Query 005144
Match_columns 712
No_of_seqs 489 out of 4073
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.9E-37 6.6E-42 337.4 32.2 397 59-513 59-478 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.9E-37 6.6E-42 339.5 32.4 397 59-513 78-497 (529)
3 4b8j_A Importin subunit alpha- 100.0 1E-35 3.4E-40 327.5 36.2 400 57-515 74-498 (528)
4 3now_A UNC-45 protein, SD10334 100.0 3.6E-36 1.2E-40 332.6 27.0 397 57-514 290-738 (810)
5 3ul1_B Importin subunit alpha- 100.0 4.5E-35 1.6E-39 318.7 33.7 363 57-472 100-478 (510)
6 1wa5_B Importin alpha subunit; 100.0 1.9E-34 6.4E-39 317.2 38.6 399 58-515 88-512 (530)
7 3tpo_A Importin subunit alpha- 100.0 1.1E-34 3.8E-39 317.7 34.6 362 57-471 119-496 (529)
8 1jdh_A Beta-catenin; beta-cate 100.0 8E-35 2.8E-39 321.0 31.7 427 57-512 59-529 (529)
9 2z6h_A Catenin beta-1, beta-ca 100.0 5.3E-34 1.8E-38 320.5 36.6 432 58-515 15-529 (644)
10 3l6x_A Catenin delta-1; cateni 100.0 2.1E-34 7.2E-39 308.3 30.1 359 102-516 46-479 (584)
11 3now_A UNC-45 protein, SD10334 100.0 1.6E-34 5.3E-39 319.6 29.7 383 76-514 260-695 (810)
12 2z6g_A B-catenin; FULL-length, 100.0 2.6E-34 8.8E-39 327.5 29.9 430 58-516 193-666 (780)
13 3nmz_A APC variant protein; pr 100.0 3.8E-34 1.3E-38 300.2 28.0 360 82-475 48-453 (458)
14 1jdh_A Beta-catenin; beta-cate 100.0 3.9E-33 1.3E-37 307.5 36.4 429 56-514 16-490 (529)
15 3l6x_A Catenin delta-1; cateni 100.0 9.3E-34 3.2E-38 303.3 29.4 370 58-487 49-491 (584)
16 1xm9_A Plakophilin 1; armadill 100.0 1.5E-33 5.2E-38 301.8 29.5 355 105-516 3-452 (457)
17 2jdq_A Importin alpha-1 subuni 100.0 2.7E-33 9.3E-38 302.2 31.4 396 59-514 22-444 (450)
18 3nmz_A APC variant protein; pr 100.0 2.6E-33 9.1E-38 293.8 26.5 362 105-515 33-452 (458)
19 1xm9_A Plakophilin 1; armadill 100.0 1.1E-32 3.8E-37 295.0 28.8 358 59-478 4-455 (457)
20 2z6g_A B-catenin; FULL-length, 100.0 9.1E-32 3.1E-36 306.5 37.0 429 56-514 149-623 (780)
21 4b8j_A Importin subunit alpha- 100.0 2.6E-31 9.1E-36 292.2 37.0 371 59-475 119-499 (528)
22 1wa5_B Importin alpha subunit; 100.0 7.5E-31 2.6E-35 288.5 37.2 371 63-475 132-513 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 1E-30 3.4E-35 282.0 35.6 372 57-474 64-445 (450)
24 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-30 3.8E-35 293.5 26.0 390 100-510 10-420 (644)
25 3nmw_A APC variant protein; AR 100.0 7E-30 2.4E-34 260.4 24.4 278 124-402 41-338 (354)
26 3nmw_A APC variant protein; AR 100.0 8.7E-30 3E-34 259.6 22.1 276 78-362 47-334 (354)
27 3hve_A Gigaxonin; ubiquitin, c 99.9 1.4E-27 4.7E-32 234.5 15.7 161 536-696 23-185 (256)
28 3htm_A Speckle-type POZ protei 99.9 2.2E-27 7.5E-32 218.4 14.0 147 536-682 26-172 (172)
29 4hxt_A De novo protein OR329; 99.9 1.9E-25 6.4E-30 220.4 24.7 239 104-362 2-241 (252)
30 3i3n_A Kelch-like protein 11; 99.9 3.6E-27 1.2E-31 234.5 12.4 160 536-695 24-192 (279)
31 4hxt_A De novo protein OR329; 99.9 1.8E-24 6.3E-29 213.3 25.8 240 58-323 3-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 8.7E-25 3E-29 215.6 21.7 238 104-361 12-250 (252)
33 4db8_A Armadillo-repeat protei 99.9 4.5E-24 1.5E-28 210.5 23.2 234 157-398 12-251 (252)
34 3hqi_A Speckle-type POZ protei 99.9 2.2E-24 7.4E-29 218.6 15.4 147 536-682 166-312 (312)
35 3opb_A SWI5-dependent HO expre 99.9 6.9E-22 2.4E-26 214.0 29.9 409 80-514 229-729 (778)
36 4eoz_A Speckle-type POZ protei 99.9 1.4E-24 4.9E-29 193.4 5.4 129 536-664 17-145 (145)
37 4db6_A Armadillo repeat protei 99.9 1E-21 3.5E-26 187.6 21.8 200 101-320 9-209 (210)
38 3opb_A SWI5-dependent HO expre 99.9 1.7E-21 5.8E-26 211.0 25.6 379 60-498 295-761 (778)
39 4db6_A Armadillo repeat protei 99.9 1E-21 3.5E-26 187.6 21.0 199 155-361 10-208 (210)
40 1xqr_A HSPBP1 protein; armadil 99.9 4.8E-21 1.6E-25 189.8 23.6 211 55-284 26-244 (296)
41 2vkp_A BTB/POZ domain-containi 99.9 5.6E-22 1.9E-26 166.6 9.9 104 538-642 2-109 (109)
42 2if5_A Zinc finger and BTB dom 99.9 1.8E-21 6.1E-26 166.5 10.6 103 536-638 17-119 (120)
43 1xqr_A HSPBP1 protein; armadil 99.8 3.9E-20 1.3E-24 183.2 20.3 186 131-324 55-242 (296)
44 1r29_A B-cell lymphoma 6 prote 99.8 5.1E-21 1.7E-25 165.4 11.1 104 536-640 21-125 (127)
45 2z8h_A Transcription regulator 99.8 4.6E-21 1.6E-25 167.9 8.1 109 536-646 28-137 (138)
46 2ppi_A Gigaxonin; BTB domain, 99.8 6.4E-21 2.2E-25 167.8 8.1 103 536-638 39-143 (144)
47 3tt9_A Plakophilin-2; cell adh 99.8 1.4E-19 4.8E-24 170.9 17.2 196 105-320 9-229 (233)
48 3b84_A Zinc finger and BTB dom 99.8 7E-21 2.4E-25 162.0 7.5 101 536-640 16-116 (119)
49 1buo_A POZ domain, protein (pr 99.8 3E-20 1E-24 158.7 10.7 102 536-642 20-121 (121)
50 2yy9_A Zinc finger and BTB dom 99.8 1.2E-20 4E-25 164.4 7.3 105 536-644 17-121 (135)
51 2vpk_A Myoneurin; transcriptio 99.8 3.8E-20 1.3E-24 157.0 9.8 100 536-639 14-115 (116)
52 3tt9_A Plakophilin-2; cell adh 99.8 2.9E-19 9.8E-24 168.8 16.5 191 207-399 8-230 (233)
53 2q81_A MIZ-1 protein; BTB/POZ 99.8 6.8E-20 2.3E-24 155.9 7.5 99 536-639 19-117 (119)
54 3ohu_A Transcription regulator 99.8 1.6E-20 5.4E-25 161.8 2.6 100 536-637 24-124 (125)
55 2ihc_A Transcription regulator 99.8 2.5E-20 8.4E-25 159.9 2.3 102 536-639 21-123 (124)
56 3ga1_A Nucleus accumbens-assoc 99.8 6.1E-20 2.1E-24 158.8 4.6 102 536-641 25-127 (129)
57 3m5b_A Zinc finger and BTB dom 99.8 2.7E-19 9.1E-24 151.2 6.5 94 538-640 24-117 (119)
58 3fkc_A Transcriptional regulat 99.7 2.7E-18 9.2E-23 144.9 9.2 92 536-632 23-115 (116)
59 1b3u_A Protein (protein phosph 99.7 1.5E-16 5.3E-21 177.2 25.3 400 75-513 176-587 (588)
60 1b3u_A Protein (protein phosph 99.7 5.2E-16 1.8E-20 172.9 22.8 374 105-514 165-549 (588)
61 3grl_A General vesicular trans 99.7 7.4E-15 2.5E-19 155.0 29.3 331 52-408 16-405 (651)
62 4fdd_A Transportin-1; heat rep 99.7 1.8E-15 6.3E-20 175.8 20.1 376 75-515 60-473 (852)
63 3grl_A General vesicular trans 99.6 6.8E-14 2.3E-18 147.7 28.3 367 105-515 22-451 (651)
64 4fdd_A Transportin-1; heat rep 99.6 1.9E-14 6.6E-19 167.2 24.7 425 61-515 174-660 (852)
65 1ibr_B P95, importin beta-1 su 99.6 5.9E-13 2E-17 143.3 27.4 375 76-516 14-440 (462)
66 1oyz_A Hypothetical protein YI 99.6 4.2E-13 1.4E-17 133.8 22.9 253 59-395 25-279 (280)
67 2vgl_B AP-2 complex subunit be 99.5 5.8E-13 2E-17 147.2 24.6 388 76-515 62-459 (591)
68 1oyz_A Hypothetical protein YI 99.5 7.8E-13 2.7E-17 131.9 23.3 229 205-513 21-250 (280)
69 2vgl_B AP-2 complex subunit be 99.5 2.3E-13 7.9E-18 150.4 21.0 396 63-515 88-495 (591)
70 2bpt_A Importin beta-1 subunit 99.5 5.8E-13 2E-17 155.4 19.2 424 59-513 367-857 (861)
71 1qgr_A Protein (importin beta 99.5 2.4E-12 8.4E-17 150.4 24.4 429 60-515 171-681 (876)
72 1w63_A Adapter-related protein 99.5 4.4E-11 1.5E-15 132.6 31.5 347 76-514 83-452 (618)
73 2bpt_A Importin beta-1 subunit 99.5 4.5E-12 1.5E-16 147.9 24.9 413 76-515 194-670 (861)
74 1w63_A Adapter-related protein 99.4 1.1E-11 3.9E-16 137.3 23.4 384 76-515 120-542 (618)
75 3ltm_A Alpha-REP4; protein eng 99.4 7.1E-12 2.4E-16 119.0 16.8 189 248-516 18-206 (211)
76 2ast_A S-phase kinase-associat 99.4 1.4E-12 4.7E-17 115.9 10.7 114 547-661 3-148 (159)
77 1qgr_A Protein (importin beta 99.4 2.3E-11 7.9E-16 142.1 24.4 395 58-515 36-481 (876)
78 3ltm_A Alpha-REP4; protein eng 99.4 1.4E-11 4.9E-16 116.9 18.4 189 206-475 18-206 (211)
79 1ibr_B P95, importin beta-1 su 99.4 9.8E-12 3.4E-16 133.7 18.1 354 59-474 37-439 (462)
80 3ltj_A Alpharep-4; protein eng 99.4 3.8E-11 1.3E-15 113.0 19.4 184 207-471 14-197 (201)
81 3ltj_A Alpharep-4; protein eng 99.3 5.3E-11 1.8E-15 112.0 17.1 184 157-397 14-197 (201)
82 4gmo_A Putative uncharacterize 99.3 4.9E-10 1.7E-14 125.4 24.2 199 59-276 36-256 (684)
83 1u6g_C TIP120 protein, CAND1; 99.2 8.1E-10 2.8E-14 133.6 26.9 424 57-516 48-601 (1230)
84 1u6g_C TIP120 protein, CAND1; 99.2 1.1E-09 3.7E-14 132.5 27.4 417 59-513 8-506 (1230)
85 4ajy_C Transcription elongatio 99.2 8E-11 2.7E-15 94.6 8.5 79 547-626 4-96 (97)
86 2vgl_A Adaptor protein complex 99.1 3.1E-08 1.1E-12 109.3 27.7 353 76-514 87-471 (621)
87 2vgl_A Adaptor protein complex 99.1 2E-08 6.8E-13 110.8 25.8 332 104-515 74-435 (621)
88 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 6.1E-10 2.1E-14 96.3 8.8 95 547-646 4-125 (141)
89 4gmo_A Putative uncharacterize 99.0 4.1E-09 1.4E-13 117.9 15.7 218 106-343 36-286 (684)
90 2p1m_A SKP1-like protein 1A; F 99.0 2.3E-10 7.7E-15 101.4 3.3 109 547-659 6-145 (160)
91 4ady_A RPN2, 26S proteasome re 98.7 3.5E-06 1.2E-10 94.0 26.7 306 129-514 408-720 (963)
92 3tjz_B Coatomer subunit gamma; 98.7 6.3E-07 2.1E-11 89.8 18.4 275 160-510 71-350 (355)
93 2db0_A 253AA long hypothetical 98.7 2.6E-06 8.9E-11 73.6 18.5 183 205-402 30-214 (253)
94 2db0_A 253AA long hypothetical 98.6 4.5E-06 1.5E-10 72.1 18.6 214 247-513 30-246 (253)
95 2qk2_A LP04448P; mini spindles 98.6 3.5E-07 1.2E-11 88.3 12.9 184 292-515 16-207 (242)
96 3tjz_B Coatomer subunit gamma; 98.6 7E-07 2.4E-11 89.5 15.2 244 106-399 70-317 (355)
97 1ho8_A Vacuolar ATP synthase s 98.6 1.1E-05 3.9E-10 82.4 23.3 340 157-515 77-478 (480)
98 3b2a_A TON_1937, putative unch 98.5 4E-06 1.4E-10 75.9 17.2 185 158-362 34-218 (265)
99 3b2a_A TON_1937, putative unch 98.5 1.3E-06 4.6E-11 79.0 13.5 224 249-510 33-258 (265)
100 1hv2_A Elongin C, ELC1; protei 98.5 2E-07 6.8E-12 74.6 7.3 79 547-627 6-99 (99)
101 2qk2_A LP04448P; mini spindles 98.5 1.4E-06 4.9E-11 84.0 13.8 174 179-362 29-205 (242)
102 2fnj_C Transcription elongatio 98.5 1.8E-07 6.2E-12 74.4 5.8 80 547-627 3-96 (96)
103 4ady_A RPN2, 26S proteasome re 98.5 5.6E-06 1.9E-10 92.3 19.6 290 131-515 373-678 (963)
104 3v7d_A Suppressor of kinetocho 98.4 1.1E-06 3.8E-11 78.1 10.4 111 546-657 8-151 (169)
105 2eqx_A Kelch repeat and BTB do 98.4 2.7E-07 9.3E-12 75.3 4.8 58 639-696 5-62 (105)
106 1te4_A Conserved protein MTH18 98.4 6.4E-08 2.2E-12 83.4 0.9 120 206-359 11-130 (131)
107 2qk1_A Protein STU2; STU2P, XM 98.3 5.6E-06 1.9E-10 79.7 12.3 189 295-515 20-222 (249)
108 1ho8_A Vacuolar ATP synthase s 98.3 0.00026 8.9E-09 72.5 24.8 315 102-471 75-475 (480)
109 1te4_A Conserved protein MTH18 98.2 8.4E-08 2.9E-12 82.7 -1.4 121 248-396 11-131 (131)
110 2qk1_A Protein STU2; STU2P, XM 98.2 1.7E-05 5.8E-10 76.4 13.0 183 179-362 30-220 (249)
111 1vcb_B Protein (elongin C); tu 98.1 5.8E-06 2E-10 67.5 6.6 80 547-627 19-112 (112)
112 3drz_A BTB/POZ domain-containi 98.1 1.7E-05 5.7E-10 64.6 9.2 94 546-640 7-106 (107)
113 1wa5_C Importin alpha RE-expor 98.1 0.00016 5.6E-09 84.6 21.2 378 75-514 49-526 (960)
114 1wa5_C Importin alpha RE-expor 97.9 0.0009 3.1E-08 78.3 23.2 442 60-515 122-672 (960)
115 3dad_A FH1/FH2 domain-containi 97.8 0.00088 3E-08 65.1 17.2 152 211-362 122-286 (339)
116 3dad_A FH1/FH2 domain-containi 97.8 0.00083 2.8E-08 65.3 16.6 183 161-352 122-326 (339)
117 2iw3_A Elongation factor 3A; a 97.7 0.0023 7.9E-08 72.5 21.5 285 183-514 32-325 (986)
118 2iw3_A Elongation factor 3A; a 97.7 0.0038 1.3E-07 70.9 22.7 246 81-362 70-324 (986)
119 4hat_C Exportin-1; heat repeat 97.3 0.012 4.1E-07 68.3 21.1 313 56-399 189-570 (1023)
120 2x19_B Importin-13; nuclear tr 97.3 0.017 5.9E-07 67.6 22.6 133 301-473 459-600 (963)
121 2x1g_F Cadmus; transport prote 97.2 0.043 1.5E-06 64.2 25.3 235 130-378 478-739 (971)
122 2of3_A ZYG-9; multifunctional 97.0 0.0087 3E-07 56.9 13.5 176 210-398 49-236 (266)
123 2x1g_F Cadmus; transport prote 97.0 0.028 9.4E-07 65.9 20.8 410 77-514 99-616 (971)
124 2x19_B Importin-13; nuclear tr 97.0 0.12 3.9E-06 60.5 26.1 334 129-514 462-847 (963)
125 4ffb_C Protein STU2; tubulin f 97.0 0.013 4.6E-07 57.1 15.1 184 209-399 12-213 (278)
126 1lrv_A LRV, leucine-rich repea 97.0 0.001 3.4E-08 63.0 6.4 116 211-393 126-241 (244)
127 3drx_A BTB/POZ domain-containi 96.9 0.0015 5.2E-08 58.6 6.4 96 544-640 11-112 (202)
128 1lrv_A LRV, leucine-rich repea 96.9 0.0014 4.7E-08 62.1 6.4 188 55-357 47-241 (244)
129 3ibv_A Exportin-T; karyopherin 96.8 0.016 5.6E-07 67.1 16.5 316 59-398 191-566 (980)
130 3ibv_A Exportin-T; karyopherin 96.8 0.87 3E-05 52.7 30.1 408 76-516 56-569 (980)
131 4ffb_C Protein STU2; tubulin f 96.7 0.0099 3.4E-07 58.1 11.9 184 293-515 12-214 (278)
132 1upk_A MO25 protein; transfera 96.7 0.037 1.3E-06 53.7 15.2 202 203-406 74-291 (341)
133 3oc3_A Helicase MOT1, MOT1; re 96.7 0.0059 2E-07 62.9 9.6 239 208-509 175-432 (800)
134 3m1i_C Exportin-1; heat repeat 96.6 0.094 3.2E-06 61.8 21.4 327 131-513 210-618 (1049)
135 3m1i_C Exportin-1; heat repeat 96.5 0.095 3.3E-06 61.8 20.1 312 59-399 192-570 (1049)
136 2of3_A ZYG-9; multifunctional 96.5 0.038 1.3E-06 52.5 13.3 173 295-515 50-238 (266)
137 1upk_A MO25 protein; transfera 96.5 0.2 6.8E-06 48.7 18.3 237 244-512 73-331 (341)
138 3oc3_A Helicase MOT1, MOT1; re 96.2 0.023 7.9E-07 58.6 10.5 238 129-394 187-432 (800)
139 4hat_C Exportin-1; heat repeat 96.1 0.61 2.1E-05 54.2 23.1 145 129-281 466-621 (1023)
140 3l9t_A Putative uncharacterize 96.0 0.029 9.8E-07 51.6 9.2 141 250-408 72-218 (240)
141 2fv2_A RCD1 required for cell 95.9 0.25 8.5E-06 45.8 15.2 153 266-420 73-245 (268)
142 2fv2_A RCD1 required for cell 95.9 0.69 2.4E-05 42.9 17.8 178 79-276 72-266 (268)
143 3l9t_A Putative uncharacterize 95.9 0.18 6.1E-06 46.4 13.8 145 106-289 73-218 (240)
144 3ebb_A Phospholipase A2-activa 95.6 1.3 4.3E-05 43.2 19.8 192 106-315 105-300 (304)
145 3gjx_A Exportin-1; transport, 94.8 2.3 7.8E-05 49.4 21.9 315 59-398 204-595 (1073)
146 3c2g_A SYS-1 protein; beta-cat 94.3 0.55 1.9E-05 45.3 12.4 134 226-362 262-403 (619)
147 1lsh_A Lipovitellin (LV-1N, LV 94.3 1.4 4.8E-05 51.4 18.9 123 211-362 444-576 (1056)
148 1s1g_A Potassium voltage-gated 93.9 0.092 3.2E-06 43.4 5.7 91 544-638 12-109 (124)
149 3kvt_A Potassium channel prote 93.2 0.027 9.1E-07 46.0 1.3 95 546-641 6-105 (115)
150 3ebb_A Phospholipase A2-activa 92.8 1.7 5.9E-05 42.3 13.7 168 79-260 118-287 (304)
151 3c2g_A SYS-1 protein; beta-cat 92.5 0.97 3.3E-05 43.6 11.0 137 79-235 259-402 (619)
152 3u0r_A Apoptosis inhibitor 5; 92.5 0.89 3E-05 46.4 11.4 127 254-395 34-160 (507)
153 2f31_A Diaphanous protein homo 92.2 6.1 0.00021 36.7 16.4 164 145-310 32-218 (233)
154 1lsh_A Lipovitellin (LV-1N, LV 91.9 9.2 0.00032 44.6 20.9 168 209-400 393-578 (1056)
155 2nz0_B Potassium voltage-gated 91.9 0.12 4.2E-06 43.6 3.8 84 543-630 33-121 (140)
156 1nn7_A Potassium channel KV4.2 91.4 0.087 3E-06 42.2 2.2 80 547-630 2-86 (105)
157 3u0r_A Apoptosis inhibitor 5; 90.4 1.8 6E-05 44.3 11.0 118 131-276 43-161 (507)
158 3eg5_B Protein diaphanous homo 89.7 8.6 0.00029 38.8 15.8 175 83-267 87-283 (383)
159 2f31_A Diaphanous protein homo 89.6 6.3 0.00022 36.6 13.8 166 93-268 33-218 (233)
160 3eg5_B Protein diaphanous homo 88.8 6.3 0.00022 39.8 14.0 164 145-310 98-284 (383)
161 1t1d_A Protein (potassium chan 88.2 0.22 7.6E-06 39.3 2.2 84 547-631 3-90 (100)
162 3a6p_A Exportin-5; exportin-5, 87.3 16 0.00055 43.3 18.4 287 76-396 26-378 (1204)
163 2bnx_A Diaphanous protein homo 86.6 8.7 0.0003 38.8 13.5 161 148-310 39-222 (386)
164 2bnx_A Diaphanous protein homo 84.9 26 0.00088 35.3 16.0 166 93-268 37-222 (386)
165 3qml_C Protein SLS1, nucleotid 84.7 27 0.00091 33.4 14.6 161 58-235 23-188 (315)
166 3a6p_A Exportin-5; exportin-5, 80.1 35 0.0012 40.4 17.1 221 262-515 26-278 (1204)
167 3gjx_A Exportin-1; transport, 78.9 1E+02 0.0035 35.7 26.8 137 220-362 492-644 (1073)
168 3o2t_A Symplekin; heat repeat, 77.5 25 0.00085 35.2 12.4 102 290-396 62-181 (386)
169 3qml_C Protein SLS1, nucleotid 76.8 23 0.00077 33.9 11.2 134 221-361 42-188 (315)
170 3s4w_B Protein FACD2, fanconi 76.7 1.3E+02 0.0043 35.6 20.9 129 262-398 323-467 (1323)
171 2vkp_A BTB/POZ domain-containi 76.6 3 0.0001 33.2 4.7 32 642-673 77-108 (109)
172 3gs3_A Symplekin, LD45768P; he 69.2 75 0.0026 29.7 18.6 148 55-235 10-172 (257)
173 2eqx_A Kelch repeat and BTB do 65.7 7.7 0.00026 30.7 4.7 67 606-673 4-82 (105)
174 3gs3_A Symplekin, LD45768P; he 63.6 97 0.0033 29.0 16.9 123 264-396 30-171 (257)
175 2yy9_A Zinc finger and BTB dom 63.4 6.7 0.00023 32.7 4.1 36 642-677 87-122 (135)
176 1r29_A B-cell lymphoma 6 prote 61.1 15 0.0005 30.1 5.9 32 642-673 95-126 (127)
177 2vpk_A Myoneurin; transcriptio 57.4 18 0.00062 28.9 5.7 30 642-671 86-115 (116)
178 3b84_A Zinc finger and BTB dom 57.4 13 0.00044 30.1 4.7 32 642-673 86-117 (119)
179 1buo_A POZ domain, protein (pr 57.4 28 0.00096 28.0 6.9 31 642-672 89-119 (121)
180 2q81_A MIZ-1 protein; BTB/POZ 56.4 24 0.00082 28.4 6.3 30 642-671 88-117 (119)
181 1x5b_A Signal transducing adap 55.1 60 0.002 27.9 8.8 70 208-277 53-124 (163)
182 3o2t_A Symplekin; heat repeat, 52.3 1.9E+02 0.0065 28.8 17.4 66 206-276 62-127 (386)
183 2if5_A Zinc finger and BTB dom 51.4 36 0.0012 27.3 6.6 29 642-670 91-119 (120)
184 1vsy_5 Proteasome activator BL 47.0 21 0.00073 41.0 5.9 222 106-362 135-365 (997)
185 2z8h_A Transcription regulator 46.9 4.8 0.00017 33.7 0.5 33 642-674 101-133 (138)
186 1vsy_5 Proteasome activator BL 46.2 61 0.0021 37.3 9.5 214 292-514 134-366 (997)
187 1mhq_A ADP-ribosylation factor 45.9 32 0.0011 29.1 5.5 70 208-277 39-115 (148)
188 3ldz_A STAM-1, signal transduc 45.8 26 0.0009 29.3 4.9 70 208-277 43-113 (140)
189 2b6c_A Hypothetical protein EF 44.9 1.8E+02 0.0061 26.3 13.3 140 107-289 58-199 (220)
190 1x5b_A Signal transducing adap 44.8 57 0.002 28.0 7.0 71 292-362 53-125 (163)
191 3ldz_A STAM-1, signal transduc 44.5 71 0.0024 26.6 7.4 71 292-362 43-114 (140)
192 3gae_A Protein DOA1; UFD3, CDC 43.1 61 0.0021 30.3 7.5 104 218-325 101-222 (253)
193 3htm_A Speckle-type POZ protei 42.8 21 0.00072 30.9 4.1 33 610-642 132-164 (172)
194 3g2s_A C-terminal fragment of 42.6 1.5E+02 0.0052 24.9 9.5 71 292-362 49-126 (149)
195 1mhq_A ADP-ribosylation factor 41.9 89 0.003 26.3 7.6 71 292-362 39-116 (148)
196 3zyq_A Hepatocyte growth facto 41.8 1.2E+02 0.0041 27.7 9.1 70 208-277 46-117 (226)
197 1juq_A ADP-ribosylation factor 41.4 56 0.0019 28.4 6.5 70 208-277 51-127 (171)
198 3s4w_B Protein FACD2, fanconi 41.2 5.1E+02 0.017 30.6 18.4 86 304-397 323-428 (1323)
199 2ast_A S-phase kinase-associat 40.6 54 0.0019 28.0 6.3 64 610-675 49-127 (159)
200 3g2s_A C-terminal fragment of 39.7 69 0.0024 27.0 6.6 71 208-278 49-126 (149)
201 1juq_A ADP-ribosylation factor 38.6 81 0.0028 27.3 7.1 71 292-362 51-128 (171)
202 2ppi_A Gigaxonin; BTB domain, 37.6 17 0.00057 30.6 2.4 29 642-670 115-143 (144)
203 1fs1_B SKP1, cyclin A/CDK2-ass 37.1 1.2E+02 0.0041 25.1 7.7 81 593-675 24-122 (141)
204 4eoz_A Speckle-type POZ protei 36.6 17 0.00059 30.4 2.4 33 642-674 91-123 (145)
205 3jxy_A Alkylpurine DNA glycosy 34.1 2.7E+02 0.0092 25.3 12.0 129 131-290 76-207 (232)
206 3m5b_A Zinc finger and BTB dom 33.1 31 0.0011 27.8 3.3 31 642-672 87-117 (119)
207 3gae_A Protein DOA1; UFD3, CDC 32.1 44 0.0015 31.3 4.6 105 131-238 105-219 (253)
208 3hve_A Gigaxonin; ubiquitin, c 30.6 1.4E+02 0.0047 27.7 8.0 32 642-673 99-130 (256)
209 3pst_A Protein DOA1; protein d 30.3 1.4E+02 0.0047 30.2 8.0 98 301-399 272-390 (425)
210 2r9r_B Paddle chimera voltage 30.0 39 0.0013 35.5 4.3 86 545-631 52-141 (514)
211 3ga1_A Nucleus accumbens-assoc 29.7 19 0.00065 29.5 1.5 32 642-673 96-127 (129)
212 3zyq_A Hepatocyte growth facto 26.9 1.6E+02 0.0055 26.8 7.3 70 106-194 47-118 (226)
213 2plx_B Peptide inhibitor; heli 26.5 61 0.0021 17.0 2.4 22 649-670 3-24 (26)
214 3pst_A Protein DOA1; protein d 25.7 1.3E+02 0.0045 30.4 6.9 128 224-362 243-389 (425)
215 3hqi_A Speckle-type POZ protei 25.5 53 0.0018 31.8 4.1 33 610-642 272-304 (312)
216 3l3f_X Protein DOA1, DOA1/UFD3 25.3 80 0.0027 31.2 5.2 103 131-236 214-326 (362)
217 3l3f_X Protein DOA1, DOA1/UFD3 24.3 1.8E+02 0.0062 28.7 7.5 96 302-398 210-326 (362)
218 4atg_A TAF6; transcription, TF 22.8 34 0.0012 30.4 1.8 110 60-194 43-162 (196)
219 1dvp_A HRS, hepatocyte growth 22.3 1.3E+02 0.0045 27.2 5.8 64 334-397 43-114 (220)
220 3i3n_A Kelch-like protein 11; 22.2 1.2E+02 0.004 28.7 5.7 32 642-673 107-138 (279)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.9e-37 Score=337.43 Aligned_cols=397 Identities=19% Similarity=0.287 Sum_probs=346.7
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
++.+|+.+.+. |++.+..|+..++.+.+. ....+.+++.|+||.|+++|+..+. ++++..|
T Consensus 59 i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~A 121 (510)
T 3ul1_B 59 VEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFES 121 (510)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHHH
Confidence 56777777665 888999999999987652 3456789999999999999986554 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
+|+|+||+ ++++.+..+++.|+++.|+.+|.+++. ++++.|+|+|+|++.+++..+..+...|+++.|+.+
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 99999999 899999999999999999999988766 999999999999999888999999999999999999
Q ss_pred hcCCC-----HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 216 LEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 216 L~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
+.+++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++++|++|+..+++....+...
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 98765 3577899999999997554444444446789999999999999999999999999999888888888999
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HH
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AG 364 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~ 364 (712)
|+++.|+.+|.+.+..++..++++|+|++.+++.....+++.|+++.|+.+++++++.+++.++|+|+|++. ..
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999999999999999888888899999999999999999999999999999999987 67
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhccc--CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhh
Q 005144 365 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 442 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (712)
+.+.|+++.|+.++.+.+..++..|+++|.|++. +.+....+++.|
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g-------------------------------- 401 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG-------------------------------- 401 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT--------------------------------
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC--------------------------------
Confidence 7889999999999999999999999999999976 345555566665
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-------cccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 443 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 443 ~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
+++.|+.+|.+.++.++..++.+|.++.... ..+..+.+.||+..|..|..++|.++...|...|-+...
T Consensus 402 -~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 402 -IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp -CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 4566889999999999999999999985321 134567889999999999999999999999998876654
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-37 Score=339.53 Aligned_cols=397 Identities=19% Similarity=0.284 Sum_probs=345.8
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc--ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
++.+++.+.+. |++.+..|+..++.+.+ .......+++.|++|.|+++|...+. ++++..|
T Consensus 78 l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~~A 140 (529)
T 3tpo_A 78 VEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFES 140 (529)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHHHH
Confidence 55666666554 77889999999998765 24557788999999999999976554 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
+|+|+||+ ++++.+..+++.|+++.|+.+|.+++. ++++.|+|+|+|++.+++.++..+...|+++.|+.+
T Consensus 141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 99999999 888899999999999999999998876 999999999999999889999999999999999999
Q ss_pred hcCCC-----HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 216 LEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 216 L~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
+..++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++|+|++++..+++....+...
T Consensus 213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~ 292 (529)
T 3tpo_A 213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 292 (529)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence 98654 3578899999999997555554444456789999999999999999999999999999888888888999
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HH
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AG 364 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~ 364 (712)
|+++.|+.+|.+.+..++..++.+|+|++.+++.....+++.|+++.|+.++.++++.+++.|+|+|+|++. ..
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999999998888888899999999999999999999999999999999997 66
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhccc--CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhh
Q 005144 365 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 442 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (712)
+.+.|+++.|+.++.+.+..++..|+++|+|++. +++....+++.|
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g-------------------------------- 420 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG-------------------------------- 420 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT--------------------------------
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc--------------------------------
Confidence 7889999999999999999999999999999975 345555666666
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-------cccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 443 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 443 ~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
+++.|+.+|.+.++.++..++.+|.++.... ..+..+.+.||+..|..|..++|.++...|...|.+.-.
T Consensus 421 -~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 421 -IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp -CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred -CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 4556889999999999999999999985311 134567889999999999999999999999888876543
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1e-35 Score=327.46 Aligned_cols=400 Identities=19% Similarity=0.262 Sum_probs=350.3
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-h-hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
..++.+++.|.+. +++.+..|++.|++++.. + .....+++.|++|.|+++|.+++. +.++.
T Consensus 74 ~~l~~lv~~L~s~------~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~ 136 (528)
T 4b8j_A 74 ESLPAMIGGVYSD------DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQF 136 (528)
T ss_dssp -CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHH
Confidence 3467777777654 677899999999999763 3 677888999999999999988752 28999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.|+|+|++|+ ++++.+..+.+.|+++.|+.+|.+.+. +++..++|+|.+++.+.+..+..+...|+++.|+
T Consensus 137 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll 208 (528)
T 4b8j_A 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 208 (528)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHH
Confidence 9999999999 679999999999999999999988655 9999999999999987788888899999999999
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 214 ELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 214 ~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
.++ .+.++.++..++++|.+|+.+.+.. ......++++.|+.++.++++.++..++++|++++...+...+.+++.|+
T Consensus 209 ~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~ 287 (528)
T 4b8j_A 209 AQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (528)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH
Confidence 999 6778999999999999999754333 33445789999999999999999999999999999888777788899999
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHHH------HHH
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ------AGI 365 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~------~~~ 365 (712)
++.|+.+|.++++.++..++++|+|++.+++.....+++.|+++.|+.+|.+. ++.++..|+++|+|++. ..+
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999988888888899999999999999888 99999999999999996 567
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccC--cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
.+.++++.|+.++.+.++.++..|+++|.|++.. ++....+.+.|
T Consensus 368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~--------------------------------- 414 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEG--------------------------------- 414 (528)
T ss_dssp HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---------------------------------
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---------------------------------
Confidence 7889999999999999999999999999999764 45555555544
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc------------ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhh
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 511 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L 511 (712)
+++.|+.++.+.++.++..++.+|.++....+ ....+.+.||+..|..+..+++++++..|...+.++
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56678899999999999999999999975332 466778899999999999999999999999999988
Q ss_pred hccc
Q 005144 512 ANKA 515 (712)
Q Consensus 512 ~~~~ 515 (712)
....
T Consensus 495 ~~~e 498 (528)
T 4b8j_A 495 WMDE 498 (528)
T ss_dssp CC--
T ss_pred CCCc
Confidence 7654
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-36 Score=332.62 Aligned_cols=397 Identities=17% Similarity=0.180 Sum_probs=328.9
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
..++.+++.+.+. +..++..|+++|.+.+.++..|..+++.|+ |.|..++++.+. .++..|
T Consensus 290 G~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~------------~vr~~A 350 (810)
T 3now_A 290 GILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND------------GIRVRA 350 (810)
T ss_dssp THHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH------------HHHHHH
Confidence 4556666666554 677899999999999999999999999885 999999987665 899999
Q ss_pred HHHHHHhc-CCh-hhHHHHHhCCC----hHHHHHHHhcc--cCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH-hcC
Q 005144 137 AFALGLLA-VKP-EHQQLIVDNGA----LSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEG 207 (712)
Q Consensus 137 ~~~L~~l~-~~~-~~~~~~~~~~~----l~~L~~lL~~~--~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~ 207 (712)
+++|.+++ ... +.....++.|. ++.++++|.++ +. +++..++|+|.+++. ++..+..++ +.|
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~--------~v~~~AveaLayLS~-~~~vk~~lv~d~g 421 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK--------DIRRWAADGLAYLTL-DAECKEKLIEDKA 421 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCS--------SHHHHHHHHHHHHTT-SHHHHHHHHHCHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHHHHHhC-CcHHHHHHHHccc
Confidence 99999997 221 22222333444 55677777766 33 899999999999997 455555555 579
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----------------------------cH---HHHHhCCCHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------------------NK---NQIVECNALPTLI 255 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~-----------------------------~~---~~~~~~~~l~~L~ 255 (712)
++|.|+.+|+++++.++..|+++|.||+.+.+. .+ +.+++.|+++.|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999975421 12 6778899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhh--hhhcC
Q 005144 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH--IVQRG 333 (712)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--l~~~~ 333 (712)
.+++++++.++..|+|+|+|++. +++++..+++.|+++.|+.+|.++++..++.|+|+|.|++......... ....+
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 99999999999999999999985 5779999999999999999999999999999999999998643222110 01146
Q ss_pred ChHHHHHHhCCC-CHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHH
Q 005144 334 AVRPLIEMLQSP-DVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 406 (712)
Q Consensus 334 ~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 406 (712)
++|.|+.+|.++ +...+..|+++|.||+. ..+.+.|+++.|++++.+.++.++..|+++|+||+.+++....+
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~ 660 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH
Confidence 899999999765 44556789999999997 67888999999999999999999999999999999988776666
Q ss_pred HhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC-CCcccchhhc-cC
Q 005144 407 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID-GG 484 (712)
Q Consensus 407 ~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~-~~ 484 (712)
.+. .+.++.|+.++.+.+..++..|+++|.+++. ++...+.+.+ .|
T Consensus 661 v~~--------------------------------~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g 708 (810)
T 3now_A 661 EGN--------------------------------NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS 708 (810)
T ss_dssp HSS--------------------------------SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT
T ss_pred Hhc--------------------------------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 531 2357779999999999999999999999988 4556666667 89
Q ss_pred chHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 485 GLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 485 ~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
+++.|++++.+++..+|..|++++.|+..+
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999874
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.5e-35 Score=318.72 Aligned_cols=363 Identities=23% Similarity=0.311 Sum_probs=316.2
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..+|.+|++|.+. .+++++.+|+|+|+|++. +++++..+++.|++|.|+.+|.+++. ++++.
T Consensus 100 G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~ 162 (510)
T 3ul1_B 100 GLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQ 162 (510)
T ss_dssp THHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3577777777654 467789999999999987 68899999999999999999998877 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
|+|+|+||+ ++++++..+.+.|+++.|+.+|...+.... ...+++.++|++.+++.+...........+++|.|++
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 239 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh---hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH
Confidence 999999999 789999999999999999999987543221 1267889999999999876666666666789999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
++.+++++++..++++|.+|+.+.++....+.+.|+++.|+.++.+++..++..++++|+|++..++..+..+++.|+++
T Consensus 240 LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 99999999999999999999987777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHh
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAH 367 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~ 367 (712)
.|+.+|.+++..+++.++|+|+|++.+++.++..+.+.|+++.|+.++.+.+.++++.|+++|+|++. ..+.+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999997 56889
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHhcccCcch-------hHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh
Q 005144 368 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 440 (712)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~ 440 (712)
.|++++|+++|.+.++.++..++++|.|+....+. ...+.
T Consensus 400 ~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie--------------------------------- 446 (510)
T 3ul1_B 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE--------------------------------- 446 (510)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------------------------------
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH---------------------------------
Confidence 99999999999999999999999999998642111 11122
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Q 005144 441 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 472 (712)
Q Consensus 441 ~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~ 472 (712)
+.+++..+-.+..+.+.++...|..+|-..-.
T Consensus 447 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 447 ECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 33455666677778899999999999877643
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.9e-34 Score=317.19 Aligned_cols=399 Identities=19% Similarity=0.268 Sum_probs=348.3
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCC-CCCccccCCCcccHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (712)
.++.++..|.+. +++.+..|++.|.++... ...+..+++.|++|.|+.+|.++ +. .++.
T Consensus 88 ~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~~ 149 (530)
T 1wa5_B 88 ELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQL 149 (530)
T ss_dssp CHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHHH
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHHH
Confidence 356666666543 677899999999999763 45567788999999999999886 44 8999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.|+|+|++++ .+++.+..+...|+++.|+.+|.+.+. +++..++++|.+++...+..+..+...|+++.|+
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 221 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence 9999999999 778889999999999999999997655 9999999999999987778888888999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
.++.+.++.++..++++|.+|+.+...........++++.|+.++.++++.++..++++|++|+...++....+.+.|++
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 301 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH
Confidence 99999999999999999999997553444455567899999999999999999999999999998878888888899999
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHHh
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIAH 367 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~ 367 (712)
+.|+.+|.+.++.++..++++|++++.+++.....+.+.|+++.|+.+|.++++.++..|+++|++++. ..+.+
T Consensus 302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999998777777888889999999999999999999999999999985 45678
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHhcccC--c--chhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 368 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--E--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
.++++.|+.++.+.++.++..|+++|++++.. + +....+.+.|
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~--------------------------------- 428 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG--------------------------------- 428 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT---------------------------------
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC---------------------------------
Confidence 89999999999999999999999999999763 2 3444444433
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc------------ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhh
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 511 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L 511 (712)
+++.|+.++.+.++.++..++.+|.++....+ ....+.+.||++.|..++.++++.++..|..+|.++
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66778999999999999999999999965432 345678899999999999999999999999999988
Q ss_pred hccc
Q 005144 512 ANKA 515 (712)
Q Consensus 512 ~~~~ 515 (712)
....
T Consensus 509 ~~~~ 512 (530)
T 1wa5_B 509 FGEE 512 (530)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8654
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-34 Score=317.69 Aligned_cols=362 Identities=23% Similarity=0.320 Sum_probs=315.7
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..+|.+|+.|... .++.++.+|+|+|++++. +++.+..+++.|++|.|+.+|.+++. ++++.
T Consensus 119 G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~ 181 (529)
T 3tpo_A 119 GLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQ 181 (529)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHH
Confidence 4567777777554 467799999999999998 57888899999999999999999887 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
|+|+|+||+ ++++++..+.+.|+++.|+.+|...+.... ...+++.++|++.+++.+...........+++|.|+.
