Query 005145
Match_columns 712
No_of_seqs 1499 out of 3713
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 18:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.9E-43 8.4E-48 350.9 25.5 429 192-702 53-488 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 5.4E-42 1.2E-46 342.8 28.6 418 203-702 98-522 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 5.4E-30 1.2E-34 286.6 45.1 374 220-657 126-557 (615)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-30 2.8E-35 291.7 38.1 387 190-631 130-573 (615)
5 KOG1840 Kinesin light chain [C 100.0 1.4E-28 3E-33 255.5 45.2 381 217-657 84-465 (508)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-29 4E-34 299.1 42.3 420 200-702 444-869 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-29 1.1E-33 295.2 41.2 424 191-698 469-899 (899)
8 PRK11447 cellulose synthase su 100.0 1.9E-28 4.2E-33 291.5 45.3 449 192-702 117-703 (1157)
9 PRK11447 cellulose synthase su 100.0 1.5E-27 3.2E-32 284.0 43.6 439 199-698 159-739 (1157)
10 KOG2002 TPR-containing nuclear 100.0 1.7E-26 3.8E-31 244.4 34.3 440 205-701 254-711 (1018)
11 KOG1840 Kinesin light chain [C 100.0 6.3E-25 1.4E-29 228.3 43.2 329 271-602 163-494 (508)
12 KOG2002 TPR-containing nuclear 100.0 2.3E-25 4.9E-30 236.0 37.0 432 204-700 147-594 (1018)
13 KOG0547 Translocase of outer m 100.0 9.9E-26 2.2E-30 221.3 30.6 400 184-633 112-570 (606)
14 PRK15174 Vi polysaccharide exp 99.9 1.4E-24 3.1E-29 241.9 41.1 363 219-657 40-406 (656)
15 PRK15174 Vi polysaccharide exp 99.9 3.8E-24 8.2E-29 238.6 36.2 332 194-590 49-384 (656)
16 KOG0547 Translocase of outer m 99.9 1.5E-23 3.3E-28 206.1 35.4 426 219-699 113-566 (606)
17 PRK10049 pgaA outer membrane p 99.9 1.3E-23 2.9E-28 239.3 40.7 425 214-702 8-459 (765)
18 PRK09782 bacteriophage N4 rece 99.9 6.9E-22 1.5E-26 224.9 41.2 452 192-702 49-709 (987)
19 PRK10049 pgaA outer membrane p 99.9 6.5E-22 1.4E-26 225.5 37.6 418 194-671 22-463 (765)
20 KOG1130 Predicted G-alpha GTPa 99.9 3E-22 6.6E-27 192.6 25.0 329 271-616 23-371 (639)
21 KOG1130 Predicted G-alpha GTPa 99.9 9.1E-22 2E-26 189.4 24.0 329 313-657 22-370 (639)
22 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4.1E-25 199.2 36.8 307 223-587 37-347 (389)
23 KOG1126 DNA-binding cell divis 99.9 8.7E-22 1.9E-26 202.1 23.9 302 265-629 317-620 (638)
24 KOG2003 TPR repeat-containing 99.9 9.7E-22 2.1E-26 191.1 22.8 138 221-379 201-338 (840)
25 PRK09782 bacteriophage N4 rece 99.9 9E-21 1.9E-25 215.9 34.3 379 201-657 356-759 (987)
26 KOG1126 DNA-binding cell divis 99.9 4E-21 8.7E-26 197.2 26.9 306 219-587 315-620 (638)
27 PRK14574 hmsH outer membrane p 99.9 7.8E-19 1.7E-23 196.1 45.5 430 213-702 26-516 (822)
28 PRK11788 tetratricopeptide rep 99.9 7.7E-20 1.7E-24 194.5 35.0 309 267-629 37-347 (389)
29 KOG2003 TPR repeat-containing 99.9 9E-21 2E-25 184.4 24.3 403 214-684 230-709 (840)
