TNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 459 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~a~~~L~~L~~~ 514 (712)
.+..-+++|+.++..-.... ....+|.++++|.. ..++.++.-+.++.++-++
T Consensus 257 rkL~lLK~lAEMss~ttaq~---a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~ 315 (460)
T KOG2213|consen 257 RKLDLLKALAEMSSYTTAQA---ARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHH 315 (460)
T ss_pred HHHHHHHHHHHhCccchHHH---HHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHH
Confidence 67777888888866553221 23456777777753 4455666677777766554
No 400
>PHA02713 hypothetical protein; Provisional
Probab=25.43 E-value=91 Score=34.65 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.7
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 641 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 641 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
.++.+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 388999999999999999999999999999864
No 401
>PHA03098 kelch-like protein; Provisional
Probab=25.34 E-value=1.5e+02 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999864
No 402
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.28 E-value=2.4e+02 Score=25.28 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=53.2
Q ss_pred hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH-Hhc-CChHHHHH-hhccCC--hhHHHHHHHHHHhcccC
Q 005144 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGI-AHN-GGLVPLLK-LLDSKN--GSLQHNAAFALYGLADN 399 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~-~~~-~~i~~L~~-ll~~~~--~~v~~~a~~~L~~l~~~ 399 (712)
.+++..+.+.+++.+.+.++.+-..++..+..+.. ..+ .+. -.+..++. ++.++. ...|..++.++..++.+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 34556677788888777678888888888888887 111 111 12333444 555443 46888899999999998
Q ss_pred cchhHHHH
Q 005144 400 EDNVADFI 407 (712)
Q Consensus 400 ~~~~~~l~ 407 (712)
+.....+.
T Consensus 148 p~~l~~lf 155 (168)
T PF12783_consen 148 PQFLVDLF 155 (168)
T ss_pred hhHHHHHH
Confidence 87655544
No 403
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=6.2e+02 Score=26.35 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=70.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhh
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (712)
-+.-|+.-+++.+..+|..|+..|-.+..+.+..... --..+++.+..++.+.+..+|.....++-++....-......
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3666788888999999999999998887665543221 223466777777778888888887777777553221111111
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 330 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.-.=+++.+-..+....++++.-+...|.-+..
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 111233445555566777888777776666554
No 404
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.60 E-value=6.8e+02 Score=27.15 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=50.0
Q ss_pred hhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH-------------------HHHHhcCChHHHHHhhcc-CChhH
Q 005144 327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ-------------------AGIAHNGGLVPLLKLLDS-KNGSL 385 (712)
Q Consensus 327 ~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~-------------------~~~~~~~~i~~L~~ll~~-~~~~v 385 (712)
..+.+.++++.|+..|. +.++.++.+|+..|+.+.. ..+.....+..|++.+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 34556899999999995 5678899999999888876 233444455656666532 33666
Q ss_pred HHHHHHHHHhccc
Q 005144 386 QHNAAFALYGLAD 398 (712)
Q Consensus 386 ~~~a~~~L~~l~~ 398 (712)
..+++.++..|-+
T Consensus 136 lvn~v~IlieLIR 148 (475)
T PF04499_consen 136 LVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777754
No 405
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.55 E-value=1.7e+02 Score=30.02 Aligned_cols=90 Identities=9% Similarity=-0.029 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHhh--hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--cccchhhccCchHHHHHHhc-CCCchh
Q 005144 426 KDCVAKTLKRLEEKI--HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLG-STNPKQ 500 (712)
Q Consensus 426 ~~~~~~~l~~l~~~~--~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~~~~~L~~ll~-~~~~~~ 500 (712)
...+.+.|+.+.... ..+++..+.+-|.+.++.|...|+..+..++.+- ..+..+...+....|..++. +.++.|
T Consensus 26 W~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV 105 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKV 105 (462)
T ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHH
Confidence 344555666554433 4567888888899999999999999999885543 35566667777888999998 677788
Q ss_pred hhhhHHHHHhhhccc
Q 005144 501 QLDGAVALFKLANKA 515 (712)
Q Consensus 501 ~~~a~~~L~~L~~~~ 515 (712)
+......+.+.+...
T Consensus 106 ~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 106 CEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888777643
No 406
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=24.34 E-value=5.8e+02 Score=23.72 Aligned_cols=140 Identities=15% Similarity=0.055 Sum_probs=85.0
Q ss_pred HHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
..+..++.++.. +.+..|+.++.... .++. .++.+-..+...+ .+.+...