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 258 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh---HHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH
Confidence 999999999 789999999999999999999986543211 1267889999999999876666666666789999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 215 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
++.+++++++..++|+|.+++.+.++....+.+.|+++.|+.++.++++.++..++++|+|++.+++.....+++.|+++
T Consensus 259 LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 259 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 99999999999999999999987777788888999999999999999999999999999999999899999999999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHh
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAH 367 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~ 367 (712)
.|+.+|.++++.+++.++|+|+|++.+++..+..+.+.|++|.|+.++.+.+.+++..|+++|+|++. ..+.+
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999997 56889
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHhcccCcc-------hhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh
Q 005144 368 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-------NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 440 (712)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~ 440 (712)
.|++++|+++|.+.++.++..++.+|.|+....+ ....+.+.|
T Consensus 419 ~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g------------------------------ 468 (529)
T 3tpo_A 419 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG------------------------------ 468 (529)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT------------------------------
T ss_pred CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC------------------------------
Confidence 9999999999999999999999999999863211 111223333
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 441 HGRVLNHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 441 ~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
++..+-.+..+.+.++...|..+|-..-
T Consensus 469 ---gl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 469 ---GLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp ---CHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred ---cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 4555666677888999999999887653
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=8e-35 Score=321.01 Aligned_cols=427 Identities=22% Similarity=0.231 Sum_probs=365.5
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
..++.+++.|.+. .+++++..|+.+|.+++.+++++..+++.|++|.|+++|+++++ +++..|
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a 121 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 4567777777543 36678999999999999998899999999999999999998766 899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
+++|.+++ .++..+..+.+.|+++.|+.+|.+.+. +++..++.+|.+++.+++..+..+...|+++.|+.+
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 667788888899999999999987654 888899999999998888889899999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005144 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (712)
Q Consensus 216 L~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (712)
+++++ ...+..++.+|.+++. ++.++..+.+.|+++.|+.++.++++.++..++++|.+++...+... ...++++
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~ 269 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLG 269 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHH
Confidence 98765 5577788999999996 77888899999999999999999999999999999999987654321 1246899
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHHH---------H
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ---------A 363 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~---------~ 363 (712)
.|+.++.+.+++++..++++|++++.++++++..+.+.|+++.|++++.+ .++.++..++++|+|++. .
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998777889999999999999999964 458999999999999975 3
Q ss_pred HHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhh-hh---------------
Q 005144 364 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA-TK--------------- 426 (712)
Q Consensus 364 ~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~-~~--------------- 426 (712)
.+.+.|+++.|++++.+.+ +.++..++++|+|++.++++...+.+.|+++.|++....... .+
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 6778899999999998776 699999999999999998888999999999988765432110 00
Q ss_pred -------hHHHHHHHHH-------HHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHH
Q 005144 427 -------DCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 492 (712)
Q Consensus 427 -------~~~~~~l~~l-------~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~l 492 (712)
......+.++ ....+.++++.|+.++.++++.++..|+++|++++.+++.+..+.+.|+++.|.++
T Consensus 430 ~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 1112222222 12346788999999999999999999999999999887788889999999999999
Q ss_pred hcCCCchhhhhhHHHHHhhh
Q 005144 493 LGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 493 l~~~~~~~~~~a~~~L~~L~ 512 (712)
+.+++++++.+|.++|.+|+
T Consensus 510 ~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 510 LHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999874
No 9
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=320.49 Aligned_cols=432 Identities=22% Similarity=0.252 Sum_probs=365.7
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
.++.+++.|.+. ++.++..|+.+|.+++.+...+..+... |+++.|+++|.+.+. ++++..|
T Consensus 15 ~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A 77 (644)
T 2z6h_A 15 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCT 77 (644)
T ss_dssp THHHHHHHHTCS------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHH
T ss_pred hHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHH
Confidence 467777777653 7789999999999999987777777654 899999999986522 2899999
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 137 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
+.+|.+++..++.+..+.+.|+++.|+.+|.+.+. .++..++++|.+++...+..+..+.+.|+++.|+.+|
T Consensus 78 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 99999999778899999999999999999988765 9999999999999987777888888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005144 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (712)
.++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++.+ ..++..++.+|++++. ++..+..+++.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHH
Confidence 9999999999999999999878899999999999999999998764 6788899999999986 4667788888887777
Q ss_pred HHHhhc---------------------------------------cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChH
Q 005144 296 VIGLLS---------------------------------------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (712)
Q Consensus 296 L~~lL~---------------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (712)
|+.++. +.+++++..++++|++++.+++.++..+.+.|+++
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 766554 45667778888888888876667788888999999
Q ss_pred HHHHHhCC-C-CHHHHHHHHHHHHHHHH---------HHHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhcccCcchhH
Q 005144 337 PLIEMLQS-P-DVQLREMSAFALGRLAQ---------AGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVA 404 (712)
Q Consensus 337 ~L~~ll~~-~-~~~v~~~a~~~L~~l~~---------~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 404 (712)
.|+.++.+ + .+.++..++++|+||+. ..+.+.++++.|+++|.+.+ +.++..++++|+||+.+++++.
T Consensus 309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~ 388 (644)
T 2z6h_A 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHH
Confidence 99999965 3 38999999999999974 33677899999999998765 7999999999999999988989
Q ss_pred HHHhhCccccccccchhhh-----------------------hhhhHHHHHHHHH-------HHhhhhhhHHHHHHHHhh
Q 005144 405 DFIRVGGVQKLQDGEFIVQ-----------------------ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRV 454 (712)
Q Consensus 405 ~l~~~~~i~~L~~~~~~~~-----------------------~~~~~~~~~l~~l-------~~~~~~~~~~~Lv~ll~~ 454 (712)
.+.+.|+++.|++...... .........+.++ ....+.++++.|+.++.+
T Consensus 389 ~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~ 468 (644)
T 2z6h_A 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 468 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999998876544211 1111222233322 123477899999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 455 AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 455 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+++.++..|+++|++++..++.+..+.+.|+++.|.+++.++++.+|..|+++|.+|+.+.
T Consensus 469 ~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 469 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999988778888999999999999999999999999999999999865
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.1e-34 Score=308.31 Aligned_cols=359 Identities=19% Similarity=0.202 Sum_probs=306.0
Q ss_pred hcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhH
Q 005144 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (712)
Q Consensus 102 ~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (712)
..+.+|.|+.+|.+++. +++..|+++|.+|+ .+++++..+.+.|+|+.|+.+|.+.+. +
T Consensus 46 ~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~--------~ 105 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK--------E 105 (584)
T ss_dssp CCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------H
T ss_pred ccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------H
Confidence 57789999999998776 89999999999999 799999999999999999999998766 9
Q ss_pred HHHHHHHHHHHHhhc-CCcchhHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh
Q 005144 181 VIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (712)
Q Consensus 181 v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll 258 (712)
+++.|+++|.||+.+ ++.++..+.+.|+||.|+.+|.+ .+.+++..++++|++|+. ++.++..+.+ ++++.|+.++
T Consensus 106 vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL 183 (584)
T 3l6x_A 106 VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHH
Confidence 999999999999985 68899999999999999999997 578999999999999996 7788888886 5799999976
Q ss_pred c------------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhhcc------CChhhHHHHHH
Q 005144 259 R------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAAL 313 (712)
Q Consensus 259 ~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~ 313 (712)
. ..++.++.+|+++|.||+..+++.++.+++. |+++.|+.++.+ .+...++.|++
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~ 263 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 1 2357999999999999999888888888885 556799999975 46788999999
Q ss_pred HHHHHhcCCc-------------------------chhhhhhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHHH-----
Q 005144 314 LLGQFAATDS-------------------------DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ----- 362 (712)
Q Consensus 314 ~L~~l~~~~~-------------------------~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~----- 362 (712)
+|.||+.... .....+.+.++++.|+.+|+ +.++.+++.|+++|.||+.
T Consensus 264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~ 343 (584)
T 3l6x_A 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343 (584)
T ss_dssp HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence 9999985411 11223344566778899994 5789999999999999974
Q ss_pred -----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHH
Q 005144 363 -----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 437 (712)
Q Consensus 363 -----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~ 437 (712)
..+.+.++++.|+++|.+++..++..|+++|+||+.++.++..+ ..|
T Consensus 344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g--------------------------- 395 (584)
T 3l6x_A 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKH--------------------------- 395 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHH---------------------------
T ss_pred cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhC---------------------------
Confidence 23455788999999999999999999999999999988776554 333
Q ss_pred HhhhhhhHHHHHHHHhhh--------hhhHHHHHHHHHHHhcC-CCcccchhhccCchHHHHHHhcCC--CchhhhhhHH
Q 005144 438 EKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGAV 506 (712)
Q Consensus 438 ~~~~~~~~~~Lv~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~ 506 (712)
+++.|+.+|.++ +.+++..|+++|+|++. +++++..+.+.|+++.|++++.++ .+.+++.|++
T Consensus 396 ------~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 396 ------AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp ------HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred ------CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 567788888876 35789999999999965 566889999999999999999986 7889999999
Q ss_pred HHHhhhcccc
Q 005144 507 ALFKLANKAT 516 (712)
Q Consensus 507 ~L~~L~~~~~ 516 (712)
+|++|..+..
T Consensus 470 vL~nl~~~~e 479 (584)
T 3l6x_A 470 VLQTIWGYKE 479 (584)
T ss_dssp HHHHHHTSHH
T ss_pred HHHHHHcCHH
Confidence 9999998764
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-34 Score=319.59 Aligned_cols=383 Identities=19% Similarity=0.210 Sum_probs=322.6
Q ss_pred hHHHHHHHHHHHHHhhcC-hhhHHHHH-hcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHH
Q 005144 76 DRAAAKRATHVLAELAKN-EEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (712)
+.+....|++++.++... ++....++ ..|+++.|+.++.+++. .++..|+|++++++.++.+|+.+
T Consensus 260 ~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~------------~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 260 DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE------------LQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp CHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH------------HHHHHHHHHHHHHTTSHHHHHTT
T ss_pred ChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCcHHHHHH
Confidence 445578999999999985 66666665 78999999999999877 89999999999999889999999
Q ss_pred HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-cchhHHHhcC----ChHHHHHhhcCC--CHHHHHH
Q 005144 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEG----GIPPLVELLEFT--DTKVQRA 226 (712)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~----~i~~L~~lL~~~--~~~v~~~ 226 (712)
.+.|+ +.|+.++.+.+. .++..|+++|++++.... +.....+..| .++.++++|.++ +++++..
T Consensus 328 ~~~gv-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~ 398 (810)
T 3now_A 328 CEQGV-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398 (810)
T ss_dssp HHHHH-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred HHcCc-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99875 999999986554 888999999999974321 1111122233 356788888887 8899999
Q ss_pred HHHHHHHhhcCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh------------------------
Q 005144 227 AAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP------------------------ 281 (712)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~------------------------ 281 (712)
|+++|.+|+. .+..+..+. +.|+++.|+.+++++++.++..++++|+||+.+.+
T Consensus 399 AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 399 AADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 9999999996 566666665 57999999999999999999999999999998542
Q ss_pred -----hH---HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHH
Q 005144 282 -----NI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (712)
Q Consensus 282 -----~~---~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 353 (712)
.. .+.+++.|+++.|+.++.++++.++++++|+|.|++. +++++..+++.|++|.|+.+|.++++..++.|
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~A 556 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHA 556 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHH
Confidence 12 3788899999999999999999999999999999985 67899999999999999999999999999999
Q ss_pred HHHHHHHHH---HHH-----HhcCChHHHHHhhccCC-hhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchhhh
Q 005144 354 AFALGRLAQ---AGI-----AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ 423 (712)
Q Consensus 354 ~~~L~~l~~---~~~-----~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~ 423 (712)
+++|.|++. ... ...+++++|+++|++.. ...+..|+++|.||+.. ++++..+++.|
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG------------- 623 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ------------- 623 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------------
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-------------
Confidence 999999997 111 12469999999998653 45567899999999886 45666666655
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhc-cCchHHHHHHhcCCCchhhh
Q 005144 424 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQL 502 (712)
Q Consensus 424 ~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~ 502 (712)
+++.|+.+|.++++.++..|+++|+|++.+++.+..+.+ .|+++.|+.++.+++..+|.
T Consensus 624 --------------------~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 624 --------------------GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp --------------------HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred --------------------CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHH
Confidence 566789999999999999999999999998887766665 68999999999999999999
Q ss_pred hhHHHHHhhhcc
Q 005144 503 DGAVALFKLANK 514 (712)
Q Consensus 503 ~a~~~L~~L~~~ 514 (712)
.|+++|.+|+.+
T Consensus 684 ~Aa~ALanLt~~ 695 (810)
T 3now_A 684 ACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC
Confidence 999999999984
No 12
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.6e-34 Score=327.52 Aligned_cols=430 Identities=22% Similarity=0.227 Sum_probs=366.2
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
.++.+++.|.+. .+++++..|+.+|.+++.+++++..+.+.|+++.|+++|++++. .++..|+
T Consensus 193 ~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~ 255 (780)
T 2z6g_A 193 MVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAI 255 (780)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred hHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 344444444432 36778999999999999988889999999999999999998766 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
++|.+|+ ..+..+..+.+.|+++.|+.+|.+.+. .++..++.+|.+++..+++.+..+...|+++.|+.++
T Consensus 256 ~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 9999999 667888888899999999999987554 8889999999999987888888889999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005144 217 EFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (712)
Q Consensus 217 ~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (712)
++.+ ...+..++.+|.+|+. .+.++..+.+.|+++.|+.++.+.++.++..++++|.+|+...... ....++++.
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~ 403 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGT 403 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHH
Confidence 8876 4566788999999996 6778888999999999999999999999999999999998765331 112457899
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-C-CHHHHHHHHHHHHHHHH---------HH
Q 005144 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQ---------AG 364 (712)
Q Consensus 296 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~-~~~v~~~a~~~L~~l~~---------~~ 364 (712)
|+.+|.+.+++++..++++|++++.+++..+..+.+.|+++.|+.+|.+ . ...++..|+++|+||+. ..
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999999999999998777888899999999999999965 3 35899999999999985 36
Q ss_pred HHhcCChHHHHHhhccCC-hhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhh--------------------
Q 005144 365 IAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-------------------- 423 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~-------------------- 423 (712)
+...++++.|++++.+.+ +.++..++++|+||+.++++...+.+.|+++.|++......
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 778899999999998776 49999999999999998888888999999988876543211
Q ss_pred ---hhhhHHHHHHHHHH-------HhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHh
Q 005144 424 ---ATKDCVAKTLKRLE-------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 493 (712)
Q Consensus 424 ---~~~~~~~~~l~~l~-------~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll 493 (712)
...+.....+.++. .....++++.|+.++.++++.++..|+.+|++++.+++.+..+.+.|+++.|.+++
T Consensus 564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 11222333333332 13467899999999999999999999999999998888889999999999999999
Q ss_pred cCCCchhhhhhHHHHHhhhcccc
Q 005144 494 GSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 494 ~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
.++++.+|..|+++|.+++.+.+
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999999998764
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=300.17 Aligned_cols=360 Identities=19% Similarity=0.217 Sum_probs=296.1
Q ss_pred HHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCCh-
Q 005144 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (712)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l- 159 (712)
+..+.|..++.+++.|..+++.|++|.|+++|+..+.+..-..+...+++++..|+|+|.||+ ++|+......+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 488899999999999999999999999999999754310000111234599999999999999 888887777777777
Q ss_pred ---------HHHHHHHhcccCCcc-c-----cchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC------
Q 005144 160 ---------SHLVNLLKRHMDSNC-S-----RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (712)
Q Consensus 160 ---------~~L~~lL~~~~~~~~-~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------ 218 (712)
+.+++++.......+ . .+....+.+|+|+|.|++. ++++|..+.+.|++++|+.+|..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 556666765431111 0 0111334489999999987 68899999999999999999952
Q ss_pred -----CCHHHHHHHHHHHHHhhcCChhcHHHHHh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcC
Q 005144 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (712)
Q Consensus 219 -----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~ 291 (712)
.++.++..|+|+|.||+.+++.++..+.. .|+++.|+.+|.+++++++..|+++|+||+.. +++++..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 24678999999999999877767777754 45599999999999999999999999999985 577889999999
Q ss_pred ChHHHHHhh-ccCChhhHHHHHHHHHHHhcCCcchhhhhh-hcCChHHHHHHhCCCCH----HHHHHHHHHHHHHHH---
Q 005144 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ--- 362 (712)
Q Consensus 292 ~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~l~~--- 362 (712)
+++.|+.+| .+.+..+++.++.+|+||+.++++++..+. ..|+++.|+.+|.+.++ .+++.++++|.||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556889999999999999985667777777 78999999999977543 599999999999983
Q ss_pred ------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc-cCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHH
Q 005144 363 ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 435 (712)
Q Consensus 363 ------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~ 435 (712)
..+.+.|+++.|+++|.+.+..+++.|+++|+||+ .+++++..+.+.|+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------------------------ 422 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA------------------------ 422 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC------------------------
Confidence 67888999999999999999999999999999998 57888888888774
Q ss_pred HHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 436 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 436 l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
++.|+.+|.++++.++..|+++|.||+....
T Consensus 423 ---------I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 423 ---------VSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp ---------HHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ---------HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 5558888999999999999999999987654
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.9e-33 Score=307.54 Aligned_cols=429 Identities=21% Similarity=0.245 Sum_probs=360.5
Q ss_pred HHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHhhhcCC-CCCccccCCCcccHHHH
Q 005144 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (712)
Q Consensus 56 ~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~ 133 (712)
...++.+++.|.+. ++.++..|+.+|.+++.+++.+..+... |+++.|+++|.+. +. +++
T Consensus 16 ~~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~------------~~~ 77 (529)
T 1jdh_A 16 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 77 (529)
T ss_dssp -CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred HhhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCH------------HHH
Confidence 44577888877753 7789999999999999988887777754 8999999999754 33 899
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
..|+++|.+++..++.+..+.+.|+++.|+.+|.+.++ .++..++++|.+++.+++..+..+.+.|++|.|+
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 99999999999778899999999999999999988765 9999999999999998778888888999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
.++.++++.++..++.+|.+++.++++.+..+.+.|+++.|+.++++++ ...+..++.+|.+++.. +..+..+.+.|+
T Consensus 150 ~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~ 228 (529)
T 1jdh_A 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 228 (529)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCC
Confidence 9999999999999999999999888899999999999999999998764 56777789999999864 677889999999
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHH
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIA 366 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~ 366 (712)
++.|+.++.++++++++.++++|.+++...+.. ....++++.|++++.+.+++++..++++|++++. ..+.
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999754322 1234789999999999999999999999999986 6778
Q ss_pred hcCChHHHHHhhcc--CChhHHHHHHHHHHhcccC-cc---hhHHHHhhCccccccccchhhh--hhhhHHHHHHHHHH-
Q 005144 367 HNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADN-ED---NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRLE- 437 (712)
Q Consensus 367 ~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~-~~---~~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~~l~~l~- 437 (712)
+.|+++.|++++.+ .++.++..++.+|+||+.. ++ .+..+.+.|+++.|.+...... .......+.+.++.
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 88999999999965 3489999999999999875 23 3568889999998877655332 23333444554443
Q ss_pred ------HhhhhhhHHHHHHHHhhhhhhHHHHH----------------------HHHHHHhcCCCcccchhhccCchHHH
Q 005144 438 ------EKIHGRVLNHLLYLMRVAEKGVQRRV----------------------ALALAHLCSPDDQRTIFIDGGGLELL 489 (712)
Q Consensus 438 ------~~~~~~~~~~Lv~ll~~~~~~v~~~a----------------------~~~L~~l~~~~~~~~~l~~~~~~~~L 489 (712)
...+.++++.|+.++.++++.++..| +.+|++++...+++..+.+.|+++.|
T Consensus 386 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l 465 (529)
T 1jdh_A 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465 (529)
T ss_dssp SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHH
Confidence 23467899999999999888877754 45666677777777888999999999
Q ss_pred HHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 490 LGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 490 ~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++++.++++.++..|+++|.+|+.+
T Consensus 466 ~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 466 VQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999854
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=9.3e-34 Score=303.34 Aligned_cols=370 Identities=19% Similarity=0.236 Sum_probs=306.1
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
.++.+|..|.+. +.+++..|+++|.+++. +++++..+++.|+||.|+++|.+++. ++++.|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 377788888765 67789999999999997 78999999999999999999999877 999999
Q ss_pred HHHHHHhcC--ChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 137 ~~~L~~l~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
+++|.||+. +++++..+.+.|+++.|+.+|.+..+. ++++.++++|++|+. ++.++..+.. +++|.|++
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999874332 889999999999998 6778877775 67999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhhcCChhcHHHHHhC-CCHHHHHHhhcC------CCHHHHHHH
Q 005144 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (712)
Q Consensus 215 lL~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a 269 (712)
++. ..++.++..|+++|+||+..+++.+..+.+. |+++.|+.++++ .+...++.|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 872 2357999999999999998777778888875 556799999864 456789999
Q ss_pred HHHHHHhhcCChhH-------H------------------HHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcCCc
Q 005144 270 VGVIGNLVHSSPNI-------K------------------KEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDS 323 (712)
Q Consensus 270 ~~~L~~L~~~~~~~-------~------------------~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 323 (712)
+++|.||+...... . ..+.+.++++.++.+|.. .++.+++.|+++|.|++.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999998652110 0 011122346778889964 579999999999999997652
Q ss_pred ----chhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHhcCChHHHHHhhccC--------ChhHHH
Q 005144 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----AGIAHNGGLVPLLKLLDSK--------NGSLQH 387 (712)
Q Consensus 324 ----~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~L~~ll~~~--------~~~v~~ 387 (712)
..+..+.+.+++|.|+.+|.+.++.+++.++++|+||+. ...+..++++.|+++|.+. +.+++.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~ 421 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHH
Confidence 233455667899999999999999999999999999998 5556889999999999665 467899
Q ss_pred HHHHHHHhc-ccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh--hhhHHHHHH
Q 005144 388 NAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVA 464 (712)
Q Consensus 388 ~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~--~~~v~~~a~ 464 (712)
.|+++|.|| +.++++...+.+.|+ ++.|+.+++++ ++.++..|+
T Consensus 422 ~a~~tL~NL~a~~~~~~~~I~~~g~---------------------------------I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 422 SILNTINEVIAENLEAAKKLRETQG---------------------------------IEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTH---------------------------------HHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCC---------------------------------hHHHHHHHhCCCCChHHHHHHH
Confidence 999999999 467888888888774 55688999886 889999999
Q ss_pred HHHHHhcCCCcccchhhccCchH
Q 005144 465 LALAHLCSPDDQRTIFIDGGGLE 487 (712)
Q Consensus 465 ~~L~~l~~~~~~~~~l~~~~~~~ 487 (712)
++|+++....+.+..+.+.|.-+
T Consensus 469 ~vL~nl~~~~elr~~~kk~G~~~ 491 (584)
T 3l6x_A 469 LVLQTIWGYKELRKPLEKEGWKK 491 (584)
T ss_dssp HHHHHHHTSHHHHHHHHTTTCCG
T ss_pred HHHHHHHcCHHHHHHHHHcCCCH
Confidence 99999999988888887766543
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.5e-33 Score=301.75 Aligned_cols=355 Identities=19% Similarity=0.271 Sum_probs=303.4
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
.+|.|+.+|.+++. +++..|+++|.+++ .++..+..+.+.|+++.|+.+|.+.+. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999999887 89999999999999 777788899999999999999997655 8999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh----
Q 005144 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---- 258 (712)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll---- 258 (712)
.|+++|.|++.++++++..+.+.|++|.|+++|. +++++++..++++|+||+.+ +.++..+.+ |+++.|+.++
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977899999999999999999999 88999999999999999975 788888888 9999999999
Q ss_pred ----cC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHh
Q 005144 259 ----RS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (712)
Q Consensus 259 ----~~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~ 319 (712)
.+ .++.+...|+|+|+||+.. ++.+..+.+. |+++.|+.+|.+ .+..+.+.++++|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 32 2466778999999999987 8888888887 999999999985 45678889999999986
Q ss_pred cC--------------------------------------------------CcchhhhhhhcCChHHHHHHhC-CCCHH
Q 005144 320 AT--------------------------------------------------DSDCKVHIVQRGAVRPLIEMLQ-SPDVQ 348 (712)
Q Consensus 320 ~~--------------------------------------------------~~~~~~~l~~~~~l~~L~~ll~-~~~~~ 348 (712)
.. .+.....+++.++++.|+.+|. +.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 21 1123345667788999999995 46799
Q ss_pred HHHHHHHHHHHHHH------H-----HHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccc
Q 005144 349 LREMSAFALGRLAQ------A-----GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 417 (712)
Q Consensus 349 v~~~a~~~L~~l~~------~-----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ 417 (712)
+++.|+|+|+|++. . .+.+.++++.|+++|.+++..+++.|+++|.|++.++++...+..
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--------- 370 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--------- 370 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH---------
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH---------
Confidence 99999999999985 1 123589999999999999999999999999999988766444322
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhh------hhHHHHHHHHHHHhcC-CCcccchhhccCchHHHH
Q 005144 418 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLL 490 (712)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~ 490 (712)
++++.|+++|.+++ +++...++++|.++.. +++....+.+.||++.|+
T Consensus 371 -------------------------~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 371 -------------------------QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp -------------------------HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred -------------------------hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 25667888888764 4688899999999965 445788889999999999
Q ss_pred HHhcCC-CchhhhhhHHHHHhhhcccc
Q 005144 491 GLLGST-NPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 491 ~ll~~~-~~~~~~~a~~~L~~L~~~~~ 516 (712)
+++.++ ++.+++.|++.|.++..+.+
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999999 99999999999999988764
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.7e-33 Score=302.16 Aligned_cols=396 Identities=17% Similarity=0.231 Sum_probs=339.5
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc--ChhhHHHHHhc-CCHHHHHhhhcCC-CCCccccCCCcccHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~-g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (712)
++.+++.|.+. ++.++..|+..|..+.. .......+++. |++|.|+++|.++ +. .++.
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~------------~v~~ 83 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC------------TLQF 83 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCH------------HHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCH------------HHHH
Confidence 56677766543 67789999999999754 22233446666 9999999999887 44 8999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
.|+++|.+++ .+++....+.+.|+++.|+.+|.+.+. +++..++++|.+++...+..+..+...|+++.|+
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 155 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 9999999999 678888888899999999999988655 9999999999999987777888888899999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC
Q 005144 214 ELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (712)
Q Consensus 214 ~lL~~-~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 291 (712)
.++.+ .++.++..++++|++++.+. +.....+. .++++.|+.++.++++.++..++++|++++...++....+...|
T Consensus 156 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 99996 68999999999999999754 33333333 67999999999999999999999999999988777788888899
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGI 365 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~ 365 (712)
+++.|+.++.+.++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..++++|++++. ..+
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~ 314 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999998777777778888999999999999999999999999999995 456
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccC--cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
.+.++++.|++++.+.++.++..|+++|.+++.. ++....+.+.|
T Consensus 315 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~--------------------------------- 361 (450)
T 2jdq_A 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG--------------------------------- 361 (450)
T ss_dssp HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHT---------------------------------
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---------------------------------
Confidence 6789999999999999999999999999999763 44444444433
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc------------ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhh
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 511 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L 511 (712)
+++.|+.++.+.++.++..|+.+|.+++...+ ....+.+.||++.|..++.+++..++..|..+|.++
T Consensus 362 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 362 CIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56778899999999999999999999976432 245678889999999999999999999999999988
Q ss_pred hcc
Q 005144 512 ANK 514 (712)
Q Consensus 512 ~~~ 514 (712)
...
T Consensus 442 ~~~ 444 (450)
T 2jdq_A 442 FGT 444 (450)
T ss_dssp HCC
T ss_pred CCc
Confidence 754
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=293.80 Aligned_cols=362 Identities=20% Similarity=0.218 Sum_probs=293.6
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCc----cccchhH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~----~~~~~~~ 180 (712)
.++.|+..+.+.+. + ...+.|..+..+++.+..+.+.|++|.|+++|...+.+. ....+.+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 35666666765555 3 377888899988889999999999999999999653310 0111239
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHhhc
Q 005144 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (712)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~~L~~ 236 (712)
++..|+|+|.|++.+.++......+.+++ +.+++++.+.. .+ ++. .|+|+|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999888887777777777 66677776542 11 433 89999999985
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHHhhccCC
Q 005144 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCC 304 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~~ 304 (712)
+++++..+.+.|+++.|+.++.. .++.++..|+|+|.||+..++..+..+.. .|.++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 68999999999999999999942 24678999999999999887767666655 455999999999999
Q ss_pred hhhHHHHHHHHHHHhcC-CcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH------HHHH-hcCChHHHH
Q 005144 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ------AGIA-HNGGLVPLL 375 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~------~~~~-~~~~i~~L~ 375 (712)
++++..++|+|.|++.+ ++.++..+.+.|+++.|+++| .+.++.+++.++.+|+||+. ..+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999975 467888999999999999975 66789999999999999997 3444 789999999
Q ss_pred HhhccCCh----hHHHHHHHHHHhccc----CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHH
Q 005144 376 KLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 447 (712)
Q Consensus 376 ~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 447 (712)
+++.+.+. .+++.|+++|+||+. +++++..+.+.| +++.
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---------------------------------~i~~ 383 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---------------------------------CLQT 383 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---------------------------------cHHH
Confidence 99976654 499999999999984 778777777776 4566
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 448 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 448 Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
|+.+|++++..++..|+++|+|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.+|+.+.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999985 5668888999999999999999999999999999999999875
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.1e-32 Score=295.02 Aligned_cols=358 Identities=16% Similarity=0.224 Sum_probs=296.1
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
++.++..|.+. +++.+..|+++|.+++. ++..+..+++.|++|.|+++|++++. +++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67788888775 66789999999999997 46678789999999999999998766 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHh-cccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
++|.||+ ++++++..+++.|+++.|+++|. +.+. ++++.++|+|.|++.+ +.++..+.. |++|.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 5444 9999999999999985 778888888 999999999
Q ss_pred hc--------C--------CCHHHHHHHHHHHHHhhcCChhcHHHHHhC-CCHHHHHHhhcC------CCHHHHHHHHHH
Q 005144 216 LE--------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (712)
Q Consensus 216 L~--------~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~ 272 (712)
+. + .++.+...|+|+|+||+.+ ++++..+.+. |+++.|+.++++ .+..+...++++
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 93 2 2467778999999999975 8888889987 999999999975 355678889999
Q ss_pred HHHhhcCC--------------------------------------------------hhHHHHHHHcCChHHHHHhhcc
Q 005144 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (712)
Q Consensus 273 L~~L~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~lL~~ 302 (712)
|.+++... +...+.+.+.|+++.|+.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986311 0111223345678889999975
Q ss_pred C-ChhhHHHHHHHHHHHhcCCcch-----hhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHhcCChH
Q 005144 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----AGIAHNGGLV 372 (712)
Q Consensus 303 ~-~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~i~ 372 (712)
+ ++.+++.++|+|+|++.++... +..+.+.|++|.|+++|.+++.++++.|+++|.|++. ..++..++++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~ 374 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFP 374 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhH
Confidence 4 6899999999999999865442 2234468999999999999999999999999999998 5556678999
Q ss_pred HHHHhhccCC------hhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 373 PLLKLLDSKN------GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 373 ~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
+|+++|.+.+ .++...++++|.|+.. +++....+.+.| ++
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g---------------------------------~l 421 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS---------------------------------ML 421 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH---------------------------------HH
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC---------------------------------CH
Confidence 9999997764 3688899999999954 455555555544 56
Q ss_pred HHHHHHHhhh-hhhHHHHHHHHHHHhcCCCcccc
Q 005144 446 NHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT 478 (712)
Q Consensus 446 ~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 478 (712)
+.|+.++.++ ++.++..|+++|.++....+.+.
T Consensus 422 ~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 7789999999 99999999999999988776553
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=9.1e-32 Score=306.52 Aligned_cols=429 Identities=21% Similarity=0.241 Sum_probs=361.1
Q ss_pred HHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHhhhcCC-CCCccccCCCcccHHHH
Q 005144 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (712)
Q Consensus 56 ~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~ 133 (712)
...++.+++.|.+ .++.++..|+.+|.+++.+...+..+... |+++.|+++|.+. +. +++
T Consensus 149 ~g~ip~Lv~lL~~------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~------------~vr 210 (780)
T 2z6g_A 149 TRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 210 (780)
T ss_dssp HHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred hCCHHHHHHHHCC------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCH------------HHH
Confidence 3455666666653 37789999999999999987777777754 8999999999765 34 899
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHH
Q 005144 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (712)
..|+++|.+|+..++++..+.+.|+++.|+.+|.+.+. .++..++++|.+++...+..+..+...|+++.|+
T Consensus 211 ~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv 282 (780)
T 2z6g_A 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHH
Confidence 99999999999778888899999999999999988765 9999999999999998888888888899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (712)
.++.+++..++..++.+|.+++..+++.+..+.+.++++.|+.++++.+ ...+..++.+|.+|+.. +..+..+++.|+
T Consensus 283 ~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~ 361 (780)
T 2z6g_A 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 361 (780)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhch
Confidence 9999999999999999999999878889999999999999999998865 45667889999999864 667888999999
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHH
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIA 366 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~ 366 (712)
++.|+.++.+.+..+++.++++|.+++...... ....++++.|+.++++.++.++..|+++|++|+. ..+.
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999754331 1235789999999999999999999999999987 5677
Q ss_pred hcCChHHHHHhhcc-CC-hhHHHHHHHHHHhcccC-cc---hhHHHHhhCccccccccchhhh--hhhhHHHHHHHHHH-
Q 005144 367 HNGGLVPLLKLLDS-KN-GSLQHNAAFALYGLADN-ED---NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRLE- 437 (712)
Q Consensus 367 ~~~~i~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~-~~---~~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~~l~~l~- 437 (712)
+.++++.|++++.+ .+ ..++..|+++|+||+.. ++ .+..+...|+++.|.+...... .......+.+.++.
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 88999999999965 33 48999999999999864 33 2457788899998877654332 23344455555553
Q ss_pred ------HhhhhhhHHHHHHHHhhhh----------------------hhHHHHHHHHHHHhcCCCcccchhhccCchHHH
Q 005144 438 ------EKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 489 (712)
Q Consensus 438 ------~~~~~~~~~~Lv~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L 489 (712)
...+.++++.|+.+|.+++ ++++..++++|++|+.+..++..+.+.|+++.|
T Consensus 519 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 598 (780)
T 2z6g_A 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHH
Confidence 2336788999999998765 346778999999999888888888999999999
Q ss_pred HHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 490 LGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 490 ~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++++.++++.++..|+.+|.+|+.+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999865
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.6e-31 Score=292.20 Aligned_cols=371 Identities=20% Similarity=0.294 Sum_probs=312.0
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
++.+++.|.+. .++.++..|+++|++++.+ ++++..+++.|++|.|+.+|.+++. +++..|+
T Consensus 119 v~~Lv~lL~~~-----~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~ 181 (528)
T 4b8j_A 119 VPRFVQFLTRE-----DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQAV 181 (528)
T ss_dssp HHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred HHHHHHHhCCC-----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHHH
Confidence 44445544433 2377899999999999995 8999999999999999999998766 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 216 (712)
|+|++|+ +.+.++..+...|+++.|+.+|....+ ..++..++|+|.+++...+. .......++++.|+.++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~-------~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL 253 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK-------LSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLI 253 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC-------HHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHT
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHH
Confidence 9999999 888999999999999999999954332 29999999999999986543 34455689999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005144 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (712)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L 296 (712)
.++++.++..++++|.+++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++..++...+.+++.|+++.|
T Consensus 254 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL 333 (528)
T ss_dssp TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence 99999999999999999998766667788899999999999999999999999999999999888888899999999999
Q ss_pred HHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHhc
Q 005144 297 IGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAHN 368 (712)
Q Consensus 297 ~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~ 368 (712)
+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+.++.++..|+++|+|++. ..+.+.
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 9999988 99999999999999998777778888999999999999998999999999999999997 566788
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHH
Q 005144 369 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 448 (712)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~L 448 (712)
|+++.|++++.+.++.++..++.+|.+|....+........+ .... .......+++..+
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~~~--------------------~~~i~~~~~~~~l 472 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD-VNVF--------------------SQMIDEAEGLEKI 472 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS-CCHH--------------------HHHHHHTTHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc-ccHH--------------------HHHHHHCCcHHHH
Confidence 999999999999999999999999999976443311111000 0000 0011234456778
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 449 LYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 449 v~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
..++.+.+++++..|..+|..+....+
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 888888999999999999998865543
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=7.5e-31 Score=288.48 Aligned_cols=371 Identities=17% Similarity=0.238 Sum_probs=314.3
Q ss_pred hhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHH
Q 005144 63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (712)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (712)
++.|...+.+. .++.++..|+++|++++. +++.+..+++.|++|.|+.+|.+++. +++..|+|+|+
T Consensus 132 i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~aL~ 198 (530)
T 1wa5_B 132 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIWALG 198 (530)
T ss_dssp HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 44444444332 267789999999999999 47888889999999999999998766 99999999999
Q ss_pred Hhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCC
Q 005144 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (712)
Q Consensus 142 ~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 220 (712)
+|+ ..+..+..+...|+++.|+.++.+.+. +++..++|+|.+++.+..+........++++.|+.++.+++
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d 270 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC
Confidence 999 678899999999999999999987443 89999999999999765344455667899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (712)
+.++..++++|.+|+.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++..++...+.+.+.|+++.|+.+|
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 99999999999999987777788888899999999999999999999999999999998888888889999999999999
Q ss_pred ccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---------HHHHhcCCh
Q 005144 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---------AGIAHNGGL 371 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---------~~~~~~~~i 371 (712)
.++++.++..|+++|++++.+++.....+++.|+++.|+.+|.+.++.++..++++|++++. ..+.+.|++
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 99999999999999999998777777788899999999999999999999999999999976 356678999
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 005144 372 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 451 (712)
Q Consensus 372 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~l 451 (712)
+.|+.++.+.++.++..++++|.++....+..... ..+..... .......++++.|..+
T Consensus 431 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~g~~~~L~~L 489 (530)
T 1wa5_B 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINEN--------------------ADFIEKAGGMEKIFNC 489 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHH--------------------HHHHHHTTHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHH--------------------HHHHHHcCcHHHHHHH
Confidence 99999999999999999999999998654332111 00000000 0112245567788888
Q ss_pred HhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 452 MRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 452 l~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
+.++++.++..|..+|.++....+
T Consensus 490 ~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 490 QQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HcCCCHHHHHHHHHHHHHHCCccc
Confidence 899999999999999999866544
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1e-30 Score=282.03 Aligned_cols=372 Identities=20% Similarity=0.254 Sum_probs=313.4
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (712)
..++.+++.|.+. .++.++..|+++|.+++. +++....+++.|++|.|+++|.++++ +++..
T Consensus 64 ~~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~ 126 (450)
T 2jdq_A 64 GVVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQ 126 (450)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CcHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3566666666543 367789999999999998 47777888899999999999998766 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHHHH
Q 005144 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLV 213 (712)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~ 213 (712)
|+++|++++ ..++.+..+.+.|+++.|+.++.+..+ .+++..++++|.+++... +.....+ ..+++|.|+
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~ 198 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLS 198 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHH
Confidence 999999999 778899999999999999999985322 299999999999999755 4333333 378999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 214 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
.++.++++.++..++++|.+++...++....+.+.|+++.|+.++.++++.++..++++|++++..++...+.+.+.|++
T Consensus 199 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 199 WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 99999999999999999999998667777788889999999999999999999999999999999888888888889999
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHH
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIA 366 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~ 366 (712)
+.|+.++.++++.++..++++|++++.+++.....+++.++++.|+.++.+.++.++..++++|++++. ..+.
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999999999999998777777888889999999999999999999999999999986 4466
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH
Q 005144 367 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 446 (712)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 446 (712)
+.++++.|++++.+.++.++..++++|.+++...+..... ..+.+..+ .......++++
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~g~~~ 417 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------------CALIEEAYGLD 417 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------------HHHHHHHHCHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------------HHHHHHcCcHH
Confidence 7899999999999999999999999999998654332111 11111110 01122345678
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 447 HLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 447 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
.|..++.++++.++..|..+|.++-..+
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 8889999999999999999999986543
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=293.51 Aligned_cols=390 Identities=19% Similarity=0.202 Sum_probs=328.1
Q ss_pred HHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHHHhcccCCccccch
Q 005144 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAV 178 (712)
Q Consensus 100 ~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~~~~~~ 178 (712)
.+..|+++.|+.+|++++. .+|..|+.+|++++.+...+..+... |+++.|+++|.+..+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~------- 70 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQ------------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND------- 70 (644)
T ss_dssp --CTTTHHHHHHHHTCSCH------------HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-------
T ss_pred hhhhchHHHHHHHHcCCCH------------HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-------
Confidence 3578999999999997766 99999999999999666677666654 889999999986533
Q ss_pred hHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh
Q 005144 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll 258 (712)
.+++..++.+|.+++. ++.++..+...|+++.|+++|.++++.++..|+++|.+++...+..+..+.+.|+++.|+.++
T Consensus 71 ~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 71 VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 2899999999999997 455888888999999999999999999999999999999987677788888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHH
Q 005144 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (712)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (712)
+++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++.+.+ ..++..++.+|.+++. ++.++..+++.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHH
Confidence 9999999999999999999888899999999999999999998764 5678889999999985 6788889999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC-cchhHHHHhhCccc
Q 005144 338 LIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQ 413 (712)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~ 413 (712)
|+.++.+.++.+++.++++|.+++. ......++++.|++++++.++.++..++++|.+|+.. ++++..+.+.|+++
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 9999999999999999999999987 2112236789999999999999999999999999875 57788899999999
Q ss_pred cccccchhhh---hhhhHHHHHHHHHHH-----------hhhhhhHHHHHHHHhhhh-hhHHHHHHHHHHHhcCCCcccc
Q 005144 414 KLQDGEFIVQ---ATKDCVAKTLKRLEE-----------KIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQRT 478 (712)
Q Consensus 414 ~L~~~~~~~~---~~~~~~~~~l~~l~~-----------~~~~~~~~~Lv~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 478 (712)
.|++...... .........+.++.. ....++++.|+.+|.+.+ +.++..|+++|+|++....++.