30 KOG2076 RNA polymerase III tra 99.9 1.9E-18 4.2E-23 182.8 43.5 381 220-657 138-541 (895)
31 PLN03081 pentatricopeptide (PP 99.9 2.8E-19 6E-24 203.5 36.0 430 192-700 92-558 (697)
32 KOG1155 Anaphase-promoting com 99.9 4E-18 8.7E-23 167.3 38.0 352 221-629 164-536 (559)
33 KOG0548 Molecular co-chaperone 99.9 5.1E-19 1.1E-23 177.4 31.5 405 223-702 4-458 (539)
34 PLN03218 maturation of RBCL 1; 99.8 2.7E-16 5.8E-21 180.8 52.2 407 219-699 368-783 (1060)
35 KOG1155 Anaphase-promoting com 99.8 8.5E-18 1.8E-22 165.0 33.9 339 265-657 164-522 (559)
36 KOG1173 Anaphase-promoting com 99.8 3.5E-18 7.5E-23 172.0 31.5 379 221-657 49-504 (611)
37 KOG2076 RNA polymerase III tra 99.8 1.6E-17 3.4E-22 176.1 35.2 377 267-699 141-555 (895)
38 KOG4162 Predicted calmodulin-b 99.8 4.8E-17 1E-21 169.6 38.1 427 219-702 321-786 (799)
39 KOG1173 Anaphase-promoting com 99.8 8.7E-18 1.9E-22 169.2 30.6 290 309-654 245-535 (611)
40 KOG0548 Molecular co-chaperone 99.8 1.3E-17 2.7E-22 167.5 31.0 387 193-655 8-473 (539)
41 PRK14574 hmsH outer membrane p 99.8 1.4E-16 3.1E-21 178.2 40.8 425 192-679 39-527 (822)
42 PLN03218 maturation of RBCL 1; 99.8 1.5E-15 3.4E-20 174.6 45.6 344 223-628 439-782 (1060)
43 PLN03077 Protein ECB2; Provisi 99.8 3.9E-16 8.5E-21 182.1 39.5 426 194-699 229-720 (857)
44 KOG0624 dsRNA-activated protei 99.8 1.1E-15 2.3E-20 144.6 34.3 364 260-679 33-422 (504)
45 KOG1129 TPR repeat-containing 99.8 6.6E-17 1.4E-21 151.7 25.7 288 215-551 175-463 (478)
46 PLN03081 pentatricopeptide (PP 99.8 1.4E-15 3.1E-20 173.2 42.0 405 223-704 89-529 (697)
47 KOG1129 TPR repeat-containing 99.8 7E-18 1.5E-22 158.2 18.0 283 317-651 188-472 (478)
48 PRK04841 transcriptional regul 99.8 1.8E-14 3.9E-19 170.4 51.4 405 220-657 340-746 (903)
49 PRK04841 transcriptional regul 99.8 6.4E-15 1.4E-19 174.2 44.2 411 197-632 351-763 (903)
50 KOG0624 dsRNA-activated protei 99.8 2.5E-15 5.5E-20 142.1 29.5 324 214-587 31-370 (504)
51 KOG1174 Anaphase-promoting com 99.7 1.9E-14 4.1E-19 139.6 35.5 415 221-702 43-503 (564)
52 KOG1941 Acetylcholine receptor 99.7 4.6E-15 1E-19 141.4 30.6 344 269-629 10-360 (518)
53 PLN03077 Protein ECB2; Provisi 99.7 5E-15 1.1E-19 172.9 35.8 427 194-698 58-582 (857)
54 PF13429 TPR_15: Tetratricopep 99.7 2.2E-17 4.7E-22 166.4 13.1 266 270-588 13-278 (280)
55 PF13429 TPR_15: Tetratricopep 99.7 9.1E-17 2E-21 161.9 16.4 267 312-630 12-278 (280)
56 TIGR00540 hemY_coli hemY prote 99.7 1.2E-14 2.6E-19 154.1 32.5 316 221-593 84-405 (409)
57 PRK12370 invasion protein regu 99.7 2.3E-15 4.9E-20 165.7 27.8 263 224-545 261-534 (553)
58 KOG1174 Anaphase-promoting com 99.7 1.9E-14 4.1E-19 139.6 30.3 315 271-657 202-520 (564)
59 KOG0495 HAT repeat protein [RN 99.7 1.5E-14 3.3E-19 147.7 31.1 374 213-672 508-888 (913)
60 KOG1941 Acetylcholine receptor 99.7 4.2E-14 9.2E-19 134.9 31.6 346 221-588 6-361 (518)