T Consensus 54 ~l~~~L~~~~~~------------E~~~la~~il~~~~~~~~~~---------~~~~~~~~~~~~~-------~W~~~D~ 105 (213)
T PF08713_consen 54 ELADELWESGYR------------EERYLALLILDKRRKKLTEE---------DLELLEKWLPDID-------NWATCDS 105 (213)
T ss_dssp HHHHHHHCSSCH------------HHHHHHHHHHHHCGGG--HH---------HHHHHHHCCCCCC-------CHHHHHH
T ss_pred HHHHHHcCCchH------------HHHHHHHHHhHHHhhhhhHH---------HHHHHHHHhccCC-------cchhhhH
Confidence 445566766665 78887877775544 1111 2334444444332 2456655
Q ss_pred H-HHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 005144 185 A-ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (712)
Q Consensus 185 a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 263 (712)
. ..++..+.... ....+.+...+.++++-++..++..+...... ... ...+..+...+.+++.
T Consensus 106 ~~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~-----~~~l~~~~~~~~d~~~ 169 (213)
T PF08713_consen 106 LCSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDF-----DELLEIIEALLKDEEY 169 (213)
T ss_dssp HTHHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHH-----HHHHHHHHHCTTGS-H
T ss_pred HHHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCH-----HHHHHHHHHHcCCchH
Confidence 5 33445544322 23556888889999998898887777655532 111 1234555566778899
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 264 AIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.++....|+|..++..+++.....+..
T Consensus 170 ~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 170 YVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999888765555543
No 407
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=23.73 E-value=2.5e+02 Score=33.76 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=64.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHH-HHHHHhcCCcchhhh
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVH 328 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~-~L~~l~~~~~~~~~~ 328 (712)
.++.+..++.+....+|..++++++.++.......... ++..++.++.+.+.-+++.++. .+..+....... ..
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~-l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVG-LV 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccc-cc
Confidence 46777778888899999999999999975432211111 3444555555544444444444 333333211110 00
Q ss_pred hhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
-...=+++.|...+.+....+|..+..++..+..
T Consensus 892 ~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred ccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 1112245677777788888899999888877665
No 408
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.52 E-value=1.6e+02 Score=24.96 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc--ccchh-hccCchHHHHHHhcCCCc--------hhhhhhHHHHHhh
Q 005144 443 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIF-IDGGGLELLLGLLGSTNP--------KQQLDGAVALFKL 511 (712)
Q Consensus 443 ~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l-~~~~~~~~L~~ll~~~~~--------~~~~~a~~~L~~L 511 (712)
.++..|.+-|.+.++.|+..++++|.+++.... .+..+ .....|..+.+.-..++| .||..|-.++.-+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 466778888888899999999999999977654 22222 122234444444442222 3666666655544
Q ss_pred h
Q 005144 512 A 512 (712)
Q Consensus 512 ~ 512 (712)
.
T Consensus 118 f 118 (122)
T cd03572 118 F 118 (122)
T ss_pred h
Confidence 3
No 409
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.05 E-value=1.4e+02 Score=24.99 Aligned_cols=39 Identities=28% Similarity=0.156 Sum_probs=31.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 246 (712)
-+++.|+..|.+++++|...|..+|...+.+. ...+.++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 46789999999999999999999999999633 4444443
No 410
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.04 E-value=4.7e+02 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhC
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 156 (712)
++..|.+-|++.++ .|+..++++|..++ +.+.++..+...
T Consensus 39 i~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 35777888887666 89999999999999 677777776654
No 411
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.71 E-value=7.4e+02 Score=24.35 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
+++.-|.+.|+..++..+ .+..+|+..-. ++..++|.|+..-. ++.+...++..|.+|+..
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~~i---------v~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~P------- 73 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEWNI---------VQKDLIPILISYKD--DDKLFLACLRLLVNLTWP------- 73 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHhch---------hhhhHHHHHHhccC--chHHHHHHHHHHHHhCCC-------
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-----------CCCCHHHHHHHHH
Q 005144 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-----------QSPDVQLREMSAF 355 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-----------~~~~~~v~~~a~~ 355 (712)
+.++ .+...-.......+..+-..-...+..+.+.+++..++..+ ...+..+.+.++.
T Consensus 74 ----------~~~~-~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~ 142 (266)
T PF04821_consen 74 ----------IELL-VESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLT 142 (266)
T ss_pred ----------HHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHH
Q ss_pred HHHHHHH----------------------HHHHhcCChHHHHHhhccC-ChhHHHHHHHHHHhcccCcchhHHH
Q 005144 356 ALGRLAQ----------------------AGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADF 406 (712)
Q Consensus 356 ~L~~l~~----------------------~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~l 406 (712)
.+.|+.. ..+.+.|....|+.+.++. ...-....+.++..+-........+
T Consensus 143 LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p~~L~ 216 (266)
T PF04821_consen 143 LIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDPESLA 216 (266)
T ss_pred HHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCHHHHh
No 412
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=22.12 E-value=1.4e+02 Score=23.75 Aligned_cols=61 Identities=11% Similarity=-0.021 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHh
Q 005144 127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193 (712)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~ 193 (712)
.++..+|+.|+..|+.|+..-.....-+....+..+.+.+.++... ....-.|+..|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~------~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKP------LGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHH
Confidence 3466999999999999992211111112223566777777665442 256666777777763
No 413
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.85 E-value=4.2e+02 Score=28.49 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=79.6
Q ss_pred HHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHH----HHHHHHHhcCC
Q 005144 251 LPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA----ALLLGQFAATD 322 (712)
Q Consensus 251 l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a----~~~L~~l~~~~ 322 (712)
-.-|..+|+.. +++++...+.+|.-|-.. ..+....++..++.++.-++...|.-+ ...|.|+-...
