BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005145
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
+VA++ + Y ++Y EA AL + G++HPAVA+ LA +Y + GK
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
+E++ C+ AL I EK + P ++A L++++ + ++ + E+ ++AL+IY
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
G VA + + Y G Y D+ +K +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 111/265 (41%), Gaps = 19/265 (7%)
Query: 284 AIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
A+P+ +Q++E G +H +A + L Y + + + L ++++ L
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKTL 77
Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402
G+ P V T LA + + ++ EA+ C+ AL+I + + A + L+C
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLC 137
Query: 403 ETKGDHEAALEHLVLASMTMIAND---QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
+ +G E +E+ ++ + A D VA ++ YL +Y +A Y++ L
Sbjct: 138 QNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 460 TA-----FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
T F + G+N P +++ + K R+S Y E + K P
Sbjct: 197 TRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSAPYGEYG--SWYKACKVDSP- 249
Query: 515 EIASGLTDVSSIYESMNELEQAIKL 539
+ + L + ++Y +LE A L
Sbjct: 250 TVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM--QLG 315
GK + L+ +A +Y G+Y EA P+ ++++EI +E L KF + QL
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------REKVLGKFHPDVAKQLS 131
Query: 316 DTYAML----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371
+ A+L G+ E Y LE+ LG DP V +T LA +++ ++ +A+
Sbjct: 132 NL-ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 372 F 372
Sbjct: 191 L 191
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 536 AIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS-KLRAIGE 593
A+ L ++AL+ G VA + + ++Y Y ++ +A++ + + +G+
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
A LN + + +R EA L + A I E+ G +HPD SNLA
Sbjct: 80 DHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQ 138
Query: 654 AIGREE---------------KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698
G+ E +LG +P+V K LA + G+ + + E L
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 699 ANSR----VNND 706
A+ + VN D
Sbjct: 199 AHEKEFGSVNGD 210
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
+VA++ + Y ++Y EA AL + G++HPAVA+ LA +Y + GK
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
+E++ C+ AL I EK + P ++A L +++ + ++ + E+ ++AL+IY
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
G VA + + Y G Y D+ +K +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 111/265 (41%), Gaps = 19/265 (7%)
Query: 284 AIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
A+P+ +Q++E G +H +A + L Y + + + L ++++ L
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKTL 77
Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402
G+ P V T LA + + ++ EA+ C+ AL+I + + A + L+C
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC 137
Query: 403 ETKGDHEAALEHLVLASMTMIAND---QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
+ +G E +E+ ++ + A D VA ++ YL +Y +A Y++ L
Sbjct: 138 QNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 460 TA-----FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
T F + G+N P +++ + K R+S Y E + K P
Sbjct: 197 TRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSAPYGEYG--SWYKACKVDSP- 249
Query: 515 EIASGLTDVSSIYESMNELEQAIKL 539
+ + L + ++Y +LE A L
Sbjct: 250 TVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM--QLG 315
GK + L+ +A +Y G+Y EA P+ ++++EI +E L KF + QL
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------REKVLGKFHPDVAKQLN 131
Query: 316 DTYAML----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371
+ A+L G+ E Y LE+ LG DP V +T LA +++ ++ +A+
Sbjct: 132 NL-ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 372 F 372
Sbjct: 191 L 191
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG------ 656
LN + L + EA L +A +I E+ G HP +NLA Y G
Sbjct: 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 657 ---------REEKLGTANPDVDDEKRRLAELLKEAGRV 685
RE+ LG +PDV + LA L + G+
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 536 AIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS-KLRAIGE 593
A+ L ++AL+ G VA + + ++Y Y ++ +A++ + + +G+
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
A LN + + +R EA L + A I E+ G +HPD +NLA
Sbjct: 80 DHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138
Query: 654 AIGREE---------------KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698
G+ E +LG +P+V K LA + G+ + + E L
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 699 ANSR----VNND 706
A+ + VN D
Sbjct: 199 AHEKEFGSVNGD 210
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 386 PASLEEAADRRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDT 441
PA L R L L+ + ++G +E A L L + + +VA++ +
Sbjct: 24 PARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV 78
Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
Y ++Y +A AL + G++HPAVA+ LA +Y + GK +E++ C+ AL
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGI 560