61 KOG1127 TPR repeat-containing 99.7 8.5E-15 1.8E-19 156.2 29.4 423 208-698 479-995 (1238)
62 KOG1156 N-terminal acetyltrans 99.7 4.4E-13 9.5E-18 137.7 40.2 423 215-701 35-513 (700)
63 PRK12370 invasion protein regu 99.7 6E-15 1.3E-19 162.4 29.0 249 406-701 275-537 (553)
64 cd05804 StaR_like StaR_like; a 99.7 1.5E-14 3.3E-19 151.7 29.8 341 216-596 1-345 (355)
65 KOG4162 Predicted calmodulin-b 99.7 2.8E-14 6E-19 149.2 30.7 373 201-629 337-783 (799)
66 cd05804 StaR_like StaR_like; a 99.7 8.1E-14 1.7E-18 146.2 33.8 338 261-636 2-343 (355)
67 KOG0495 HAT repeat protein [RN 99.7 6.1E-13 1.3E-17 136.2 37.8 296 350-702 550-849 (913)
68 PRK11189 lipoprotein NlpI; Pro 99.7 1E-14 2.2E-19 147.2 25.1 221 238-503 42-265 (296)
69 TIGR00540 hemY_coli hemY prote 99.7 7.2E-14 1.6E-18 148.2 32.7 315 265-632 84-402 (409)
70 COG2956 Predicted N-acetylgluc 99.7 1.9E-13 4.2E-18 128.9 31.3 271 228-547 42-312 (389)
71 COG3063 PilF Tfp pilus assembl 99.7 7.5E-15 1.6E-19 132.4 21.1 208 306-550 33-240 (250)
72 TIGR02521 type_IV_pilW type IV 99.7 9.5E-15 2.1E-19 143.2 23.8 203 307-546 30-232 (234)
73 PRK11189 lipoprotein NlpI; Pro 99.7 1.1E-14 2.5E-19 146.8 24.5 243 364-654 40-283 (296)
74 COG3063 PilF Tfp pilus assembl 99.7 9.9E-15 2.2E-19 131.7 20.8 202 470-702 31-239 (250)
75 PRK10747 putative protoheme IX 99.7 6.6E-14 1.4E-18 147.6 29.6 306 221-588 84-391 (398)
76 KOG0550 Molecular chaperone (D 99.7 1.2E-14 2.7E-19 141.2 21.7 296 268-629 52-350 (486)
77 TIGR02521 type_IV_pilW type IV 99.7 2.4E-14 5.3E-19 140.2 24.4 205 262-503 28-232 (234)
78 KOG1156 N-terminal acetyltrans 99.7 4.1E-12 8.9E-17 130.7 40.7 388 186-626 40-465 (700)
79 COG2956 Predicted N-acetylgluc 99.7 4.9E-13 1.1E-17 126.2 30.9 281 312-645 39-319 (389)
80 KOG1125 TPR repeat-containing 99.6 8.7E-15 1.9E-19 148.6 18.7 269 270-577 290-561 (579)
81 PRK10747 putative protoheme IX 99.6 8.2E-13 1.8E-17 139.3 34.1 302 265-630 84-391 (398)
82 KOG0550 Molecular chaperone (D 99.6 8.6E-14 1.9E-18 135.4 22.7 291 219-549 47-353 (486)
83 KOG1127 TPR repeat-containing 99.6 1.2E-12 2.6E-17 140.0 32.7 459 192-701 567-1069(1238)
84 KOG2376 Signal recognition par 99.6 1.8E-11 4E-16 124.7 39.4 415 222-702 13-490 (652)
85 KOG1125 TPR repeat-containing 99.6 3.8E-14 8.2E-19 144.0 19.8 266 224-536 288-561 (579)
86 KOG2376 Signal recognition par 99.6 5.9E-12 1.3E-16 128.2 34.8 423 192-657 51-507 (652)
87 PF12569 NARP1: NMDA receptor- 99.6 1.1E-11 2.5E-16 131.6 38.6 297 265-595 4-342 (517)
88 KOG1915 Cell cycle control pro 99.6 2E-10 4.4E-15 113.8 39.5 425 217-702 69-539 (677)
89 KOG3785 Uncharacterized conser 99.6 4.6E-11 9.9E-16 114.1 33.8 400 233-702 34-493 (557)
90 KOG3785 Uncharacterized conser 99.5 3.8E-11 8.2E-16 114.6 27.6 379 196-625 31-453 (557)
91 KOG2300 Uncharacterized conser 99.5 1.3E-09 2.9E-14 108.5 38.9 418 219-657 44-540 (629)
92 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.5E-14 108.6 37.9 377 197-628 83-499 (677)