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-----~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~ 92 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRNK-----NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKH 92 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc-----CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhc
Confidence 34456666543 688999988888877432 222334467788888887776666544 33555443222
Q ss_pred cchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHh
Q 005144 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 395 (712)
Q Consensus 323 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 395 (712)
... -.....-..+..+|...++.-...|+.+++.|=. ..+.+...+..+...--++++.|...++..+..
T Consensus 93 kn~---klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~ 163 (616)
T KOG2229|consen 93 KND---KLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLG 163 (616)
T ss_pred ccc---hHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhcc
Confidence 111 1111222456677877777655555555555554 344455566666665567777777776666543
No 414
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=21.78 E-value=4.7e+02 Score=28.43 Aligned_cols=109 Identities=9% Similarity=-0.053 Sum_probs=64.0
Q ss_pred HHHhhhhhhcccccch--HHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWL--EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
.+|.++.++....+.+ ..|-+.....++....|.+++...-.-.-+-.+|.++.++-+...... -.....+.+|.-
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~--p~~dnhwaLRDf 317 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR--PELDNHWALRDF 317 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC--ccccchHHHHHH
Confidence 3455666665555443 356667777888888888876554443345567877777644332100 012234479999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcc
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRH 169 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~ 169 (712)
|+..+..++ +....... ....++..+.+.+.+.
T Consensus 318 AA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 318 AARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 999999888 33332222 3444566666666554
No 415
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.52 E-value=6.6e+02 Score=29.35 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=84.8
Q ss_pred hHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C-----Chh-hHHHHHhCCChHHHHHHHhc
Q 005144 96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-----KPE-HQQLIVDNGALSHLVNLLKR 168 (712)
Q Consensus 96 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-----~~~-~~~~~~~~~~l~~L~~lL~~ 168 (712)
..+.+-+...++.++.++..... ++++..|...|..|. . .|. ..+.+...+.+..|+..+-.
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~-----------~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKD-----------PDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccc-----------cchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 34455567788888888865543 278888888887777 3 333 45555555566665554433
Q ss_pred c-cCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC-ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHH
Q 005144 169 H-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (712)
Q Consensus 169 ~-~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 246 (712)
. ... ......+.++..++. .-+.. .... ....+.+-....++.+...++.++..-.. +....+.
T Consensus 251 ~~~s~-------s~lVs~i~vlI~ll~---~~r~~-~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~ 316 (838)
T KOG2073|consen 251 DGTSL-------SVLVSGIIVLISLLN---PRRDT-VETNSTTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLL 316 (838)
T ss_pred CCcch-------hhHHHHHHHHHHhcC---ccccc-ccccceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhc
Confidence 1 111 222222333322221 11110 0000 00111111122344455555554443221 1111111
Q ss_pred hCCCH---HHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHHhhccC
Q 005144 247 ECNAL---PTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSC 303 (712)
Q Consensus 247 ~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~~ 303 (712)
+...- +.=...+..+=...|...+..+..|... +....+.....+.+..++.++...
T Consensus 317 ~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 317 EPEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred CCccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 11111 1111222222334677777777776553 344556666677777777777654
No 416
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.97 E-value=1.7e+02 Score=23.24 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHh
Q 005144 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (712)
+....|..|+..|..++..-.....-.+..+...+.+.+.++..+. ....-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~----------~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL----------GTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHH
Confidence 4667899999999998873111111123345677888887766532 6788888888777
No 417
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=20.85 E-value=4.4e+02 Score=21.72 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
+..|.+-|.+.+. .++..|+.+|-.+. .++.+...+....++..++++...... .......++.
T Consensus 39 ~~~l~kRl~~~~~------------~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~--~~~~~~~Vr~ 104 (115)
T cd00197 39 VDAIKKRINNKNP------------HVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLL--GDDVSTNVRE 104 (115)
T ss_pred HHHHHHHhcCCcH------------HHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccc--cCCCChHHHH
Confidence 4555666666544 89999999999999 667787777777666655554111111 1111237777
Q ss_pred HHHHHHHHH
Q 005144 184 RAADAITNL 192 (712)
Q Consensus 184 ~a~~~L~~l 192 (712)
.+...+...