I EK V G ++A L +++ + ++ + E+ Q+AL+IY G VA
Sbjct: 139 EIREK-VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197
Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISK 587
+ + Y G + + +K +++
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTR 224
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 44/249 (17%)
Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLEN 326
LH + Y S G+Y A+P+ +Q++E G +H +A + L Y + ++
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKD 87
Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
+ L ++++ LG+ P V T LA + + ++ EA+ C+ AL+I +
Sbjct: 88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147
Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
+ A + L+C+ +G
Sbjct: 148 DHPDVAKQLNNLALLCQNQG---------------------------------------- 167
Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS-YCENALRIYE 505
+Y+E + YQ+AL ++T G + P VA LA Y + GK +++++ Y E R +E
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227
Query: 506 KPVPGVPPE 514
+ V E
Sbjct: 228 REFGSVDDE 236
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 2/188 (1%)
Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
PA L Y G+ + C+ AL EK G ++A+ L ++ +Y
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-TSGHDHPDVATMLNILALVYRDQ 82
Query: 531 NELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
N+ + A LL AL I G+ VA + V+Y G Y ++ K A+
Sbjct: 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649
+ + LN + L C + E ++ A I + + GP P+ +NLA
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Query: 650 GTYDAIGR 657
Y G+
Sbjct: 203 SCYLKQGK 210
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGD 316
GK + L+ +A +Y G+Y EA P+ ++++EI G++H +AK ++ L
Sbjct: 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL-- 161
Query: 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
G+ E Y LE+ + LG DP V +T LA +++ +F +A+
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625
+ Y G Y + K A+ L LN + L + +A L +
Sbjct: 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94
Query: 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLGTANPDVDD 670
A +I E+ G HP +NLA Y G RE+ LG +PDV
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Query: 671 EKRRLAELLKEAGR 684
+ LA L + G+
Sbjct: 155 QLNNLALLCQNQGK 168
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
A ++G+ Y YDEA YQKAL E +P A + L + Y + G
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDA 550
E+ Y + AL +Y P A ++ + Y + ++AI+ QKAL++Y N+A
Sbjct: 61 EAIEYYQKALELY--------PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Query: 551 PGQQS 555
+Q+
Sbjct: 112 EAKQN 116
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
+G + +G+ A+ H A +T+ N DA + ++G+ +D A AY +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYI-----NLGNVLKEARIFDRAVAAYLR 228
Query: 458 ALTAFKTNKGENHPAVASVF-----VRLA-DMYNRTGKLRES--KSYCE--NALR----- 502
AL+ N H +A V+ + LA D Y R +L+ +YC NAL+
Sbjct: 229 ALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 503 -----IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
Y + P A L ++++I +E+A++L +KAL+++ + S +
Sbjct: 288 AEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Query: 558 AGIEAQMG-----VMYY-----MLGNYSDSYDSFKNAISKLR 589
A + Q G +M+Y + ++D+Y + N + +++
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
+++ A + +G +R + EA+E + A + PD + Y NLA
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALV 112
Query: 654 AIGREEKLGTA-------NPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 696
A G E A NPD+ + L LLK GR+ KA L+ +
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
+G +GD++ A+E+ A + D A ++G+ Y YDEA YQK
Sbjct: 7 LGNAYYKQGDYDEAIEYY------QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
AL E P A + L + Y + G E+ Y + AL + P A
Sbjct: 61 AL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRS-------A 103
Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKI 546
++ + Y + ++AI+ QKAL++
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
A ++G+ Y YDEA YQKAL E P A + L + Y + G
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYD 52
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
E+ Y + AL + P A ++ + Y + ++AI+ QKAL++
Sbjct: 53 EAIEYYQKALEL--DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 98
Query: 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
A +G YY G+Y ++ + ++ A+
Sbjct: 99 --DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
A ++G+ Y YDEA YQKAL E P A + L + Y + G
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
E+ Y + AL + P A ++ + Y + ++AI+ QKAL++
Sbjct: 61 EAIEYYQKALEL--------DPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
+G +GD++ A+E+ A + + N+ +A ++G+ Y YDEA YQK
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKA-LELDPNNAEAWY-----NLGNAYYKQGDYDEAIEYYQK 68
Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
AL E P A + L + Y + G E+ Y + AL +
Sbjct: 69 AL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
A + L + Y + G E+ Y + AL + P A ++ + Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNN-AEAWYNLGNAYYKQGDY 59
Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
++AI+ QKAL++ A +G YY G+Y ++ + ++ A+
Sbjct: 60 DEAIEYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568
PG P A L ++++I +E+A++L +KAL+++ + S +A + Q G +
Sbjct: 2 PGSCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628
L +Y K AI R S F A + MG + + A++ + A
Sbjct: 61 EALMHY-------KEAI--------RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 629 ILEQECGPYHPDTLGVYSNLAGTY-------DAIGREEKLGTANPDVDDEKRRLAELLK 680
I +P +SNLA + +AI PD D LA L+
Sbjct: 106 I--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
+EA Y+KAL F P A+ LA + + GKL+E+ + + A+RI
Sbjct: 26 EEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72
Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
A +++ + + M +++ A++ +A++I S +A I G
Sbjct: 73 ----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 29/202 (14%)
Query: 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT 487
D+ +SV G L YD+AG + KA E P +++LA + R
Sbjct: 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA--------KELDPENIFPYIQLACLAYRE 351
Query: 488 GKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545
K + CE ++ P P P A LTD + +++ + + AI+L K
Sbjct: 352 NKFDD----CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407
Query: 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYS-DSYDSFKNAISKLRAIGERKSAFFGVALN 604
IY GI +G + N + +++ N + K + R S + L
Sbjct: 408 IY----------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLA 456
Query: 605 QMGLACVQRYSINEAVELFEEA 626
QM L Q+ I+EA+ LFEE+
Sbjct: 457 QMKL---QQEDIDEAITLFEES 475
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
A ++G+ Y YDEA YQKAL E P A + L + Y + G
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRI 503
E+ Y + AL +
Sbjct: 61 EAIEYYQKALEL 72
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 35/194 (18%)
Query: 406 GDHEAALE-HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
GD+ A++ H ++ ND+ E S ++G+T + R+DEA ++ LT +
Sbjct: 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG-NLGNTLKVMGRFDEAAICCERHLTLAR- 157
Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
+ + + L ++Y+ GK ++ PG +++ LT
Sbjct: 158 -QLGDRLSEGRALYNLGNVYHAKGKHLGQRN-------------PGKFGDDVKEALT--- 200
Query: 525 SIYESMNELEQAIKLLQKALKIYNDAP--GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582
+A++ Q+ LK+ D G Q G +G YY+LG++ + + +
Sbjct: 201 ----------RAVEFYQENLKLMRDLGDRGAQGRACG---NLGNTYYLLGDFQAAIEHHQ 247
Query: 583 NAISKLRAIGERKS 596
+ R G+R +
Sbjct: 248 ERLRIAREFGDRAA 261
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----KSAFFGVALNQMGLAC 610
T++ I +Q+G Y+ LG+Y+ + K+ ++ +++ +R S G L MG
Sbjct: 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG--- 140
Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANP---- 666
+EA + E L ++ G + +Y NL Y A G+ LG NP
Sbjct: 141 ----RFDEAA-ICCERHLTLARQLGDRLSEGRALY-NLGNVYHAKGKH--LGQRNPGKFG 192
Query: 667 -DVDDEKRRLAELLKE 681
DV + R E +E
Sbjct: 193 DDVKEALTRAVEFYQE 208
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
Y N + A + +AL I + P + ++GV+ + G + + F +A+
Sbjct: 169 YGLTNNSKLAERFFSQALSIAPEDPF-------VXHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 587 KLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
K++AIG + + LN +G C + EA++ +A ++ Q Y +G
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY--SAIGYI 279
Query: 646 SNLAGTYD 653
+L G ++
Sbjct: 280 HSLXGNFE 287
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
A ++G+ Y YDEA YQKAL E P A + L + Y + G
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYD 54
Query: 492 ESKSYCENALRI 503
E+ Y + AL +
Sbjct: 55 EAIEYYQKALEL 66
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597
K + K + I+ D P + +A A +G L + +S D++ A+++L I + +
Sbjct: 138 KYMHKGISIWLDVPLE--ALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 195
Query: 598 FFG-----VALNQMGLACVQRYSINE------AVELFEEARSILEQECGPYHPDTL 642
+ V+L + L R S+++ A+E FE+ +S LE+E G PD L
Sbjct: 196 AYTKASARVSLENITLKLGYR-SVSDLTPAEIAIEAFEQVQSYLEKEDGMARPDGL 250
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 619 AVELFEEARSILEQECGP--------------YHPDTLGVYSNLAGTYDAIGREEKL-GT 663
++EL +E SIL C P YH +Y G ++ +G E++ G
Sbjct: 151 SIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGI 210
Query: 664 ANPDVD-------DEKRRLAELLKEAGRVRSRKA--QSLETLLDANSRVNNDGI 708
NP++D E R EL+K A R+ + T + S +NN G+
Sbjct: 211 NNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGV 264
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
A + L + Y + G +++ Y + AL + P AS ++ + Y +
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALEL--------DPNN-ASAWYNLGNAYYKQGDY 59
Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
++AI+ QKAL++ A + G YY G+Y + + ++ A+
Sbjct: 60 QKAIEYYQKALEL-------DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,306,067
Number of Sequences: 62578
Number of extensions: 709063
Number of successful extensions: 1484
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 72
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)