93 PF14938 SNAP: Soluble NSF att 99.5 3E-12 6.6E-17 128.2 20.0 240 392-648 35-277 (282)
94 PF12569 NARP1: NMDA receptor- 99.5 5.8E-10 1.3E-14 118.7 36.8 301 220-555 3-343 (517)
95 TIGR03302 OM_YfiO outer membra 99.4 2.6E-11 5.7E-16 118.9 22.2 187 427-629 28-232 (235)
96 KOG2300 Uncharacterized conser 99.4 4.8E-08 1E-12 97.6 42.9 420 264-700 6-475 (629)
97 TIGR03302 OM_YfiO outer membra 99.4 3.5E-11 7.6E-16 118.0 20.7 182 346-546 29-232 (235)
98 PLN02789 farnesyltranstransfer 99.4 6.5E-11 1.4E-15 119.0 22.8 208 275-530 47-268 (320)
99 PF14938 SNAP: Soluble NSF att 99.4 6.9E-11 1.5E-15 118.5 21.7 227 349-584 34-263 (282)
100 PLN02789 farnesyltranstransfer 99.4 3.4E-10 7.3E-15 113.9 25.8 223 438-701 43-304 (320)
101 COG3071 HemY Uncharacterized e 99.3 3.6E-09 7.9E-14 103.7 29.1 303 222-589 85-392 (400)
102 KOG3617 WD40 and TPR repeat-co 99.3 1.1E-07 2.3E-12 100.7 39.7 391 270-702 831-1362(1416)
103 KOG2047 mRNA splicing factor [ 99.3 9.6E-08 2.1E-12 98.8 37.9 321 346-697 345-685 (835)
104 KOG4340 Uncharacterized conser 99.2 6.4E-09 1.4E-13 97.4 24.3 381 197-631 20-445 (459)
105 COG3071 HemY Uncharacterized e 99.2 4.5E-08 9.8E-13 96.1 29.6 301 267-630 86-391 (400)
106 KOG2047 mRNA splicing factor [ 99.2 9.1E-07 2E-11 91.8 40.2 432 222-697 103-613 (835)
107 PRK14720 transcript cleavage f 99.2 2.7E-09 5.9E-14 118.6 23.9 286 343-702 24-309 (906)
108 PRK15359 type III secretion sy 99.2 5E-10 1.1E-14 99.6 14.0 126 370-529 13-138 (144)
109 PRK15359 type III secretion sy 99.2 5.9E-10 1.3E-14 99.1 14.1 127 494-655 13-139 (144)
110 KOG3617 WD40 and TPR repeat-co 99.2 3.6E-07 7.7E-12 96.9 36.3 341 222-629 758-1174(1416)
111 PRK15179 Vi polysaccharide bio 99.2 1.6E-09 3.5E-14 119.7 20.5 163 317-506 58-220 (694)
112 KOG1128 Uncharacterized conser 99.2 1.6E-08 3.4E-13 106.3 26.2 251 238-551 361-621 (777)
113 PF10345 Cohesin_load: Cohesin 99.2 2E-05 4.4E-10 88.1 52.5 464 219-696 57-603 (608)
114 PRK14720 transcript cleavage f 99.2 8.7E-09 1.9E-13 114.6 25.1 251 213-504 23-284 (906)
115 PRK15179 Vi polysaccharide bio 99.1 4.9E-09 1.1E-13 116.0 21.9 160 441-629 58-217 (694)
116 PRK10370 formate-dependent nit 99.1 8.8E-09 1.9E-13 96.8 18.5 152 356-549 22-176 (198)
117 KOG3060 Uncharacterized conser 99.1 7.6E-08 1.7E-12 88.7 23.6 209 406-654 26-237 (289)
118 KOG4340 Uncharacterized conser 99.1 3.4E-07 7.5E-12 86.1 28.1 225 276-541 21-265 (459)
119 PRK10370 formate-dependent nit 99.1 8.2E-09 1.8E-13 97.0 17.8 150 398-588 22-174 (198)
120 KOG1128 Uncharacterized conser 99.1 7.5E-09 1.6E-13 108.7 18.0 223 309-592 399-621 (777)
121 KOG3060 Uncharacterized conser 99.1 2.1E-07 4.6E-12 85.9 25.2 196 322-550 26-224 (289)
122 PF13424 TPR_12: Tetratricopep 99.0 2.4E-09 5.3E-14 84.3 9.3 77 428-505 1-77 (78)
123 PF10345 Cohesin_load: Cohesin 99.0 7.5E-05 1.6E-09 83.5 48.1 365 282-657 38-464 (608)