T Consensus 309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~ 388 (644)
T 2z6h_A 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHH
Confidence 9887655322 333344445554421 235678999999999885 6999999999999999888888
Q ss_pred hhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 479 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 479 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
.+.+.|+++.|++++.+++..+|..|+|++.+
T Consensus 389 ~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence 88999999999999999888999999887765
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7e-30 Score=260.35 Aligned_cols=278 Identities=21% Similarity=0.268 Sum_probs=240.4
Q ss_pred CCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccC---CccccchhHHHHHHHHHHHHHhhcCCcch
Q 005144 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAITNLAHENSSIK 200 (712)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 200 (712)
.|.+.++.+. +|+|+|+||+.++++|+.+++.|+++.|+.+|..... ........++++.|+|+|.|+|.+++.++
T Consensus 41 ~~~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 41 MPAPVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119 (354)
T ss_dssp CCCGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CCCcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4666676555 8999999999889999999999999999999964310 00011123899999999999998777777
Q ss_pred hHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhh
Q 005144 201 TRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 201 ~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~ 277 (712)
..+... |++|.|+.+|.+++++++..|+++|+||+.+ ++.++..+.+.|+++.|+.+ ++++++++++.|+.+|+||+
T Consensus 120 ~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777544 5599999999999999999999999999974 56788999999999999997 56678999999999999999
Q ss_pred cCChhHHHHHH-HcCChHHHHHhhccCCh----hhHHHHHHHHHHHhc---CCcchhhhhhhcCChHHHHHHhCCCCHHH
Q 005144 278 HSSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (712)
Q Consensus 278 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 349 (712)
..+++.+..+. ..|+++.|+.+|.+.+. ++++.++++|.|++. .+++++..+.+.|+++.|+.+|++.+..+
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHH
Confidence 86677777777 78999999999987654 589999999999996 67888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcch
Q 005144 350 REMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 350 ~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
++.|+++|+|++. ..+.+.|+++.|++++.+++..+++.|+++|.||+.+...
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999994 6788999999999999999999999999999999876443
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8.7e-30 Score=259.63 Aligned_cols=276 Identities=22% Similarity=0.210 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhC
Q 005144 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (712)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (712)
..+..|+++|.+++.++++|..+++.|+++.|+.+|..+.. .........+++++..|+|+|.||+ ++++.+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~-~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE-MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccc-cccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45668999999999999999999999999999999963210 0000001124489999999999999 677788777655
Q ss_pred -CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhc-CCcchhHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHH
Q 005144 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT 233 (712)
Q Consensus 157 -~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~ 233 (712)
|+++.|+.+|.+.+. ++++.++++|.|++.. ++.++..+.+.|++|.|+++| +++++.++..|+.+|+|
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 459999999987665 9999999999999974 567888999999999999975 66789999999999999
Q ss_pred hhcCChhcHHHHH-hCCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHHhhccCCh
Q 005144 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (712)
Q Consensus 234 L~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (712)
|+...++++..+. ..|+++.|+.++.++++ +++..|+++|.||+. .+++.++.+.+.|+++.|+.+|.+++.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9976777777777 78999999999987654 599999999999997 678899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.+++.|+++|+|++.++++++..+.+.|+++.|+++++++++.+++.|+++|.||+.
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 999999999999998788999999999999999999999999999999999999997
No 27
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=1.4e-27 Score=234.50 Aligned_cols=161 Identities=21% Similarity=0.346 Sum_probs=142.6
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 613 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 613 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||++.++.+
T Consensus 23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~ 102 (256)
T 3hve_A 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 102 (256)
T ss_dssp HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C
T ss_pred HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh
Confidence 44788999999999999999999999999999999999999887 6777899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHH
Q 005144 614 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 693 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~ 693 (712)
++.+++.+|++|+++.|+..|+.+|.+.++++||+.++.+|..|+++.|.+.|.+|+.+||.++.++++|.+|+.+.+.+
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKE 182 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776665
Q ss_pred HHH
Q 005144 694 IHN 696 (712)
Q Consensus 694 l~~ 696 (712)
++.
T Consensus 183 lL~ 185 (256)
T 3hve_A 183 VIS 185 (256)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 28
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=218.43 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=136.2
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..+++++.++|+++.++|+.|+|||.||+++|+||++||.++|+|+....|.++++++++|+.+++|+|+|++.++.+++
T Consensus 26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~ 105 (172)
T 3htm_A 26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 105 (172)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCch
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 682 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~ 682 (712)
.+++.+|++|+++.|+..|+.+|.+.++.+||+.++.+|..|+.+.|++.|.+||.+||.++.++++
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.9e-25 Score=220.44 Aligned_cols=239 Identities=31% Similarity=0.396 Sum_probs=225.3
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
|.+|.|+++|.+++. +++..|+++|.+++ ..++.+..+.+.|+++.|+.+|.+.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 578999999998876 99999999999999 777799999999999999999988765 999
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
..++++|.+++..++..+..+.+.|+++.|+.++.++++.++..++++|.+|+..++..+..+.+.|+++.|+.++++++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999977889999999999999999999999999999999999999778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|++++.+++..+..+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999998888888999999999999999999999999999999999987788888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005144 343 QSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (712)
+++++.+++.|+++|.|++.
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHc
Confidence 99999999999999999886
No 30
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.94 E-value=3.6e-27 Score=234.53 Aligned_cols=160 Identities=23% Similarity=0.401 Sum_probs=143.8
Q ss_pred HhhhcCCCcccEEEEec---CccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecC------CCCHHHHHHHHHHHhcC
Q 005144 536 DQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYTG 606 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Y~~ 606 (712)
..++.++.++||++.++ |+.|+|||.||+++|+||++||.++|+|+..+.|.++ ++++++|+.+++|+|||
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 45788999999999998 9999999999999999999999999999999999998 89999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhc
Q 005144 607 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 686 (712)
Q Consensus 607 ~~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l 686 (712)
++.++.+++.+++.+|++|+++.|+..|+.+|.+.++++||+.++.+|..|+++.|.+.|.+|+.+||.++.++++|.+|
T Consensus 104 ~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp EEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred CcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHH
Q 005144 687 IQRIIPEIH 695 (712)
Q Consensus 687 ~~~~~~~l~ 695 (712)
+.+.+.+++
T Consensus 184 ~~~~l~~lL 192 (279)
T 3i3n_A 184 PFHLIRDWL 192 (279)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 776554443
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.8e-24 Score=213.29 Aligned_cols=240 Identities=33% Similarity=0.417 Sum_probs=221.4
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
.++.+++.|.+. +++++..|+++|.+++.+ ++.+..+.+.|+++.|+++|.+++. +++..|
T Consensus 3 ~i~~L~~~L~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------------~v~~~a 64 (252)
T 4hxt_A 3 DVEKLVKLLTST------DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS------------EVQKEA 64 (252)
T ss_dssp HHHHHHHHTTCS------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred cHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH------------HHHHHH
Confidence 467777777765 577899999999999985 6799999999999999999998776 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHh
Q 005144 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (712)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (712)
+++|++++ .+++.+..+.+.|+++.|+.+|.+.+. +++..++++|.+++..++..+..+...|+++.|+++
T Consensus 65 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 65 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--------EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 569999999999999999999997655 999999999999998788888899999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005144 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (712)
Q Consensus 216 L~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (712)
+.++++.++..++++|++|+.+++.....+.+.|+++.|+.++.++++.++..++++|++++..++..+..+.+.|+++.
T Consensus 137 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~ 216 (252)
T 4hxt_A 137 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEV 216 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 99999999999999999999877888888999999999999999999999999999999999988888999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcCCc
Q 005144 296 VIGLLSSCCSESQREAALLLGQFAATDS 323 (712)
Q Consensus 296 L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (712)
|+.++.++++++++.++++|+|++...+
T Consensus 217 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 217 LQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999997543
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=8.7e-25 Score=215.56 Aligned_cols=238 Identities=24% Similarity=0.352 Sum_probs=220.0
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
...+.+...|++++. +++..|+++|.++. ..++.+..+.+.|+++.|+.+|.+.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 457889999999888 89999999998877 677788889999999999999988765 999
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 262 (712)
..++++|.+++.+++..+..+...|+++.|+.+|.++++.++..|+++|++|+.+.+.....+.+.|+++.|+.++++++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999888889999999999999999999999999999999999999754444488889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.++..++++|++++..+++....+.+.|+++.|+.++.++++.++..++++|++++.+++..+..+.+.|+++.|+.++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999998888888899999999999999999999999999999999987888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 005144 343 QSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~ 361 (712)
.+.++.+++.|+++|.|++
T Consensus 232 ~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=4.5e-24 Score=210.47 Aligned_cols=234 Identities=25% Similarity=0.349 Sum_probs=215.8
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
...+.+...|.+.+. +++..++++|.++...++..+..+.+.|+++.|+.+|.++++.++..|+++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998877 899999999987766566777788999999999999999999999999999999998
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 005144 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (712)
++++.+..+.+.|+++.|+.+++++++.++..|+++|++++...+.....+.+.|+++.|+.+|.++++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999886665588899999999999999999999999999999
Q ss_pred HHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHHhcCChHHHHHhhccCChhHHHHHH
Q 005144 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAA 390 (712)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (712)
+++.+++.....+.+.|+++.|+.++.++++.++..++++|++++. ..+.+.|+++.|++++.+.++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 9998777888888999999999999999999999999999999985 5778899999999999999999999999
Q ss_pred HHHHhccc
Q 005144 391 FALYGLAD 398 (712)
Q Consensus 391 ~~L~~l~~ 398 (712)
++|.||+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999985
No 34
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.91 E-value=2.2e-24 Score=218.62 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=130.9
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.++|+|+....|.++++++++|+.+|+|+|||++.++.+++
T Consensus 166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCch
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 682 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~ 682 (712)
.+++.+|++|+++.|+..|+.+|.+.++.+||..++.+|..|++..|++.|++||.+||.+++.+++
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.9e-22 Score=214.02 Aligned_cols=409 Identities=14% Similarity=0.111 Sum_probs=310.5
Q ss_pred HHHHHHHHHHhhc-ChhhHHH-HHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 005144 80 AKRATHVLAELAK-NEEVVNW-IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (712)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~-~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (712)
...++.++..+-- .|+.... +...|..+.+.+.+.+... ..+...+++.|...|.+..+|..+. .+
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I~-~~ 296 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYIT-EN 296 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHHH-Hh
Confidence 4556666665544 4555444 4567888999988865443 1566777777777778888888874 56
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~ 237 (712)
+++.|..++++ . +++..|+-+|..+..........+. ...+.+.+++.+++.+-+..|++.|.+++.
T Consensus 297 ~~~~L~~~l~~--~--------~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl- 363 (778)
T 3opb_A 297 YLQLLERSLNV--E--------DVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL- 363 (778)
T ss_dssp HHHHHHHHTTS--G--------GGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcc--H--------HHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-
Confidence 77999988864 2 7778888888888754332222221 256778888888776679999999999996
Q ss_pred ChhcHHHHHh-CCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh---------------------------------
Q 005144 238 NDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------- 282 (712)
Q Consensus 238 ~~~~~~~~~~-~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~--------------------------------- 282 (712)
+++.++.+.+ .++++.|+.+++. .+..+...++.+|.|++...+.
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 6666777665 5669999999995 6788999999999999974331
Q ss_pred -----HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHH---HHHHHH
Q 005144 283 -----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSA 354 (712)
Q Consensus 283 -----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~---v~~~a~ 354 (712)
++..+.+.|+++.|+.++.+.++.+++.++++|.|++. +++++..+++.|+++.|+.++.+.... ++..|+
T Consensus 444 ~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 35566789999999999999999999999999999985 689999999999999999999876544 899999
Q ss_pred HHHHHHHH---HHHH-h----cCChHHHHHhhcc-CCh-------------hHHHHHHHHHHhcccCcc-----hhHHHH
Q 005144 355 FALGRLAQ---AGIA-H----NGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNED-----NVADFI 407 (712)
Q Consensus 355 ~~L~~l~~---~~~~-~----~~~i~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~-----~~~~l~ 407 (712)
.+|.+++. .... . .+++++|+++|.. +.. .-+..|+.+|.||+..++ .+..++
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 99999997 2221 1 3789999999973 221 127799999999998763 367788
Q ss_pred hh-Cccccccccchhh-hhhhhHHHHHHHHHHHhhh--------------hhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 408 RV-GGVQKLQDGEFIV-QATKDCVAKTLKRLEEKIH--------------GRVLNHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 408 ~~-~~i~~L~~~~~~~-~~~~~~~~~~l~~l~~~~~--------------~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
+. |+++.|....+.. ...+......+.++..... .+.++.|+.++...+..+|.+|+++|++++
T Consensus 603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 84 8888888766632 2344445555555542211 112778999999999999999999999996
Q ss_pred C-CCcccchhhcc-CchHHHHHHhcC--CCchhhhhhHHHHHhhhcc
Q 005144 472 S-PDDQRTIFIDG-GGLELLLGLLGS--TNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 472 ~-~~~~~~~l~~~-~~~~~L~~ll~~--~~~~~~~~a~~~L~~L~~~ 514 (712)
. .+.....+.+. +|++.+++++.+ ++++++..++.++.||+..
T Consensus 683 s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 683 TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 5 44555556665 899999999999 8999999999999999974
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=193.38 Aligned_cols=129 Identities=36% Similarity=0.558 Sum_probs=99.0
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..+++++.++|+++.++|+.|+|||.||+++|+||++||.++|+|+....|.++++++++|+.+++|+|+|++.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 96 (145)
T 4eoz_A 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 96 (145)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence 45788999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHH
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH 664 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~ 664 (712)
.+++.+|++|+++.|+..|+.+|.+.++.+||+.++.+|..|+++.|++
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999999999999998864
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1e-21 Score=187.62 Aligned_cols=200 Identities=28% Similarity=0.381 Sum_probs=185.6
Q ss_pred HhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchh
Q 005144 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (712)
Q Consensus 101 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (712)
...|..+.|..+|++++. +++..|+++|++++ .+++.+..+.+.|+++.|+.+|.+.+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~------------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-------- 68 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQ------------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-------- 68 (210)
T ss_dssp ----CHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------
T ss_pred cccchhHHHHHHhcCCCH------------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--------
Confidence 346789999999998877 99999999999999 889999999999999999999988765
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc
Q 005144 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (712)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~ 259 (712)
+++..++++|.+++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.+++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 148 (210)
T 4db6_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence 99999999999999878888889999999999999999999999999999999999878888888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 005144 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (712)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (712)
++++.++..|+++|++++..++..+..+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus 149 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 149 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888889999999999999999999999999999999999974
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-21 Score=210.98 Aligned_cols=379 Identities=12% Similarity=0.097 Sum_probs=281.6
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhH-HHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
...++.|.+.+++ .+++..|+-+|+.+...+... ..+ ....+.+.+.|..+.. +-+..|++
T Consensus 295 ~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~------------~~~~~AvE 356 (778)
T 3opb_A 295 ENYLQLLERSLNV----EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIV------------PKVEMSVE 356 (778)
T ss_dssp HHHHHHHHHHTTS----GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCH------------HHHHHHHH
T ss_pred HhHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCc------------cHHHHHHH
Confidence 4445555555443 246777788887776532110 011 1144566666666544 45899999
Q ss_pred HHHHhcCChhhHHHHHhC-CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc-------------------
Q 005144 139 ALGLLAVKPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS------------------- 198 (712)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~------------------- 198 (712)
.|..++.+++.+..+... +++..|+.+++...+. .+...++.+|.|++...+.
T Consensus 357 gLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~-------s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~ 429 (778)
T 3opb_A 357 ALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMT-------HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX 429 (778)
T ss_dssp HHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCT-------THHHHHHHHHHHTTCCCCCCCCCCC-------------
T ss_pred HHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCc-------hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccC
Confidence 999999889999888865 5599999999863222 7888899999999963321
Q ss_pred -------------------chhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc
Q 005144 199 -------------------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (712)
Q Consensus 199 -------------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~ 259 (712)
++..+.+.|++|.|+.++.++++.++..++++|.+|+. ++.++..+++.|+++.|+.++.
T Consensus 430 p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~ 508 (778)
T 3opb_A 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLA 508 (778)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTT
T ss_pred cccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHh
Confidence 24456778999999999999999999999999999995 7999999999999999999998
Q ss_pred CCCHH---HHHHHHHHHHHhhcC-ChhHHHHHH--H-cCChHHHHHhhcc-CCh-------------hhHHHHHHHHHHH
Q 005144 260 SEDSA---IHYEAVGVIGNLVHS-SPNIKKEVL--A-AGALQPVIGLLSS-CCS-------------ESQREAALLLGQF 318 (712)
Q Consensus 260 ~~~~~---v~~~a~~~L~~L~~~-~~~~~~~~~--~-~~~l~~L~~lL~~-~~~-------------~v~~~a~~~L~~l 318 (712)
+.... ++..|+.+|.+++.. ++.. .+- . .|+++.|+.+|.. ... --+.+|+.+|.|+
T Consensus 509 s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNL 586 (778)
T 3opb_A 509 NKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL 586 (778)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHH
Confidence 87544 899999999999854 3332 111 1 3889999999983 211 1277999999999
Q ss_pred hcCCc----chhhhhhhc-CChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HH----HHhcC------ChHHHHHhhccC
Q 005144 319 AATDS----DCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AG----IAHNG------GLVPLLKLLDSK 381 (712)
Q Consensus 319 ~~~~~----~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~----~~~~~------~i~~L~~ll~~~ 381 (712)
+..+. +.+..+++. |+++.|..+|.+.+..++++|+++++||+. .. +.+.+ .++.|+.++.+.
T Consensus 587 As~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~ 666 (778)
T 3opb_A 587 ASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS 666 (778)
T ss_dssp HHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS
T ss_pred hcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC
Confidence 98652 346777875 999999999999999999999999999998 22 22111 377899999999
Q ss_pred ChhHHHHHHHHHHhcc-cCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhh--hhhh
Q 005144 382 NGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKG 458 (712)
Q Consensus 382 ~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~--~~~~ 458 (712)
+..+|..|+++|.|++ .++.....+++. .++++.++.++.+ .+++
T Consensus 667 D~~~r~AAagALAnLts~~~~ia~~ll~~--------------------------------~~gi~~Ll~lL~~~~~~~~ 714 (778)
T 3opb_A 667 DVESQRAVAAIFANIATTIPLIAKELLTK--------------------------------KELIENAIQVFADQIDDIE 714 (778)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHTTC--------------------------------HHHHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHc--------------------------------cccHHHHHHHHhccCCCHH
Confidence 9999999999999995 566666666653 2356778899999 8999
Q ss_pred HHHHHHHHHHHhcC----CCc---ccchhhccCchHHHHHHhcCCCc
Q 005144 459 VQRRVALALAHLCS----PDD---QRTIFIDGGGLELLLGLLGSTNP 498 (712)
Q Consensus 459 v~~~a~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~ll~~~~~ 498 (712)
++..++.++.|++. +.+ ........+....|.+++.+++.
T Consensus 715 l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 715 LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 99999999999985 221 12222233456777888876443
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1e-21 Score=187.64 Aligned_cols=199 Identities=24% Similarity=0.337 Sum_probs=185.7
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
..+..+.|..+|.+.+. +++..++++|.+++..++..+..+.+.|+++.|+++|.++++.++..|+++|+++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788999999988766 9999999999999987888888999999999999999999999999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
+.+++..+..+.+.|+++.|+.+++++++.++..|+++|++++..+++....+.+.|+++.|+.++.+++..++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788899999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005144 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (712)
|.|++..++..+..+.+.|+++.|++++.+.++.+++.|+++|.+++
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99999877888889999999999999999999999999999999875
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=4.8e-21 Score=189.75 Aligned_cols=211 Identities=22% Similarity=0.243 Sum_probs=184.3
Q ss_pred HHHHHHhhhhhhcccccc------hHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHh-hhcCCCCCccccCCCc
Q 005144 55 LLSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKP 127 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~~~~~ 127 (712)
....++..+.+|.+.... .+.+.+.+..|+..|.+++.+.++...+.+.|++|.|+. +|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------- 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------- 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH---------
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH---------
Confidence 344456666666654211 134567899999999999999889999999999999999 9998776
Q ss_pred ccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhc
Q 005144 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (712)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (712)
++|..|+|+|++++ +++.++..+++.|++++|+.+|++..+. ++++.|+|+|++++.+++.....+...
T Consensus 97 ---~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 97 ---GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 99999999999999 8899999999999999999999864321 899999999999998788777788889
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
|+++.|+.+|.+++..++..|+|+|.+|+.++++.+..+.+.|+++.|+.+|.++++.++..++++|++|+...+...
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 999999999999999999999999999998888899999999999999999999999999999999999998755443
No 41
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=166.60 Aligned_cols=104 Identities=29% Similarity=0.551 Sum_probs=93.9
Q ss_pred hhcCCCcccEEEEecC----ccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh
Q 005144 538 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 613 (712)
Q Consensus 538 ~~~~~~~~D~~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 613 (712)
+++++.++|+++.+++ +.|+|||.||+++|+||++||.++|+|+. ..|.++++++++|+.+++|+|||++.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5788999999999988 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 005144 614 IAQDLLRAADQYLLEGLKRLCEYTIAQDI 642 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~~l~~~c~~~l~~~~ 642 (712)
++.+++.+|++|+++.|+..|+.+|.+.+
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998753
No 42
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.85 E-value=1.8e-21 Score=166.47 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=94.8
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..+++++.++|+++.++|+.|+|||.||+++|+||++||.++|+|+....|.++++++++|+.+++|+|||++.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHH
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTI 638 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l 638 (712)
.+++.+|++|+++.|+..|+++|
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999986
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=3.9e-20 Score=183.22 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
+-+..|+..|.+++.+.++...+...|+++.|+. +|.+++. +++..|+|+|++++.+++..+..+++.|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 6788999999999988889999999999999999 9987765 999999999999999889999999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 210 ~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
|.|+.+|.+ ++..++..|+|+|.+++.+++.....+.+.|+++.|+.+++++++.++..|+|+|++++.++++.+..++
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999986 4789999999999999988888888899999999999999999999999999999999998888999999
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcc
Q 005144 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324 (712)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 324 (712)
+.|+++.|+.+|.+.+..+++.++.+|++++.+.+.
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999999999976433
No 44
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.84 E-value=5.1e-21 Score=165.38 Aligned_cols=104 Identities=23% Similarity=0.424 Sum_probs=99.7
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCCCCCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~~ 614 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++|+| ....|.+ +++++++|+.+++|+|||++.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH
Confidence 457889999999999999999999999999999999999999999 7789999 89999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHh
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYTIAQ 640 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~l~~ 640 (712)
+.+++.+|++|+++.|+..|+.+|.+
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 45
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.83 E-value=4.6e-21 Score=167.95 Aligned_cols=109 Identities=25% Similarity=0.386 Sum_probs=102.4
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCCCCCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 614 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++|+|. ..|.++ ++++++|+.+|+|+|||++.++.++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence 4577899999999999999999999999999999999999998874 478885 8999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCChhh
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 646 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~ 646 (712)
+.+++.+|++|+++.|+..|+.+|.+.++.+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999988776
No 46
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.83 E-value=6.4e-21 Score=167.78 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=93.5
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCCCCCChh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 613 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 613 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++|++ +....|.++++++++|+.+|+|+|||++.++.+
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 447789999999999999999999999999999999999998876 667799999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHH
Q 005144 614 IAQDLLRAADQYLLEGLKRLCEYTI 638 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~~l~~~c~~~l 638 (712)
++.+++.+|++|+++.|++.|+++|
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999875
No 47
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=170.92 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=172.2
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
.+|.|+++|.+++. +.+++..|+++|.+++ .+++++..+.+.|+++.|+.+|.+.+. ++++
T Consensus 9 ~i~~lV~lL~s~~~----------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~ 70 (233)
T 3tt9_A 9 TLERAVSMLEADHM----------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQR 70 (233)
T ss_dssp CHHHHHHTCCSSCC----------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHH
T ss_pred cHHHHHHHhCCCCc----------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999988765 2368889999999999 889999999999999999999988765 9999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc---
Q 005144 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (712)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~--- 259 (712)
.|+|+|.|++.++++++..+.+.|++|.|+++|. +++.++++.|+.+|+||+. .+.++..+.+. +++.|+.++.
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPF 148 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccc
Confidence 9999999999888899999999999999999998 5789999999999999996 67778887764 6899988652
Q ss_pred -------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhhccC------ChhhHHHHHHHHHHHh
Q 005144 260 -------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSC------CSESQREAALLLGQFA 319 (712)
Q Consensus 260 -------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~ 319 (712)
..+++++.+|..+|.||+..+++.++.+.+. |+++.|+.+++.+ +...++.++.+|.||+
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 1367999999999999998888899999986 5679999999752 5678999999999998
Q ss_pred c
Q 005144 320 A 320 (712)
Q Consensus 320 ~ 320 (712)
.
T Consensus 229 ~ 229 (233)
T 3tt9_A 229 Y 229 (233)
T ss_dssp C
T ss_pred h
Confidence 5
No 48
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.82 E-value=7e-21 Score=162.01 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=94.1
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+++|+|||++.++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 4477889999999999999999999999999999999999876 458999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHh
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQ 640 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~ 640 (712)
.+++.+|++|+++.|++.|+.+|.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 49
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.82 E-value=3e-20 Score=158.73 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=95.4
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++ .+.|.++++++++|+.+++|+|||++.++.+++
T Consensus 20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~ 94 (121)
T 1buo_A 20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL 94 (121)
T ss_dssp HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHH
Confidence 457888999999999999999999999999999999999874 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcC
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDI 642 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~ 642 (712)
.+++.+|++|+++.|++.|+.+|.+.|
T Consensus 95 ~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 95 DDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998643
No 50
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=1.2e-20 Score=164.37 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=92.6
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..+++++.++||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v 92 (135)
T 2yy9_A 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 92 (135)
T ss_dssp HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4578899999999999999999999999999999999999887 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcCCh
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIAQDISL 644 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~~~~~~ 644 (712)
.+++.+|++|+++.|++.|+.+|.+.+..
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887653
No 51
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=157.04 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=93.2
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecC--CCCHHHHHHHHHHHhcCCCCCChh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTLD 613 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~~~~~ 613 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++ ..+.|.++ ++++++|+.+++|+|||++.++.+
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence 447788999999999999999999999999999999999887 24567777 999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHH
Q 005144 614 IAQDLLRAADQYLLEGLKRLCEYTIA 639 (712)
Q Consensus 614 ~~~~l~~~A~~~~~~~l~~~c~~~l~ 639 (712)
++.+++.+|++|+++.|+..|+++|.
T Consensus 90 ~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999885
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=168.78 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=167.8
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 207 GGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
-.+|.++++|.++++ .++..|+++|.+++.+++.++..+.+.|+++.|+.+|++++++++..|+++|.||+..+++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 367999999999987 899999999999998888999999999999999999999999999999999999998889999
Q ss_pred HHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC----------------CCCH
Q 005144 285 KEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDV 347 (712)
Q Consensus 285 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~ 347 (712)
..+.+.|+++.|+.+|. +++.++++.++.+|+||+. .+.++..+.+ ++++.|++++. ..++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 4689999999999999986 4567777776 46888888652 1377
Q ss_pred HHHHHHHHHHHHHHH------HHHHhc-CChHHHHHhhcc------CChhHHHHHHHHHHhcccC
Q 005144 348 QLREMSAFALGRLAQ------AGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~------~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 399 (712)
.++++|.++|.||+. +.+.+. |+++.|+.+++. .+...+++|+.+|+||+-.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999986 667766 557999999954 2568999999999999853
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.79 E-value=6.8e-20 Score=155.89 Aligned_cols=99 Identities=22% Similarity=0.359 Sum_probs=92.5
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhH
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 615 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 615 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++.++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 446788999999999999999999999999999999999863 347889999999999999999999999999999
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHH
Q 005144 616 QDLLRAADQYLLEGLKRLCEYTIA 639 (712)
Q Consensus 616 ~~l~~~A~~~~~~~l~~~c~~~l~ 639 (712)
.+++.+|++|+++.|++.|+++|.
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 54
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=1.6e-20 Score=161.76 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=94.3
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCC-CCHHHHHHHHHHHhcCCCCCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Y~~~~~~~~~~ 614 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++++| ...|.+++ +++++|+.+++|+|||++.++.++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence 457889999999999999999999999999999999999999887 56899998 999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHH
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYT 637 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~ 637 (712)
+.+++.+|++|+++.|++.|+++
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHh
Confidence 99999999999999999999765
No 55
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=2.5e-20 Score=159.93 Aligned_cols=102 Identities=25% Similarity=0.423 Sum_probs=92.2
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCCCCCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 614 (712)
..++.++.++||++.++|+.|+|||.||+++|+||++||.++|+|+ ..|.++ ++++++|+.+++|+|||++.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence 4578889999999999999999999999999999999999998775 478885 8999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHH
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYTIA 639 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~l~ 639 (712)
+.+++.+|++|+++.|+..|+.+|.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 56
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.1e-20 Score=158.84 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=89.0
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCCCCCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 614 (712)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||++.++.++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence 446789999999999999999999999999999999999876 55689997 8999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhc
Q 005144 615 AQDLLRAADQYLLEGLKRLCEYTIAQD 641 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~~c~~~l~~~ 641 (712)
+.+++.+|++|+++.|++.|+++|.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 57
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.77 E-value=2.7e-19 Score=151.22 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=86.5
Q ss_pred hhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhhHHH
Q 005144 538 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 617 (712)
Q Consensus 538 ~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 617 (712)
.+.++.++||++.++|+.|+|||.||+++|+||+. ....|.++++++++|+.+++|+|||++.++.+++.+
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 35678999999999999999999999999999973 345799999999999999999999999999999999
Q ss_pred HHHHHHHhChHhHHHHHHHHHHh
Q 005144 618 LLRAADQYLLEGLKRLCEYTIAQ 640 (712)
Q Consensus 618 l~~~A~~~~~~~l~~~c~~~l~~ 640 (712)
++.+|++|+++.|++.|++++.+
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998765
No 58
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.75 E-value=2.7e-18 Score=144.87 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=86.2
Q ss_pred HhhhcCCCcccEEEEecCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCC-CCChhh
Q 005144 536 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLDI 614 (712)
Q Consensus 536 ~~~~~~~~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-~~~~~~ 614 (712)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++ .++.++
T Consensus 23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 447788999999999999999999999999999999999875 45899999999999999999999999 799999
Q ss_pred HHHHHHHHHHhChHhHHH
Q 005144 615 AQDLLRAADQYLLEGLKR 632 (712)
Q Consensus 615 ~~~l~~~A~~~~~~~l~~ 632 (712)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999875
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.74 E-value=1.5e-16 Score=177.20 Aligned_cols=400 Identities=14% Similarity=0.084 Sum_probs=281.1
Q ss_pred HhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C-ChhhHHH
Q 005144 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQL 152 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~~~~~~ 152 (712)
.++.++..|+.+|+.++..-... ......+|.+..++.+++. .+|..|+.+|+.++ . .++.
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~------------~vr~~a~~~l~~l~~~~~~~~--- 238 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD------------SVRLLAVEACVNIAQLLPQED--- 238 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH------------HHHTTHHHHHHHHHHHSCHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHhCCHHH---
Confidence 37778999999999988731111 1235678889998877665 89999999999998 2 3221
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
.....++.+..++.+.+ +.++..++.+|..++..... .......++.+..++.++++.++..++.+|.
T Consensus 239 -~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 239 -LEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp -HHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 12235677777775543 38999999999999863221 1223467899999999999999999999999
Q ss_pred HhhcCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHH
Q 005144 233 TLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (712)
Q Consensus 233 ~L~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (712)
.++...+.. ........+++.+..+++++++.+|..++++|+.++..-.. ......+++.+..++.+.++++|..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 998633221 11122235788899999999999999999999999743111 11224478899999999899999999
Q ss_pred HHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHH
Q 005144 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHN 388 (712)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~ 388 (712)
+.++..+....... .....++|.+..++.+.+..+|..++.++..++. ........++.+..++.+.++.+|..
T Consensus 384 ~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp HTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998887532211 1224567889999999999999999999999987 22222345677888889999999999
Q ss_pred HHHHHHhcccCcchhHHHHhhCccccccccchhh-hhhhhHHHHHHHHHHH-----hhhhhhHHHHHHHHhhhhhhHHHH
Q 005144 389 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKRLEE-----KIHGRVLNHLLYLMRVAEKGVQRR 462 (712)
Q Consensus 389 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~-~~~~~~~~~~l~~l~~-----~~~~~~~~~Lv~ll~~~~~~v~~~ 462 (712)
|+.++..++..-... +.....++.+....... ...+......+..+.. .+...+++.++.++.+.+++||..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 999999997542221 11122333332211110 1112223333333322 234568889999999999999999
Q ss_pred HHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 463 VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 463 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
++.+|+.+...-... +.....+|.|..++.++++++|..|..++..+..
T Consensus 539 a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 539 VAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 999999997643321 2234567888888899999999999999988753
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=5.2e-16 Score=172.90 Aligned_cols=374 Identities=15% Similarity=0.092 Sum_probs=264.9
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
++|.+..++.++++ .||..|+.+|+.++ ..+.. ......++.+..++.+.+. .++.
T Consensus 165 l~~~l~~l~~d~~~------------~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~--------~vr~ 221 (588)
T 1b3u_A 165 LRQYFRNLCSDDTP------------MVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQD--------SVRL 221 (588)
T ss_dssp HHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCH--------HHHT
T ss_pred HHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcH--------HHHH
Confidence 46777777776655 99999999999998 22211 1234567888888876554 8999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 005144 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (712)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 263 (712)
.++.+|..++...+.. .....++|.+..++.++++.+|..++.+|..++...+. . .....+++.+..+++++++
T Consensus 222 ~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp THHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHhCCCcH
Confidence 9999999998644321 22345788899999999999999999999999852111 1 1233578999999999999
Q ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 264 AIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
.+|..++.+|+.++..... .........+++.+..++.+.++.+|..++++|..++..-.. ......++|.+..++
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l 372 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQL 372 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHh
Confidence 9999999999999864322 111123355788899999999999999999999998742211 112235779999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccc
Q 005144 343 QSPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 419 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~ 419 (712)
++.++.+|..++.++..+.. ........++.+..++.+.++.++..++.+|..++..-... +.....++.+....
T Consensus 373 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l 450 (588)
T 1b3u_A 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWL 450 (588)
T ss_dssp TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGG
T ss_pred CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHh
Confidence 99999999999999998887 22233456788888888999999999999999987521110 00011122222221
Q ss_pred hh-hhhhhhHHHHHHHHHHHhh-----hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHh
Q 005144 420 FI-VQATKDCVAKTLKRLEEKI-----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 493 (712)
Q Consensus 420 ~~-~~~~~~~~~~~l~~l~~~~-----~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll 493 (712)
.+ ....++.....+..+.... ...+++.+..++.+.+..+|..++.+++.++..-... ......++.|.+++
T Consensus 451 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l 528 (588)
T 1b3u_A 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMA 528 (588)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGG
T ss_pred cCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhC
Confidence 11 1123333444444443322 3467788888878888999999999999986532211 12346789999999
Q ss_pred cCCCchhhhhhHHHHHhhhcc
Q 005144 494 GSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 494 ~~~~~~~~~~a~~~L~~L~~~ 514 (712)
.++++.+|..+++++..+...
T Consensus 529 ~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 529 GDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp GCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 61
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=7.4e-15 Score=155.00 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=252.7
Q ss_pred HHHHHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHH
Q 005144 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (712)
Q Consensus 52 ~~~~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (712)
.+.....|+.+++.+.+.. -.+.|+.|+..|..+++. ++..+ ..++++.|+..|+.+.. |.+
T Consensus 16 ~qs~~etI~~L~~Rl~~~t-----l~eDRR~Av~~Lk~~sk~--y~~~V-g~~~l~~li~~L~~d~~----------D~e 77 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASST-----LLDDRRNAVRALKSLSKK--YRLEV-GIQAMEHLIHVLQTDRS----------DSE 77 (651)
T ss_dssp --CHHHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHTTTT--TTTHH-HHHTHHHHHHHHHSCTT----------CHH
T ss_pred CCChhhHHHHHHHHHhhcc-----chhHHHHHHHHHHHHHHH--hHHHh-hhhhHHHHHHHHhcccc----------cHH
Confidence 3456778899999998863 445689999999999874 33333 36679999999998765 448
Q ss_pred HHHHHHHHHHHhc-CChh-----------------hHHHH-HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHH
Q 005144 132 VEKGSAFALGLLA-VKPE-----------------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (712)
Q Consensus 132 v~~~a~~~L~~l~-~~~~-----------------~~~~~-~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l 192 (712)
+...++.+|.++. .+++ +.+.+ .+.+.++.|+.+|+..+. .++.+++.+|..+
T Consensus 78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L 149 (651)
T 3grl_A 78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSL 149 (651)
T ss_dssp HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHH
Confidence 8889999998876 3221 23333 356889999999987665 9999999999999
Q ss_pred hhcCCc-chhHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCC----HHHH
Q 005144 193 AHENSS-IKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIH 266 (712)
Q Consensus 193 ~~~~~~-~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~ 266 (712)
+...+. .++.+. ..++++.|+.+|.++.+.+|..++..|.+|+.++.+.++.+.-.|+++.|+.+++.+. ..+.
T Consensus 150 ~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv 229 (651)
T 3grl_A 150 LKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVV 229 (651)
T ss_dssp HHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHH
T ss_pred HhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhH
Confidence 987776 677676 4599999999999999999999999999999999888888998999999999998754 4789
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCCh------hhHHH---HHHHHHHHhcCC------cchhhhhhh
Q 005144 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS------ESQRE---AALLLGQFAATD------SDCKVHIVQ 331 (712)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~v~~~---a~~~L~~l~~~~------~~~~~~l~~ 331 (712)
..++.+|.||...|+.++..+.+.|+++.|..+|..+.. ....+ +..++.-+...+ ..++..+.+
T Consensus 230 ~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999975422 12222 344555555432 245677889
Q ss_pred cCChHHHHHHhCCC--CHHHHHHHHHHHHHHHH------HHHHhcC-----ChHH----HHHhhcc-CChhHHHHHHHHH
Q 005144 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQ------AGIAHNG-----GLVP----LLKLLDS-KNGSLQHNAAFAL 393 (712)
Q Consensus 332 ~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~------~~~~~~~-----~i~~----L~~ll~~-~~~~v~~~a~~~L 393 (712)
.|+++.|++++... ...++..|..+++.+.. ..+.... ..+. |+.++++ ....+|..|+.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999999664 67899999999999887 3333322 2233 3444544 4578899999999
Q ss_pred Hhccc-CcchhHHHHh
Q 005144 394 YGLAD-NEDNVADFIR 408 (712)
Q Consensus 394 ~~l~~-~~~~~~~l~~ 408 (712)
..+.. |++....+..
T Consensus 390 ~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 390 QCFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 88855 4555444544
No 62
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=1.8e-15 Score=175.79 Aligned_cols=376 Identities=14% Similarity=0.105 Sum_probs=264.1
Q ss_pred HhHHHHHHHHHHHHHhhcC------hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CCh
Q 005144 75 ADRAAAKRATHVLAELAKN------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~------~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (712)
.+..+|..|+-.|.+.... ++.+.. +-+.+++.|.+++. .+|..++.+++.++ ..+
T Consensus 60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~-----ik~~ll~~l~~~~~------------~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLNNIGDSSP------------LIRATVGILITTIASKGE 122 (852)
T ss_dssp SCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH-----HHHHHHTTTTCSSH------------HHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHccCCCCHHHHHH-----HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcC
Confidence 4667888899999988752 233332 34667777776554 89999999999998 321
Q ss_pred hhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHH----HhcCChHHHHHhhcCCCHHH
Q 005144 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV----RMEGGIPPLVELLEFTDTKV 223 (712)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~i~~L~~lL~~~~~~v 223 (712)
.. .-.+.++.|+..+.+.+. .++..++.+|..++...+..-..- .....++.+++++.++++.+
T Consensus 123 ~~----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 190 (852)
T 4fdd_A 123 LQ----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190 (852)
T ss_dssp TT----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHH
T ss_pred cc----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHH
Confidence 11 124568888888877654 889999999999997544321100 01235677888888899999
Q ss_pred HHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC
Q 005144 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (712)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (712)
|..|+++|.++....+....... .+.++.+..++.++++.+|..++++|..++...++...... .++++.++..+.+.
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ 268 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC
Confidence 99999999988753322111111 24678888889999999999999999999876654322222 24778888888888
Q ss_pred ChhhHHHHHHHHHHHhcCCcchhhhhh--hcCChHHHHHHh-----------CC-----------CCHHHHHHHHHHHHH
Q 005144 304 CSESQREAALLLGQFAATDSDCKVHIV--QRGAVRPLIEML-----------QS-----------PDVQLREMSAFALGR 359 (712)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~--~~~~l~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~ 359 (712)
++.++..++..+..++... ..+..+. -..++|.++..+ .+ .+..+|..+..+|..
T Consensus 269 ~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 9999999999999988532 2222111 124566776666 22 223468899999999
Q ss_pred HHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHH
Q 005144 360 LAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 437 (712)
Q Consensus 360 l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~ 437 (712)
++. ....-...++.+.+++.+.++.+|..|+++|++++..... .+ .
T Consensus 348 la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~-~----------------------------- 395 (852)
T 4fdd_A 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GM-I----------------------------- 395 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HH-G-----------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HH-H-----------------------------
Confidence 988 1111123456677777888999999999999999865432 11 0
Q ss_pred HhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 438 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 438 ~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
..-..+++.++.++.+.++.|+..|++++++++.... ......-.+.++.|++.+.++++.+|..|+++|.++....
T Consensus 396 -~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 396 -PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp -GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 0123467889999999999999999999999976322 1111123466789999999999999999999999999764
No 63
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.64 E-value=6.8e-14 Score=147.69 Aligned_cols=367 Identities=16% Similarity=0.158 Sum_probs=262.3
Q ss_pred CHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
.|+.|+.-+.+.... +-|+.|+..|..++.. ++.. +..++++.|+..|+.... +.++...
T Consensus 22 tI~~L~~Rl~~~tl~-----------eDRR~Av~~Lk~~sk~--y~~~-Vg~~~l~~li~~L~~d~~------D~e~v~~ 81 (651)
T 3grl_A 22 TIQKLCDRVASSTLL-----------DDRRNAVRALKSLSKK--YRLE-VGIQAMEHLIHVLQTDRS------DSEIIGY 81 (651)
T ss_dssp HHHHHHHHHHHCCSH-----------HHHHHHHHHHHHTTTT--TTTH-HHHHTHHHHHHHHHSCTT------CHHHHHH
T ss_pred HHHHHHHHHhhccch-----------hHHHHHHHHHHHHHHH--hHHH-hhhhhHHHHHHHHhcccc------cHHHHHH
Confidence 366777777665542 7899999999999832 2222 445689999999987644 2388999
Q ss_pred HHHHHHHHhhcCCcc-----------------h-hHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-cHHHH
Q 005144 185 AADAITNLAHENSSI-----------------K-TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQI 245 (712)
Q Consensus 185 a~~~L~~l~~~~~~~-----------------~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~ 245 (712)
++.+|.++...++.. . ..+.+.+.++.|+.+|.+.+..+|..++.+|..|+...+. .++.+
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999998876533321 1 1234567899999999999999999999999999987777 66667
Q ss_pred Hh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCC----hhhHHHHHHHHHHHhc
Q 005144 246 VE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAA 320 (712)
Q Consensus 246 ~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~ 320 (712)
.. .++++.|+.+|.+....+|..++..|.+|+.++++.++.+.-.|+++.|+.++.... ..+...++.++.|+..