T Consensus 105 k~~~l~~~w 113 (115)
T cd00197 105 KAIELVQLW 113 (115)
T ss_pred HHHHHHHHH
Confidence 776666543
No 418
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=2.8e+02 Score=32.25 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=64.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhh---cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLA---FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
.++..-..+|.+++..+|..++.+|.... ...+..--.++ ...-+.++..+...++-+...|+.+|.+++....++
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 34455566778888899998888887432 11111111112 235778888899999999999999999998877666
Q ss_pred HHHHHHcCChHHHHHhhcc
Q 005144 284 KKEVLAAGALQPVIGLLSS 302 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~ 302 (712)
...=.-..++|.+-.++.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544445567777666654
No 419
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.31 E-value=1.3e+03 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=24.6
Q ss_pred cCChhhHHHHHhCCChHHHHHHHhcccC
Q 005144 144 AVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (712)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 171 (712)
|..|.+|..+...|++..+.+.|.+.+.
T Consensus 362 c~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 362 CVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred ccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 3678999999999999999999987764
No 420
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=1.2e+03 Score=25.66 Aligned_cols=230 Identities=17% Similarity=0.103 Sum_probs=108.3
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
..+..+..+|+..+.++. .....++.++..-..-+.-....+... ..+..+...+. +......|..+++.+-
T Consensus 153 ~~L~~l~~lLe~~~l~~~-----~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll 225 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSS-----DDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALL 225 (559)
T ss_pred HHHHHHHHHHhhcCCChh-----hHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHH
Confidence 356667777776655321 455555566554443223333344443 45556666666 3445555555555443
Q ss_pred cC---Chhc----HHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhh---ccC
Q 005144 236 FK---NDEN----KNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLL---SSC 303 (712)
Q Consensus 236 ~~---~~~~----~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL---~~~ 303 (712)
.. ...+ ...+...-.++...++. ...+.+-..+.++++..++.. -......+. +.++.+-.+| ...
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~ea--f~~~i~~np~~~l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEA--FVVLISTNPEEFLRIVELLLLVAGHN 303 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHH--HHHHHhhCCCcchhHHHHHHHhccCC
Confidence 21 1111 11111222333333333 234667777788888888532 111222222 3444332333 344
Q ss_pred ChhhHHHHHHHHHHHhcCC-----cchhhhhhhcCChHHHHHHhC----CC---------C---HHHHHHHHHHHHHHHH
Q 005144 304 CSESQREAALLLGQFAATD-----SDCKVHIVQRGAVRPLIEMLQ----SP---------D---VQLREMSAFALGRLAQ 362 (712)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~-----~~~~~~l~~~~~l~~L~~ll~----~~---------~---~~v~~~a~~~L~~l~~ 362 (712)
+.++.+.......++.... ..... +. ......+++++. -+ . .+.|..+..++..++.
T Consensus 304 ~~evie~SF~fW~~lse~l~~~~~~~~~~-~f-rpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~ 381 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLTDDDEALG-IF-RPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAF 381 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhccccHHHHH-Hh-HHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHH
Confidence 6677777666666665321 11111 11 122334444441 11 1 2345555555555444
Q ss_pred HHHHh-cCChHHHHHhhc--cCChhHHHHHHHHHHhcccC
Q 005144 363 AGIAH-NGGLVPLLKLLD--SKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 363 ~~~~~-~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~ 399 (712)
++. ...+..+..-+. ..+++..+.++..|+.++.+
T Consensus 382 --iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~ 419 (559)
T KOG2081|consen 382 --IIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKN 419 (559)
T ss_pred --HhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhcc
Confidence 111 111222222232 45688999999999998764
No 421
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.24 E-value=1.5e+02 Score=28.10 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHhccCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCCCCCCh--hhHHHHHHHHHHhChHhHHHHHHHHH
Q 005144 569 AFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQDLLRAADQYLLEGLKRLCEYTI 638 (712)
Q Consensus 569 ~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~l~~~A~~~~~~~l~~~c~~~l 638 (712)
...+||++...- ...+...+ +=+-..|+.+++|+-+-...+++ .++..|+.-|++|+++.+..+.....
T Consensus 34 ~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 34 MLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhccc
Confidence 445666652221 11223333 23566899999999996666665 67889999999999998877665443
No 422
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.02 E-value=1.3e+03 Score=26.27 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCC
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 118 (712)
....+..++..|...+ ...+.+-..+-.|+.-+..|..|..+...|++..+++.|.+...
T Consensus 330 ~~dd~~yiLStlq~~~----~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 330 FTDDLEYILSTLQSAL----LPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred hhhhHHHHHhhhhhcc----ccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 4444444444444432 12233333444455555579999999999999999999977654
Done!