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 64 599999999999999999999999999999999999888888999999999998653 3788899999999999
Q ss_pred CCcchhhhhhhcCChHHHHHHhCCCC------HHHHHH---HHHHHHHHHH------------HHHHhcCChHHHHHhhc
Q 005144 321 TDSDCKVHIVQRGAVRPLIEMLQSPD------VQLREM---SAFALGRLAQ------------AGIAHNGGLVPLLKLLD 379 (712)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~ll~~~~------~~v~~~---a~~~L~~l~~------------~~~~~~~~i~~L~~ll~ 379 (712)
.++.++..+.+.++++.|..+++.++ .+...+ +..++.-+.. ..+.+.|++..|++++.
T Consensus 242 ~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 242 NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 98889999999999999999996532 222233 2222222211 56788999999999996
Q ss_pred cC--ChhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh-
Q 005144 380 SK--NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA- 455 (712)
Q Consensus 380 ~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~- 455 (712)
+. ...++..|+.++..+.+ ++.+...+.+..+ +... . ...++..|+.++.+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v-p~~~-------~----------------~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVNA-PSNP-------P----------------RPAIVVLLMSMVNERQ 377 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE-SSSS-------C----------------EEHHHHHHHHHTCTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC-CCCC-------C----------------cChHHHHHHHHhcccc
Confidence 55 57899999999999976 4555556554321 1100 0 011233344444444
Q ss_pred hhhHHHHHHHHHHHhcCCCc-ccchhhcc----------Cch---HHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 456 EKGVQRRVALALAHLCSPDD-QRTIFIDG----------GGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 456 ~~~v~~~a~~~L~~l~~~~~-~~~~l~~~----------~~~---~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
...+|.+|+.++..+..+.+ .+..+... +.+ ..|..-+-+.++----+|+.++..+-.+.
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n 451 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN 451 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC
Confidence 57889999999998876654 33222211 111 12334444556643345777777776654
No 64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.63 E-value=1.9e-14 Score=167.16 Aligned_cols=425 Identities=14% Similarity=0.107 Sum_probs=267.1
Q ss_pred hhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHH
Q 005144 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (712)
Q Consensus 61 ~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (712)
.+++.+...+++ .++.++..|+++|.++.........-.-.+.++.+..++.+++. ++|..|+++|
T Consensus 174 ~il~~l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~------------~vr~~a~~~L 239 (852)
T 4fdd_A 174 IMIPKFLQFFKH--SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP------------EVRKNVCRAL 239 (852)
T ss_dssp HHHHHHTTTTTC--SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCH------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHH
Confidence 344445555443 36778999999999887642111000012457888888877665 8999999999
Q ss_pred HHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHH--hcCChHHHHHhh-
Q 005144 141 GLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELL- 216 (712)
Q Consensus 141 ~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL- 216 (712)
.+++ ..++.-..... +.++.++..+.+.++ +++..++..+..++... ..+..+. ....+|.++..+
T Consensus 240 ~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--------~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~ 309 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--------NVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMK 309 (852)
T ss_dssp HHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--------HHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTS
T ss_pred HHHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--------HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcC
Confidence 9999 55543222111 356677777766544 89999999999998632 2222111 113455666665
Q ss_pred ----------cC-----------CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 005144 217 ----------EF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (712)
Q Consensus 217 ----------~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 275 (712)
.+ .+..++..++.+|..++...++ .+.. .+++.+...+.+++..+|..|+++|++
T Consensus 310 ~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 310 YSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp CCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22 1234788999999999853221 1221 357788888889999999999999999
Q ss_pred hhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHH
Q 005144 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (712)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 355 (712)
++.+..+.... .-.++++.++..+.+.++.+|..+++++++++...........-.++++.|+..+.++++.++..|++
T Consensus 386 i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 386 IAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp TTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 98776542221 22457899999999999999999999999998532211111122467788999999999999999999
Q ss_pred HHHHHHH---HHHH--hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcc---hhHHHHhhCcccccccc-------ch
Q 005144 356 ALGRLAQ---AGIA--HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---NVADFIRVGGVQKLQDG-------EF 420 (712)
Q Consensus 356 ~L~~l~~---~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~i~~L~~~-------~~ 420 (712)
+|.+++. ..+. -.+.++.|+.+++..+......+..++..++.... ....+.+ ..++.+.+. ..
T Consensus 465 aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~-~l~p~l~~~~~~l~d~~~ 543 (852)
T 4fdd_A 465 AFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDK 543 (852)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHH-HHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHH-HHHHHHHHHHHhcccccH
Confidence 9999998 1111 12345566667766666665566677777653211 1111111 112222110 00
Q ss_pred hhhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHhhh-----------------hhhHHHHHHHHHHHhcCCCc--ccc
Q 005144 421 IVQATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRVA-----------------EKGVQRRVALALAHLCSPDD--QRT 478 (712)
Q Consensus 421 ~~~~~~~~~~~~l~~l~~~---~~~~~~~~Lv~ll~~~-----------------~~~v~~~a~~~L~~l~~~~~--~~~ 478 (712)
.....-+|+......+... +-..+++.++.++... +.+++..++.+++.++..-+ ...
T Consensus 544 ~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~ 623 (852)
T 4fdd_A 544 DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 623 (852)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHH
Confidence 0001112222222222111 1233445455555432 45678888899998876433 233
Q ss_pred hhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 479 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 479 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.+...+.++.+..++.++++.+|..+..++..++...
T Consensus 624 ~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 624 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Confidence 3335788999999999999999999999999999654
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=5.9e-13 Score=143.32 Aligned_cols=375 Identities=12% Similarity=0.046 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCCh-hhHHH--
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP-EHQQL-- 152 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~-- 152 (712)
|...|..|-..|.++..+. ..+.+..|+.++.+.+. ++.+|..|+..|.|+.... .....
T Consensus 14 d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 14 DRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHhccccchHHHHHH
Confidence 5567888888888755420 12346677888876533 2389999999999987221 00000
Q ss_pred ---H------HhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCC--CH
Q 005144 153 ---I------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DT 221 (712)
Q Consensus 153 ---~------~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~ 221 (712)
. .....-..++..|.+.+. .+ ..++.++..++....+... -.+.++.|+..+.++ ++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~ 144 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTE 144 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCH
Confidence 0 011123446667766544 55 6788888888864321111 146788899999888 89
Q ss_pred HHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHH-HHHHcCChHHHH
Q 005144 222 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVI 297 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~ 297 (712)
.++..++.+|..++... +....... ..+++.+...+.++ ++.+|..|+++++++...-.+... .....-+++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999998632 21111111 23678888889887 799999999999997643221110 011111466667
Q ss_pred HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-----Hh-----
Q 005144 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGI-----AH----- 367 (712)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~----- 367 (712)
..+.+.+++++..++.++..++...+......+..++++.++..+++.++.++..++..+..++.... .+
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77778889999999999999986554432223322678888888888999999999999998887210 00
Q ss_pred ----------------cCChHHHHHhhcc-------CChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhh
Q 005144 368 ----------------NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 424 (712)
Q Consensus 368 ----------------~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~ 424 (712)
...++.+++.+.. .++.++..|+.+|..++..-..
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---------------------- 361 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---------------------- 361 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----------------------
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----------------------
Confidence 1123333344422 2245566666666655432110
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCccc-chhhccCchHHHHHHhcCCCchhhhh
Q 005144 425 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGGGLELLLGLLGSTNPKQQLD 503 (712)
Q Consensus 425 ~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~~~~L~~ll~~~~~~~~~~ 503 (712)
..-..+++.+...+.+.+..+|..|+.+|+.++.+.... ..-.-...++.+..++.++++.+|..
T Consensus 362 --------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 362 --------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp --------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 011235666777888889999999999999998754411 11112568899999999999999999
Q ss_pred hHHHHHhhhcccc
Q 005144 504 GAVALFKLANKAT 516 (712)
Q Consensus 504 a~~~L~~L~~~~~ 516 (712)
|+++|.+++....
T Consensus 428 a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 428 AAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=4.2e-13 Score=133.85 Aligned_cols=253 Identities=17% Similarity=0.092 Sum_probs=192.4
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
++.+++.|.+. ++.++..|++.|+++.. .+.++.|+.++.+++. .+|..|++
T Consensus 25 i~~L~~~L~~~------~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~------------~vR~~A~~ 76 (280)
T 1oyz_A 25 DDELFRLLDDH------NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNY------------IRRDIGAF 76 (280)
T ss_dssp HHHHHHHTTCS------SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSH------------HHHHHHHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCH------------HHHHHHHH
Confidence 56666666553 77789999999998763 2357889999988766 89999999
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHH-HHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc
Q 005144 139 ALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (712)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 217 (712)
+|+++...+..... .++.|.+ ++.+.+. .++..++++|.+++..++... ...++.|+.++.
T Consensus 77 aL~~l~~~~~~~~~-----l~~~L~~~~~~d~~~--------~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~ 138 (280)
T 1oyz_A 77 ILGQIKICKKCEDN-----VFNILNNMALNDKSA--------CVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAF 138 (280)
T ss_dssp HHHHSCCCTTTHHH-----HHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTT
T ss_pred HHHHhccccccchH-----HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhh
Confidence 99999843322111 2233332 2344433 899999999999986443322 245789999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005144 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (712)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 297 (712)
++++.++..++++|+++.. .+.++.|+.+++++++.+|..++++|+.+....+. .++.|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~ 198 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFV 198 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHH
Confidence 9999999999999998763 24799999999999999999999999998543332 567889
Q ss_pred HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHh
Q 005144 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKL 377 (712)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~l 377 (712)
.++.+.++.+|..++++|+++.. ...++.|+..+++++ ++..+..+|+.+.. ...++.|.++
T Consensus 199 ~~l~d~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----~~~~~~L~~~ 260 (280)
T 1oyz_A 199 EMLQDKNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----KTLLPVLDTM 260 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----GGGHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----hhhhHHHHHH
Confidence 99999999999999999999852 356789999998755 88888888887543 4678889999
Q ss_pred hc-cCChhHHHHHHHHHHh
Q 005144 378 LD-SKNGSLQHNAAFALYG 395 (712)
Q Consensus 378 l~-~~~~~v~~~a~~~L~~ 395 (712)
+. ++++.+...+...|.+
T Consensus 261 l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 261 LYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HTTSSCCHHHHHHHHHHTC
T ss_pred HhcCCCcHHHHHHHHHhhc
Confidence 85 4677888888777754
No 67
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=5.8e-13 Score=147.22 Aligned_cols=388 Identities=16% Similarity=0.123 Sum_probs=263.2
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
+...+..+.-.+..++. +++.... ++..+.+-|.++++ .+|..|+.+|+++. .++....
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~-- 121 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEY-- 121 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHH--
T ss_pred CHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHH--
Confidence 66667666667776666 4544322 35677777777666 89999999999997 3443332
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
.++.+.+++.+.++ .++..|+.++.+++..+++. +.+.++++.+..+|.++++.|+..|+.+|..+
T Consensus 122 ---l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 122 ---LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp ---HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 35678888876655 99999999999999866553 23356789999999999999999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
+..++.........+.+..|+..+.+.++..+...+.++..++..++... ..+++.+..++++.++.++.+|+++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHH
Confidence 97554331000011235667777777889999999999999875544332 2367788888999999999999999
Q ss_pred HHHHhcC---CcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHH
Q 005144 315 LGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNA 389 (712)
Q Consensus 315 L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a 389 (712)
+..+... +++....+ -.++.+.|+.++ ++++.+|..++.+|..++. ...... .+..+. .+.+.+..++..+
T Consensus 263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~-~~~~~~-~~~~d~~~Ir~~a 338 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQ-EIKVFF-VKYNDPIYVKLEK 338 (591)
T ss_dssp HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTT-CTTTTS-CCTTSCHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHH-HHHhhe-eccCChHHHHHHH
Confidence 9998642 22322222 234567777666 4789999999999999887 111111 111121 1224458899999
Q ss_pred HHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHhhhhhhHHHHHHHH
Q 005144 390 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRVALA 466 (712)
Q Consensus 390 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~Lv~ll~~~~~~v~~~a~~~ 466 (712)
+.+|.+++.. .+...++.. ..+.+.+. ....+......+..+...+ ...+++.|+.++.+.+..++..++.+
T Consensus 339 l~~L~~l~~~-~nv~~iv~~-L~~~l~~~---d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 339 LDIMIRLASQ-ANIAQVLAE-LKEYATEV---DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HHHHHHTCCS-STHHHHHHH-HHHHTTSS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCh-hhHHHHHHH-HHHHHhcC---CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 9999999854 344433321 00111110 1122233334444444333 46688999999999988888888888
Q ss_pred HHHhcCCCcccchhhccCchHHHHHHhcC-CCchhhhhhHHHHHhhhccc
Q 005144 467 LAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 467 L~~l~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.++....... ...+++.|.+.+.+ .++.++..++|++...+...
T Consensus 414 l~~ii~~~p~~----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 414 IRDIFRKYPNK----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHHHHSCSS----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHCcch----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 98886533321 35678889888874 66788999999998877653
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=7.8e-13 Score=131.88 Aligned_cols=229 Identities=15% Similarity=0.081 Sum_probs=176.9
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (712)
..+.++.|+..|.++++.++..|+++|+++.. .+.++.|+.+++++++.+|..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 45688999999999999999999999998872 235788999999999999999999999996432211
Q ss_pred HHHHHcCChHHHH-HhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005144 285 KEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQA 363 (712)
Q Consensus 285 ~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (712)
.. +++.|. .++.+.++.++..++++|+++...++.. ....++.|+.++.++++.+|..++.+|+++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 334444 2456788999999999999997543322 12457899999999999999999999988654
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 364 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 364 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
...++.|+.++.++++.++..++++|..+....+ .
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-----------------------------------------~ 192 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-----------------------------------------D 192 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----------------------------------------H
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-----------------------------------------H
Confidence 4688999999999999999999999998753211 1
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
.++.|+.++.++++.++..|+.+|+.+. ....++.|..++.++ +++..|+.+|..+..
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 4556777788888888888888888874 235678888888764 378888888877754
No 69
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=2.3e-13 Score=150.41 Aligned_cols=396 Identities=16% Similarity=0.123 Sum_probs=259.9
Q ss_pred hhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHH
Q 005144 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (712)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (712)
+..+...+.+ +|+.++..|+.+|+++. .++....+ ++.+.+++.++++ .||..|+.++.+
T Consensus 88 ~n~l~kdL~~--~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~------------~VRk~A~~al~~ 147 (591)
T 2vgl_B 88 VNSFVKDCED--PNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDP------------YVRKTAAVCVAK 147 (591)
T ss_dssp HHHHGGGSSS--SSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCCh------------HHHHHHHHHHHH
Confidence 4445555554 47788999999999886 34443333 6788999987766 999999999999
Q ss_pred hc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH
Q 005144 143 LA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (712)
Q Consensus 143 l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 221 (712)
+. .+|+.. .+.+.++.+..+|.+.+. .++..|+++|..++..++.........+.++.|+..+.+.++
T Consensus 148 i~~~~p~~~---~~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~ 216 (591)
T 2vgl_B 148 LHDINAQMV---EDQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216 (591)
T ss_dssp HHHSSCCCH---HHHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH
T ss_pred HHhhChhhc---ccccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc
Confidence 99 666542 223567889999987665 999999999999998665431111112345667777778888
Q ss_pred HHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhHHHHHHHcCChHHHHH
Q 005144 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIG 298 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~l~~L~~ 298 (712)
-.+...+.++..++..++... ..+++.+..++++.++.|+..|++++..+... +++..+.+ -.++.+.|+.
T Consensus 217 ~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~ 290 (591)
T 2vgl_B 217 WGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVT 290 (591)
T ss_dssp HHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHH
Confidence 889889999988874333222 23577888889999999999999999999642 33333332 2345677776
Q ss_pred hhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHh
Q 005144 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKL 377 (712)
Q Consensus 299 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~l 377 (712)
++. +++.+|..++.++..+....++.... .+..+. .+.+.+..++..++..|.+++. ..+ ...++.|..+
T Consensus 291 L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv--~~iv~~L~~~ 361 (591)
T 2vgl_B 291 LLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMIRLASQANI--AQVLAELKEY 361 (591)
T ss_dssp HTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTH--HHHHHHHHHH
T ss_pred Hhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHHHHCChhhH--HHHHHHHHHH
Confidence 664 78999999999999998655443221 112222 2224458899999999888776 111 1234556777
Q ss_pred hccCChhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchhhh--hhhhHHHHHHHHHHHh---hhhhhHHHHHHH
Q 005144 378 LDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRLEEK---IHGRVLNHLLYL 451 (712)
Q Consensus 378 l~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~~l~~l~~~---~~~~~~~~Lv~l 451 (712)
+.+.+.+++..++++|++++.. +.....+ ++.|.+...... ...++ ...+..+... ....+++.|...
T Consensus 362 l~~~d~~~r~~~v~aI~~la~~~~~~~~~~-----v~~Ll~ll~~~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~ 435 (591)
T 2vgl_B 362 ATEVDVDFVRKAVRAIGRCAIKVEQSAERC-----VSTLLDLIQTKVNYVVQEA-IVVIRDIFRKYPNKYESIIATLCEN 435 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCHHHHHHH-----HHHHHHHHHTCCHHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHHhChhHHHHH-----HHHHHHHHcccchHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHH
Confidence 7788999999999999999764 2222222 222222111110 11111 1122222221 134567888888
Q ss_pred Hhh-hhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 452 MRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 452 l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.+ .++.++..++|+|+..+..-.+. ...++.+++-+.+.++.+|..+..++.++..+.
T Consensus 436 l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 436 LDSLDEPDARAAMIWIVGEYAERIDNA-----DELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp TTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCHHHHHHHHHHHHcccccccCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 864 47888999999999986644321 122344444444567789999999999998764
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.48 E-value=5.8e-13 Score=155.40 Aligned_cols=424 Identities=11% Similarity=0.082 Sum_probs=261.4
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcCh--hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (712)
++.+++.+...+.+. +...+..|+.+|+.++.+. +...... ..+++.+++.+.++++ .+|..+
T Consensus 367 ~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH------------HHHHHH
Confidence 344555555555433 5778999999999999752 3222222 2468888999887765 899999
Q ss_pred HHHHHHhcCC--hhh-HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-----cchhHHHhcCC
Q 005144 137 AFALGLLAVK--PEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGG 208 (712)
Q Consensus 137 ~~~L~~l~~~--~~~-~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~ 208 (712)
++++++++.. +.. ... .-...++.++..+.+. . .++..++++|.+++.... .....+ ..+
T Consensus 432 ~~~l~~l~~~~~~~~~~~~-~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~i 499 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQ-HLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PAL 499 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTT-THHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHH
T ss_pred HHHHHHHHHHhhhhcCCHH-HHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHH
Confidence 9999999821 110 000 0112466677777543 2 899999999999986421 122211 345
Q ss_pred hHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC---------------CCHHHHHHHHH
Q 005144 209 IPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVG 271 (712)
Q Consensus 209 i~~L~~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~v~~~a~~ 271 (712)
++.|+..+.+.+ +.++..++.++..++...+........ .+++.++..+.. ....++..++.
T Consensus 500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 677888887544 789999999999998644433222222 255666665542 13467888999
Q ss_pred HHHHhhcCChhHHHHHHHcCChHHHHHhhccCCh-hhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHH
Q 005144 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (712)
Q Consensus 272 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 350 (712)
+|.+++.......... -..+++.++..+.+.+. .++..++.+++.++........... ..++|.+...+++.++.++
T Consensus 579 ~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr 656 (861)
T 2bpt_A 579 VLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHH
Confidence 9999876543311111 12467777888887766 8999999999998854322222222 3478889999988888999
Q ss_pred HHHHHHHHHHHH---HHH--HhcCChHHHHHhhccCC--hhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchh-
Q 005144 351 EMSAFALGRLAQ---AGI--AHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFI- 421 (712)
Q Consensus 351 ~~a~~~L~~l~~---~~~--~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~- 421 (712)
..++.++..++. ..+ .-...++.+.+.+.+.+ ..++..++.+++.++.. .+....+.. ..++.+.+....
T Consensus 657 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcC
Confidence 999999999887 111 11234556667776654 88999999999999753 222222221 122222211110
Q ss_pred -----------hhhhhhHHHHHHHHHHHh----------hhhhhHHHHHHHHhhh----hhhHHHHHHHHHHHhcCCC--
Q 005144 422 -----------VQATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVA----EKGVQRRVALALAHLCSPD-- 474 (712)
Q Consensus 422 -----------~~~~~~~~~~~l~~l~~~----------~~~~~~~~Lv~ll~~~----~~~v~~~a~~~L~~l~~~~-- 474 (712)
....+......+..+... +-..+++.+...+.+. +..++..|+.+++.++..-
T Consensus 736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g 815 (861)
T 2bpt_A 736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 001112222222222111 1233445555555553 7789999999999996532
Q ss_pred cccchhhccCchHHHHHHhc---CCCchhhhhhHHHHHhhhc
Q 005144 475 DQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 475 ~~~~~l~~~~~~~~L~~ll~---~~~~~~~~~a~~~L~~L~~ 513 (712)
..-..+.....++.|++.+. +.+..++..|.|++..+.+
T Consensus 816 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 816 GSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp STTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 21112223356788887776 4666799999999988764
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.48 E-value=2.4e-12 Score=150.40 Aligned_cols=429 Identities=16% Similarity=0.123 Sum_probs=261.5
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhH-HHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
+.+++.+...+...+.+..++..|+++|.++... +... .......+++.+..++.+.+. ++|..++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~a~ 238 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAAL 238 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHHHH
Confidence 3344444444443322467899999999988752 2111 001111246677777655444 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC------------------c
Q 005144 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------------------S 198 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~------------------~ 198 (712)
++|..++ ..+..-...+....++.++..+.+.++ .++..++..+..++.... .
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccch
Confidence 9999999 454433333333567777776655443 888899988888875310 0
Q ss_pred chhHH--HhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHH
Q 005144 199 IKTRV--RMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269 (712)
Q Consensus 199 ~~~~~--~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 269 (712)
..... .....++.++..+.. .+..++..+..+|..++...++ .+.. .+++.+...+.+++..+|..+
T Consensus 311 ~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHH
Confidence 00010 112456677777752 3467899999999998853221 1122 356677778888999999999
Q ss_pred HHHHHHhhcCCh-hHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchh-hhhhhcCChHHHHHHhCCCCH
Q 005144 270 VGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDV 347 (712)
Q Consensus 270 ~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~ 347 (712)
+++++.++.... +..... -..+++.++..+.+.++.+|..+++++++++...+... ..-.-..+++.++..+.++ +
T Consensus 387 ~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp HHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred HHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 999999987643 322222 24578899999999999999999999999986533211 0011135678888888774 8
Q ss_pred HHHHHHHHHHHHHHHHHH-----------------Hh--cCChHHHHHhhccC---ChhHHHHHHHHHHhcccCcc-hhH
Q 005144 348 QLREMSAFALGRLAQAGI-----------------AH--NGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED-NVA 404 (712)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~-----------------~~--~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~-~~~ 404 (712)
.++..++++|.+++...- .. ...++.|..++... +..++..+..++..+..... ...
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 544 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY 544 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH
Confidence 999999999999998211 00 12344555555443 35788888888888865321 111
Q ss_pred HHHhhCccccccccchh---------hhhh-------hhHHHHHHHHHHH--------hhhhhhHHHHHHHHhhhh--hh
Q 005144 405 DFIRVGGVQKLQDGEFI---------VQAT-------KDCVAKTLKRLEE--------KIHGRVLNHLLYLMRVAE--KG 458 (712)
Q Consensus 405 ~l~~~~~i~~L~~~~~~---------~~~~-------~~~~~~~l~~l~~--------~~~~~~~~~Lv~ll~~~~--~~ 458 (712)
.+.. ..++.+.+.... ...+ .......+..+.. .+-..+++.++.++++.+ +.
T Consensus 545 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 623 (876)
T 1qgr_A 545 PAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGG 623 (876)
T ss_dssp HHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 1111 111111111000 0001 1122222222221 123456778888887764 47
Q ss_pred HHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCC-CchhhhhhHHHHHhhhccc
Q 005144 459 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 459 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~ 515 (712)
++..++.++..++........-.-...++.|...+.+. ++.++..|.+++..+....
T Consensus 624 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 89999999999976432211111234678888888876 8899999999999998754
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=4.4e-11 Score=132.57 Aligned_cols=347 Identities=14% Similarity=0.143 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
+.+.+.-+--.+..++. +++.... ++..|.+-|.++++ .+|..|+++|+++.. ++..
T Consensus 83 ~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~------------~vr~lAL~~L~~i~~-~~~~---- 140 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ------------FVQGLALCTLGCMGS-SEMC---- 140 (618)
T ss_dssp SHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS------------HHHHHHHHHHHHHCC-HHHH----
T ss_pred chHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH------------hHHHHHHHHHHhcCC-HHHH----
Confidence 44444444455666665 3443332 26777888888777 899999999999984 3332
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
...++.+.++|.+.++ .++..|+.++.++...+++.. .++++.+..++.+.|+.++..|+.+|..+
T Consensus 141 -~~l~~~l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp -HHHHHHHHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 2357788888887766 999999999999998766533 26788899999999999999999999999
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHh
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 299 (712)
+..+++....+. ..++.++.+|.+ .++-.+..++.+|+.++..+++.. ...++.|..+
T Consensus 207 ~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l 279 (618)
T 1w63_A 207 CERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQV 279 (618)
T ss_dssp CCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHH
T ss_pred HHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHH
Confidence 964443222232 467877776653 478899999999999987765432 3355666666
Q ss_pred hc------cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChH
Q 005144 300 LS------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLV 372 (712)
Q Consensus 300 L~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~ 372 (712)
+. +.+..+..+++.++..+.. ++. +. ..+++.|..++.++++.+|..|+.+|..++. ..-.-.....
T Consensus 280 ~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~ 353 (618)
T 1w63_A 280 ATNTETSKNVGNAILYETVLTIMDIKS-ESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS 353 (618)
T ss_dssp HHTSCCSSTHHHHHHHHHHHHHHHSCC-CHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HhccccccchHHHHHHHHHHHHHhcCC-CHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 53 2245788899999988753 221 11 2456888899999999999999999999998 2222234566
Q ss_pred HHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 005144 373 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM 452 (712)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll 452 (712)
.++.++.+++..++..++.+|..++... +... ++..+...+
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~-nv~~--------------------------------------iv~eL~~~l 394 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGN-NIRG--------------------------------------MMKELLYFL 394 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSS-STHH--------------------------------------HHHHHHHHH
T ss_pred HHHHHccCCChhHHHHHHHHHHHHcccc-cHHH--------------------------------------HHHHHHHHH
Confidence 7889999999999999999999998643 2222 344577788
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 453 RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 453 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
.+.+.+++..++.+|+.++...... ....++.|++++...+..++..+...+..+..+
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~~~----~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYAPS----KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSCCC----HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 8889999999999999997753211 122368888888887777888888888887764
No 73
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=4.5e-12 Score=147.85 Aligned_cols=413 Identities=14% Similarity=0.093 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHHhhcC-hhhH-HHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHH
Q 005144 76 DRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (712)
+.+++..|+.+|..+... .... ........++.+...+.+.+. ++|..++.+|..++ ..++.-..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a~~~l~~l~~~~~~~~~~ 261 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAFGCLCKIMSKYYTFMKP 261 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHHHGGGCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999987541 1110 000011246666677765554 89999999999998 33332111
Q ss_pred HHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc--------------chhHH--HhcCChHHHHHhh
Q 005144 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--------------IKTRV--RMEGGIPPLVELL 216 (712)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--------------~~~~~--~~~~~i~~L~~lL 216 (712)
.+....++.+...+.+.+. +++..++.++..++..... ....+ .-...+|.++..+
T Consensus 262 ~l~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 262 YMEQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HHHHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 1221445556666655443 8999999999888753210 00001 1134677788777
Q ss_pred cCC-------CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHH
Q 005144 217 EFT-------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVL 288 (712)
Q Consensus 217 ~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~ 288 (712)
... +..++..+..+|..++...+. .+. ..+++.+...+.+.+..+|..++.+++.++.... .......
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 642 357999999999999853221 111 1246677777888899999999999999987642 3222222
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchh-hhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---
Q 005144 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAG--- 364 (712)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--- 364 (712)
..+++.++..+.+.++.+|..++++++.++..-.... ..-.-..+++.++..+.++ +.++..++++|.+++...
T Consensus 410 -~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 410 -HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp -HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS
T ss_pred -HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc
Confidence 3478889999999999999999999999985321110 0011134678888888776 999999999999988721
Q ss_pred ---HHh---cCChHHHHHhhccCC--hhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchh--------------
Q 005144 365 ---IAH---NGGLVPLLKLLDSKN--GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFI-------------- 421 (712)
Q Consensus 365 ---~~~---~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~-------------- 421 (712)
... ...++.|++++.+.+ +.++..++.++..++.. +........ ..++.+.+....
T Consensus 488 ~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 488 TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhH
Confidence 010 123455666776433 78999999999999653 222222211 112222211110
Q ss_pred --hhhhhhHHHHHHHHHHHh-------hhhhhHHHHHHHHhhhhh-hHHHHHHHHHHHhcCCCcccchhhccCchHHHHH
Q 005144 422 --VQATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 491 (712)
Q Consensus 422 --~~~~~~~~~~~l~~l~~~-------~~~~~~~~Lv~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ 491 (712)
...........+..+... +...+++.++..+.+.++ .++..++.++..++........-.-...++.|.+
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 646 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 000111222233333221 234567778888888777 8999999999998754332222122346788999
Q ss_pred HhcCCCchhhhhhHHHHHhhhccc
Q 005144 492 LLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 492 ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.+.++++.++..+..++..+....
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HhccccHHHHHHHHHHHHHHHHHh
Confidence 998889999999999999888754
No 74
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.42 E-value=1.1e-11 Score=137.27 Aligned_cols=384 Identities=17% Similarity=0.151 Sum_probs=259.1
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (712)
|+.++..|+++|+++.. ++... ..++.+.+++.+.++ .||..|+.++.++. ..|+...
T Consensus 120 n~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp SSHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGGG---
T ss_pred CHhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHHH---
Confidence 67789999999999874 33322 347889999988776 99999999999999 6776432
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC---------------C
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------------T 219 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------~ 219 (712)
+.++.+..+|.+.+. .++..|+.+|..++..++.....+ ...+|.++.+|.+ .
T Consensus 179 --~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 179 --MFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp --GGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred --HHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 567777788876655 899999999999986544321222 3678888887753 4
Q ss_pred CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
++-.+..++.+|..++..++... ....+.|..++. +.+..+...|++++..+.. ++.... .++
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~ 315 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAI 315 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHH
Confidence 78889999999999996544322 234555655553 2356899999999999853 232221 356
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChH
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLV 372 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~ 372 (712)
..|..++.+.++.++..++.+|..++...+. ++ ....+.++.++.+++..+|..++.+|..++. ..+ ...+.
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv--~~iv~ 388 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI--RGMMK 388 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST--HHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH--HHHHH
Confidence 7888889988999999999999999864332 22 2356788899999999999999999999876 111 11346
Q ss_pred HHHHhhccCChhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchhh-hhhhhHHHHHHHHHHH---hhhhhhHHH
Q 005144 373 PLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKRLEE---KIHGRVLNH 447 (712)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~-~~~~~~~~~~l~~l~~---~~~~~~~~~ 447 (712)
.|...+.+.+.+++..++.+|+.++.. +......+. .+.+..... ..........+..+.. .....++..
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~-----~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~ 463 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHID-----TIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQR 463 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHH-----HHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHH-----HHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 788888889999999999999999863 333332221 221111100 0111111122222211 124457788
Q ss_pred HHHHHhhh--hhhHHHHHHHHHHHhcCCCcc-------cchhhccCchHHHHHHhc--CCCchhhhhhHHHHHhhhccc
Q 005144 448 LLYLMRVA--EKGVQRRVALALAHLCSPDDQ-------RTIFIDGGGLELLLGLLG--STNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 448 Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~-------~~~l~~~~~~~~L~~ll~--~~~~~~~~~a~~~L~~L~~~~ 515 (712)
|+.++.+. ...+...++|+|+..+..-.+ .........++.|..++. ..++.+|..+..++.++..+.
T Consensus 464 L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~ 542 (618)
T 1w63_A 464 LYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF 542 (618)
T ss_dssp HHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC
Confidence 88888863 344455689999988532110 001111234567777775 467889999999999998865
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=7.1e-12 Score=119.03 Aligned_cols=189 Identities=23% Similarity=0.248 Sum_probs=158.6
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhh
Q 005144 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 248 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
.+.++.|+.+++++++.+|..++..|+.+.. ...++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4578999999999999999999999999842 2478899999999999999999999999852
Q ss_pred hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHH
Q 005144 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 407 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 407 (712)
.+.++.|+.++.++++.+|..++.+|+.+.. ...++.|++++.++++.++..++.+|+++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-------- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH--------
Confidence 3467999999999999999999999988543 45788999999999999999999999988521
Q ss_pred hhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchH
Q 005144 408 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 487 (712)
Q Consensus 408 ~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~ 487 (712)
..++.|..++.++++.|+..|+.+|+.+.. ...++
T Consensus 143 -----------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~ 177 (211)
T 3ltm_A 143 -----------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRA 177 (211)
T ss_dssp -----------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHH
T ss_pred -----------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHH
Confidence 145678889999999999999999999842 45678
Q ss_pred HHHHHhcCCCchhhhhhHHHHHhhhcccc
Q 005144 488 LLLGLLGSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 488 ~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
.|.+++.++++.+|..|..+|.++..+..
T Consensus 178 ~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 178 AMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999887654
No 76
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.39 E-value=1.4e-12 Score=115.90 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=93.9
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccC-CCC-CCCCCceecCCCCHHHHHHHHHHHhcCC----------------
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFIYTGS---------------- 607 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~---------------- 607 (712)
|++.. +|..|.+|+.+ +..|+||+.||.+ ++. |+....|+|+++++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 56654 79999999999 8899999999988 677 7777899999999999999999999998
Q ss_pred ----------CCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCcHH
Q 005144 608 ----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHAIS 661 (712)
Q Consensus 608 ----------~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~a~~~~~~~ 661 (712)
+.++.+++.+|+.||++|++..|...|..++...+ +++.+..+|.+...+..++
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eE 148 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 148 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHH
Confidence 77889999999999999999999999999997765 5666666666655554433
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.39 E-value=2.3e-11 Score=142.12 Aligned_cols=395 Identities=12% Similarity=0.084 Sum_probs=257.9
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC-hhhHHH-----HH------hcCCHHHHHhhhcCCCCCccccCC
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNW-----IV------EGGAVPALVKHLQAPPTSEADRNL 125 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-----~~------~~g~i~~L~~lL~~~~~~~~~~~~ 125 (712)
....++..+.+. +.+..+|..|+..|.+.... .+.+.. .. ...+.+.+++.|.+++.
T Consensus 36 ~~~~L~~~l~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~------- 104 (876)
T 1qgr_A 36 FLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY------- 104 (876)
T ss_dssp HHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-------
T ss_pred HHHHHHHHHhCC----CCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH-------
Confidence 334444444432 23567888999999986542 111100 00 01123347777876655
Q ss_pred CcccHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHHHhcc--cCCccccchhHHHHHHHHHHHHHhhcCCcchh
Q 005144 126 KPFEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (712)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 201 (712)
.+ ..++.+++.++.. +.. .-...++.+...+.+. +. .++..++.+|..++........
T Consensus 105 -----~~-~~~~~~l~~i~~~~~~~~----~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~ 166 (876)
T 1qgr_A 105 -----RP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQL 166 (876)
T ss_dssp -----SS-CHHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHH
T ss_pred -----HH-HHHHHHHHHHHHhhCccc----ccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhH
Confidence 56 7888889888822 211 1235678888888766 33 8889999999999864321100
Q ss_pred HHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhcHH-HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 202 RVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 202 ~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (712)
.-.....++.+...+.++ +..++..++.++..++..-..... ......+++.+...+.+++.++|..++.+|..++.
T Consensus 167 ~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 011124566777788776 689999999999998753222110 11111257777788888899999999999999987
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcc------------------hhhhh--hhcCChHHH
Q 005144 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD------------------CKVHI--VQRGAVRPL 338 (712)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------------------~~~~l--~~~~~l~~L 338 (712)
..+......+...+++.++..+.+.++.++..++..+.+++..... ..... .-..+++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 6554333333346788888888888899999999988888743100 00000 013456777
Q ss_pred HHHhC-------CCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHh
Q 005144 339 IEMLQ-------SPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 408 (712)
Q Consensus 339 ~~ll~-------~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 408 (712)
+..+. +.+..+|..+..+|..++. ..+. ...++.+...+.+.++.+|..++.+++.++..... ..+.
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~- 403 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-SQLK- 403 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHH-
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH-HHHH-
Confidence 77774 2356789999999999988 1111 13445566667788999999999999999864321 0000
Q ss_pred hCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCccc--chhhccCch
Q 005144 409 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGL 486 (712)
Q Consensus 409 ~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~~ 486 (712)
..-..+++.++..+.+.++.|+..|+++|++++...... ..-.-...+
T Consensus 404 ------------------------------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 404 ------------------------------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence 011236788999999999999999999999997643211 001123567
Q ss_pred HHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 487 ELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 487 ~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.|...+.++ +.++..+++++.++....
T Consensus 454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 454 QCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 8888888874 889999999999999764
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.4e-11 Score=116.87 Aligned_cols=189 Identities=28% Similarity=0.308 Sum_probs=158.5
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
...++.|+.+|.++++.++..++.+|..+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4578899999999999999999999998763 2578999999999999999999999999842
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGI 365 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (712)
.+.++.|+.+|.+.++.++..++++|+.+.. .+.++.|+.++.++++.++..++.+|+++.
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---- 140 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---- 140 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----
Confidence 2367889999999999999999999999852 246799999999999999999999998864
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
....++.|..++.++++.++..++.+|..+.. ...+
T Consensus 141 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------------------------~~~~ 176 (211)
T 3ltm_A 141 -DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------ERVR 176 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------HHHH
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------hhHH
Confidence 34578899999999999999999999999842 1145
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDD 475 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 475 (712)
+.|..++.++++.|+..|+.+|.++.....
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 668888999999999999999999976554
No 79
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.37 E-value=9.8e-12 Score=133.69 Aligned_cols=354 Identities=11% Similarity=0.069 Sum_probs=232.9
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcCh--hhHHH----H------HhcCCHHHHHhhhcCCCCCccccCCC
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNW----I------VEGGAVPALVKHLQAPPTSEADRNLK 126 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~----~------~~~g~i~~L~~lL~~~~~~~~~~~~~ 126 (712)
...++..+.+. +.+..+|..|+..|.++.... ..... . ....+-..|+..+.+.+.
T Consensus 37 ~~~L~~il~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~-------- 104 (462)
T 1ibr_B 37 LVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY-------- 104 (462)
T ss_dssp HHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------
T ss_pred HHHHHHHHHcC----CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------
Confidence 33444444432 235678899999999987531 00000 0 011234557777877665
Q ss_pred cccHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHHHhcc--cCCccccchhHHHHHHHHHHHHHhhcC-Ccchh
Q 005144 127 PFEHEVEKGSAFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKT 201 (712)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 201 (712)
.+ ..++.+++.++. .|.. .-.+.++.|+..+.+. +. .++..++.+|..++... +..-.
T Consensus 105 ----~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 105 ----RP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp ----SS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTG
T ss_pred ----hh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhH
Confidence 67 889999999982 2321 1246788888888776 43 88999999999999643 21111
Q ss_pred HHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhcHH-HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 202 RVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 202 ~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (712)
-....+++.+...+.++ ++.++..|++++.++...-..... .....-+++.+...+.++++.+|..++.+|..++.
T Consensus 168 -~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 168 -DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp -GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 11124677888889887 799999999999987632221110 00111146667777888899999999999999986
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-----------------chhhhhhh---cCChHHH
Q 005144 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-----------------DCKVHIVQ---RGAVRPL 338 (712)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------~~~~~l~~---~~~l~~L 338 (712)
..+......+..++++.++..+.+.+++++..++..+..++.... .....+.+ ..++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 544321111111567777888888899999999999988875310 00001111 3456777
Q ss_pred HHHhCC-------CCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhh
Q 005144 339 IEMLQS-------PDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 409 (712)
Q Consensus 339 ~~ll~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 409 (712)
+..+.. .+..+|..|..+|..++. ....-...++.+...+.+.++.+|..++.+++.++.....
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------- 399 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP------- 399 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT-------
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH-------
Confidence 777743 245789999999999988 1111123456666777889999999999999999864221
Q ss_pred CccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 410 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 410 ~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
..+.. .-..+++.++..+.++++.||..|+++|++++...
T Consensus 400 ~~~~~-------------------------~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 400 SQLKP-------------------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TTTCT-------------------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHH-------------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 00000 11347888999999999999999999999997643
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=3.8e-11 Score=112.98 Aligned_cols=184 Identities=28% Similarity=0.315 Sum_probs=158.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
+..+.++++|.++++.++..|+.+|..+.. .+.++.|+.++.++++.+|..++.+|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-----
Confidence 566889999999999999999999998763 2468999999999999999999999999842 2
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005144 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIA 366 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (712)
..++.|+.+|.+.++.+|..++++|+++.. ...++.|+.++.++++.+|..++++|+.+.
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----- 135 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----- 135 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 367889999999999999999999999752 246789999999999999999999998864
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHH
Q 005144 367 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 446 (712)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 446 (712)
....++.|..++.+.++.++..|+.+|..+.. ...++
T Consensus 136 ~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------------------------------------~~~~~ 172 (201)
T 3ltj_A 136 DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------ERVRA 172 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------HHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------hhHHH
Confidence 35678889999999999999999999998842 11456
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 447 HLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 447 ~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
.|..++.++++.|+..|+.+|..+.
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7888899999999999999999874
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.31 E-value=5.3e-11 Score=111.97 Aligned_cols=184 Identities=28% Similarity=0.297 Sum_probs=157.1
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~ 236 (712)
+..+.++..|.+.+. .++..++..|..+.. ...++.|++++.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSY--------YVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHTTCSCH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHhcCCCH--------HHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 346788899988776 999999999988753 2467899999999999999999999998863
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 005144 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (712)
.+.++.|+.++.++++.+|..|+++|+.+.. + ..++.|+.++.+.++.++..++++|+
T Consensus 75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2468999999999999999999999999842 2 36788999999999999999999999
Q ss_pred HHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
++.. ...++.|..++.+.++.++..++.+|+.+.. ..+++.|..++.+.++.++..|..+|.++
T Consensus 133 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9852 3467899999999999999999999998643 34567889999999999999999999987
Q ss_pred c
Q 005144 397 A 397 (712)
Q Consensus 397 ~ 397 (712)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 5
No 82
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.26 E-value=4.9e-10 Score=125.38 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=148.8
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHH-HhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
+..+++.|.+. ++..|..|+++|++++.++..+..+...|++..+ ..+|.+++. +||..|+
T Consensus 36 i~Pll~~L~S~------~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~ 97 (684)
T 4gmo_A 36 ILPVLKDLKSP------DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGW 97 (684)
T ss_dssp THHHHHHHSSS------CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHH
T ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHH
Confidence 34455555443 6667999999999999999999999999998775 556777666 9999999
Q ss_pred HHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCC------c-------cccchhHHHHHHHHHHHHHhhcCCcchhH
Q 005144 138 FALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDS------N-------CSRAVNSVIRRAADAITNLAHENSSIKTR 202 (712)
Q Consensus 138 ~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~------~-------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 202 (712)
++|.||+ .+++.+..+...|++++|..++...... . .....+++...++.+|.++|..+......
T Consensus 98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999 6789999999999999999998653210 0 01112356677889999999877777777
Q ss_pred HHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhcHHHHHhCCCH---HHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 203 VRMEGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNAL---PTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 203 ~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
+...+.++.|+..|.+. ..+++..|+.+|..++.+++.....+.+.+.. ..+..+.++.+ ..+..++++|.|+
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni 256 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNV 256 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhH
Confidence 88889999999988543 46899999999999999888887777776543 33333333332 2345566666665
No 83
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.24 E-value=8.1e-10 Score=133.57 Aligned_cols=424 Identities=12% Similarity=0.071 Sum_probs=259.3
Q ss_pred HHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 57 ~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
..++.+++.|.+ .++++|..|+.+|+.++.. +..... +++.++..+.+++. .+|.
T Consensus 48 ~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~~~~~~~~~-----i~~~Ll~~l~d~~~------------~vR~ 104 (1230)
T 1u6g_C 48 KVVKMILKLLED------KNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKE------------QLRD 104 (1230)
T ss_dssp HHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSS------------HHHH
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCcH------------HHHH
Confidence 445555555543 3778899999999999873 333322 47788888887776 8999
Q ss_pred HHHHHHHHhc--CChh-----hHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCc-chhHHHhc
Q 005144 135 GSAFALGLLA--VKPE-----HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRME 206 (712)
Q Consensus 135 ~a~~~L~~l~--~~~~-----~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~ 206 (712)
.|+.+|+.++ ..+. .... .....++.|...+.+..+ +.++..++.+|..++...+. ... ...
T Consensus 105 ~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~-------~~~~~~al~~l~~~~~~~~~~l~~--~~~ 174 (1230)
T 1u6g_C 105 ISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQED-------VSVQLEALDIMADMLSRQGGLLVN--FHP 174 (1230)
T ss_dssp HHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSC-------HHHHHHHHHHHHHHHHHTCSSCTT--THH
T ss_pred HHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence 9999999998 2222 0111 122357888888864221 28899999999999853322 111 113
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhc---------------------H----H---HHHh----------C
Q 005144 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---------------------K----N---QIVE----------C 248 (712)
Q Consensus 207 ~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~---------------------~----~---~~~~----------~ 248 (712)
..++.+...+.++++.+|..|+.+|..++...+.. + . .+.. .
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 254 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 254 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667777888888899999999998887432210 0 0 0000 2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc---------------------------
Q 005144 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--------------------------- 301 (712)
Q Consensus 249 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--------------------------- 301 (712)
.+++.++..+.++++++|..++.++..++...+....... ..+++.++..+.
T Consensus 255 ~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~ 333 (1230)
T 1u6g_C 255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ 333 (1230)
T ss_dssp THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchh
Confidence 4566777777778888999999988888764332111111 123344444332
Q ss_pred ----------cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------
Q 005144 302 ----------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAG------- 364 (712)
Q Consensus 302 ----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~------- 364 (712)
+..+++|..++.++..++...++....+. ..+++.++..+.+.++.+|..+..++..+....
T Consensus 334 ~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 412 (1230)
T 1u6g_C 334 GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 412 (1230)
T ss_dssp -----------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred hcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc
Confidence 11346788999999998864333222222 467788888888889999999999988777510
Q ss_pred -----------------HHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC-cchhHHHHhhCccccccccchhhhhhh
Q 005144 365 -----------------IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATK 426 (712)
Q Consensus 365 -----------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~ 426 (712)
-.-...++.+.+.+++.++.++..++.++..++.. +....... ...++.+...........
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 413 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCH
T ss_pred cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCCCcc
Confidence 00012234455558888999999999999988643 21111100 011111111111111111
Q ss_pred hHHHHHHHHHHHh-----------hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC--C-----cccchhhccCchHH
Q 005144 427 DCVAKTLKRLEEK-----------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D-----DQRTIFIDGGGLEL 488 (712)
Q Consensus 427 ~~~~~~l~~l~~~-----------~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~--~-----~~~~~l~~~~~~~~ 488 (712)
+.....+..+... +-..+++.++..+.+.+..++..|++++..++.. . .....-.-...++.
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 2222222222211 2346788888888888888888898888888632 1 01111122456778
Q ss_pred HHHHh--cCCCchhhhhhHHHHHhhhcccc
Q 005144 489 LLGLL--GSTNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 489 L~~ll--~~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
++..+ .+.++.+|..|+.++..|+....
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888 66788899999999999988653
No 84
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.23 E-value=1.1e-09 Score=132.50 Aligned_cols=417 Identities=14% Similarity=0.089 Sum_probs=256.6
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhH-HHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
++.+++.+.+. |+..|..|...|.+....+... ..-.....++.+++.|.+.+. ++|..|+
T Consensus 8 l~~lL~~l~s~------d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~ 69 (1230)
T 1u6g_C 8 ISNLLEKMTSS------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAV 69 (1230)
T ss_dssp HHHHHHHTTCS------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred HHHHHHhcCCC------CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence 44555555544 6778999988888765432100 000011347788888876544 9999999
Q ss_pred HHHHHhc-CChh-hHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcch-----hHHHhcCChH
Q 005144 138 FALGLLA-VKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIP 210 (712)
Q Consensus 138 ~~L~~l~-~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~ 210 (712)
.+|++++ ..++ ... ..++.++..+.+.+. .++..++.+|..++....... ..-.....+|
T Consensus 70 ~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp 136 (1230)
T 1u6g_C 70 KCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 136 (1230)
T ss_dssp HHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHH
Confidence 9999999 3332 111 245667777766555 888889999999886443220 1112345788
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 211 PLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 211 ~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
.|...+. ++++.++..|+.+|..++...+....... ...++.++..+.++++.+|..|+.+|+.++...++. + -
T Consensus 137 ~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~ 211 (1230)
T 1u6g_C 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-F 211 (1230)
T ss_dssp HHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------C
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-H
Confidence 8999998 58899999999999999852222111111 235777888888999999999999999998654331 1 2
Q ss_pred cCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Q 005144 290 AGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGI 365 (712)
Q Consensus 290 ~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~ 365 (712)
...++.++..|.+. +..++..++.+++.++...+....... ..+++.++..+.+.++.+|..+..++..++. ..+
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 34577788777654 346788888899988864333211111 4688999999998899999999999999887 100
Q ss_pred --HhcCChHHHHHhhc-------------------------------------cCChhHHHHHHHHHHhcccCcc-hhHH
Q 005144 366 --AHNGGLVPLLKLLD-------------------------------------SKNGSLQHNAAFALYGLADNED-NVAD 405 (712)
Q Consensus 366 --~~~~~i~~L~~ll~-------------------------------------~~~~~v~~~a~~~L~~l~~~~~-~~~~ 405 (712)
.-...++.+++.+. +..+.+|..|+.++..++.... ....
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 00112222322221 1124678899999998875322 1222
Q ss_pred HHhhCccccccccchh-hhhhhhHHHHHHHHHH--------------------------HhhhhhhHHHHHHHHhhhhhh
Q 005144 406 FIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLE--------------------------EKIHGRVLNHLLYLMRVAEKG 458 (712)
Q Consensus 406 l~~~~~i~~L~~~~~~-~~~~~~~~~~~l~~l~--------------------------~~~~~~~~~~Lv~ll~~~~~~ 458 (712)
+.. ..++.+...... ....+......+..+. ...-..+++.+.+.+.+.++.
T Consensus 371 ~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 371 FYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 221 122222211100 1111111111111111 112234556666668888999
Q ss_pred HHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCc--hhhhhhHHHHHhhhc
Q 005144 459 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLAN 513 (712)
Q Consensus 459 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~--~~~~~a~~~L~~L~~ 513 (712)
++..++.+|+.++........-.-...++.+..++.++++ .++..++..+..+..
T Consensus 450 vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999886542211111123567888899988765 788888888888765
No 85
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.16 E-value=8e-11 Score=94.63 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=65.1
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHh-----c---CCCC---CCh
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL 612 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~---~~~~---~~~ 612 (712)
+.+.. +|..|.+||.+ +..|+||+.||.+ .+.|+....|+++++++.+++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 34444 78999999999 9999999999987 6788888899999999999999999999 4 6777 899
Q ss_pred hhHHHHHHHHHHhC
Q 005144 613 DIAQDLLRAADQYL 626 (712)
Q Consensus 613 ~~~~~l~~~A~~~~ 626 (712)
+++.+|+.||++|+
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999999986
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=3.1e-08 Score=109.32 Aligned_cols=353 Identities=17% Similarity=0.183 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH
Q 005144 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (712)
+.+.+.-+--.+..++.. ++....+ +..+.+=|.++++ .+|..|+++|+++.. ++...
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~--- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE--- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH---
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH---
Confidence 555666666666766663 4443322 5566666777666 899999999999974 44332
Q ss_pred hCCChHHHHHHH--hcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005144 155 DNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (712)
Q Consensus 155 ~~~~l~~L~~lL--~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 232 (712)
..++.+.+.| .+.++ .++..|+.++.++...+++... ..++++.+.++|.++++.++..|+.++.
T Consensus 146 --~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 146 --AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp --HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 2567888888 55555 9999999999999986665322 2478999999999999999999999999
Q ss_pred HhhcCChhcHHHHHhCCCHHHHHHhhcCC-------------CHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHH
Q 005144 233 TLAFKNDENKNQIVECNALPTLILMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIG 298 (712)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~l~~L~~ll~~~-------------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~ 298 (712)
.++..++........ ..+..|..++..+ ++-.+...+..|..++.. +++....+.+ .+..++.
T Consensus 213 ~i~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 213 TLAQKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HHHHHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred HHHHhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 999755432111111 1233333443221 678999999999998764 3343333322 2333332
Q ss_pred hh---------ccCC--hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-H--H
Q 005144 299 LL---------SSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-A--G 364 (712)
Q Consensus 299 lL---------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~--~ 364 (712)
.+ ++.+ ..+..+++.++..+.. +++.. ..++..|..++.++++.+|..++.+|..++. . .
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 22 1112 3778888888888752 22221 2356788899988999999999999999887 1 1
Q ss_pred HHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 365 IAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 365 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
-.-......++..+. +++..++..++..|..++. +.|...
T Consensus 364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~-------------------------------------- 404 (621)
T 2vgl_A 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ-------------------------------------- 404 (621)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH--------------------------------------
Confidence 112345677888888 8999999999999999984 334333
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++..|...+.+.+.+++..++.+++.++...... ....+..|.+++......+...+...+..+...
T Consensus 405 Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 405 IVAEMLSYLETADYSIREEIVLKVAILAEKYAVD----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 3445777777788888888888888886432211 122357777777765555666666666666543
No 87
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=2e-08 Score=110.84 Aligned_cols=332 Identities=14% Similarity=0.106 Sum_probs=223.8
Q ss_pred CCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHH
Q 005144 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (712)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (712)
.+.+..++++.+++. +.+..+.-++..++ .+++.... .+..+.+=|.++++ -++
T Consensus 74 ~~~~~vvkl~~s~~~------------~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~--------~ir 128 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRY------------TEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP--------TFM 128 (621)
T ss_dssp SCHHHHHHGGGCSCH------------HHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH--------HHH
T ss_pred hhHHHHHHHhcCCCH------------HHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH--------HHH
Confidence 467778889988777 89999999999999 66664322 24555556665554 788
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
..|+.+++++.. ++ .....++.+.+++ .+.++.||+.|+.++..+...+++... ..+.++.+..++.+
T Consensus 129 ~lALr~L~~i~~--~e-----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 129 GLALHCIANVGS--RE-----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHHHHHHCC--HH-----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTC
T ss_pred HHHHHHhhccCC--HH-----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCC
Confidence 889999999863 22 2235678899999 889999999999999999975544321 24789999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC-------------ChhhHHHHHHHHHHHhcCC-cchh
Q 005144 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------------CSESQREAALLLGQFAATD-SDCK 326 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------------~~~v~~~a~~~L~~l~~~~-~~~~ 326 (712)
.++.|+..|+.++..++..++......+ ...+..|..++..+ ++-.+......+..++..+ ++..
T Consensus 199 ~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999876654211110 11223333343221 3556666666776665422 2222
Q ss_pred hhhhhcCChHHHHHHhC-C--------CCH--HHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 327 VHIVQRGAVRPLIEMLQ-S--------PDV--QLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 327 ~~l~~~~~l~~L~~ll~-~--------~~~--~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
..+. ++++.++..+. . .+. .+...++.++..+.. ..+. ..++..|..++.+.++.++..++..|.
T Consensus 278 ~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-~~~~~~L~~~L~~~~~niry~aL~~l~ 354 (621)
T 2vgl_A 278 GRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-VRACNQLGQFLQHRETNLRYLALESMC 354 (621)
T ss_dssp HHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 2222 13334443321 1 122 666667676666543 2211 235667888888889999999999999
Q ss_pred hcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHh-hhhhhHHHHHHHHHHHhcCC
Q 005144 395 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSP 473 (712)
Q Consensus 395 ~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~ 473 (712)
.++........+. .....++.++. ++++.++..++..|..++..
T Consensus 355 ~l~~~~~~~~~~~-----------------------------------~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 355 TLASSEFSHEAVK-----------------------------------THIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHTTCTTTHHHHH-----------------------------------TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHhccCcHHHHH-----------------------------------HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 9976432111111 13455778888 88999999999999999865
Q ss_pred CcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 474 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 474 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
.... ..+..|...+.+.+.+++..++.++..++.+.
T Consensus 400 ~Nv~------~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 400 SNAQ------QIVAEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HHHH------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 3222 23567788888889999999999999998764
No 88
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.03 E-value=6.1e-10 Score=96.30 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=82.3
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 607 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 607 (712)
+.+.. +|..|.+|+.+ +..|++|+.||.+.- .+.|++++++..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 55665 78999999998 789999999997631 4589999999999999999999876
Q ss_pred --------CCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcCChhh
Q 005144 608 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 646 (712)
Q Consensus 608 --------~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~~~~~ 646 (712)
+.++.+++.+|+.||+||++.+|.+.|..++...+.-.+
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt 125 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKT 125 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 567889999999999999999999999999988764433
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.98 E-value=4.1e-09 Score=117.91 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=163.9
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhcccCCccccchhHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~ 184 (712)
+.++++.|+++++ +.|..|+++|++|+.++..+..+...+++..++. +|.+.+. +++..
T Consensus 36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~ 95 (684)
T 4gmo_A 36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA 95 (684)
T ss_dssp THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence 4445677888887 8999999999999998999999999999988765 5666555 99999
Q ss_pred HHHHHHHHhhc-CCcchhHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhcCChhcH
Q 005144 185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK 242 (712)
Q Consensus 185 a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~---------------------~~v~~~a~~~L~~L~~~~~~~~ 242 (712)
|+++|.||+.+ .......+...|++++|..+++... ..+...++.+|.+|+.+++...
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999965 4567777889999999999885211 1345568889999998777777
Q ss_pred HHHHhCCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh--ccCChhhHHHHHHHHHH
Q 005144 243 NQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQ 317 (712)
Q Consensus 243 ~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~L~~ 317 (712)
..+...++++.|+.++.+ ...+++..|+.+|.+++..++...+.+.+.+....+..++ ...+...+..++++|.|
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 788888899999988744 2578999999999999999999888888876543332222 33445567889999999
Q ss_pred HhcC-----CcchhhhhhhcCChHHHHHHhC
Q 005144 318 FAAT-----DSDCKVHIVQRGAVRPLIEMLQ 343 (712)
Q Consensus 318 l~~~-----~~~~~~~l~~~~~l~~L~~ll~ 343 (712)
+... ...........-+++.+...+.
T Consensus 256 i~~~~~~~d~s~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 256 VFTSLQWMDHSPGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp HHHHHTCBTTBCCGGGCSGGGTHHHHHHHHT
T ss_pred HhhhhhhhhcchhhHHHHHHHHHHhhhhhHh
Confidence 8531 1122223333445566666653
No 90
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.96 E-value=2.3e-10 Score=101.39 Aligned_cols=109 Identities=15% Similarity=0.285 Sum_probs=64.0
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 607 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 607 (712)
|.+.. +|..|.+|+.+ +..|++|+.||.+.. ....|+|++++..+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 45554 79999999998 789999999997643 34589999999999999999999986
Q ss_pred ---------CCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCc
Q 005144 608 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHA 659 (712)
Q Consensus 608 ---------~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~a~~~~~ 659 (712)
+.++..++.+|+.||+||++..|...|..++...+ +++.+..+|.+...+..
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~ 145 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCH
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Confidence 35677889999999999999999999999999988 78888777777655543
No 91
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.71 E-value=3.5e-06 Score=93.99 Aligned_cols=306 Identities=15% Similarity=0.114 Sum_probs=200.1
Q ss_pred cHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC
Q 005144 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (712)
++.++..|+.+|+.+. +... .++..|...|.+.+......+...++..|+..|+.+..+... . .
T Consensus 408 ~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e------e 472 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I------E 472 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H------H
T ss_pred cHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H------H
Confidence 4489999999999998 4321 136777888876652111111226777788888877653322 1 2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (712)
+++.|...+.+++..++..|+.+|+.+-.+.. +. .++..|+..+ .+.+..+++.++..|+.+..+.++
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---- 541 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---- 541 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG----
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH----
Confidence 45678888888887777788888886633221 11 1234444433 456788999999999998777665
Q ss_pred HHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHHHH
Q 005144 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQAG 364 (712)
Q Consensus 287 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 364 (712)
..+.+++.|. +.++.+|..++.+++--..+..+. ..++.|++.+ .+.+..+|..|+.+|+.++.
T Consensus 542 -----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~-- 607 (963)
T 4ady_A 542 -----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL-- 607 (963)
T ss_dssp -----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--
T ss_pred -----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--
Confidence 4666777776 467888888888877544332221 2345555554 56788899999888887654
Q ss_pred HHhcCChHHHHHhh-ccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhh
Q 005144 365 IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 443 (712)
Q Consensus 365 ~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (712)
.+...++.++..+ ++.++.+|..++.+|+.++....+ ..
T Consensus 608 -g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---------------------------------------~~ 647 (963)
T 4ady_A 608 -RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---------------------------------------QS 647 (963)
T ss_dssp -SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---------------------------------------HH
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---------------------------------------HH
Confidence 2234567777755 678999999999999999654322 12
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcC--CCchhhhhhHHHHHhhhcc
Q 005144 444 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 444 ~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~L~~~ 514 (712)
++..|..++.+.+..|+..|+.+|+.+.....+...-.-.+.+..|.....+ .++..+..+..+..-+.-.
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 4556788889999999999999999996544322100012334556666654 3455777776666655443
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.70 E-value=6.3e-07 Score=89.82 Aligned_cols=275 Identities=13% Similarity=0.015 Sum_probs=155.1
Q ss_pred HHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 005144 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (712)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~ 239 (712)
..+++++.+.+. ++++..--.+.+++...++ .+ =++..+.+=+.++++-++-.|+.+|+++.. +
T Consensus 71 ~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~ 134 (355)
T 3tjz_B 71 FAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--S 134 (355)
T ss_dssp HHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--T
T ss_pred HHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--H
Confidence 445667766655 7777777777777754222 12 256788899999999999999999999984 3
Q ss_pred hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 005144 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (712)
Q Consensus 240 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (712)
+-.+. +.+.+.+.+.+.++.||..|+-+...|...+++.. .+++..+.+++.+.++-+...|..++..+.
T Consensus 135 ~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 135 TMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp TTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 33222 35667788899999999999999999988777643 368999999999999999999999999998
Q ss_pred cCCcchhhhhhhcCChHHHHHHhCC---CCHHHHHHHHHHHHHHHH-H-HHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005144 320 ATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQ-A-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 320 ~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~-~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 394 (712)
..+.. .+..++..+.. .++-.+......+..++. . .-.....++.+..++++.++.|...|+.++.
T Consensus 205 ~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 205 KNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp TTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHT
T ss_pred hhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 64321 23344444432 245444444444434333 2 2233456677788888999999999999999
Q ss_pred hcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 005144 395 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 474 (712)
Q Consensus 395 ~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~ 474 (712)
.+...+.. ... . +...|..++.++++.+|..|++.|..++...
T Consensus 276 ~l~~~~~~---~~~-~---------------------------------a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 276 NLPGCSAK---ELA-P---------------------------------AVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp C------------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred hccCCCHH---HHH-H---------------------------------HHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 98653221 111 1 2233667788999999999999999997765
Q ss_pred cccchhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 475 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 475 ~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
+..-. ..-.-+.+++.++|..+...|...|.+
T Consensus 319 P~~v~----~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 319 PSAVT----ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ------------------------------------
T ss_pred cHHHH----HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 43211 233567899999999999888877654
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.67 E-value=2.6e-06 Score=73.57 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=144.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 205 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
+..++..++.+|.++-..++.+|+.++.+++...++....+ +..|+.++ +++....-....++++.++.-+|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 44677889999988889999999999999998777665554 34455554 4566777788899999998877775
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Q 005144 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ- 362 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~- 362 (712)
... .+|.+..-..-+++.++-....+|..++..++.... +++.-+..++.+++..-+..++..+..+..
T Consensus 105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 443 567777777778999999999999999987776543 445778899999998778777777776666
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcch
Q 005144 363 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 402 (712)
Q Consensus 363 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 402 (712)
..-.-...++.|..+|++.+.-+|..++.+|.+++...+.
T Consensus 175 ~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH
Confidence 3333456789999999999999999999999999875433
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.62 E-value=4.5e-06 Score=72.13 Aligned_cols=214 Identities=18% Similarity=0.194 Sum_probs=165.8
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcch
Q 005144 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDC 325 (712)
Q Consensus 247 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 325 (712)
+..+++.++.+|.++--.|+.+|+..+.+++..-++.... .+..|+.+++ +..-.+..+.+.+++.++...++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 4567888999999988899999999999999887775444 3455666665 456677788999999999766654
Q ss_pred hhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhH
Q 005144 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 404 (712)
Q Consensus 326 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 404 (712)
.. +++|.+..-..-.++.++.+...+|..++. ....-.+.+.-+..++.+++..=+-.|+.++..+..+...
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~-- 177 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-- 177 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH--
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc--
Confidence 33 456888888888999999999999999998 3333345567788888999988888888888887654211
Q ss_pred HHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-ccchhhcc
Q 005144 405 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDG 483 (712)
Q Consensus 405 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~ 483 (712)
+-...+|+|..+|.+.+.-|+..|..+|.+++...+ .+.+
T Consensus 178 -----------------------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki---- 218 (253)
T 2db0_A 178 -----------------------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV---- 218 (253)
T ss_dssp -----------------------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH----
T ss_pred -----------------------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH----
Confidence 123368999999999999999999999999987655 3333
Q ss_pred CchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 484 GGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 484 ~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
+...++=+++++..+++..-.+|..+.-
T Consensus 219 --i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 219 --VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp --HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3455566778888899999888887763
No 95
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.59 E-value=3.5e-07 Score=88.35 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=140.1
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH---HHH--
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ---AGI-- 365 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~---~~~-- 365 (712)
+.+.+.+.+.+.++..|+.++..|..+..+.+....... ..+++.|...+ ++.+..++..|+.++..|+. ..+
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344577888899999999999999999875332211111 24578888888 49999999999999999998 111
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhH
Q 005144 366 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 445 (712)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 445 (712)
.-...++.+++.+.+++..+|..+..+|.++...... ..++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------------~~ll 135 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------------EAQQ 135 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------------HHHH
Confidence 2234678888899999999999999999998753210 1256
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCc-c-cchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 446 NHLLYLMRVAEKGVQRRVALALAHLCSPDD-Q-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 446 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~-~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
+.+...+++.++.+|..++..|..+..... . .....-...+|.|..++.++++.+|..|..++..++...
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 778888999999999999999999754422 1 111112367899999999999999999999999998765
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.59 E-value=7e-07 Score=89.45 Aligned_cols=244 Identities=13% Similarity=0.042 Sum_probs=154.4
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
.+.+++++.+++. .++...--.+.+++..++- .+ =++..+.+=++++++ -++..|
T Consensus 70 f~~v~kl~~s~d~------------~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~--------~iR~lA 124 (355)
T 3tjz_B 70 FFAMTKLFQSNDP------------TLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKED--------SYRGPA 124 (355)
T ss_dssp HHHHHGGGGCCCH------------HHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCH--------HHHHHH
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcH--------hHHHHH
Confidence 5667889998877 8888888888888844322 11 135566666666554 888899
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHH
Q 005144 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (712)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 265 (712)
+++|+++.. ++.-+ ...+.+.+.+.+.++-|+..|+-+...|...+++.. + +.++.+.+++.+.++.|
T Consensus 125 LRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V 192 (355)
T 3tjz_B 125 VRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMV 192 (355)
T ss_dssp HHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHH
T ss_pred HHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccH
Confidence 999999974 32222 345678888999999999999999999997555532 2 58899999999999999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccC---ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.+|+.+|..+...+.. .+..++..+..+ ++-.+......+..++..++. -.....++.+..+|
T Consensus 193 ~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 193 QYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCL 259 (355)
T ss_dssp HHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCC
T ss_pred HHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHH
Confidence 99999999999765432 223334444332 232333333333333332200 12245678888889
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC
Q 005144 343 QSPDVQLREMSAFALGRLAQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 399 (712)
++.++.|..+|+.++..+.. ..-.-..++..|..++.++++.+|..|+..|..+...
T Consensus 260 ~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 260 RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp CCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred cCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999998876 2212234567778888999999999999999888653
No 97
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.56 E-value=1.1e-05 Score=82.40 Aligned_cols=340 Identities=13% Similarity=0.154 Sum_probs=205.0
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC---cchhHHHhcCChH-HHHH-hhcCCCHHHHHHHHHHH
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGIP-PLVE-LLEFTDTKVQRAAAGAL 231 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~-~L~~-lL~~~~~~v~~~a~~~L 231 (712)
.+...++++|...... +++.+.+..+..+...++ .....+....-.. .+.. .+..++.-....++.++
T Consensus 77 ~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp TTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 4667788888875553 888888888888887665 2222333322221 1332 23333344555666666
Q ss_pred HHhhcCChhcHHHHHhCCCHH--HHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcC--ChHHHHHhhcc----
Q 005144 232 RTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS---- 302 (712)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~l~--~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~l~~L~~lL~~---- 302 (712)
..++.......+.+ . ..+. .++..++. .+...+.-++.+|..|... ++.+..+.+.+ .++.++.++..
T Consensus 150 ~ll~~~~~~~~~~l-~-~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLHNVKLV-E-KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTCCHHHH-H-HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCccHhHH-H-HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 66653222211111 1 1222 34455555 2455566788888888765 67777776533 35666544431
Q ss_pred -----------C--ChhhHHHHHHHHHHHhcCCcchhhhhhhcCCh--HHHHHHhC-CCCHHHHHHHHHHHHHHHH-H--
Q 005144 303 -----------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQ-SPDVQLREMSAFALGRLAQ-A-- 363 (712)
Q Consensus 303 -----------~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l--~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~-- 363 (712)
+ ...++.+++.++|-++. +++....+.+.++. +.|+..++ +....+.+-++.+|.|+.. .
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 35678999999999986 44555556655543 56666664 4678899999999999886 1
Q ss_pred --------HHHhcCChHHHHHhhcc---CChhHHHHHHH-------HHHhcccCcchhHHHHhhCccccccccchhhhhh
Q 005144 364 --------GIAHNGGLVPLLKLLDS---KNGSLQHNAAF-------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 425 (712)
Q Consensus 364 --------~~~~~~~i~~L~~ll~~---~~~~v~~~a~~-------~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 425 (712)
.+...++ ..+++.|.. .|+++....-. .+..++.-++...++.. |.++ +.. .+.+
T Consensus 306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~----WSP-~H~s 378 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLC----WSP-PHVD 378 (480)
T ss_dssp THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCC----CCG-GGGC
T ss_pred hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcc----cCC-Cccc
Confidence 1222344 445555533 35555443333 23333434444444432 3221 111 1111
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhh----------hhhhHHHHHHHHHHHhcCCC-cccchhhccCchHHHHHHhc
Q 005144 426 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG 494 (712)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~----------~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~~~~L~~ll~ 494 (712)
..-......++.+ -+..++..|+++|.+ .++.+..-||.=|+.++... .++.++.+.||-..+.+++.
T Consensus 379 e~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 379 NGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN 457 (480)
T ss_dssp HHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS
T ss_pred hhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc
Confidence 1112222233322 356788999999984 47888999999999998754 48888888899999999999
Q ss_pred CCCchhhhhhHHHHHhhhccc
Q 005144 495 STNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 495 ~~~~~~~~~a~~~L~~L~~~~ 515 (712)
++|++||..|..|+..+..+.
T Consensus 458 h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987664
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.55 E-value=4e-06 Score=75.94 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=149.7
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~ 237 (712)
.+..|..+|.+.++ .++.+++.+|..+...-+..-....-...++.++.++++.|..+...|+.+|..|..+
T Consensus 34 ~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 57888899977766 9999999999999976555444455567899999999999999999999999999987
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 005144 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (712)
Q Consensus 238 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (712)
.|-....+.. ++..+..+++++++-.+.+++..++.+-..+.. .+++..+..++.+.+.+++..+..++.+
T Consensus 106 vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 106 VPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp CCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7777666654 578899999999999999999999999433322 2356778899988899999999999999
Q ss_pred HhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
++..+.+.. ++ .+++.-+-.++++.|+.+++.|+.++-.+..
T Consensus 177 ia~~S~D~~--i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 177 MLNSSADSG--HL-TLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HGGGCSSCC--CG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhcccCCHH--HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 996443211 11 3456778889999999999999999988776
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.52 E-value=1.3e-06 Score=78.98 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=163.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhh
Q 005144 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (712)
Q Consensus 249 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (712)
+.+..|..++.+.++.++.+++.+|..+...-+.......-..+++.++.++.+.+..+...|..++..+-.+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 46788999999999999999999999998764444444445668999999999999999999999999998765533333
Q ss_pred hhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHh
Q 005144 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 408 (712)
Q Consensus 329 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 408 (712)
+. .+...+..+++++++-.+.+++..++.+ ...-...+.+..+..+++|.+.+++..++.++.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~----- 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS----- 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC-----
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH-----
Confidence 32 3567888999999999999999999987 300001123456788889999999999999999998654321
Q ss_pred hCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHH
Q 005144 409 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 488 (712)
Q Consensus 409 ~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 488 (712)
+.++. ++.-+-.++++.|+.++..|+.++-.+.+.+-..+.+.+--++..
T Consensus 185 -~i~~~-----------------------------I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 185 -GHLTL-----------------------------ILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp -CCGGG-----------------------------TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred -HHHHH-----------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 11111 333467889999999999999999999887665444433333333
Q ss_pred HH-HHh-cCCCchhhhhhHHHHHh
Q 005144 489 LL-GLL-GSTNPKQQLDGAVALFK 510 (712)
Q Consensus 489 L~-~ll-~~~~~~~~~~a~~~L~~ 510 (712)
.+ .+. ..+.|.++..|-.....
T Consensus 235 ~v~~l~~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 235 IVDGLVYREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp HHHHGGGCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Confidence 33 444 34666677666554433
No 100
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.52 E-value=2e-07 Score=74.59 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=68.2
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC--------------CCCC
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT 611 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~--------------~~~~ 611 (712)
+.+.. +|..|.+++.+ +..|++++.|+.+++ |...+.|+|++++...++.+++|+|... .+++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 55555 79999999997 789999999998866 6666789999999999999999999853 2477
Q ss_pred hhhHHHHHHHHHHhCh
Q 005144 612 LDIAQDLLRAADQYLL 627 (712)
Q Consensus 612 ~~~~~~l~~~A~~~~~ 627 (712)
.+.+.+|+.||+|+++
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999975
No 101
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.48 E-value=1.4e-06 Score=84.03 Aligned_cols=174 Identities=15% Similarity=0.235 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHh
Q 005144 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (712)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 257 (712)
|..+..++..|..+....+...... ...+++.|...+. +.+..++..|+.++..|+..-...-.... ..+++.++..
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll~~ 106 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLLEK 106 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHH
Confidence 5899999999999987633321100 1234677888884 89999999999999999953222212222 2378999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cch-hhhhhhcCCh
Q 005144 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDC-KVHIVQRGAV 335 (712)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~l~~~~~l 335 (712)
+.+.++.+|..+..+|.++..... . ..+++.+...+.+.++.++..++..|..+.... +.. ..... ..++
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~ 178 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLT 178 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHH
Confidence 999999999999999999976432 1 125778888999899999999999999965432 221 11222 3678
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 336 RPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
|.|..++.+.++++|..|..+++.++.
T Consensus 179 p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 179 TSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887
No 102
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.47 E-value=1.8e-07 Score=74.43 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=63.5
Q ss_pred EEEEe-cCccchhhHHHhhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------CCCCh
Q 005144 547 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 612 (712)
Q Consensus 547 ~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~ 612 (712)
+.+.. +|..|.+++.+ +..|++|+.|+.+ .+.|+..+.|+|++++..+++.+++|+|... .+++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 44444 78999999997 7899999999975 3467667899999999999999999998753 24778
Q ss_pred hhHHHHHHHHHHhCh
Q 005144 613 DIAQDLLRAADQYLL 627 (712)
Q Consensus 613 ~~~~~l~~~A~~~~~ 627 (712)
+.+.+|+.||+|+++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 103
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.46 E-value=5.6e-06 Score=92.32 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
-.+-.|+.+|+-|- .+.+ +++..|...|...... ...++..|+..|+.+..+... . .+
T Consensus 373 ~~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~-----~~~ik~GAllaLGli~ag~~~--~------~~ 431 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRAS-----SRFIKGGSLYGLGLIYAGFGR--D------TT 431 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCS-----CHHHHHHHHHHHHHHTTTTTH--H------HH
T ss_pred HHHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCC-----cHHHHHHHHHHHHHhcCCCcH--H------HH
Confidence 34556666666665 3322 2344444455421000 127788888888888764432 1 35
Q ss_pred HHHHHhhcCCC--------HHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc--C
Q 005144 210 PPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH--S 279 (712)
Q Consensus 210 ~~L~~lL~~~~--------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~--~ 279 (712)
..|...+.+++ +.++..|+..|+....+... ..+++.|..++.+++..++..|+.+|+.+.. +
T Consensus 432 ~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg 504 (963)
T 4ady_A 432 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG 504 (963)
T ss_dssp HHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC
Confidence 67777776654 66888888888876543221 1246778888888787788888888887743 3
Q ss_pred ChhHHHHHHHcCChHHHHHhh-ccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHH
Q 005144 280 SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 357 (712)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L 357 (712)
+.+ .+..|+..+ .+.+..+++.++.+|+.+..+.++ .++.+++.| .+.++.+|..++.++
T Consensus 505 n~~---------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 505 KPE---------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CHH---------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333 233444444 355788999999999998765544 356666676 457888888887777
Q ss_pred HHHHHHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccc-CcchhHHHHhhCccccccccchhhhhhhhHHHHHHHH
Q 005144 358 GRLAQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 435 (712)
Q Consensus 358 ~~l~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~ 435 (712)
+--.. ...+...+..|+..+ .+.+..+|..|+.+|+.++. +++.
T Consensus 567 glAya-GTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~--------------------------------- 612 (963)
T 4ady_A 567 ALAYA-GTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT--------------------------------- 612 (963)
T ss_dssp HHHTT-TSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS---------------------------------
T ss_pred HHHhc-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH---------------------------------
Confidence 53111 000111234344444 56678899999999998754 3322
Q ss_pred HHHhhhhhhHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 436 LEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 436 l~~~~~~~~~~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++.++. ++.+.++.+|..|+.+|+.++.+..... ++..|..+..+++..|+..|+.+|..+...
T Consensus 613 ---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 613 ---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 233444 3456799999999999999976554433 367889999999999999999999988865
Q ss_pred c
Q 005144 515 A 515 (712)
Q Consensus 515 ~ 515 (712)
.
T Consensus 678 t 678 (963)
T 4ady_A 678 Q 678 (963)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.42 E-value=1.1e-06 Score=78.11 Aligned_cols=111 Identities=17% Similarity=0.274 Sum_probs=84.2
Q ss_pred cEEEEe-cCccchhhHHHhhhcCHHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCC-------------
Q 005144 546 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS------------- 607 (712)
Q Consensus 546 D~~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------- 607 (712)
-+.+.. +|..|.+++.+ +..|.+++.|+..... +.....|+|++++..+++.+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 355554 68999999998 6689999999975432 2334689999999999999999998854
Q ss_pred ------------CCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhc---CChhhHHHHHHHHHHc
Q 005144 608 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD---ISLENVSSMYELSEAF 657 (712)
Q Consensus 608 ------------~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~---~~~~~~~~~~~~a~~~ 657 (712)
+.++...+.+|+.||+||+|..|...|+..+... .+++....+|.+...+
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~ 151 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 151 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCC
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 2356688999999999999999999999888654 4566666666554333
No 105
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=2.7e-07 Score=75.27 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=51.9
Q ss_pred HhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHHH
Q 005144 639 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 696 (712)
Q Consensus 639 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l~~ 696 (712)
.+.++++||+.++.+|+.|+++.|.+.|.+|+.+||.++.++++|.+|+.+.+.++++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 4568999999999999999999999999999999999999999999997776555443
No 106
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=6.4e-08 Score=83.44 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=90.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (712)
...++.++.+|.++++.++..|+++|..+.. ..++.|+.+++++++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~--- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER--- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH---
Confidence 4567889999999999999988888886642 126888999999999999999999999842 21
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005144 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 359 (712)
.++.|+.++.+.++.+|..++++|+++.. ...++.|..+++++++.++..+..+|.+
T Consensus 74 ------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 ------AVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888889999999999999999998852 2357888999988899999999988865
No 107
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.6e-06 Score=79.73 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=137.1
Q ss_pred HHHHhhccCChhhHHHHHHHHHH-HhcCCcchhhhhhh-cCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH--H-HHH--
Q 005144 295 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQ--A-GIA-- 366 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~l~~-~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~--~-~~~-- 366 (712)
-+...+.+.++.-|+.++..|.. +..+.+.....-.+ ..++..|...+ ++.+..++..|+.+|+.++. . .-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788899999999999999 87543332210111 24577888888 78999999999999999997 2 111
Q ss_pred --hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhh
Q 005144 367 --HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 444 (712)
Q Consensus 367 --~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 444 (712)
....++.+++.+.++...|+..+..++..++.+.+. ....+.+ ..+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~---~~~~~~l-----------------------------~~l 147 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP---LASSGRN-----------------------------EDM 147 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT---TCTTCTT-----------------------------HHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc---cccCCcH-----------------------------HHH
Confidence 122467788888888899999999999888653211 0000001 125
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcc--cch-hhc-cCchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 445 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RTI-FID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 445 ~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~-l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
++.|+..|++.++.+|..++.+|..++..... ... -.- ...+|.|.+++.++++++|..|..++..+....
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999754432 111 122 577899999999999999999999999988754
No 108
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.27 E-value=0.00026 Score=72.49 Aligned_cols=315 Identities=15% Similarity=0.180 Sum_probs=188.2
Q ss_pred hcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CCh---hhHHHHHhCCChHHHHHHHhcccCCccccc
Q 005144 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP---EHQQLIVDNGALSHLVNLLKRHMDSNCSRA 177 (712)
Q Consensus 102 ~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~ 177 (712)
+..++..++++|...... ++.+..+..+..+. .+| .....+.+...... .++..... ++
T Consensus 75 ~~~~~~~~l~lL~~~~~~-----------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~--~l~~~~~~----~d 137 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNE-----------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE--QLFDVSLK----GD 137 (480)
T ss_dssp SSTTHHHHHHHHHSCCCH-----------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH--HHHHHCSC----SS
T ss_pred CchHHHHHHHHHhhcChH-----------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch--HHHHHHhc----cc
Confidence 345678899999876552 78888888998888 655 33333333322211 12221111 11
Q ss_pred hhHHHHHHHHHHHHHhhcCCcchhHHHhcCChH--HHHHhhcC-CCHHHHHHHHHHHHHhhcCChhcHHHHHhCC--CHH
Q 005144 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIP--PLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALP 252 (712)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~l~ 252 (712)
++-.+..+..++..++.........+ ...+. -+...|.+ ++...+..++.+|..|.. .+..+..+.+.+ .++
T Consensus 138 d~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~ 214 (480)
T 1ho8_A 138 FQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMP 214 (480)
T ss_dssp HHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhH
Confidence 22444555555556553222211111 11112 24444544 234556678888888885 677777776543 355
Q ss_pred HHHHhhc----C-----------C--CHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh--HHHHHhhcc-CChhhHHHHH
Q 005144 253 TLILMLR----S-----------E--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL--QPVIGLLSS-CCSESQREAA 312 (712)
Q Consensus 253 ~L~~ll~----~-----------~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l--~~L~~lL~~-~~~~v~~~a~ 312 (712)
.++.+++ + + ...++.+++.++|-|+.. ++....+...+.. +.|+.+++. ..+.+.+-+.
T Consensus 215 ~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 215 TLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 5544332 1 1 245689999999999865 5566666655543 556666764 4688999999
Q ss_pred HHHHHHhcCCcchh----h-hhhhcCChHHHHHHhC-C--CCHHHHHHHHHHHHHHHH----------------------
Q 005144 313 LLLGQFAATDSDCK----V-HIVQRGAVRPLIEMLQ-S--PDVQLREMSAFALGRLAQ---------------------- 362 (712)
Q Consensus 313 ~~L~~l~~~~~~~~----~-~l~~~~~l~~L~~ll~-~--~~~~v~~~a~~~L~~l~~---------------------- 362 (712)
.++.|+....+... . .++..++++ +++.|. . .|+++.+..-.....|..
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 99999987543211 1 233344544 555552 2 677777654444333333
Q ss_pred ------HHHHhc----------CChHHHHHhhc----------cCChhHHHHHHHHHHhccc-CcchhHHHHhhCccccc
Q 005144 363 ------AGIAHN----------GGLVPLLKLLD----------SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKL 415 (712)
Q Consensus 363 ------~~~~~~----------~~i~~L~~ll~----------~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L 415 (712)
..++.. ..+..|+++|. +.++.+..-||.=|+.+.+ +|+.+..+-+.|+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~---- 448 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG---- 448 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH----
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc----
Confidence 122222 23567888885 3468888889999999877 4666665555553
Q ss_pred cccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 005144 416 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 471 (712)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~ 471 (712)
=..+..+|.+.|++|+.+|+.+++.+.
T Consensus 449 -----------------------------K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 449 -----------------------------KADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp -----------------------------HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345778999999999999999998773
No 109
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.23 E-value=8.4e-08 Score=82.68 Aligned_cols=121 Identities=20% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhh
Q 005144 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (712)
Q Consensus 248 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (712)
...++.+..+|+++++.+|..|+++|+++.. + .++.|+.+|.+.++.+|..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 4567889999999999999999999988732 1 25889999999999999999999998752
Q ss_pred hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
...++.|+.+++++++.+|..++++|+++.. ..+++.|..+++++++.++..|+.+|.++
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2347899999999999999999999998653 34578899999999999999999998764
No 110
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.7e-05 Score=76.36 Aligned_cols=183 Identities=8% Similarity=0.065 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHH-HhhcCCcchhHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh-hcHH-HHHhCCCHHH
Q 005144 179 NSVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND-ENKN-QIVECNALPT 253 (712)
Q Consensus 179 ~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~L~~~~~-~~~~-~~~~~~~l~~ 253 (712)
|.-+..++..|.. ++.+.+.......+ ...+..|...+ .+.+..++..|+.+|..|+.+-. ..-. .... .+++.
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ 108 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHH
Confidence 5888889999999 87544432210000 13466778888 78899999999999999995332 1111 2222 26889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcch---hhhhh
Q 005144 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIV 330 (712)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~ 330 (712)
++..+++..+.|+..+..++..++...+.......-..+++.|+..|.+.++.++..++.+|..++...+.. ....+
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l 188 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 999999999999999999888887532110000000125677888888889999999999999988644321 11222
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 331 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
...++|.|.+++.+.++.+|..|..++..++.
T Consensus 189 ~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 25788999999999999999999999999886
No 111
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.08 E-value=5.8e-06 Score=67.51 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=63.0
Q ss_pred EEEE-ecCccchhhHHHhhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------CCCCh
Q 005144 547 VTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 612 (712)
Q Consensus 547 ~~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~ 612 (712)
+.+. .+|..|.+++.+ +..|..++.|+.+ .+.|.....|+|++++..+++.+++|+|... .+++.
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 97 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 97 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence 5555 378999999995 6699999999974 3456666799999999999999999998753 24788
Q ss_pred hhHHHHHHHHHHhCh
Q 005144 613 DIAQDLLRAADQYLL 627 (712)
Q Consensus 613 ~~~~~l~~~A~~~~~ 627 (712)
..+.+|+.||+||++
T Consensus 98 ~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 98 EIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999999975
No 112
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.07 E-value=1.7e-05 Score=64.57 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=76.8
Q ss_pred cEEEEecCccchhhHHHhhhcC-HHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhh-HHHHH
Q 005144 546 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDLL 619 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~l~ 619 (712)
-|.+.++|..|...+..|+... .+|..||++++. ....+.+-+ |-+|..|+.+|.|+.+|.+.++.+. ...++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 4678899999999999999775 478889876532 123456666 6799999999999999999875543 57899
Q ss_pred HHHHHhChHhHHHHHHHHHHh
Q 005144 620 RAADQYLLEGLKRLCEYTIAQ 640 (712)
Q Consensus 620 ~~A~~~~~~~l~~~c~~~l~~ 640 (712)
+-|++|+++.|++.|++.|.+
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999998865
No 113
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.06 E-value=0.00016 Score=84.61 Aligned_cols=378 Identities=11% Similarity=0.026 Sum_probs=206.6
Q ss_pred HhHHHHHHHHHHHHHhhc------------ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHH
Q 005144 75 ADRAAAKRATHVLAELAK------------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (712)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~------------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (712)
.+..+|..|+-.|.|... .++.+..+ +. .++..+.+.+. .+|.+++.+++.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-k~----~ll~~l~~~~~------------~ir~~l~~~ia~ 111 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-KK----EIVPLMISLPN------------NLQVQIGEAISS 111 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-HH----HHHHHHHHSCH------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-HH----HHHHHHHhCCH------------HHHHHHHHHHHH
Confidence 356688899999998763 12333322 22 34444433334 899999999999
Q ss_pred hc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC------cchhHH--HhcCChHHH
Q 005144 143 LA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRV--RMEGGIPPL 212 (712)
Q Consensus 143 l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~--~~~~~i~~L 212 (712)
|+ +-|+ .-.+.++.|++.+.+.+. ..+..++.++..++.... +.+..+ .-....+.+
T Consensus 112 ia~~d~p~-----~Wp~ll~~L~~~l~s~~~--------~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~l 178 (960)
T 1wa5_C 112 IADSDFPD-----RWPTLLSDLASRLSNDDM--------VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178 (960)
T ss_dssp HHHHHSTT-----TCTTHHHHHHTTCCSSCT--------THHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcc-----chhHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 98 2331 124567888888766543 566788999999986332 111111 111223333
Q ss_pred HHh-------hcCCCH---------HHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHHHhhcCC------C-------
Q 005144 213 VEL-------LEFTDT---------KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSE------D------- 262 (712)
Q Consensus 213 ~~l-------L~~~~~---------~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~ll~~~------~------- 262 (712)
+.+ +..+.. ++...++.++++++.. .+....... ...++.+..++... +
T Consensus 179 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~ 257 (960)
T 1wa5_C 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHAS 257 (960)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCccccccc
Confidence 332 443321 3344577777776531 121111100 12234455555321 1
Q ss_pred --HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-----cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCCh
Q 005144 263 --SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (712)
Q Consensus 263 --~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l 335 (712)
..++..++.++..+....++.-.... ..+++..+..+. ..+..++..++..+..++.. +..+..+...+.+
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l 335 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHH
Confidence 24678888888888755444221111 234555566664 23567888888888887642 2222211111233
Q ss_pred HHHH-----HHhC---------CCC--------------HHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhc------
Q 005144 336 RPLI-----EMLQ---------SPD--------------VQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLD------ 379 (712)
Q Consensus 336 ~~L~-----~ll~---------~~~--------------~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~------ 379 (712)
+.++ ..+. ..+ ...|..|..+|..++. ....-...++.+.+.+.
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCc
Confidence 3333 2321 011 1356778888888887 21111122333334444
Q ss_pred cCChhHHHHHHHHHHhcccCcchhHHHHhhCcc--ccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhh--
Q 005144 380 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV--QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-- 455 (712)
Q Consensus 380 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i--~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~-- 455 (712)
+.++..++.|+.+++.++..-.... .+.- ..+.+. ..-+...+++.+.+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~----~~~~~~~~~~~l----------------------~~~l~~~v~p~l~~~~~ 469 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITN----AGVSSTNNLLNV----------------------VDFFTKEIAPDLTSNNI 469 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBT----TBCCCBCTTCCH----------------------HHHHHHHTHHHHHCSSC
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc----CCcccccccccH----------------------HHHHHHHhHHHhcCCCC
Confidence 5678899999999999975321110 0000 000000 000122345556666
Q ss_pred -hhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 456 -EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 456 -~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
++-+|..|+++++.++..-. .. .-...++.+++.+.++++.|+.+|+.++.++...
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~-~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLT-KA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSC-HH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCceehHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999999977531 11 1234567888888888899999999999998874
No 114
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.89 E-value=0.0009 Score=78.29 Aligned_cols=442 Identities=10% Similarity=0.012 Sum_probs=224.8
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhcCh-------hhHHHHH--hcCCHHHHHhh-------hcCCCCCcccc
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-------EVVNWIV--EGGAVPALVKH-------LQAPPTSEADR 123 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~--~~g~i~~L~~l-------L~~~~~~~~~~ 123 (712)
|.+++.|.+.++++ +...+..++.+|..++..- +.+..+. -....+.++++ +..+......
T Consensus 122 p~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~- 198 (960)
T 1wa5_C 122 PTLLSDLASRLSND--DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS- 198 (960)
T ss_dssp TTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH-
T ss_pred hHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence 34555555555443 4446778888888887621 1222110 11224444444 3332210000
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccC-------CccccchhHHHHHHHHHHHHHhh
Q 005144 124 NLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMD-------SNCSRAVNSVIRRAADAITNLAH 194 (712)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~-------~~~~~~~~~v~~~a~~~L~~l~~ 194 (712)
...-.++...+++++.++. +.++.-.... ...++.+..+|....+ .......+.++..++.+|..+..
T Consensus 199 --~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~ 275 (960)
T 1wa5_C 199 --LNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTT 275 (960)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 0000133445777777765 3333211100 1224555666644211 01111224567778888888775
Q ss_pred cCCcchhHHHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHH-----HHHHhhc----C
Q 005144 195 ENSSIKTRVRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP-----TLILMLR----S 260 (712)
Q Consensus 195 ~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~-----~L~~ll~----~ 260 (712)
..+..-. -....+++..+..+. ..++.++..++..+..++. .+..+..+...+.++ .++..+. +
T Consensus 276 ~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d 353 (960)
T 1wa5_C 276 RYEDVFG-PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLREED 353 (960)
T ss_dssp HCHHHHH-HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGG
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHH
Confidence 4432111 111234445555553 3457889999999998874 322221111001222 2233321 0
Q ss_pred -----CC--------------HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc------cCChhhHHHHHHHH
Q 005144 261 -----ED--------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLL 315 (712)
Q Consensus 261 -----~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~L 315 (712)
++ ...|..|..+|..++...++ .+. ..+++.+.+.+. +.++..++.|..++
T Consensus 354 ~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~al 429 (960)
T 1wa5_C 354 VELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLF 429 (960)
T ss_dssp TTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 11 24677788888888755432 111 123445555555 45788999999999
Q ss_pred HHHhcCCcchhhhhh----hcCChHH----HHHHhCCC---CHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCC
Q 005144 316 GQFAATDSDCKVHIV----QRGAVRP----LIEMLQSP---DVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKN 382 (712)
Q Consensus 316 ~~l~~~~~~~~~~l~----~~~~l~~----L~~ll~~~---~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~ 382 (712)
+.++.+......... ...+.+. ++..+.++ ++.+|..++++++.++. ..-.-...++.+++.+.+.+
T Consensus 430 gaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~ 509 (960)
T 1wa5_C 430 TALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE 509 (960)
T ss_dssp HHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC
Confidence 999854211110000 0022232 33444555 89999999999999887 11122335667777888888
Q ss_pred hhHHHHHHHHHHhcccCcc---------hhHHHHhhCccccccccchhh-hh---------hhhHHHHHHHHHHHhh---
Q 005144 383 GSLQHNAAFALYGLADNED---------NVADFIRVGGVQKLQDGEFIV-QA---------TKDCVAKTLKRLEEKI--- 440 (712)
Q Consensus 383 ~~v~~~a~~~L~~l~~~~~---------~~~~l~~~~~i~~L~~~~~~~-~~---------~~~~~~~~l~~l~~~~--- 440 (712)
..|+..|+.+|.+++...+ ....+. ..++.+++..+.. .. ..+.+...+..+....
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~ 587 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 9999999999999876421 111111 1222222222210 11 2233333333332222
Q ss_pred ----hhhhHHHHHHHHhh-----hhhhHHHHHHHHHHHhcCCCc-ccchhhccCchHHHHHHhcCCCchhhhhhHHHHHh
Q 005144 441 ----HGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 510 (712)
Q Consensus 441 ----~~~~~~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 510 (712)
-..+++.|...+.. .++.....++.+|+.++.... ....-.....+|.+...+.....+...++...+..
T Consensus 588 ~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 23445555555543 255666667777777755411 11222345567888888887777777778887777
Q ss_pred hhccc
Q 005144 511 LANKA 515 (712)
Q Consensus 511 L~~~~ 515 (712)
+....
T Consensus 668 l~~~~ 672 (960)
T 1wa5_C 668 VVEQS 672 (960)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 77543
No 115
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.80 E-value=0.00088 Score=65.11 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=119.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.+++.|.+++...++.++.-|..+-..+......++..+++..|+......+...+..++.++.+|.......-..+-..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 45566667778888889999998554678888999999999999999999999999999999999976644332333356
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhc----------CChHHHHHHhC---CCCHHHHHHHHHHH
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAFAL 357 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------~~l~~L~~ll~---~~~~~v~~~a~~~L 357 (712)
.++..+..++.+....+.+.|...|..++..++.+...+.+. .-++.|+.+|+ +.+.+++.++...+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 688899999998888999999999999987665554443332 23788999997 67899998887766
Q ss_pred HHHHH
Q 005144 358 GRLAQ 362 (712)
Q Consensus 358 ~~l~~ 362 (712)
..+..
T Consensus 282 N~lL~ 286 (339)
T 3dad_A 282 NKTLA 286 (339)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65554
No 116
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.77 E-value=0.00083 Score=65.30 Aligned_cols=183 Identities=17% Similarity=0.152 Sum_probs=130.9
Q ss_pred HHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005144 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240 (712)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 240 (712)
.++.-|.+.+. +.++.++.-|..+...+......++..+|+..|+......+...+..++.+|.+|.. ...
T Consensus 122 ~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~ 192 (339)
T 3dad_A 122 AILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVD 192 (339)
T ss_dssp HHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccc
Confidence 44455555444 667778888888555678888889999999999999999999999999999999985 444
Q ss_pred cHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc----------CChHHHHHhhc---cCChh
Q 005144 241 NKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCSE 306 (712)
Q Consensus 241 ~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------~~l~~L~~lL~---~~~~~ 306 (712)
....++ ....+..+..++.+.+..|.+.|+.+|..++..++.....+.+. .-+..|+.+|. ..+.+
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 443443 45678889999998899999999999999988776544433321 23889999997 56888
Q ss_pred hHHHHHHHHHHHhcCCcch--hhh----hhhcCChHHHHHHhCCC--CHHHHHH
Q 005144 307 SQREAALLLGQFAATDSDC--KVH----IVQRGAVRPLIEMLQSP--DVQLREM 352 (712)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~--~~~----l~~~~~l~~L~~ll~~~--~~~v~~~ 352 (712)
++..+...+-.+..+-++. +.. +-+.|+-..+...++.. +++.++.
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8888777666555433321 222 23344445566667553 6666553
No 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.71 E-value=0.0023 Score=72.55 Aligned_cols=285 Identities=13% Similarity=0.114 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--cHHHHHhCCCHHHHHHhhcC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~l~~L~~ll~~ 260 (712)
..++..+..+..+...... ...+.+..+.+.+.+.... +.|+.++..|+..... ..+.+. -+.++.++..+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~d 106 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEHD--VPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGN 106 (986)
T ss_dssp HHHHHHHHHHHTSSCSSSS--CCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccccc--cchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcC
Confidence 4455566666543322111 1125667788888765444 8999999999953322 222222 2578999999999
Q ss_pred CCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHH
Q 005144 261 EDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 338 (712)
....||..|-.++..+... ++... ..++|.|+..|.+. .+..+..|+.++..++...++... ..-..++|.+
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~-~~~~~~~p~~ 180 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA-LRMPELIPVL 180 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH-Hhccchhcch
Confidence 8899998888777777543 33322 23688899988765 699999999999999864433322 2225688999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCcccccc
Q 005144 339 IEMLQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ 416 (712)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~ 416 (712)
...+.+..++|+..|..++..++. ..---...++.|++.+.+++. .-.++..|+... .+....
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~t----------fv~~v~ 245 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE-----VPETVHLLGATT----------FVAEVT 245 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCC----------CCSCCC
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh-----hHHHHHHhhcCe----------eEeeec
Confidence 999999999999999999988887 111113457888888876643 223444444321 000000
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchh--hccCchHHHHHHhc
Q 005144 417 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF--IDGGGLELLLGLLG 494 (712)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l--~~~~~~~~L~~ll~ 494 (712)
. .. -.-+.|.|..-|......+++.++-++.|++.-.++.... .-...+|-+....+
T Consensus 246 ---------~----~~--------l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 246 ---------P----AT--------LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp ---------H----HH--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred ---------c----hh--------HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 0 00 0113444555566668899999999999998755533221 23455677776665
Q ss_pred C-CCchhhhhhHHHHHhhhcc
Q 005144 495 S-TNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 495 ~-~~~~~~~~a~~~L~~L~~~ 514 (712)
. .+|++|..|..++..|.+-
T Consensus 305 ~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 305 TIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TCCSHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 4 8999999999999988554
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.68 E-value=0.0038 Score=70.85 Aligned_cols=246 Identities=19% Similarity=0.186 Sum_probs=168.4
Q ss_pred HHHHHHHHHhhcC----hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHH
Q 005144 81 KRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIV 154 (712)
Q Consensus 81 ~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~ 154 (712)
+.|+..+..++.. +..--.+ -+.+|.++..+.+... .||..|..++..+. -+|+....
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~------------~v~~aa~~~~~~~~~~~~~~a~~~-- 133 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDK------------EIQSVASETLISIVNAVNPVAIKA-- 133 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSH------------HHHHHHHHHHHHHHHHSCGGGHHH--
T ss_pred HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCch------------HHHHHHHHHHHHHHHhCCHHHHHH--
Confidence 7777888888752 2222222 2578888888877666 89998888888887 45544322
Q ss_pred hCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (712)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 234 (712)
.++.|+..|..... |.....++.++..++...+ .+-...-...+|.+...+.+..++|...|..++..+
T Consensus 134 ---~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 134 ---LLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp ---HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 47888888865543 6888999999999997543 333334457889999999999999999999999988
Q ss_pred hcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 005144 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (712)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (712)
|. --.|++. ...+|.|++.+.+++. ...++..|+.-+...+.....+ +=..|.|..-|......+++.++-+
T Consensus 203 ~~-~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~ 274 (986)
T 2iw3_A 203 TE-TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVI 274 (986)
T ss_dssp GG-GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred Hh-cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEE
Confidence 85 2222211 2468999999988754 4555666655543322211111 1146777777777788999999999
Q ss_pred HHHHhcCC--cchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Q 005144 315 LGQFAATD--SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 315 L~~l~~~~--~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (712)
+.|+|.-- +.....++ ...+|.+.+.... .+|++|+.+..++..|..
T Consensus 275 ~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 275 IDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred EcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99999632 22222222 5566666666643 899999999999988876
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.30 E-value=0.012 Score=68.32 Aligned_cols=313 Identities=11% Similarity=0.081 Sum_probs=165.8
Q ss_pred HHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHH-hhhcCCCCCccccCCCcccHHHHH
Q 005144 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 56 ~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
....+.+++.+...+... .+++....+++++.....--+ ...+.+.+.++.+. .+|.. + +++.
T Consensus 189 ~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~--~------------~~r~ 252 (1023)
T 4hat_C 189 SKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTS--P------------DTRA 252 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHS--H------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCC--H------------HHHH
Confidence 344555666655555432 344567778888888777321 23466788899999 88853 2 8999
Q ss_pred HHHHHHHHhcC-C---h--hhHHHHHhC--CChHHH-----------HHHHhcccCCccccchhHHHHHHHHHHHHHhhc
Q 005144 135 GSAFALGLLAV-K---P--EHQQLIVDN--GALSHL-----------VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (712)
Q Consensus 135 ~a~~~L~~l~~-~---~--~~~~~~~~~--~~l~~L-----------~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 195 (712)
.|+.+|..+.. . + .....+... +.+..+ ...+...+. .+.+.....+..+..+...
T Consensus 253 ~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~-----~D~e~~~~l~~l~~~~~e~ 327 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYLAR 327 (1023)
T ss_dssp HHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCT-----THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcccc-----chHHHHHHHHHHHHHHHHH
Confidence 99999999984 2 2 122111100 111111 011111110 1236666667777666542
Q ss_pred CCc-------chhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhcHHHHHh--CCCHHHHHHhhcCCC-
Q 005144 196 NSS-------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVE--CNALPTLILMLRSED- 262 (712)
Q Consensus 196 ~~~-------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~---~~~~~~~~~~--~~~l~~L~~ll~~~~- 262 (712)
+.. .+..+ ..++..|+..-..++.++...++.....++.+ .+..+..+.. ..+++.++.-+.-+.
T Consensus 328 ~~~li~~~~~~~~~l--~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e 405 (1023)
T 4hat_C 328 NRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE 405 (1023)
T ss_dssp HGGGGTSCGGGHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTT
T ss_pred HHHHHhCCcchhHHH--HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 221 11111 11223444555567888888888777777631 0001111100 124555554443321
Q ss_pred ------------------H-------HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHH
Q 005144 263 ------------------S-------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLL 315 (712)
Q Consensus 263 ------------------~-------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L 315 (712)
. ..| .++..+.++.. ++..+. .++.+.+.+.+ .++..++.+++++
T Consensus 406 ~~ive~d~~~~~~e~~~d~d~~~~f~~~R-d~L~~l~~l~~--~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~ 477 (1023)
T 4hat_C 406 VLVVENDEGEIVREFVKESDTIQLYKSER-EVLVYLTHLNV--IDTEEI-----MISKLARQIDGSEWSWHNINTLSWAI 477 (1023)
T ss_dssp CCEEECTTSCEEECSSCCGGGHHHHHHHH-HHHHHHHHHCH--HHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHhccchHHHHHHHHHH-HHHHHHhccCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 0 112 33333333321 111111 22333333333 5799999999999
Q ss_pred HHHhcCCcchhhhhhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHhhccCChhHH
Q 005144 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQAGIAHN----GGLVPLLKLLDSKNGSLQ 386 (712)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~----~~i~~L~~ll~~~~~~v~ 386 (712)
+.++.+..+....-.-..+++.|+.++.. ....++..++++++..+.-.-... ..+..|++.++..++.++
T Consensus 478 gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~ 557 (1023)
T 4hat_C 478 GSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQ 557 (1023)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHH
Confidence 99986543332222224567778887742 334566788899998888111111 223334444566778999
Q ss_pred HHHHHHHHhcccC
Q 005144 387 HNAAFALYGLADN 399 (712)
Q Consensus 387 ~~a~~~L~~l~~~ 399 (712)
..|++++.+|+..
T Consensus 558 ~~A~~al~~l~~~ 570 (1023)
T 4hat_C 558 DMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 120
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.27 E-value=0.017 Score=67.59 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=88.0
Q ss_pred ccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHHHH--H--HHHhcCChHH
Q 005144 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQ--A--GIAHNGGLVP 373 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~--~--~~~~~~~i~~ 373 (712)
.+.++..++.++++++.++.+-.... ...++.++..+ .++++.++..++++++.++. . .-.-...++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45578899999999999986543321 23344455444 34678999999999999988 1 1122466777
Q ss_pred HHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 005144 374 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 453 (712)
Q Consensus 374 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~ 453 (712)
++..+++ +.++..|+.++.+++.... .. ..+. -..++..+..++.
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~--~~-----l~p~--------------------------~~~il~~l~~~l~ 578 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECK--YD-----LPPY--------------------------AANIVAVSQDVLM 578 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTG--GG-----CTTT--------------------------HHHHHHHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHH--HH-----HHhh--------------------------HHHHHHHHHHHhc
Confidence 7777754 8999999999999985311 11 1111 1224555666666
Q ss_pred hh--hhhHHHHHHHHHHHhcCC
Q 005144 454 VA--EKGVQRRVALALAHLCSP 473 (712)
Q Consensus 454 ~~--~~~v~~~a~~~L~~l~~~ 473 (712)
.. +...+..+..+++.++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHhc
Confidence 43 457788888888888653
No 121
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.23 E-value=0.043 Score=64.23 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
+..++.++.+++.++....... ...++.++.++..-...+ ....++..++++++.++..-..... .-..++
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d---~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl 548 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEK---LNVKLLGTALETMGSYCNWLMENPA--YIPPAI 548 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTT---SCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccc---cCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 3789999999999994322111 134555555442221100 0128899999999998853221111 112355
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hHHHH
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKKE 286 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~~~~ 286 (712)
+.++..+ + +.++..|+.++.+++........... ..++..+..++.. .+...+..+..+++.++...+ +....
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6666667 2 67899999999999953322211122 2356666677776 357888889999998876432 22222
Q ss_pred HHHcCChHHHHHhh----ccC--ChhhHHHHHHHHHHHhcC-----Cc--c--------hhhhhhhcCChHHHHHHhCC-
Q 005144 287 VLAAGALQPVIGLL----SSC--CSESQREAALLLGQFAAT-----DS--D--------CKVHIVQRGAVRPLIEMLQS- 344 (712)
Q Consensus 287 ~~~~~~l~~L~~lL----~~~--~~~v~~~a~~~L~~l~~~-----~~--~--------~~~~l~~~~~l~~L~~ll~~- 344 (712)
.. ...++.++..+ ... +.+.+.....++..++.. .. . ....-....+++.+..++..
T Consensus 625 ~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 625 YL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence 11 22334444433 322 333334444444443311 00 0 00111224677888887743
Q ss_pred -CCHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHhh
Q 005144 345 -PDVQLREMSAFALGRLAQAG-IAHNGGLVPLLKLL 378 (712)
Q Consensus 345 -~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~L~~ll 378 (712)
.++.+.+.++++++.++... -.-...++.+++.+
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l 739 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFI 739 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 47899999999999988711 00122355555555
No 122
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.03 E-value=0.0087 Score=56.94 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=123.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHh----hcCCCHHHHHHHHHHHHHhhcC----Ch
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM----LRSEDSAIHYEAVGVIGNLVHS----SP 281 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l----l~~~~~~v~~~a~~~L~~L~~~----~~ 281 (712)
+.+...|-+.|..-+..++..|......++ ..+.. .+..++.. +.+.+..+...++.+|..+... ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 456667777788888888888877654322 23222 23444443 3367888888888888776421 00
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005144 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (712)
..... ...-++|.|+.-+.+....+|..+-.++..+....+. ..+++.++..+++.+..+|..++..+..+.
T Consensus 124 ~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 01010 0123689999999988888988888877776542111 235688889999999999999999999998
Q ss_pred H-HHHHhcCCh---HHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 362 Q-AGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 362 ~-~~~~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
. ..+....++ +.+..++.+.|..||..|+.++..+-.
T Consensus 196 ~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 8 332245678 999999999999999999999987744
No 123
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.01 E-value=0.028 Score=65.88 Aligned_cols=410 Identities=10% Similarity=0.045 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCC-----hh-
Q 005144 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-----PE- 148 (712)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-----~~- 148 (712)
+.++.+...++..++.. +.+ .+.++.++..+++++.+ ...++..+..++.+|..++.. +.
T Consensus 99 ~~vr~kl~~~la~i~~~~~p~W------p~~l~~l~~~~~~~~~~------~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 99 KIVLNRLCISLGAYIVHMLGEW------PGAIEEVINTFQNQRMP------NVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHccccc------cHHHHHHHHHHhccccc------cCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 34666666666666652 211 24567777777654210 001225777888888877721 00
Q ss_pred ----hHHHHHhCCChHHHH----HHHhcccCCccccchhHHHHHHHHHHHHHhh--cCCcchhHHHhcCChHHHHHhhc-
Q 005144 149 ----HQQLIVDNGALSHLV----NLLKRHMDSNCSRAVNSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLE- 217 (712)
Q Consensus 149 ----~~~~~~~~~~l~~L~----~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL~- 217 (712)
.++.+.. .++.++ .++............++++..++.++..... .-+.. .....++.+.. |.
T Consensus 167 ~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~ 239 (971)
T 2x1g_F 167 KRVVLRAEIAK--RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVH 239 (971)
T ss_dssp CHHHHHHHHHT--THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhh
Confidence 1122221 244444 4443332211111123678888888876654 22322 23345555655 41
Q ss_pred ---------------CCCHHHHHHHHHHHHHhhcCChh-cHHHHHhCCCHHHHHH-------hhcCCC---HHHHHHHHH
Q 005144 218 ---------------FTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLIL-------MLRSED---SAIHYEAVG 271 (712)
Q Consensus 218 ---------------~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~-------ll~~~~---~~v~~~a~~ 271 (712)
.++++++..|+.++..+....+. ....... ..++.++. .+.+++ .+.....+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~ 318 (971)
T 2x1g_F 240 KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYM 318 (971)
T ss_dssp HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHH
T ss_pred hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHH
Confidence 14578999999999999863221 1111111 12333332 123334 366777777
Q ss_pred HHHHhhcCChhHHH-H---------HHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcCC--------cchhhh
Q 005144 272 VIGNLVHSSPNIKK-E---------VLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATD--------SDCKVH 328 (712)
Q Consensus 272 ~L~~L~~~~~~~~~-~---------~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~--------~~~~~~ 328 (712)
.+..++........ . -.-...++.++.+... .++++...++..+..++... ......
T Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~ 398 (971)
T 2x1g_F 319 LFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWE 398 (971)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 77777643222111 0 0001345555555433 46788999999888776410 011111
Q ss_pred hhh---cCChHHHHHHhCCC--------CH-------HHHHHHHHHHHHHHHHHHHhcCChHH----HHHhhcc-----C
Q 005144 329 IVQ---RGAVRPLIEMLQSP--------DV-------QLREMSAFALGRLAQAGIAHNGGLVP----LLKLLDS-----K 381 (712)
Q Consensus 329 l~~---~~~l~~L~~ll~~~--------~~-------~v~~~a~~~L~~l~~~~~~~~~~i~~----L~~ll~~-----~ 381 (712)
... ..+++.++..+.-+ ++ ..|..+..+|..++. +.....++. +...+.+ .
T Consensus 399 ~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~--~~~~~~l~~~~~~l~~~l~~~~~~~~ 476 (971)
T 2x1g_F 399 YIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYD--VLNDYILEILAAMLDEAIADLQRHPT 476 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhccCCCC
Confidence 111 13445555554211 11 345556666655554 000111222 2233332 6
Q ss_pred ChhHHHHHHHHHHhcccCcch-----hHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhh------hhhhHHHHHH
Q 005144 382 NGSLQHNAAFALYGLADNEDN-----VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI------HGRVLNHLLY 450 (712)
Q Consensus 382 ~~~v~~~a~~~L~~l~~~~~~-----~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~Lv~ 450 (712)
++..++.++.+++.++..... ...++. .+..+... -.....+....+.+.++.... -..+++.++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~--~l~~l~~~-d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR--VLAEIPYE-KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR 553 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHH--HHHHSCTT-TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH--HHHhcCcc-ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 788999999999999764221 122222 11111100 001122333334444433322 3345566666
Q ss_pred HHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCC--CchhhhhhHHHHHhhhcc
Q 005144 451 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANK 514 (712)
Q Consensus 451 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~L~~~ 514 (712)
.| ++.|+..|+.++.+++..-...-.-.-...+..|.+++..+ +...+..+..++..++..
T Consensus 554 ~l---~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 554 GL---NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HH---HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred Hh---ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 66 28899999999999985332111112234556677777763 456777888888887753
No 124
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.01 E-value=0.12 Score=60.53 Aligned_cols=334 Identities=12% Similarity=0.063 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 005144 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (712)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (712)
++..++.++++++.+++.... -....++.++..+..-... ...++..++++++.++..-.... -.-..+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~--~~l~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHP--VMINSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCH--HHHTTT
T ss_pred chHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCH--HHHHHH
Confidence 448899999999999932211 0122345555555322210 12789999999999885322111 233578
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh--CCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hH
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NI 283 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~ 283 (712)
++.++..+.+ +.++..|+.++.+++.... ..+.. ..++..+..++.. -+...+..+..+++.++...+ +.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 8889988854 7899999999999995322 21211 1234445556654 357888888999999876443 32
Q ss_pred HHHHHHcCChHHHHHhhc----c-CChhhHHHHH---HHHHHHhcCCc---c----------------hhh--hhhhcCC
Q 005144 284 KKEVLAAGALQPVIGLLS----S-CCSESQREAA---LLLGQFAATDS---D----------------CKV--HIVQRGA 334 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~----~-~~~~v~~~a~---~~L~~l~~~~~---~----------------~~~--~l~~~~~ 334 (712)
..... ..+++.+...+. . .+++.+.... .+|+.+...-. . ... .-....+
T Consensus 606 ~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 606 ILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 22222 234444444443 2 2444444332 33333332100 0 001 1122345
Q ss_pred hHHHHHHhC--CCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhh----cc-CChhHHHHHHHHHHhcccCcchhH
Q 005144 335 VRPLIEMLQ--SPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLL----DS-KNGSLQHNAAFALYGLADNEDNVA 404 (712)
Q Consensus 335 l~~L~~ll~--~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll----~~-~~~~v~~~a~~~L~~l~~~~~~~~ 404 (712)
++.+..++. ..++.+.+.++.++..++. ..+ ...++.++..+ .. ..+.+.......+..+...+....
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence 566666653 2567888888888888765 111 12244444433 11 222222222222221111110000
Q ss_pred HHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhh---hhhhHHHHHHHHHHHhcCCCcccchhh
Q 005144 405 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPDDQRTIFI 481 (712)
Q Consensus 405 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~ 481 (712)
.+ ...+ ...+..++.++.. ..|+++......+..+....... +.
T Consensus 763 ~~-----------------------~~~l--------~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~ 809 (963)
T 2x19_B 763 PI-----------------------EALF--------LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FL 809 (963)
T ss_dssp HH-----------------------HHHH--------HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GG
T ss_pred HH-----------------------HHHH--------HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--Hc
Confidence 00 0000 1123334444442 35888888888888876433321 11
Q ss_pred ccC-----chHHHHHHhcCCCchhhhhhHHHHHhhhcc
Q 005144 482 DGG-----GLELLLGLLGSTNPKQQLDGAVALFKLANK 514 (712)
Q Consensus 482 ~~~-----~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 514 (712)
... .++.+...+...+..+...+...+..+...
T Consensus 810 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 810 CERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 122 344556667788889999999999998865
No 125
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.013 Score=57.13 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=124.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcH--HHHH--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--
Q 005144 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV--ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-- 282 (712)
Q Consensus 209 i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~--~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-- 282 (712)
+| |-+-|.+.+...|..++..|..+....+... .... -....+.+-..+.+.+..+...++.++..++.....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6688899999999999999988775332211 1111 123466777888899999999999999888653211
Q ss_pred ---HHHHHHHcCChHHHHHh-hccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005144 283 ---IKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (712)
Q Consensus 283 ---~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 358 (712)
......-..+++.|+.- +.+....++..+..++..++...... ..+++.+...+.+.+|.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11112223456777764 67777888888888887776432111 113466777888999999999999998
Q ss_pred HHHHHH-H-------HhcCChHHHHHhhccCChhHHHHHHHHHHhcccC
Q 005144 359 RLAQAG-I-------AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 359 ~l~~~~-~-------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 399 (712)
.+.... . .-...++.+..++.+.++.||..|..++..+-+.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 887711 0 0112344567778999999999999999888543
No 126
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.97 E-value=0.001 Score=63.04 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (712)
.+..++.++++.|+..++.. +. .+.+..+++++++.||..++.. +
T Consensus 126 ~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~---l-------------- 170 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---L-------------- 170 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---S--------------
T ss_pred HHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc---C--------------
Confidence 35556677778888777662 21 1234566777888888877764 1
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 005144 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGG 370 (712)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (712)
..+.+..++.+.++.||..++..+ ..+.|..++.+.++.||..++..+.
T Consensus 171 -~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------ 219 (244)
T 1lrv_A 171 -PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------------ 219 (244)
T ss_dssp -CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------------
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------------
Confidence 113455677788888888877642 1256777788888888888877653
Q ss_pred hHHHHHhhccCChhHHHHHHHHH
Q 005144 371 LVPLLKLLDSKNGSLQHNAAFAL 393 (712)
Q Consensus 371 i~~L~~ll~~~~~~v~~~a~~~L 393 (712)
.+.|..+ .++++.|+..+...|
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3555555 778888888776544
No 127
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.88 E-value=0.0015 Score=58.57 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=76.2
Q ss_pred cccEEEEecCccchhhHHHhhhcC-HHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCCCCCChhh-HHH
Q 005144 544 LSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQD 617 (712)
Q Consensus 544 ~~D~~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~ 617 (712)
..-|.+.++|..|...+..|.... .+|..||++.+. ....+.+-+ |-++..|+.+|.|+-+|.+.++.+. ...
T Consensus 11 ~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 11 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp CCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred CCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 344778899999999999998664 378888876532 123446666 5699999999999999999876543 468
Q ss_pred HHHHHHHhChHhHHHHHHHHHHh
Q 005144 618 LLRAADQYLLEGLKRLCEYTIAQ 640 (712)
Q Consensus 618 l~~~A~~~~~~~l~~~c~~~l~~ 640 (712)
++.-|++|+++.|...|...+.+
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999999988864
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.87 E-value=0.0014 Score=62.09 Aligned_cols=188 Identities=16% Similarity=0.079 Sum_probs=117.5
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHH-----HHHhhcC--hhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCc
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHV-----LAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~-----L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~ 127 (712)
+....+.++..+... .++.++..++.. |..+..+ +..|......-..+.|..++.+++.
T Consensus 47 ~~~~~p~l~~~ll~d-----~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~--------- 112 (244)
T 1lrv_A 47 FFRNNPHLAVQYLAD-----PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDR--------- 112 (244)
T ss_dssp HHHHCGGGGGGGTTC-----SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCH---------
T ss_pred HHcCCHHHHHHHhcC-----CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCH---------
Confidence 333445555444322 467778877753 3334443 3444444443333455566655554
Q ss_pred ccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC
Q 005144 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (712)
.||..++..+ . ...+..++++++. .++..++.. +
T Consensus 113 ---~VR~~aA~~l---~--------------~~~L~~L~~D~d~--------~VR~~aA~~---l--------------- 146 (244)
T 1lrv_A 113 ---EVRITVADRL---P--------------LEQLEQMAADRDY--------LVRAYVVQR---I--------------- 146 (244)
T ss_dssp ---HHHHHHHHHS---C--------------TGGGGGGTTCSSH--------HHHHHHHHH---S---------------
T ss_pred ---HHHHHHHHhC---C--------------HHHHHHHHcCCCH--------HHHHHHHHh---c---------------
Confidence 7777766632 1 1223344444443 777766652 1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
..+.+..+++++++.|+..++.. +. .+.+..++++++..||..++..+
T Consensus 147 ~~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l-------------- 194 (244)
T 1lrv_A 147 PPGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL-------------- 194 (244)
T ss_dssp CGGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC--------------
T ss_pred CHHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC--------------
Confidence 12345567788999999988775 11 14455788999999999988752
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 005144 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (712)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 357 (712)
..+.|..++.+.++.||..++..+. .+.|..+ +++++.|+..+...|
T Consensus 195 ----~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ----RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ----CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred ----CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1346788899999999999988753 2455556 889999999887654
No 129
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.85 E-value=0.016 Score=67.11 Aligned_cols=316 Identities=12% Similarity=0.076 Sum_probs=171.6
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
++.....|.+.... .++..+..++.+|.....--+ ...++..+.++.+.++|.. + +++..|+.
T Consensus 191 ~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~--~------------~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI--E------------ELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS--H------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC--h------------HHHHHHHH
Confidence 44444445443221 355678899999999887422 2345667788888888865 3 89999999
Q ss_pred HHHHhc---CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHh------hcCCc-----c--hhH
Q 005144 139 ALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA------HENSS-----I--KTR 202 (712)
Q Consensus 139 ~L~~l~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~------~~~~~-----~--~~~ 202 (712)
+|..+. ..++.+..++.. + .+...+..-... ..+.++.+..+..+..++ ...+. . +..
T Consensus 254 cL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 254 TMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 999998 334444333322 1 122222221100 011255444444433322 11220 0 000
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--h----cHH---HHHhCCCHHHHHHhhcCC------C-----
Q 005144 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--E----NKN---QIVECNALPTLILMLRSE------D----- 262 (712)
Q Consensus 203 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~--~----~~~---~~~~~~~l~~L~~ll~~~------~----- 262 (712)
-.-.+.++.++.++.+++.++...++..+..+..... . ... .+. ..+++.++.-++-+ +
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchh
Confidence 1123688899999999998888877777766552100 0 011 111 11344444433321 1
Q ss_pred -----HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc---cCChhhHHHHHHHHHHHhcCCcchhhhh-hh--
Q 005144 263 -----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHI-VQ-- 331 (712)
Q Consensus 263 -----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~-- 331 (712)
.+.|......+..++.-.++......-.-+.+.+.+.+. +.++..++.+..+++.++.+-......+ -.
T Consensus 407 d~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 407 EEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 135555553333333323332222110112222333332 3468889999999999986543322211 01
Q ss_pred --cCChHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhh------ccCChhHHHHHHHHHHhccc
Q 005144 332 --RGAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 332 --~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll------~~~~~~v~~~a~~~L~~l~~ 398 (712)
..+++.+..++. ...+.++..++++++..+.-.......+++++..+ ++++..++..|+.++.+++.
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 123455555554 57899999999999998881112345666666655 34678999999999999975
No 130
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.77 E-value=0.87 Score=52.70 Aligned_cols=408 Identities=13% Similarity=0.049 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHHHHhhc--Chh----hHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CCh
Q 005144 76 DRAAAKRATHVLAELAK--NEE----VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~----~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (712)
+..++..|+.+|.+... +++ .+..+ +..++..+... ..... .+-++.+.+.++..+. .-|
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ll~~l~~~-~~~~~----------~~~IrnKL~~~la~l~~~~~p 123 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMI-RDSVWSYIKEL-SFLDE----------PAYISNAVQHLLTLLFLQLYP 123 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHHHHHHHHHC-CSTTS----------CTHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHHHHHHHHHh-cCCCC----------cHHHHHHHHHHHHHHHHHhCc
Confidence 67788899998888765 233 33333 23334444431 10011 1278999999999888 222
Q ss_pred hhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhc--C-C--c-----c-----hhHHHhc---CCh
Q 005144 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE--N-S--S-----I-----KTRVRME---GGI 209 (712)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~--~-~--~-----~-----~~~~~~~---~~i 209 (712)
. .-.+.++.++.++...+.. ......+.+|..++.+ + . . . ++.+... .++
T Consensus 124 ~-----~Wp~~i~~l~~~~~~~~~~-------~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 124 S-----NWNDFFASLQGVIAASSQS-------EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp T-----TCTTHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred c-----cCchHHHHHHHHhcCCChh-------HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 2 1234566777777654220 2333445555544322 1 0 0 0 1112111 012
Q ss_pred HHHHHhh----cCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--hH
Q 005144 210 PPLVELL----EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NI 283 (712)
Q Consensus 210 ~~L~~lL----~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~~ 283 (712)
+....+| .+.++.++..++.++.....- .....+.+.+.++.+..++.+ ++++..|+.+|..+..... +.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhh
Confidence 2333333 346788999999999988752 234455566788888888865 7899999999999976533 22
Q ss_pred HHHHHHcCChHHHHHhhc--cCChhhHHHHHHHHHHHh------cCCc-----chhhhh--hhcCChHHHHHHhCCCCHH
Q 005144 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFA------ATDS-----DCKVHI--VQRGAVRPLIEMLQSPDVQ 348 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~------~~~~-----~~~~~l--~~~~~l~~L~~ll~~~~~~ 348 (712)
+..++..=.+...+..+. +.+.+..+..+..+..++ ...+ +.+... .-.++++.++.++.+++.+
T Consensus 268 k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~de 347 (980)
T 3ibv_A 268 KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE 347 (980)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchh
Confidence 223222211222222222 356666655554443332 1111 000001 1136888999999888888
Q ss_pred HHHHHHHHHHHHHH--HHHHh--------cCChHHHHHhh----c-cC----Ch-----------hHHHHHHHHHHhccc
Q 005144 349 LREMSAFALGRLAQ--AGIAH--------NGGLVPLLKLL----D-SK----NG-----------SLQHNAAFALYGLAD 398 (712)
Q Consensus 349 v~~~a~~~L~~l~~--~~~~~--------~~~i~~L~~ll----~-~~----~~-----------~v~~~a~~~L~~l~~ 398 (712)
+...+...+..+.. +.... ...++.|++.+ . .. +. +.|+.....+..++.
T Consensus 348 Vs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~ 427 (980)
T 3ibv_A 348 TSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINS 427 (980)
T ss_dssp HHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777666655 11111 11233333332 1 10 01 234444422222222
Q ss_pred -CcchhHH----HHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh-------------hhhHHHHHHHHh-----hh
Q 005144 399 -NEDNVAD----FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH-------------GRVLNHLLYLMR-----VA 455 (712)
Q Consensus 399 -~~~~~~~----l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~-------------~~~~~~Lv~ll~-----~~ 455 (712)
.++..-. .+..-.-..+.++....=...+.....+..+.+... ..+++.+..++. ..
T Consensus 428 l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~ 507 (980)
T 3ibv_A 428 IDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP 507 (980)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC
T ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC
Confidence 1111111 110000000000000000111222222222222111 135555666655 56
Q ss_pred hhhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhc------CCCchhhhhhHHHHHhhhcccc
Q 005144 456 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG------STNPKQQLDGAVALFKLANKAT 516 (712)
Q Consensus 456 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~------~~~~~~~~~a~~~L~~L~~~~~ 516 (712)
+|.|+..++.+++..+..-... ...++.+++.+- ++++.++.+|+.++.++.+...
T Consensus 508 hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 7899999999999887654321 233444444443 4778899999999999998764
No 131
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0099 Score=58.09 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=121.4
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcCCcchh--hhhh--hcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------
Q 005144 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------ 362 (712)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~--~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------ 362 (712)
+| |-+-|.+.++..|.++...+..+....+... .... -....+.+...+.+.+..++..++.++..++.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6678889999999999999988765332111 1111 12456677788899999999999999988875
Q ss_pred --H---HHHhcCChHHHHH-hhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHH
Q 005144 363 --A---GIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 436 (712)
Q Consensus 363 --~---~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l 436 (712)
. ...-...++.|+. .+.+....++..+..++..++.......
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------------------------------- 138 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------------------------------- 138 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH--------------------------------
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH--------------------------------
Confidence 0 0111233455554 3667778888888888876653221111
Q ss_pred HHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccch---hhccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 437 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI---FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 437 ~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
.+++.++..+.+.+|.++..++..|..+......... ..-...++.+..++.+.++.||..|..++..+.+
T Consensus 139 ------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 ------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp ------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1334466667888999999999988887543221100 0011245677888999999999999999999987
Q ss_pred cc
Q 005144 514 KA 515 (712)
Q Consensus 514 ~~ 515 (712)
..
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 64
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.74 E-value=0.037 Score=53.73 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=150.0
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHH---HHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 005144 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ---IVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 203 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 278 (712)
+...+.+..|+..|..=+-+.+..+..+..++.......+.. .... -...+..++.. +++++-..+...|.....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 445577888999998889999999999999998644433211 1111 12333333322 356677777777777765
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhc---CChHHHHHHhCCCCHHHHHHHHH
Q 005144 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAF 355 (712)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~ 355 (712)
. +...+.+...+.+..+.+.++.++.++...|..++..+-.........++.. .++..+-.+|.+++.-+++.++.
T Consensus 153 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 H-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp S-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred h-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 4 7778888888888899999999999999999999988765444443344432 46677888899999999999999
Q ss_pred HHHHHHH---------HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHH
Q 005144 356 ALGRLAQ---------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 406 (712)
Q Consensus 356 ~L~~l~~---------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 406 (712)
.|+.+.. ..+.+..-+..++.+|.+++..+|..|..+..-+..+|.....+
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHH
Confidence 9999987 44555566888999999999999999999988887776654443
No 133
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.67 E-value=0.0059 Score=62.86 Aligned_cols=239 Identities=14% Similarity=0.114 Sum_probs=147.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhc--HHHHHhCCC-HHHHHHhhcC------CC---HHHHHHHHHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNA-LPTLILMLRS------ED---SAIHYEAVGVIGN 275 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~~-l~~L~~ll~~------~~---~~v~~~a~~~L~~ 275 (712)
....|+.-|-++..++|.-|+.+|+.+....... +....+..+ +..++-+.-+ .+ ..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5567777777899999999999999987532211 110001111 2222222211 11 3589999999999
Q ss_pred hhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHH
Q 005144 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (712)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 355 (712)
+ ..-+.. ..++..++..+....++++..+...|..+. +.... -.++++.++..|.+.+.+|+..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 543332 334555555557778999999999998881 11111 2466788888889999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHh----hccC-C-hhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHH
Q 005144 356 ALGRLAQAGIAHNGGLVPLLKL----LDSK-N-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 429 (712)
Q Consensus 356 ~L~~l~~~~~~~~~~i~~L~~l----l~~~-~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~ 429 (712)
+|.-++. .+.+..++.. |.+. + ...-......|..|+..+.. ..
T Consensus 322 tLiPIA~-----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~------------------- 371 (800)
T 3oc3_A 322 LLCHFPI-----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS------------------- 371 (800)
T ss_dssp HHTTSCC-----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC-------------------
T ss_pred Hhhhhcc-----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc-------------------
Confidence 8877662 2333333333 2221 1 22223334445555444321 00
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCchHHH-HHHhcCCCchhhhhhHHHH
Q 005144 430 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL-LGLLGSTNPKQQLDGAVAL 508 (712)
Q Consensus 430 ~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L-~~ll~~~~~~~~~~a~~~L 508 (712)
.....+|+|.++++++-++||..++.+|..+. ....+..+ .+++-..+++++..+..+-
T Consensus 372 ----------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 372 ----------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ----------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ----------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 01246888999999999999999999998886 12233433 4666778888888777766
Q ss_pred H
Q 005144 509 F 509 (712)
Q Consensus 509 ~ 509 (712)
.
T Consensus 432 k 432 (800)
T 3oc3_A 432 K 432 (800)
T ss_dssp H
T ss_pred H
Confidence 3
No 134
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.65 E-value=0.094 Score=61.81 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHH-HHhcccCCccccchhHHHHHHHHHHHHHhhcCCcc-----hhHH
Q 005144 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRV 203 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~ 203 (712)
+++..++.++.+... -+- ..+.....++.+.+ ++. ++ +++..++.+|..+.....+. ...+
T Consensus 210 ~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~--~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~ 277 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT--SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQT 277 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH--SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC--CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 789999999988762 221 12445566666663 332 22 88899999999998642111 1111
Q ss_pred Hh--cCChHHHHH-h-------------hcCCCHHHHHHHHHHHHHhhc-------CChhcHHHHHhCCCHHHHHHhhcC
Q 005144 204 RM--EGGIPPLVE-L-------------LEFTDTKVQRAAAGALRTLAF-------KNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 204 ~~--~~~i~~L~~-l-------------L~~~~~~v~~~a~~~L~~L~~-------~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
.. .+.+..+.. + -.+.+.+.....+..+..+.. ..+.....+ ..+++.++.....
T Consensus 278 ~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 278 VLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcC
Confidence 00 111222211 1 112234455555555544432 111111111 1346666666677
Q ss_pred CCHHHHHHHHHHHHHhhc----CC--hhHHHHHHHcCChHHHHHhhccCC----------------------hhhHHHHH
Q 005144 261 EDSAIHYEAVGVIGNLVH----SS--PNIKKEVLAAGALQPVIGLLSSCC----------------------SESQREAA 312 (712)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~----------------------~~v~~~a~ 312 (712)
++.++...++..+..++. .. ......+. ..+++.++..+..++ ...++.+.
T Consensus 356 ~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~ 434 (1049)
T 3m1i_C 356 EERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER 434 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHH
Confidence 788888888888877764 11 11111111 123344444442110 02233445
Q ss_pred HHHHHHhcCCcchhhhhhhcCChHHHHHHhC--CCCHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHhh----cc---
Q 005144 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ---AGIAHNGGLVPLLKLL----DS--- 380 (712)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~L~~ll----~~--- 380 (712)
.+|..++...+.... .-+.+.+-+.+. ..+...++.++++++.++. ... +...++.++..+ ..
T Consensus 435 ~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~-e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 435 EVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchh-hHHHHHHHHHHHHHHHhhhcc
Confidence 555555532211111 112234444443 3567778888888887765 111 111122233222 11
Q ss_pred --CChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhh
Q 005144 381 --KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 458 (712)
Q Consensus 381 --~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~ 458 (712)
+.+.++..++++++.++.--.... ..-..+++.++..|.++++.
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~----------------------------------~~l~~vl~~ll~~l~~~~~~ 555 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW----------------------------------NFLRTVILKLFEFMHETHEG 555 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH----------------------------------HHHHHHHHHHHHHTTSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH----------------------------------HHHHHHHHHHHHHhcCCCHH
Confidence 123344456666666553110000 01123566777788888899
Q ss_pred HHHHHHHHHHHhcCCCcccchhh----------ccCchHHHHHHhcCCCchhhhhhHHHHHhhhc
Q 005144 459 VQRRVALALAHLCSPDDQRTIFI----------DGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 513 (712)
Q Consensus 459 v~~~a~~~L~~l~~~~~~~~~l~----------~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~ 513 (712)
|+..|+.++.+++.... ..+. -...+..|..++..-+.+.......++..+..
T Consensus 556 V~~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 556 VQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999987422 2221 12233444455555444444445555555554
No 135
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.50 E-value=0.095 Score=61.75 Aligned_cols=312 Identities=9% Similarity=0.088 Sum_probs=159.9
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (712)
.+.++..+...+... .+..++..++.++......-+. ..+.+...++.+.+.+.. ++ +++..|+.
T Consensus 192 ~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~-~~------------~~~~~a~~ 256 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT-SP------------DTRAITLK 256 (1049)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH-SH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC-CH------------hHHHHHHH
Confidence 344444444443321 2345677788888776652111 124456667766633321 23 89999999
Q ss_pred HHHHhc-C--Chh---hHHHHHhCCChHHHHHHHhc---------------ccCCccccchhHHHHHHHHHHHHHhh---
Q 005144 139 ALGLLA-V--KPE---HQQLIVDNGALSHLVNLLKR---------------HMDSNCSRAVNSVIRRAADAITNLAH--- 194 (712)
Q Consensus 139 ~L~~l~-~--~~~---~~~~~~~~~~l~~L~~lL~~---------------~~~~~~~~~~~~v~~~a~~~L~~l~~--- 194 (712)
+|..+. . .+. ....+.. ..+.++..+.. ..+ .+.+.....+..+..+..
T Consensus 257 ~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~-----~d~~~~~~l~~~~~~~~~~~~ 329 (1049)
T 3m1i_C 257 CLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYLARNR 329 (1049)
T ss_dssp HHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCT-----THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCc-----chHHHHHHHHHHHHHHHHHHH
Confidence 999998 3 122 1111110 11222222211 111 012444444444443332
Q ss_pred ----cCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhcHH---HHHhCCCHHHHHHhhcCC---
Q 005144 195 ----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKN---QIVECNALPTLILMLRSE--- 261 (712)
Q Consensus 195 ----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~---~~~~~~---~~~~~~~l~~L~~ll~~~--- 261 (712)
..+.....+ ..+++.++.....++.++...++..+..++.. .+.... .+. ..+++.++..+..+
T Consensus 330 ~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~ 406 (1049)
T 3m1i_C 330 ALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEV 406 (1049)
T ss_dssp HHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTC
T ss_pred HHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcce
Confidence 111112111 24566666666778888998898888887741 111111 111 12345555444211
Q ss_pred ----------------CH---HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc--cCChhhHHHHHHHHHHHhc
Q 005144 262 ----------------DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAA 320 (712)
Q Consensus 262 ----------------~~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~ 320 (712)
+. ..+..+..+|..++...+.....+ +.+.+-..+. ..++..++.++++++.++.
T Consensus 407 ~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 407 LVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp CEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred eeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 11 234455566666653322211111 2333444443 3578899999999999875
Q ss_pred CCcchhhhhhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHHHH--HH--HHhcCChHHHHHhhccCChhHHHHHHH
Q 005144 321 TDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQ--AG--IAHNGGLVPLLKLLDSKNGSLQHNAAF 391 (712)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~--~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (712)
........-.-..+++.+..+... +.+.++..++++++.++. .. -.-...++.+++.+++.++.|+..|+.
T Consensus 483 ~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~ 562 (1049)
T 3m1i_C 483 TMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD 562 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 432221111112344555554321 234555568888888876 11 011234556666778888999999999
Q ss_pred HHHhcccC
Q 005144 392 ALYGLADN 399 (712)
Q Consensus 392 ~L~~l~~~ 399 (712)
++.+++..
T Consensus 563 al~~l~~~ 570 (1049)
T 3m1i_C 563 TFIKIVQK 570 (1049)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 136
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.48 E-value=0.038 Score=52.55 Aligned_cols=173 Identities=9% Similarity=-0.011 Sum_probs=118.1
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh----CCCCHHHHHHHHHHHHHHHHH------H
Q 005144 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQA------G 364 (712)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~~------~ 364 (712)
.+...|-+.+..-+..++..|......+++ .++ ..+..++.++ .++++.+...++.+|..+... .
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345555555677777777776665432222 222 2234445544 478999999999888887651 1
Q ss_pred HH---hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhh
Q 005144 365 IA---HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 441 (712)
Q Consensus 365 ~~---~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (712)
+. ..-.+|.|++-+.+....+|..+..++..++.--. .
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~---------------------------------------~ 165 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG---------------------------------------P 165 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---------------------------------------H
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC---------------------------------------H
Confidence 11 12356778888888888899988888876653100 1
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcccchhhccCch---HHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 442 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 442 ~~~~~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~---~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
..+++.++.-+++.+..++..++..+..+....... ..+++ +.+..++.++|..||..|..++..+..+.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 224566777788889999999999888885544322 24578 99999999999999999999999887754
No 137
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.48 E-value=0.2 Score=48.69 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=162.5
Q ss_pred HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh----HHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHH
Q 005144 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN----IKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQF 318 (712)
Q Consensus 244 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~----~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l 318 (712)
.+...+.+..|+..+..=+-+.|..+..+..++...... ....+.. -...+..++.. .++++...+...|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 344567888999999888899999999999999875443 2223332 23333334432 3567777888888887
Q ss_pred hcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH------HHHHhc---CChHHHHHhhccCChhHHHHH
Q 005144 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------AGIAHN---GGLVPLLKLLDSKNGSLQHNA 389 (712)
Q Consensus 319 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~---~~i~~L~~ll~~~~~~v~~~a 389 (712)
.. .+.....++..+.+..+.+.+..++-++..-|..++..+.. ...... ........++.+++.-+++.+
T Consensus 151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 75 56666777788888999999999999999999998887766 111111 235567788899999999999
Q ss_pred HHHHHhcccCcchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 005144 390 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 469 (712)
Q Consensus 390 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~~~~~v~~~a~~~L~~ 469 (712)
+..|+.|-.++.|...+.+.= -+..-+..+..+|++.+..+|..|..++.-
T Consensus 230 lKLLgelLldr~N~~vM~~Yi-----------------------------s~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv 280 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYI-----------------------------SKPENLKLMMNLLRDKSRNIQFEAFHVFKV 280 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHT-----------------------------TCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHh-----------------------------CCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence 999999988888877665521 133456778899999999999999999888
Q ss_pred hcCCCc----ccchhhcc--CchHHHHHHhcCC--CchhhhhhHHHHHhhh
Q 005144 470 LCSPDD----QRTIFIDG--GGLELLLGLLGST--NPKQQLDGAVALFKLA 512 (712)
Q Consensus 470 l~~~~~----~~~~l~~~--~~~~~L~~ll~~~--~~~~~~~a~~~L~~L~ 512 (712)
++.++. ...++..+ ..+..|-.+..+. ++.....-+..+..+.
T Consensus 281 FVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 281 FVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp HHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred eeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHH
Confidence 865544 22333222 2344445555544 3333333333444443
No 138
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.19 E-value=0.023 Score=58.64 Aligned_cols=238 Identities=18% Similarity=0.117 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHHHhc-CChh--hHHHHHhCCChHHHHHHHhc--ccCCccccchhHHHHHHHHHHHHHhhcCCcchhHH
Q 005144 129 EHEVEKGSAFALGLLA-VKPE--HQQLIVDNGALSHLVNLLKR--HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (712)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~--~~~~~~~~~~l~~L~~lL~~--~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 203 (712)
.+++|..|+-+|..+. .... .+.........-.++-++.- ..+-....--..|++.++.+|+.+ ..-+..
T Consensus 187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e---- 261 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP---- 261 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS----
T ss_pred chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh----
Confidence 3499999999998887 2110 00000000222233333321 111000011238999999999998 544332
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005144 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 204 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
..++..++..+..+..+++..++-.|.++. +-... . .++++.++..|.+.+.+||..|+.+|.-++ .++.
T Consensus 262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--L-d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~ 331 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--K-DGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS 331 (800)
T ss_dssp --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--H-HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST
T ss_pred --HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--H-HHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh
Confidence 234455555667888999999999999992 11111 1 346788888899999999999999999998 2332
Q ss_pred HHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005144 284 KKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (712)
... ++..+.+.|.+- -..........|+.+++..... -.....+|.|...+++.-+.||.+++.+|..+.
T Consensus 332 l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 LDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 222 445566666542 1223344455777777644321 122478899999999999999999999987654
Q ss_pred HHHHHhcCChHH-HHHhhccCChhHHHHHHHHHH
Q 005144 362 QAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 394 (712)
Q Consensus 362 ~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~L~ 394 (712)
. ...+.. +-++|-.++.+++..+..+-.
T Consensus 404 ~-----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 E-----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 122222 233346778888888877774
No 139
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.06 E-value=0.61 Score=54.16 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcC
Q 005144 129 EHEVEKGSAFALGLLAVKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (712)
++..++.++++++.|++.+.- ...-.-..+++.|++++......+ +...++..++|+++..+.--..... .-..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d---~k~~v~~t~~~~lGry~~wl~~~~~--~L~~ 540 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD---NKAVVASDIMYVVGQYPRFLKAHWN--FLRT 540 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHTCHHHHHHCHH--HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHhccHH--HHHH
Confidence 459999999999999944321 111122235777888775422100 0113455677999887742111111 1223
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHh------CCCHHH----HHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPT----LILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~l~~----L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
.+..|++.+..+++.++..||+++.+||. ..+..+.. ...++. +...+..-++.-+..+..+++.+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45566667767788999999999999995 33333321 112333 333444456677778888888887
Q ss_pred cCCh
Q 005144 278 HSSP 281 (712)
Q Consensus 278 ~~~~ 281 (712)
...+
T Consensus 618 ~~~~ 621 (1023)
T 4hat_C 618 SEER 621 (1023)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6544
No 140
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.98 E-value=0.029 Score=51.64 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=99.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHH-hhccCChhhHHHHHHHHHHHhc-CCcchhh
Q 005144 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKV 327 (712)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 327 (712)
.++....+.+++..++|..|+..|+.+ ...+ ..++.+.. +..+.++.|++.++.++..++. .+++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 356666777888889999999999888 3221 15666666 5567789999999999999984 3333
Q ss_pred hhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHh-cCChHHHHHhhccCChhHHHHHHHHHHhcccC-cchh
Q 005144 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQA--GIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNV 403 (712)
Q Consensus 328 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~ 403 (712)
..++.+..+..++++.+|+.|...+...+.. ...+ ...++.|..+..+++.-||+...+.|..++.. |+-.
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 2568889999999999999998876443320 0000 11234444455778899999999999999874 5555
Q ss_pred HHHHh
Q 005144 404 ADFIR 408 (712)
Q Consensus 404 ~~l~~ 408 (712)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 141
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.95 E-value=0.25 Score=45.80 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCC-----hhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHH
Q 005144 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLI 339 (712)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~ 339 (712)
..+|+..|-.++. +++.+..++++++.-.|...|+..+ +-+|..+.++++.+...+ ++....+.+.+++|..+
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3556666666664 6888999999998888888886542 567888999999988543 46677888899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHH------------HHHH-hcCChHHHH-HhhccCChhHHHHHHHHHHhcccCcchhHH
Q 005144 340 EMLQSPDVQLREMSAFALGRLAQ------------AGIA-HNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVAD 405 (712)
Q Consensus 340 ~ll~~~~~~v~~~a~~~L~~l~~------------~~~~-~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 405 (712)
..++.++.-.+..|...+..+.. +.+. -...+..++ .+..++++.+.+.++.+-..|+.++..+..
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999899888888876 1110 011222222 233678899999999999999999998888
Q ss_pred HHhhCccccccccch
Q 005144 406 FIRVGGVQKLQDGEF 420 (712)
Q Consensus 406 l~~~~~i~~L~~~~~ 420 (712)
+.. ...+.|.++.|
T Consensus 232 L~~-~LP~~Lrd~tf 245 (268)
T 2fv2_A 232 LRQ-CLPDQLKDTTF 245 (268)
T ss_dssp HHH-HSCGGGTSSTT
T ss_pred HHH-hCcHHhhChHH
Confidence 775 33444444433
No 142
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.88 E-value=0.69 Score=42.89 Aligned_cols=178 Identities=11% Similarity=0.118 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 156 (712)
-...|+..|--++++|+.|..+.++.+.-.|..+|...+... .-.-+|..++..++.+. ++++.-..+.+.
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r-------~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t 144 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR-------PFEYLRLTSLGVIGALVKTDEQEVINFLLTT 144 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH-------HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC-------cchhhhhhHHHHHHHHhccCcHHHHHHHHhh
Confidence 356677777888889999999999999989999998777621 12368999999999999 888888888999
Q ss_pred CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcch-------hHHHhcCChHHHH-HhhcCCCHHHHHHHH
Q 005144 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-------TRVRMEGGIPPLV-ELLEFTDTKVQRAAA 228 (712)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~~~~~~~i~~L~-~lL~~~~~~v~~~a~ 228 (712)
+.+|..++.++..+. -....|..++..+-.++.... ....-..++..++ .+...+++.+.+.+.
T Consensus 145 EiiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhii 216 (268)
T 2fv2_A 145 EIIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 216 (268)
T ss_dssp THHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hHHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999999999988775 555667777777665332111 1111112333333 344577899999999
Q ss_pred HHHHHhhcCChhcHHHHHhC-------CCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 229 GALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~-------~~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
++-..|+. ++..++.+... |.+. .++ .+|+.++..-...+.|+
T Consensus 217 rcYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 217 RCYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 99999994 77766665531 1111 222 24677777777777665
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.85 E-value=0.18 Score=46.41 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=99.3
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (712)
++....+.+++.. ++|..|+.+|+.+. +. . ..++.+...+.... .+.|++.+
T Consensus 73 ~~la~~L~~~~~d------------eVR~~Av~lLg~~~--~~-~------~~L~~ir~~va~D~-------~WrVre~l 124 (240)
T 3l9t_A 73 KKLAFLAYQSDVY------------QVRMYAVFLFGYLS--KD-K------EILIFMRDEVSKDN-------NWRVQEVL 124 (240)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHTT--TS-H------HHHHHHHHTGGGCS-------CHHHHHHH
T ss_pred HHHHHHHHhCcch------------HHHHHHHHHHHhcc--Cc-H------HHHHHHHHHhCCCC-------CccHHHHH
Confidence 4555566666655 89999999988872 11 1 12333333232222 36999999
Q ss_pred HHHHHHHhh-cCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHH
Q 005144 186 ADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (712)
Q Consensus 186 ~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 264 (712)
..++..+|. .+++ ..++.+...+.+++..+|+.|+..+..-+.. +..+. ...-+++.+-.+..+++..
T Consensus 125 A~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~y 193 (240)
T 3l9t_A 125 AKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEY 193 (240)
T ss_dssp HHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHH
T ss_pred HHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHH
Confidence 999999995 4443 1567888999999999999999888653321 11110 0112467777788888999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 265 IHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
||...++.|..++..+|+....+++
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 9999999999999999987555543
No 144
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.59 E-value=1.3 Score=43.21 Aligned_cols=192 Identities=12% Similarity=0.078 Sum_probs=105.7
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhcccCCccccchhHHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~ 184 (712)
+..+.+++..+.. .+--++..+.-..-+|.....+.+.+.-..++. ++....+... ...+..
T Consensus 105 l~~l~kil~WP~~-------------~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~----p~n~ml 167 (304)
T 3ebb_A 105 LQILWKAINCPED-------------IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGK----PANQLL 167 (304)
T ss_dssp HHHHHHHHTSCTT-------------TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSC----HHHHHH
T ss_pred HHHHHHHHcCCHH-------------hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCC----hHHHHH
Confidence 4566666654443 344566666655566766665554433344442 3322111111 144778
Q ss_pred HHHHHHHHhhcCCcchhHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-C
Q 005144 185 AADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-E 261 (712)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-~ 261 (712)
+++++.|+.. ++..+..+... .+++.+...+.+++..++..++.++.|++.........-....++..+..+++. .
T Consensus 168 ~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~ 246 (304)
T 3ebb_A 168 ALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQ 246 (304)
T ss_dssp HHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccC
Confidence 8999999986 55555554432 233445555556788999999999999985211110000011134445555543 5
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 315 (712)
+.+....++-+|++|...+.+..+....-|....+-.+.....+.-..+++..+
T Consensus 247 d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 247 DLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 889999999999999977555443333344444444444432333333344333
No 145
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.79 E-value=2.3 Score=49.37 Aligned_cols=315 Identities=10% Similarity=0.093 Sum_probs=156.9
Q ss_pred HHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHH-HhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 59 v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
.+.+++.+...+... .+++....++.+|+.+..--+ ...+++.+.++.+ ..+|.. + +++..|+
T Consensus 204 ~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~~--~------------~~r~aA~ 267 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLNV--P------------MFRNVSL 267 (1073)
T ss_dssp CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSSS--H------------HHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcCC--h------------HHHHHHH
Confidence 444555555544322 355567778888888877322 2356778888887 466632 2 8999999
Q ss_pred HHHHHhc-C-ChhhHHHHHh--CCChHHHHHHHhcccCC-----ccccchhHHHHHHHHHHHHHhhcC-------Ccchh
Q 005144 138 FALGLLA-V-KPEHQQLIVD--NGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHEN-------SSIKT 201 (712)
Q Consensus 138 ~~L~~l~-~-~~~~~~~~~~--~~~l~~L~~lL~~~~~~-----~~~~~~~~v~~~a~~~L~~l~~~~-------~~~~~ 201 (712)
.+|..|. . .++....+.. ...+..+..++.....- .....+.+.....+..+..+...+ +..+.
T Consensus 268 dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~ 347 (1073)
T 3gjx_A 268 KCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLRE 347 (1073)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchH
Confidence 9999998 3 3333222211 11222222222111000 000112255566666666555322 11111
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC----Ch-----h------------cHHHHHh---CCCHHHHHHh
Q 005144 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----ND-----E------------NKNQIVE---CNALPTLILM 257 (712)
Q Consensus 202 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~----~~-----~------------~~~~~~~---~~~l~~L~~l 257 (712)
.+ ..++..++.+...++.++...+......|... .+ . .+..+.. ..+...++.-
T Consensus 348 ~l--~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~ 425 (1073)
T 3gjx_A 348 AL--MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSR 425 (1073)
T ss_dssp HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 11 11333455555678888888877776666431 10 0 0111100 1122333333
Q ss_pred hcCCC--------------------H-----HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc--cCChhhHHH
Q 005144 258 LRSED--------------------S-----AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQRE 310 (712)
Q Consensus 258 l~~~~--------------------~-----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~ 310 (712)
+..++ . .+.+.++..+.++ ..+....+ .++.+-..+. ..++...+.
T Consensus 426 m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l---~~~~~~~i----~~~~l~~~~~~~~~sW~~lea 498 (1073)
T 3gjx_A 426 MAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL---DYVDTEII----MTKKLQNQVNGTEWSWKNLNT 498 (1073)
T ss_dssp CCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH---CHHHHHHH----HHHHHHHHHTSCCCCHHHHHH
T ss_pred cCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC---CHHHHHHH----HHHHHHHHhcCCCCCHHHHhH
Confidence 32111 1 1222333333333 12211111 2233333333 236899999
Q ss_pred HHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC-----CHHHHHHHHHHHHHHHH--H--HHHhcCChHHHHHhhccC
Q 005144 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQ--A--GIAHNGGLVPLLKLLDSK 381 (712)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~l~~--~--~~~~~~~i~~L~~ll~~~ 381 (712)
++|+++.++..-......-.=..+++.|+.+.... .+.++...+++++...+ . .-.-...+..|++.+++.
T Consensus 499 ~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~ 578 (1073)
T 3gjx_A 499 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHET 578 (1073)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence 99999999743222111111124556666665332 23355556677777776 1 001122344566667888
Q ss_pred ChhHHHHHHHHHHhccc
Q 005144 382 NGSLQHNAAFALYGLAD 398 (712)
Q Consensus 382 ~~~v~~~a~~~L~~l~~ 398 (712)
++.++..|+.++..++.
T Consensus 579 ~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp STTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999975
No 146
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.28 E-value=0.55 Score=45.30 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=100.7
Q ss_pred HHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCC
Q 005144 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCC 304 (712)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~ 304 (712)
.+...| +|..++....+-++..+++..+...++.++.++.+..+..|...+.. ...+..- -...+|.++..+. +++
T Consensus 262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t~-L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKTP-LENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTSC-CTTHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhcc-ccccchHHHHHhccCCC
Confidence 333344 45556777788899999999999999999999999999999988643 2211110 1346888888886 668
Q ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-------CCHHHHHHHHHHHHHHHH
Q 005144 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~ 362 (712)
.++.......|+|+.++....++..+..|+++.|...+.. .+..-+..+|+.++|..+
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LR 403 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLR 403 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHH
Confidence 8999999999999998887888888889999999988732 344556667776666555
No 147
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.27 E-value=1.4 Score=51.43 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=84.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhH
Q 005144 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNI 283 (712)
Q Consensus 211 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~ 283 (712)
.+.+.+...+.+-+..++.+|+|+.. + ..++.|..++.. ....+|..|+++|.+++...+..
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~ 512 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK 512 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence 34455567778888899999999984 2 346777777632 24678899999999998665543
Q ss_pred HHHHHHcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHH
Q 005144 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (712)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l 360 (712)
+-+.++.+.. ..+.++|..|+..|... ++.. ..+..+...+.. .+.+|.......|.++
T Consensus 513 --------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 513 --------VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSL 574 (1056)
T ss_dssp --------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 2345677774 45788999888888653 2221 235666677744 7888888777777665
Q ss_pred HH
Q 005144 361 AQ 362 (712)
Q Consensus 361 ~~ 362 (712)
+.
T Consensus 575 a~ 576 (1056)
T 1lsh_A 575 SR 576 (1056)
T ss_dssp TT
T ss_pred Hh
Confidence 55
No 148
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.86 E-value=0.092 Score=43.38 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=64.7
Q ss_pred cccEEEEecCccchhhHHHhhhcCHHHHHhccCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh-hHHHH
Q 005144 544 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDL 618 (712)
Q Consensus 544 ~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l 618 (712)
..-|.+.++|..|..-+..|....+ .+|... +.....+.+-+ |=++..|+.+|.|+-+|.+.++.+ .+..+
T Consensus 12 ~~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 12 DELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred CCEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 3457888999999999999975433 233221 11123446666 459999999999999999987654 47889
Q ss_pred HHHHHHhChHhHH--HHHHHHH
Q 005144 619 LRAADQYLLEGLK--RLCEYTI 638 (712)
Q Consensus 619 ~~~A~~~~~~~l~--~~c~~~l 638 (712)
.+-|++|+++.+. ..|....
T Consensus 88 ~~Ea~fy~i~~l~l~~cC~~~~ 109 (124)
T 1s1g_A 88 DDELAFYGILPEIIGDCCYEEY 109 (124)
T ss_dssp HHHHHHTTCCGGGBCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHH
Confidence 9999999998873 3444433
No 149
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=93.17 E-value=0.027 Score=45.95 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=68.3
Q ss_pred cEEEEecCccchhhHHHhhhcCH-HHHHhccCCC-CCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh-hHHHHHHHH
Q 005144 546 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA 622 (712)
Q Consensus 546 D~~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l~~~A 622 (712)
-|.+.+||..|...+..|..... ++..|+++.. -....+.+-+ +=++..|+.+|.|+-+|++.++.+ ....+.+-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 47788999999999999986643 4556665422 1123456666 568999999999999999987654 467899999
Q ss_pred HHhChHhHHH--HHHHHHHhc
Q 005144 623 DQYLLEGLKR--LCEYTIAQD 641 (712)
Q Consensus 623 ~~~~~~~l~~--~c~~~l~~~ 641 (712)
++|+++...- .|.....++
T Consensus 85 ~fy~i~~~~l~~CC~~~~~~~ 105 (115)
T 3kvt_A 85 EFWGLDSNQVEPCCWMTYTAH 105 (115)
T ss_dssp HHHTCCGGGBCGGGSHHHHSC
T ss_pred HHhCCChHHHHHHHHHHHHhc
Confidence 9999987543 354444443
No 150
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.76 E-value=1.7 Score=42.26 Aligned_cols=168 Identities=10% Similarity=-0.054 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHH-hhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (712)
.+.-++..|+-+..++.....+.+.+.-..++ .++....+ +..+..+..+++++.|+..++..+..+...
T Consensus 118 ~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~- 188 (304)
T 3ebb_A 118 IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNP--------KGKPANQLLALRTFCNCFVGQAGQKLMMSQ- 188 (304)
T ss_dssp TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCT--------TSCHHHHHHHHHHHHHGGGSHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCC--------CCChHHHHHHHHHHHHccCCchhHHHHHHH-
Confidence 35566667776666776666665543333333 22222111 012256889999999999888887777653
Q ss_pred ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 005144 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~ 236 (712)
...++..+....... ...++..++..+.|++......+..-....++..+..++. ..+.+....++.+|++|..
T Consensus 189 -~~~il~~~~~~~~~~----nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 189 -RESLMSHAIELKSGS----NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp -HHHHHHHHHGGGSSC----CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 345555554332111 1278888888999998521110100001113344445554 3578999999999999997
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcC
Q 005144 237 KNDENKNQIVECNALPTLILMLRS 260 (712)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~ll~~ 260 (712)
.+.+.++.....++-..+-++...
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred CChhHHHHHHHcCHHHHHHHHHhC
Confidence 544433333334444444444444
No 151
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.54 E-value=0.97 Score=43.62 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 005144 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (712)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (712)
+...+...|.-+..+++..+.+++.+++..+...++-++. ++.+...+.|...++....+..- -.+.
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~------------~l~RaG~KLLLQVSDaksL~~t~-L~e~ 325 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN------------DLIRAGCKLLLQVSDAKALAKTP-LENI 325 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHHHHTTCGGGGTSC-CTTH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc------------HHHHhhhheeeeecchHHHhhcc-cccc
Confidence 3444555566666678888999999999999999999888 89999999998888554432211 1245
Q ss_pred hHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHH
Q 005144 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGAL 231 (712)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L 231 (712)
+|.++..+....++ ++.....+.|+|...+..+.++..+..|.++.|-..+.. .+..-+..||+++
T Consensus 326 LPFi~~~i~~h~eD-------dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Ii 398 (619)
T 3c2g_A 326 LPFLLRLIEIHPDD-------EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEII 398 (619)
T ss_dssp HHHHHHHHHHCCCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHH
T ss_pred chHHHHHhccCCCc-------ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHH
Confidence 78888888754442 889999999999998888888888899999988877643 2344566677776
Q ss_pred HHhh
Q 005144 232 RTLA 235 (712)
Q Consensus 232 ~~L~ 235 (712)
+|-.
T Consensus 399 cN~L 402 (619)
T 3c2g_A 399 CNCL 402 (619)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 152
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.47 E-value=0.89 Score=46.41 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=94.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcC
Q 005144 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (712)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 333 (712)
++...+ +++...+-|+..|......-|+.... .+..+++++++.+..+|.+|...|..+|.. +.. .+
T Consensus 34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-----~k 100 (507)
T 3u0r_A 34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-----PR 100 (507)
T ss_dssp HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-----HH
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-----hh
Confidence 344333 46889999999999999888886555 678899999999999999999999999964 332 34
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHh
Q 005144 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 395 (712)
Q Consensus 334 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 395 (712)
+...|.++|...++.-...+-.+|..+.. +-..+.+..+..-+.++++.+|+.++..|..
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk--~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFK--MDAKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHh--cChHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 56899999999888777777777777666 1112234445555555678899998888854
No 153
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.16 E-value=6.1 Score=36.72 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=99.9
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCccc---cchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 221 (712)
.....-+.+ ..+|+..|+.+|......... +.+......++.||..+..........+...+.+..+...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 334455555 467889999988764322111 1234677788899988886444444455556778889999999999
Q ss_pred HHHHHHHHHHHHhhcCCh-hc-HHHHH----------hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------
Q 005144 222 KVQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------ 282 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~------ 282 (712)
.++..++..|..+|.-.+ .+ ...+. +..-...++..++. .+.+.+..++..+-.+....++
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 190 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 190 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 999999999998886333 23 33322 23345667777764 4566766666666666554443
Q ss_pred HHHHHHHcCChHHHHHhhc-cCChhhHHH
Q 005144 283 IKKEVLAAGALQPVIGLLS-SCCSESQRE 310 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~-~~~~~v~~~ 310 (712)
.+..+...|+.+.+ ..++ ..++++..+
T Consensus 191 lR~ef~~~Gl~~il-~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 191 IRSELMRLGLHQVL-QELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHTTHHHHH-HHHHHCCCHHHHHH
T ss_pred HHHHHHHCChHHHH-HHHhccCCHHHHHH
Confidence 22334445544444 4444 345555444
No 154
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.93 E-value=9.2 Score=44.58 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred hHHHHHhhcC----CCHHHHHHHHHHHHHhhc----CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005144 209 IPPLVELLEF----TDTKVQRAAAGALRTLAF----KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (712)
Q Consensus 209 i~~L~~lL~~----~~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (712)
+..+..++.+ .++.++..++-+++.|+. .++.+....+. .+...+...+...+.+-+..++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4466677765 356677777777766653 21111111111 123344455566778888999999999953
Q ss_pred hhHHHHHHHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh--CCCCHHHHH
Q 005144 281 PNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLRE 351 (712)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~ 351 (712)
+. .++.|..++.. ....++..|+++|.+++...+.. +-+.++++. ...++++|.
T Consensus 470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHH
Confidence 32 56677777642 13468888999999998533222 235677777 557899999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhcccCc
Q 005144 352 MSAFALGRLAQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNE 400 (712)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 400 (712)
.|+..|....- ....+..+...+ ..++.+|.......|.+++...
T Consensus 533 aA~~~Lm~t~P----~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 533 RSCIVFFESKP----SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHTCC----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCc----CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 98888743100 001123344444 3467888888888888887643
No 155
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=91.92 E-value=0.12 Score=43.61 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=62.2
Q ss_pred CcccEEEEecCccchhhHHHhhhcCHHHHHhccCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh-hHHH
Q 005144 543 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQD 617 (712)
Q Consensus 543 ~~~D~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ 617 (712)
...-|.+.++|..|...+..|...-+ .+|... +.....+.+-+ |=++..|+.+|.|+-+|.+.++.+ .+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 34457888999999999999985433 233321 11123446666 459999999999999999887654 4788
Q ss_pred HHHHHHHhChHhH
Q 005144 618 LLRAADQYLLEGL 630 (712)
Q Consensus 618 l~~~A~~~~~~~l 630 (712)
+.+-|++|+|+.+
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999886
No 156
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=91.38 E-value=0.087 Score=42.15 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=58.7
Q ss_pred EEEEecCccchhhHHHhhhcCHHHHHhccCCC----CCCCCCceecCCCCHHHHHHHHHHHhcCCCCCChh-hHHHHHHH
Q 005144 547 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA 621 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l~~~ 621 (712)
|.+.++|..|...+..|....+ .++.... .....+.+-+ |=++..|+.+|.|+-+|.+.++.+ .+..+.+-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 5778899999999999975433 2332210 1112345665 459999999999999999886654 37889999
Q ss_pred HHHhChHhH
Q 005144 622 ADQYLLEGL 630 (712)
Q Consensus 622 A~~~~~~~l 630 (712)
|++|+++.+
T Consensus 78 a~fy~i~~l 86 (105)
T 1nn7_A 78 LAFFGLIPE 86 (105)
T ss_dssp HHHHTCCSC
T ss_pred HHHcCCCHH
Confidence 999999886
No 157
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.38 E-value=1.8 Score=44.29 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
..++.|+..+.+.. .-|+.++. ++..++++..+.+. .++..|+..|..+|.+ +. -. .+.
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~--------~IR~qaik~Lp~~ck~-~~-i~-----kia 102 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV--------SIRRQAIKELPQFATG-EN-LP-----RVA 102 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH--------HHHHHHHHHGGGGCCT-TC-HH-----HHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--------HHHHHHHHhhHHHhhh-hh-hh-----hHH
Confidence 78999999999999 88888666 67889999988876 9999999999999985 32 22 245
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 210 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
..|+++|..+++.-...+-.+|..+...++. +.+..+...+..+++.+|..++..|..-
T Consensus 103 DvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 103 DILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 6899999998877777777777777643332 2345555555456788888888887543
No 158
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.67 E-value=8.6 Score=38.78 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=105.9
Q ss_pred HHHHHHHhhc--ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH-hCCCh
Q 005144 83 ATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGAL 159 (712)
Q Consensus 83 a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~l 159 (712)
.+..|.-..+ ...+...++ .+|+..|+.+|..-.... ...+...+...+..++++|..|.++......+. ....+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~-~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEK-EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 3444443333 356777776 677899998885321100 000112345788899999999996665544444 55778
Q ss_pred HHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCC-cc-hhHH----------HhcCChHHHHHhhcC-CCHHHHHH
Q 005144 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SI-KTRV----------RMEGGIPPLVELLEF-TDTKVQRA 226 (712)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~lL~~-~~~~v~~~ 226 (712)
..|...|.+... .++..++..|..+|.-.. .. ...+ .+..-...++..+.+ .+.+.+..
T Consensus 165 ~~l~~~L~s~~~--------~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~ 236 (383)
T 3eg5_B 165 LLLVRAMDPAVP--------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG 236 (383)
T ss_dssp HHHHHTCCTTSH--------HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH
T ss_pred HHHHHHhCCCch--------HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHH
Confidence 888888766655 888889999999996443 22 2221 223446678888876 56788877
Q ss_pred HHHHHHHhhcCChhc------HHHHHhCCCHHHHHHhhcCCCHHHHH
Q 005144 227 AAGALRTLAFKNDEN------KNQIVECNALPTLILMLRSEDSAIHY 267 (712)
Q Consensus 227 a~~~L~~L~~~~~~~------~~~~~~~~~l~~L~~ll~~~~~~v~~ 267 (712)
++..+..+....++. +..+...|+.+.+-.+=..+++++..
T Consensus 237 ~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 237 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 777777777533322 34455677666665533334555443
No 159
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.63 E-value=6.3 Score=36.63 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=99.3
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHhcccC
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMD 171 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~lL~~~~~ 171 (712)
...+...+ ..||+..|+.+|....... +......+.+.+..++.+|..|.++......+. ..+++..+...|.+...
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~-~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEK-EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcc-cccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 34666667 4677888888885432100 000002355788899999999996665544444 45677777777765544
Q ss_pred CccccchhHHHHHHHHHHHHHhhcCC-cc-hhHH----------HhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC
Q 005144 172 SNCSRAVNSVIRRAADAITNLAHENS-SI-KTRV----------RMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKN 238 (712)
Q Consensus 172 ~~~~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~ 238 (712)
.++..++..|..+|.-.. .. ...+ .+..-...++..+.+ .+.+.+..++..+..+....
T Consensus 111 --------~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 111 --------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp --------HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred --------hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence 888888888888886433 12 2221 122345567777764 55777777777777776533
Q ss_pred hhc------HHHHHhCCCHHHHHHhhcCCCHHHHHH
Q 005144 239 DEN------KNQIVECNALPTLILMLRSEDSAIHYE 268 (712)
Q Consensus 239 ~~~------~~~~~~~~~l~~L~~ll~~~~~~v~~~ 268 (712)
++. +..+...|..+.+-.+=..+++++..+
T Consensus 183 ~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 183 EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 321 344556766666655544455554433
No 160
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.78 E-value=6.3 Score=39.78 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=100.8
Q ss_pred CChhhHHHHHhCCChHHHHHHHhcccCCcc---ccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCH
Q 005144 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNC---SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (712)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 221 (712)
.....-+.+. .+|+..|+.+|........ ...+......++.||..+..........+.....+..|...+.+.++
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch
Confidence 3344555555 6788999999965422111 01223677788889988875333444455566788999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh-hc-HHHHH----------hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------
Q 005144 222 KVQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------ 282 (712)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~------ 282 (712)
.++..|+..|..+|.-.. .+ ...+. +..-...++..++. .+.+....++..+-.+....++
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999886432 22 33222 23446677888876 4667777766666666555433
Q ss_pred HHHHHHHcCChHHHHHhhccC-ChhhHHH
Q 005144 283 IKKEVLAAGALQPVIGLLSSC-CSESQRE 310 (712)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~-~~~v~~~ 310 (712)
.+..+...|+.+.+- -++.. ++++..+
T Consensus 257 lR~ef~~~Gl~~il~-~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQ-ELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHHTTHHHHHH-HHTTSCCHHHHHH
T ss_pred HHHHHHHCChHHHHH-HHhcCCChhHHHH
Confidence 223334455555444 45543 4444433
No 161
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=88.22 E-value=0.22 Score=39.27 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred EEEEecCccchhhHHHhhhcCH-HHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhc-CCCCCChh-hHHHHHHHH
Q 005144 547 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA 622 (712)
Q Consensus 547 ~~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~l~~~A 622 (712)
|.+.++|..|...+..|...-+ .+.+|++.. .-....+.+-+ |=++..|+.+|.|+-+ |++..+.+ .+..+.+-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6778899999999999965422 222333211 11123446666 5589999999999998 88876544 467899999
Q ss_pred HHhChHhHH
Q 005144 623 DQYLLEGLK 631 (712)
Q Consensus 623 ~~~~~~~l~ 631 (712)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998754
No 162
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.31 E-value=16 Score=43.34 Aligned_cols=287 Identities=11% Similarity=0.034 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C-----Chhh
Q 005144 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-----KPEH 149 (712)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-----~~~~ 149 (712)
+...+.+|-..|..+..+++ +...+...|.+.+. ++.+|..|+..|.+.. . .++.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~----------~~~vR~~A~~~Lk~~I~~~W~~l~~e~ 86 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQ----------VAIVRHFGLQILEHVVKFRWNGMSRLE 86 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTS----------CHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred ChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCC----------CHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 44567777777776654332 33444444432222 2389999999998876 2 2333
Q ss_pred HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 005144 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (712)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 229 (712)
+..+. ..++..+....... ......++...+.++..++..+-+ ..+ .++++.|+.++.+ ++..+..++.
T Consensus 87 k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p-~~W---p~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 87 KVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWP-QHW---PDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp HHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHHhcC-CHHHHHHHHH
Confidence 33322 33445544331100 000127788888888888864211 111 2566788888866 5566778888
Q ss_pred HHHHhhcCCh------hcH-H----HHHhC--CCHHHHHHhhcC-------------------CCHHHHHHHHHHHHHhh
Q 005144 230 ALRTLAFKND------ENK-N----QIVEC--NALPTLILMLRS-------------------EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 230 ~L~~L~~~~~------~~~-~----~~~~~--~~l~~L~~ll~~-------------------~~~~v~~~a~~~L~~L~ 277 (712)
+|..|+.+.. ..+ . .+.+. .++..+..++.. ++..++..++.++.+..
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 8888874211 011 1 11111 122223333322 12346677777777665
Q ss_pred cCChhHHHHHHHcC--ChHHHHHhhccCChhhHHHHHHHHHHHhcCCc--chhhhhhh---cCChHHHHHHhC-------
Q 005144 278 HSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKVHIVQ---RGAVRPLIEMLQ------- 343 (712)
Q Consensus 278 ~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~---~~~l~~L~~ll~------- 343 (712)
..-+. ..+.+.. .++.+..++. +++++..|+.+|..+..... +.+..++. ...+..++..+.
T Consensus 236 ~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~ 311 (1204)
T 3a6p_A 236 DWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGL 311 (1204)
T ss_dssp TTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC
T ss_pred hccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC
Confidence 44322 2223332 6677776665 47889999999999986442 22222222 111334455541
Q ss_pred -CCCHHHHHHHHHHHHHHHH--HHHHh-------c----CChHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 344 -SPDVQLREMSAFALGRLAQ--AGIAH-------N----GGLVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 344 -~~~~~v~~~a~~~L~~l~~--~~~~~-------~----~~i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
+.+.++.+..+..+..+.. ..+.. . +.++.++.+..+++..+...++..-..+
T Consensus 312 ~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~l 378 (1204)
T 3a6p_A 312 VEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGAL 378 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHH
Confidence 1245677777777777775 22222 1 2244555555566666666655543333
No 163
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.64 E-value=8.7 Score=38.83 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=97.8
Q ss_pred hhHHHHHhCCChHHHHHHHhcccCCccc---cchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHH
Q 005144 148 EHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ 224 (712)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 224 (712)
.+-+.+. .+|+..|+.+|......... ..+......++.||..+..........+....++..+...+.++++.++
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r 117 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 117 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 3444443 46788888888654321111 1234677788899988886444445555666788899999998999999
Q ss_pred HHHHHHHHHhhcCCh-hc-HHHHH----------hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------HHH
Q 005144 225 RAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKK 285 (712)
Q Consensus 225 ~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~------~~~ 285 (712)
..++..|..+|.-.. .+ ...+. +..-+..++..+.. .+.+....++..+-.+....++ .+.
T Consensus 118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~ 197 (386)
T 2bnx_A 118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 197 (386)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999988886333 23 22222 23345567777763 4566776666666666655443 233
Q ss_pred HHHHcCChHHHHHhhcc-CChhhHHH
Q 005144 286 EVLAAGALQPVIGLLSS-CCSESQRE 310 (712)
Q Consensus 286 ~~~~~~~l~~L~~lL~~-~~~~v~~~ 310 (712)
.+...|+.+. +.-++. .++.+..+
T Consensus 198 Ef~~~GL~~i-l~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 198 ELMRLGLHQV-LQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTTHHHH-HHHHTTCCCHHHHHH
T ss_pred HHHHCChHHH-HHHHhccCChhHHHH
Confidence 4444555554 444443 45555444
No 164
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.89 E-value=26 Score=35.34 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=99.9
Q ss_pred ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhcCChhhHH-HHHhCCChHHHHHHHhcccC
Q 005144 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ-LIVDNGALSHLVNLLKRHMD 171 (712)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~ 171 (712)
+..+...+. .+|+..|+.+|....... +......+......++.+|..|.++..... .+...+++..+...|.+...
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~-~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEK-EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-TTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 346666665 577888888875321100 000002355788999999999996655444 44455678888777765544
Q ss_pred CccccchhHHHHHHHHHHHHHhhcCC-cc-hhHH----------HhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 005144 172 SNCSRAVNSVIRRAADAITNLAHENS-SI-KTRV----------RMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKN 238 (712)
Q Consensus 172 ~~~~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~ 238 (712)
.++..++..|..+|.-.. .. ...+ .+..-...++..+. +.+.+.+..++..+..+....
T Consensus 115 --------~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~ 186 (386)
T 2bnx_A 115 --------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 186 (386)
T ss_dssp --------HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred --------hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCC
Confidence 777888888888886443 12 1111 12234556777776 456777777777777777533
Q ss_pred hhc------HHHHHhCCCHHHHHHhhcCCCHHHHHH
Q 005144 239 DEN------KNQIVECNALPTLILMLRSEDSAIHYE 268 (712)
Q Consensus 239 ~~~------~~~~~~~~~l~~L~~ll~~~~~~v~~~ 268 (712)
++. +..+...|+.+.+-.+-...++.+...
T Consensus 187 ~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 187 EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 321 445666776666555544456655444
No 165
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=84.69 E-value=27 Score=33.43 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=99.7
Q ss_pred HHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHHHHH
Q 005144 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (712)
Q Consensus 58 ~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (712)
....+.+++.+.-....++.+....|+..|-.++.+-++=..+++.. ...|-.++..... ++.+++.|+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE~aa 91 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLRELST 91 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHHHHH
Confidence 34445555666522223466678999999999999866666666533 4555555533222 227999999
Q ss_pred HHHHHhc-CChhhHHHHHhC--CChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 005144 138 FALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (712)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (712)
++|+... ++|.....+... ..+..+..-|.......... ...++..-+.+|.-|....... ...++..|.+
T Consensus 92 rII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ 165 (315)
T 3qml_C 92 RVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSEDL-----PIYSTVVLQN 165 (315)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHH
Confidence 9999998 999887766643 44444444443311110000 1156666777888887643222 2456778888
Q ss_pred hhcCC--CHHHHHHHHHHHHHhh
Q 005144 215 LLEFT--DTKVQRAAAGALRTLA 235 (712)
Q Consensus 215 lL~~~--~~~v~~~a~~~L~~L~ 235 (712)
++... ++.++..++..+..+-
T Consensus 166 ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 166 VYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHc
Confidence 88766 8888888888877665
No 166
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=80.06 E-value=35 Score=40.42 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhh--ccCChhhHHHHHHHHHHHhcCC----cchhhhhhhcCCh
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAV 335 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l~~~~~l 335 (712)
++..|..|-..|.++-... .+...+...| .+.+..+|..|+..|.+..... +......++..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 6778888888887764322 1333333333 3447889999999999876321 1222223333344
Q ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHhhccCChhHHHHHHHHHHhcccCcchhHHHHhhC
Q 005144 336 RPLIEMLQ---SPDVQLREMSAFALGRLAQAGIA--HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 410 (712)
Q Consensus 336 ~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 410 (712)
+.+..... ...+.++...+.++..++....- -.+.++.|++++.+ ++..+..++.+|..|+..-. ...
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~------~~~ 168 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVV------TFQ 168 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH------TSC
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHc------ccc
Confidence 44433321 14688898999999998882211 23566777777765 55667788888888764210 000
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHhh-------------------hhhhHHHHHHHHHHHhc
Q 005144 411 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALALAHLC 471 (712)
Q Consensus 411 ~i~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~Lv~ll~~-------------------~~~~v~~~a~~~L~~l~ 471 (712)
.... ......+.. +... -..++..+..++.. .++.+...++.++.+..
T Consensus 169 ~~~~-----~r~~~l~~~-------l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 169 TLPP-----QRRRDIQQT-------LTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp CSCH-----HHHHHHHHH-------HHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chHH-----HHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 0000 000000000 0000 11122222333322 34567778888888776
Q ss_pred CCCcccchhhcc--CchHHHHHHhcCCCchhhhhhHHHHHhhhccc
Q 005144 472 SPDDQRTIFIDG--GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 515 (712)
Q Consensus 472 ~~~~~~~~l~~~--~~~~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 515 (712)
...+....+ +. ..++.+..++. ++.++..|..+|..+....
T Consensus 236 ~Wi~~~~i~-~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 236 DWVSMSHIT-AENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTSCHHHHH-TTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred hccCHHHHH-hccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 544432222 22 25677776665 6789999999999999754
No 167
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.91 E-value=1e+02 Score=35.74 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHhhcCChhcHH-HHHhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005144 220 DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (712)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (712)
+......++|+++.++..-.+..+ .+. ..+++.|+.+.... ...++...+++++..+..-... .... ...+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L-~~vl 568 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFL-KTVV 568 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH-HHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHH-HHHH
Confidence 578899999999999743222111 222 23577777777543 2335555668888875431111 1111 2245
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhc--C-ChHHHHHHhC-------CCCHHHHHHHHHHHHHHHH
Q 005144 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR--G-AVRPLIEMLQ-------SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~-~l~~L~~ll~-------~~~~~v~~~a~~~L~~l~~ 362 (712)
..|++.+.+.++.++..|+.++..++. +++..++.. | ..|.+-.++. .-.++-......+++.++.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~---~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQ---KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHH---HTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 566666777789999999999999985 444444321 1 2233333332 2345545555556666555
No 168
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.47 E-value=25 Score=35.21 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=76.3
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHH
Q 005144 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---AGIA 366 (712)
Q Consensus 290 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~ 366 (712)
.++++.++++-.+.+.++|++++..|...+....+.. ..+++.|..++++.++.+.+.+..+..++-. ..+.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588889999888899999999999999886433332 3467888899999999999988888777665 3333
Q ss_pred hcCC---------------hHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 367 HNGG---------------LVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 367 ~~~~---------------i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
..+. -..++.+..+.+..++..+++++..+
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 3332 12355556778899999999988776
No 169
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=76.76 E-value=23 Score=33.91 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhcCChhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc--CChHHH
Q 005144 221 TKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPV 296 (712)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~l~~L 296 (712)
.+-...++..|.-++. +-..-..++. ...+..|+ +.....+.+++.+.++|+.....||.....+.+. .++..+
T Consensus 42 ~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 3456677777877774 3333333333 22333333 2234567899999999999999999877766652 334433
Q ss_pred HHhhcc-------CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHH
Q 005144 297 IGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLA 361 (712)
Q Consensus 297 ~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~ 361 (712)
..-|.. ....+.+.-+.+|-.|...... + ....+..|.+++... ++.++..++..+..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 333322 2335556666666666653211 1 134556666666444 6777776666555443
No 170
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=76.67 E-value=1.3e+02 Score=35.56 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcCCcchhhh---------hhh
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVH---------IVQ 331 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~---------l~~ 331 (712)
++.+...-++.+.++....+ ...++.++-++- +.+...++.+-.++.+....+.-.... .+-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 56666666777777644321 235555554442 223455667777776655432111000 111
Q ss_pred cCChHHHHHH----hCCCCHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccc
Q 005144 332 RGAVRPLIEM----LQSPDVQLREMSAFALGRLAQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 332 ~~~l~~L~~l----l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 398 (712)
...++.++.+ +.+.++.++.-+...-..+-. ........+..|+..+-+++..-...|+.+|..|+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 3445555544 477888888777666555554 222233445566666656665555668888887764
No 171
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=76.64 E-value=3 Score=33.22 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=30.1
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999876
No 172
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.21 E-value=75 Score=29.71 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=91.6
Q ss_pred HHHHHHhhhhhhcccccchHHhHHHHHHHHHHHHHhhc--ChhhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHH
Q 005144 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (712)
Q Consensus 55 ~~~~v~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (712)
..+.-.++++.|.+.-... + +.+...+.-..+++- ++..-.. .++.++++..+.+. ++
T Consensus 10 ~~~~~~~v~~lln~A~~~~--~-~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~------------~v 69 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIAS--P-STKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNM------------EV 69 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCC--H-HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCH------------HH
T ss_pred cccHHHHHHHHHHHhhhcC--c-HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChH------------HH
Confidence 4445566677777664433 3 357777777777655 3443333 47778887655444 89
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh-------cCCcc-----
Q 005144 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSSI----- 199 (712)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~-------~~~~~----- 199 (712)
|...+..+...+ ..++.... .++.|..++++.+. .+...++.+..++-. .++..
T Consensus 70 rk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 70 RKQVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999998 66654333 46778888875443 677666655544431 12221
Q ss_pred hhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (712)
Q Consensus 200 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~ 235 (712)
..+-.-...=..++.+..+.+..++..+++.+-.+.
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 111111223345667778889999999998888765
No 173
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.70 E-value=7.7 Score=30.69 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=47.2
Q ss_pred CCCCCChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC------------ChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 606 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 606 ~~~~~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~------------~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
+.-.++++|...++.+|+.|+.+.|+..|..++.+++ +.+....++.- +......+.+.+++|+..+
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s-dv~~E~~vf~av~~Wv~~d 82 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD-GVPCSQNPTEAIEAWINFN 82 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT-CEETTSCHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Confidence 3446889999999999999999999999999987654 23333333332 2234455777788887544
No 174
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=63.64 E-value=97 Score=28.95 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh
Q 005144 264 AIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (712)
Q Consensus 264 ~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 342 (712)
+.+...+.-+..+... ++..- ..+++.++.+..+.+.++|+..+..+...+...++. -..+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4666666666665443 23322 235677777777778899999999998887543332 234668888888
Q ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHhcCC---------------hHHHHHhhccCChhHHHHHHHHHHhc
Q 005144 343 QSPDVQLREMSAFALGRLAQ---AGIAHNGG---------------LVPLLKLLDSKNGSLQHNAAFALYGL 396 (712)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~---------------i~~L~~ll~~~~~~v~~~a~~~L~~l 396 (712)
++.++.+.+.+..+..++-. ..+...+. -..++++..+.+..++..+++++..+
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 98899999988888777766 33333332 12355556778899999999888775
No 175
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=63.42 E-value=6.7 Score=32.72 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKL 677 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~v 677 (712)
++.+|+..++..|..|+.+.|.+.|.+|+.+++..-
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 678999999999999999999999999999887654
No 176
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=61.10 E-value=15 Score=30.08 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+++..++..|..++.+.|.+.|.+|+.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 67889999999999999999999999998754
No 177
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=57.41 E-value=18 Score=28.91 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIM 671 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~ 671 (712)
++.+|+..++..|..++.+.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 678899999999999999999999999974
No 178
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=57.40 E-value=13 Score=30.08 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 67899999999999999999999999998765
No 179
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=57.36 E-value=28 Score=28.04 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIME 672 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~ 672 (712)
++.+|+..++..|..++.+.|.+.|.+|+.+
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999875
No 180
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=56.39 E-value=24 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIM 671 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~ 671 (712)
++.+|+..++..|..++.+.|.+.|.+|+.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 678999999999999999999999999874
No 181
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=55.14 E-value=60 Score=27.92 Aligned_cols=70 Identities=4% Similarity=0.020 Sum_probs=52.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (712)
++..|.+-|.+.++.++..|+.+|-.+..+ .......+.....+..|+.++.. .++.|+..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455788888999999999999999988863 23445566666677778887765 57788888887775554
No 182
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=52.28 E-value=1.9e+02 Score=28.81 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005144 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (712)
Q Consensus 206 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (712)
.++++.++.+-.+.+.++++..+..|...+....+.. ..+++.|..++.++++.|.+.++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4688899999988999999999999998886333332 22467788888888999999999888887
No 183
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=51.36 E-value=36 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYI 670 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 670 (712)
++.+++..++..|..|+.+.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 67899999999999999999999999986
No 184
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=46.97 E-value=21 Score=40.97 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=115.1
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcc--cCCccccchhHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVI 182 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~~~~~v~ 182 (712)
+.-|+++--+... +||..|-.+|.... .-+..+.. +++.+++.|+.. +.+ .+-.
T Consensus 135 l~dL~~Ls~S~Y~------------~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~------~~~i 191 (997)
T 1vsy_5 135 LVDIIQLATSLYP------------DIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHD------YMKI 191 (997)
T ss_dssp HHHHHHHHTSSCH------------HHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCS------CHHH
T ss_pred HHHHHHHhcCchH------------HHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCC------HHHH
Confidence 3445555555555 89999999998888 44444433 367888888662 111 1555
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcH-HHHHhCCCHHHHHHhhcCC
Q 005144 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSE 261 (712)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~ll~~~ 261 (712)
..|+.+|..-.....-.+..-.....++.|++....+.+.++..+-.+...+........ -.+.+... +.-+..+
T Consensus 192 KGaLy~L~~k~~~~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~----~~~i~~~ 267 (997)
T 1vsy_5 192 QVILNVLLIKKIHRKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQA----FLPLAPP 267 (997)
T ss_dssp HHHHHHTTSHHHHHHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGG----TGGGCCS
T ss_pred HHHHHHHhhhhhhhHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHH----HhccCCC
Confidence 666666541111001111222233466777777766677776655555444442111100 00111111 1222222
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHHhhc-cCC--hhhHHHHHHHHHHHhcCCcchhhhhhhcCChH
Q 005144 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS-SCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (712)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~-~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (712)
+..+ ..+......- ....+....+ .+....++++++ +.+ +.....++..+.++....+ ......++.
T Consensus 268 d~~i-~~~~~~~~~~---~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~ 339 (997)
T 1vsy_5 268 DGTI-NLQVEAVKLA---KKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVF 339 (997)
T ss_dssp CSST-TSHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHH
T ss_pred cHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHH
Confidence 2111 1111111111 1111122111 234445556663 346 8888888888677664221 123345677
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 337 PLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
.+++.+.++.|.+|..|..++..+..
T Consensus 340 ~~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 340 SIISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 88888999999999999999988777
No 185
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=46.91 E-value=4.8 Score=33.75 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 674 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 674 (712)
++.+|+..++..|..++.+.|.+.|.+|+.+++
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999987664
No 186
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=46.15 E-value=61 Score=37.28 Aligned_cols=214 Identities=13% Similarity=0.037 Sum_probs=108.9
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC----CCCHHHHHHHHHHHH--HHHH---
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALG--RLAQ--- 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~--~l~~--- 362 (712)
++.-|+.+-.+.-.++|..|-.+|......-+.....+ +|.+++.|+ +.+.+-.+-|+.+|. .+..
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 34455665566678899999999998876544444433 466666662 344444455555544 2222
Q ss_pred -HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcccC---cchhHHHHhhCccccccccchhhhhhhhHHHHHHHHHHH
Q 005144 363 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 438 (712)
Q Consensus 363 -~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~l~~l~~ 438 (712)
..-.-...++.|++..+..++.++..+-.+...+... +.... +.+...+..+....................-..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1111123456667776777777777666554444321 21111 111111111110000000000000000000000
Q ss_pred hh---hhhhHHHHHHHHhhh-h--hhHHHHHHHHHHHhcCCCcccchhhccCchHHHHHHhcCCCchhhhhhHHHHHhhh
Q 005144 439 KI---HGRVLNHLLYLMRVA-E--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 512 (712)
Q Consensus 439 ~~---~~~~~~~Lv~ll~~~-~--~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~L~ 512 (712)
.+ -.++...|+.+.++. + -.....++..|.++....+. ......+..+++.+.+++|.+|..|..++..+.
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 11 123444455655332 3 45667777776666544331 123455788999999999999999999987666
Q ss_pred cc
Q 005144 513 NK 514 (712)
Q Consensus 513 ~~ 514 (712)
..
T Consensus 365 ~~ 366 (997)
T 1vsy_5 365 NK 366 (997)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 187
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.88 E-value=32 Score=29.07 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~ 277 (712)
++..|.+-+.+.++.++..|+.+|-.+..+ .+.....+.....+..|+.++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999863 23456667777788889988864 36789998888876664
No 188
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.80 E-value=26 Score=29.28 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=51.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (712)
++..|.+-|.+.++.++..|+..|-.++.+. ......+.....+..+..++...++.|+..++..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567888888999999999999998887532 233445555566777777777678888888888776654
No 189
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=44.90 E-value=1.8e+02 Score=26.31 Aligned_cols=140 Identities=9% Similarity=-0.036 Sum_probs=86.7
Q ss_pred HHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc-C-ChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHH
Q 005144 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (712)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (712)
..+..++.++.- +.+..|+..+.... . .++. ++.+-.++... +.|.+...
T Consensus 58 ~~~~~L~~s~~~------------E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~-------~nWd~~D~ 109 (220)
T 2b6c_A 58 QEIEAYYQKTER------------EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQK-------AWWDSVDA 109 (220)
T ss_dssp HHHHHHHTSSSH------------HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTT-------CSHHHHHH
T ss_pred HHHHHHHcCchh------------HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccC-------CcHHHHHH
Confidence 344556665544 78888888887665 2 2221 22222223222 23677776
Q ss_pred HHHHHHHHhhcCCcchhHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHH
Q 005144 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (712)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 264 (712)
.+.++..+...++. ...+.+...+.+++.-+++.|+..+..-. ....... .++.+-.++.+++.-
T Consensus 110 ~a~~~~~~~~~~~~--------~~~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~-----~~~i~~~~~~d~~~y 174 (220)
T 2b6c_A 110 WRKFFGSWVALHLT--------ELPTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTEEFF 174 (220)
T ss_dssp HHHHHHHHHHHSGG--------GHHHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHHChH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHH-----HHHHHHHhCCChHHH
Confidence 66667777654443 12346788899999988888777553222 1122211 245555578888999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHH
Q 005144 265 IHYEAVGVIGNLVHSSPNIKKEVLA 289 (712)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (712)
|+....|.|..++..+++.....+.
T Consensus 175 V~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 175 IQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 9999999999999998886555443
No 190
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.75 E-value=57 Score=28.03 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=52.3
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. ......+....++..|+.++.. .++.|+..++..+...+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556777788888999888888888777543 3445566667788888888854 678898888887776655
No 191
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.50 E-value=71 Score=26.59 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=49.6
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. ......+....++..++.+++..++.|+..+...+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3555666677778888888877777666433 2334455566777778787766788888888888777665
No 192
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=43.15 E-value=61 Score=30.28 Aligned_cols=104 Identities=10% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCChh-cHHHHHhCCCHHHHHHhh----cC----CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005144 218 FTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILML----RS----EDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (712)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~ll----~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (712)
+.++..+..++++++|+-. ++. .+..+........++..+ .+ .+..++..++..+.|++...-..+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 4567888999999999986 444 444443322223333322 22 2567888899999999753111000
Q ss_pred HcCChHHHHHhhc---------cCChhhHHHHHHHHHHHhcCCcch
Q 005144 289 AAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDSDC 325 (712)
Q Consensus 289 ~~~~l~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~ 325 (712)
+......+++.+. ..+++....++.+++++...++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 0112333444443 236788889999999998655443
No 193
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=42.75 E-value=21 Score=30.93 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 005144 610 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 642 (712)
Q Consensus 610 ~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~ 642 (712)
++.+++.+++..|+.|..+.|+..|..++.+++
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~ 164 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHA 164 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999998864
No 194
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.61 E-value=1.5e+02 Score=24.88 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=55.1
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCCc-chhhhhhhcCChHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-+.+.++.++..|+..|-.+..+.. .....+....++..|+.++.. .++.|+..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45567777888889999998888887775433 444567777888999999863 578999999999888776
No 195
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.91 E-value=89 Score=26.30 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=55.0
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. ......+....++..|+.++.. .++.|+..++..+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777778889999999998888887653 3455667778889999998863 478999998888877665
No 196
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.82 E-value=1.2e+02 Score=27.67 Aligned_cols=70 Identities=7% Similarity=0.118 Sum_probs=51.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (712)
++..|.+-|.+.++.++..|+.+|-.++.+-. .....+.....+..|..+++. .++.|+..++..|...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 45688888999999999999999998886222 234555566667777777654 46788888888776664
No 197
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=41.43 E-value=56 Score=28.37 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=54.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~ 277 (712)
++..|.+-+.+.++.++..|+.+|-.+..+. ......+.+...+..|+.++.. .+..|+..++..|..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999998632 3445567777788888888863 36789998888887664
No 198
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=41.19 E-value=5.1e+02 Score=30.58 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHHH---------------HHHHh
Q 005144 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ---------------AGIAH 367 (712)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~---------------~~~~~ 367 (712)
+..+...-..++.++....+ ...++.++=++ .+.+...+..+-.++.+-+. ...+-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 34455555555666543211 34455544433 34455666777777766655 11122
Q ss_pred cCChHHHHHh----hccCChhHHHHHHHHHHhcc
Q 005144 368 NGGLVPLLKL----LDSKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 368 ~~~i~~L~~l----l~~~~~~v~~~a~~~L~~l~ 397 (712)
....+.++.+ +++.++.++..+...-..+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF 428 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAF 428 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3344444433 36777888777777666653
No 199
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.64 E-value=54 Score=28.00 Aligned_cols=64 Identities=5% Similarity=0.008 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHhCh---------------HhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005144 610 VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 674 (712)
Q Consensus 610 ~~~~~~~~l~~~A~~~~~---------------~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 674 (712)
++...+..++..+.+..- ..+...-.+|+ .++.+++..++..|.-.+...|.+.|.+|++..+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566777788888876651 12233333444 3789999999999999999999999999998765
Q ss_pred H
Q 005144 675 D 675 (712)
Q Consensus 675 ~ 675 (712)
.
T Consensus 127 ~ 127 (159)
T 2ast_A 127 K 127 (159)
T ss_dssp S
T ss_pred c
Confidence 4
No 200
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.73 E-value=69 Score=27.01 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=54.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (712)
++..|.+-+.+.++.++..|+.+|-.+..+. ......+....++..|++++.. .++.|+..++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4568888888999999999999999888632 2335666667788888888864 467899888888876653
No 201
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=38.65 E-value=81 Score=27.32 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=55.2
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcCC-cchhhhhhhcCChHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Q 005144 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 362 (712)
++..|..-|.+.++.++..|+..|-.+..+. ......+....++..|+.++.. .++.|+..++..+...+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566778888889999999999888887653 3455567777889999999852 468999999888887766
No 202
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=37.57 E-value=17 Score=30.63 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYI 670 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 670 (712)
++.+|+..++..|..|+.+.|.+.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 67899999999999999999999999875
No 203
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=37.07 E-value=1.2e+02 Score=25.14 Aligned_cols=81 Identities=6% Similarity=0.007 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCC---CChhhHHHHHHHHHHhCh---------------HhHHHHHHHHHHhcCChhhHHHHHHHH
Q 005144 593 WEVFELMMRFIYTGSVD---VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELS 654 (712)
Q Consensus 593 ~~~~~~~l~~~Y~~~~~---~~~~~~~~l~~~A~~~~~---------------~~l~~~c~~~l~~~~~~~~~~~~~~~a 654 (712)
...++.+++-.-.+.++ ++...+..+++.+.+..- ..+..+-.+|+ .++.+++++++..|
T Consensus 24 S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AA 101 (141)
T 1fs1_B 24 SVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAA 101 (141)
T ss_dssp CHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHH
Confidence 34566666542123333 567888888888887762 12233333444 37899999999999
Q ss_pred HHcCcHHHHHHHHHHHHHHHH
Q 005144 655 EAFHAISLRHTCILYIMEHFD 675 (712)
Q Consensus 655 ~~~~~~~l~~~~~~~i~~~~~ 675 (712)
.-.+...|.+.|.++++....
T Consensus 102 nyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 102 NYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHHc
Confidence 999999999999999988654
No 204
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=36.65 E-value=17 Score=30.39 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 674 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 674 (712)
++.+++..++..|..|+.+.|.+.|.+|+.+++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999998754
No 205
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=34.12 E-value=2.7e+02 Score=25.30 Aligned_cols=129 Identities=9% Similarity=0.025 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHH-HHHHHHhhcCCcchhHHHhcC
Q 005144 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA-DAITNLAHENSSIKTRVRMEG 207 (712)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~ 207 (712)
+.+..|+..+.... ..++ .++.+-.++...+ .|.+....+ .+++.+...++. .
T Consensus 76 E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~-------nWd~~D~~a~~~~g~~~~~~p~--------~ 131 (232)
T 3jxy_A 76 EFQAAALDIMQKYKKHINET---------HIPFLEELIVTKS-------WWDSVDSIVPTFLGDIFLKHPE--------L 131 (232)
T ss_dssp HHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSC-------CHHHHHHHTTTHHHHHHHHCGG--------G
T ss_pred HHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCC-------ChHHHHHhhHHHHHHHHHHCHH--------H
Confidence 78887777776443 1222 2334444554322 356665443 455555554433 1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005144 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (712)
Q Consensus 208 ~i~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (712)
..+.+...+.++++-+++.|+..+.... ...... ...+.+..++.+++.-|+....|+|..++..+++.....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~--~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYK--QKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCG--GGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHH--hCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3457788899999988888776653221 111111 134556677888999999999999999999988876655
Q ss_pred HHc
Q 005144 288 LAA 290 (712)
Q Consensus 288 ~~~ 290 (712)
++.
T Consensus 205 l~~ 207 (232)
T 3jxy_A 205 VQN 207 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 206
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=33.09 E-value=31 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIME 672 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~ 672 (712)
++.+|+..++..|..++.+.|.+.|.+++.+
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 6789999999999999999999999998654
No 207
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.15 E-value=44 Score=31.27 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLAVKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
..+..+++++.|+-.++.+ +..+........++..+.+.-.+........++..++..+.|++......+. +....
T Consensus 105 ~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~ 181 (253)
T 3gae_A 105 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELL 181 (253)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHH
T ss_pred hHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHH
Confidence 7899999999999977773 4444332223344444422111110111237788888899999852111110 12233
Q ss_pred HHHHHhhcC---------CCHHHHHHHHHHHHHhhcCC
Q 005144 210 PPLVELLEF---------TDTKVQRAAAGALRTLAFKN 238 (712)
Q Consensus 210 ~~L~~lL~~---------~~~~v~~~a~~~L~~L~~~~ 238 (712)
..+++.+.. .+++....++-+|++|...+
T Consensus 182 ~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 182 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 445555542 37788889999999998633
No 208
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=30.63 E-value=1.4e+02 Score=27.66 Aligned_cols=32 Identities=6% Similarity=0.281 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+++..++..|..++.+.|.+.|.+|+.++
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999865
No 209
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=30.31 E-value=1.4e+02 Score=30.19 Aligned_cols=98 Identities=7% Similarity=-0.061 Sum_probs=63.0
Q ss_pred ccCChhhHHHHHHHHHHHhcCCcch-hhhhhhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHh---c
Q 005144 301 SSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQAGIAH---N 368 (712)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~---~ 368 (712)
.+..+..+.-++++++|+... +.. +..+........+++.+.. .+..++.+++..+.|++...... .
T Consensus 272 ~~~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~ 350 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 350 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCT
T ss_pred CCCChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH
Confidence 345678888899999999763 343 3333322234555655521 24568888888899999822221 2
Q ss_pred CChHHHHHhhc---------cCChhHHHHHHHHHHhcccC
Q 005144 369 GGLVPLLKLLD---------SKNGSLQHNAAFALYGLADN 399 (712)
Q Consensus 369 ~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~ 399 (712)
.....+.+++. ..+.+....++.+|++|...
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 23345666665 35889999999999999753
No 210
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=30.00 E-value=39 Score=35.52 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=58.7
Q ss_pred ccEEEEecCccchhhHHHhhhcCHHH-HHhccC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CCCCCChh-hHHHHHH
Q 005144 545 SDVTFLVEGRRFYAHRICLLASSDAF-RAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLR 620 (712)
Q Consensus 545 ~D~~~~~~~~~~~~h~~il~~~s~~f-~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~l~~ 620 (712)
.-|.+-++|..|...+..|...-+-+ ..++.. .+-....+++-+ |=++..|+.+|.|+.+ |++..+.+ ....+.+
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~ 130 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSE 130 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHH
T ss_pred CEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHH
Confidence 35778899999999999887432211 111110 011123345666 5699999999999999 99886554 3567889
Q ss_pred HHHHhChHhHH
Q 005144 621 AADQYLLEGLK 631 (712)
Q Consensus 621 ~A~~~~~~~l~ 631 (712)
=|++|+++.+.
T Consensus 131 E~~f~~i~~~~ 141 (514)
T 2r9r_B 131 EIRFYELGEEA 141 (514)
T ss_dssp HHHHTTCCHHH
T ss_pred HHHhcCCCHHH
Confidence 99999998754
No 211
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=29.73 E-value=19 Score=29.52 Aligned_cols=32 Identities=0% Similarity=0.055 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+|+..++..|..++.+.|.+.|.+|+.+.
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999998764
No 212
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.87 E-value=1.6e+02 Score=26.80 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHHHHhhhcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHH
Q 005144 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (712)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (712)
+..|.+-|.+.++ .++..|+.+|-.+. .++.+...+....++..|..++....+ .+|+.
T Consensus 47 ~ral~krl~~~n~------------~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~-------~~Vk~ 107 (226)
T 3zyq_A 47 VNSIKKKVNDKNP------------HVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE-------VNVRN 107 (226)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC-------HHHHH
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC-------HHHHH
Confidence 5667777777666 89999999988888 456677777777888888888864332 28888
Q ss_pred HHHHHHHHHhh
Q 005144 184 RAADAITNLAH 194 (712)
Q Consensus 184 ~a~~~L~~l~~ 194 (712)
.++..+...+.
T Consensus 108 kil~li~~W~~ 118 (226)
T 3zyq_A 108 KILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877764
No 213
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=26.46 E-value=61 Score=17.01 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHHcCcHHHHHHHHHHH
Q 005144 649 SMYELSEAFHAISLRHTCILYI 670 (712)
Q Consensus 649 ~~~~~a~~~~~~~l~~~~~~~i 670 (712)
.++-+|..+..++|...|++-+
T Consensus 3 kvmcyaqrhsspellrrcldnc 24 (26)
T 2plx_B 3 KVMCYAQRHSSPELLRRCLDNC 24 (26)
T ss_dssp HHHHHHBCCCCHHHHHHHHHHH
T ss_pred eEEeehhhcCCHHHHHHHHhcc
Confidence 4566788888899988888643
No 214
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.75 E-value=1.3e+02 Score=30.37 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhcCChhcHHHHHhCCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHHhhc
Q 005144 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLS 301 (712)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~ 301 (712)
+..++-.|+-+..+.+.. +.+..++ ..+.+..+..+.-++++++|+... +.....+... .....+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHH
Confidence 555777777666533221 1222232 333455788999999999999865 4433333322 22344554442
Q ss_pred c--------CChhhHHHHHHHHHHHhcCCcchhhhhhhcCChHHHHHHhC---------CCCHHHHHHHHHHHHHHHH
Q 005144 302 S--------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQ 362 (712)
Q Consensus 302 ~--------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 362 (712)
. .+..++..++..+.|++......+. +...+..+..++. ..+++....++-||++|..
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 2356778888889998853211111 1233445555554 2588899999999999886
No 215
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=25.46 E-value=53 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 005144 610 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 642 (712)
Q Consensus 610 ~~~~~~~~l~~~A~~~~~~~l~~~c~~~l~~~~ 642 (712)
++.+++..++.+|+.|..+.|+..|..++..++
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999998864
No 216
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.34 E-value=80 Score=31.20 Aligned_cols=103 Identities=7% Similarity=-0.001 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC-ChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 005144 131 EVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (712)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (712)
..+..+++++.|+-.++...+.+.... ....+++.+...-..........++..++..+.|++......+. .....
T Consensus 214 ~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~ 290 (362)
T 3l3f_X 214 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELL 290 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHH
T ss_pred hHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHH
Confidence 788999999999997777544444332 12334444422211111111227788888888999852111010 01233
Q ss_pred HHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 005144 210 PPLVELLE---------FTDTKVQRAAAGALRTLAF 236 (712)
Q Consensus 210 ~~L~~lL~---------~~~~~v~~~a~~~L~~L~~ 236 (712)
..+.+.+. ..+++....++-+|++|..
T Consensus 291 ~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 291 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 45666665 2578899999999999985
No 217
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.30 E-value=1.8e+02 Score=28.68 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=60.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCcchhhhhhhc-CChHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHh---cC
Q 005144 302 SCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS--------PDVQLREMSAFALGRLAQAGIAH---NG 369 (712)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~l~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~---~~ 369 (712)
+..+..+.-+++++.|+..+ +.....++.. .....+++.+.+ .+..++.+++..+.|++.....+ ..
T Consensus 210 ~~~~~n~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~e 288 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 288 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTT
T ss_pred CCChhHHHHHHHHHHHhccC-cchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHH
Confidence 44677888899999999764 3423333322 223344444411 24568888888899999822222 22
Q ss_pred ChHHHHHhhc---------cCChhHHHHHHHHHHhccc
Q 005144 370 GLVPLLKLLD---------SKNGSLQHNAAFALYGLAD 398 (712)
Q Consensus 370 ~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 398 (712)
....+.+++. ..+.+....++.+|++|..
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 3345666665 3588999999999999975
No 218
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.77 E-value=34 Score=30.43 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=61.9
Q ss_pred HhhhhhhcccccchHHhHHHHHHHHHHHHHhhcCh-----hhHHHHHhcCCHHHHHhhhcCCCCCccccCCCcccHHHHH
Q 005144 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-----EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (712)
Q Consensus 60 ~~lv~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (712)
|.++.++.+.....-.|.......++....+..++ .+... .+|.++..+-+..-. ...+|+
T Consensus 43 Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-----LipsvLtCll~k~l~---------~~~LRd 108 (196)
T 4atg_A 43 PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-----ILPSLLTCVIGKSIV---------DDDVRK 108 (196)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-----HHHHHHHHHHCTTCC---------CHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-----HHHHHHHHHHhcccC---------HHHHHH
Confidence 33444443333222235556666677777776654 33333 467777776544331 117999
Q ss_pred HHHHHHHHhcC---C--hhhHHHHHhCCChHHHHHHHhcccCCccccchhHHHHHHHHHHHHHhh
Q 005144 135 GSAFALGLLAV---K--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (712)
Q Consensus 135 ~a~~~L~~l~~---~--~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (712)
.|+..++.|+. + +..+.. .+..+.+.+.++... ....-.|+..|..+..
T Consensus 109 ~AA~lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~dp~~~------l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 109 MSADIVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMDPNRS------EDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTCTTSC------HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCccCchHHHH-----HHHHHHHHHcCCCCC------hHHHHHHHHHHHHhHH
Confidence 99999999992 2 333322 455666666554431 2566667777766653
No 219
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.31 E-value=1.3e+02 Score=27.20 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=46.5
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcc
Q 005144 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQ-------AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA 397 (712)
Q Consensus 334 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~ 397 (712)
++..|.+-|.+.++.++..|+..|-.++. ..+.+...+..|+.++. ..+..|+..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45677788889999999999999888887 33444456666777764 345778887777776554
No 220
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=22.24 E-value=1.2e+02 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005144 642 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 673 (712)
Q Consensus 642 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~ 673 (712)
++.+++..++..|..++.+.|.+.|.+|+.++
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 57789999999999999999999999999864
Done!