124 COG5010 TadD Flp pilus assembl 99.0 3.5E-08 7.6E-13 91.9 17.8 166 427-625 62-227 (257)
125 COG5010 TadD Flp pilus assembl 99.0 2.3E-08 5E-13 93.1 16.2 165 346-542 63-227 (257)
126 KOG1839 Uncharacterized protei 99.0 9.4E-08 2E-12 107.4 23.7 397 239-644 641-1143(1236)
127 PF13424 TPR_12: Tetratricopep 99.0 5.4E-09 1.2E-13 82.3 9.9 77 470-548 1-77 (78)
128 PRK15363 pathogenicity island 99.0 2.4E-08 5.2E-13 86.9 14.3 104 429-549 32-135 (157)
129 KOG3616 Selective LIM binding 98.9 5.9E-06 1.3E-10 86.8 33.1 211 352-587 767-1024(1636)
130 TIGR02552 LcrH_SycD type III s 98.9 1.7E-08 3.6E-13 89.4 12.7 108 426-550 11-118 (135)
131 KOG0553 TPR repeat-containing 98.9 1.8E-08 3.9E-13 95.6 13.0 119 516-657 80-198 (304)
132 KOG1585 Protein required for f 98.9 3.2E-06 7E-11 77.6 26.1 220 392-623 31-250 (308)
133 PRK15363 pathogenicity island 98.9 2.7E-08 5.8E-13 86.6 12.1 103 262-381 32-134 (157)
134 CHL00033 ycf3 photosystem I as 98.9 3E-08 6.5E-13 91.3 13.3 122 470-597 31-152 (168)
135 KOG0553 TPR repeat-containing 98.9 3.2E-08 6.9E-13 93.9 13.4 121 390-533 79-199 (304)
136 PF13525 YfiO: Outer membrane 98.9 8.4E-07 1.8E-11 84.1 23.3 183 265-494 5-198 (203)
137 KOG3616 Selective LIM binding 98.9 1.6E-05 3.4E-10 83.7 33.6 227 267-545 663-910 (1636)
138 PF13525 YfiO: Outer membrane 98.9 1E-06 2.2E-11 83.6 23.5 109 431-550 4-123 (203)
139 TIGR02552 LcrH_SycD type III s 98.9 3.7E-08 8E-13 87.2 12.6 111 453-587 4-114 (135)
140 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3E-12 86.9 16.0 127 515-646 33-159 (168)
141 COG2909 MalT ATP-dependent tra 98.8 2.1E-05 4.5E-10 85.6 34.0 341 217-583 343-684 (894)
142 KOG1585 Protein required for f 98.8 3.8E-06 8.1E-11 77.1 24.0 216 429-657 28-243 (308)
143 KOG2471 TPR repeat-containing 98.8 1.4E-06 2.9E-11 87.6 22.8 410 265-706 100-656 (696)
144 COG2909 MalT ATP-dependent tra 98.8 0.00035 7.5E-09 76.4 42.3 266 352-626 417-685 (894)
145 PF04733 Coatomer_E: Coatomer 98.8 6.6E-08 1.4E-12 96.2 13.2 257 228-549 8-268 (290)
146 PF09976 TPR_21: Tetratricopep 98.8 9.8E-07 2.1E-11 78.8 19.0 123 444-585 23-145 (145)
147 PRK10866 outer membrane biogen 98.8 3.5E-06 7.5E-11 81.9 23.6 186 310-542 34-237 (243)
148 PRK10866 outer membrane biogen 98.7 4.6E-06 1E-10 81.0 24.0 179 431-625 31-237 (243)
149 PRK02603 photosystem I assembl 98.7 1.6E-07 3.5E-12 86.7 12.8 113 470-595 31-150 (172)
150 PF09976 TPR_21: Tetratricopep 98.7 1E-06 2.2E-11 78.7 17.1 133 223-377 13-145 (145)
151 PRK02603 photosystem I assembl 98.7 1.2E-06 2.7E-11 80.8 17.8 118 511-640 29-153 (172)
152 PLN03088 SGT1, suppressor of 98.7 2.7E-07 5.7E-12 95.5 14.4 114 520-656 5-118 (356)
153 KOG1586 Protein required for f 98.7 1.6E-05 3.4E-10 72.7 23.5 198 362-587 26-224 (288)
154 COG4783 Putative Zn-dependent 98.7 1.7E-06 3.6E-11 87.7 19.0 165 429-646 303-467 (484)
155 PLN03088 SGT1, suppressor of 98.7 2.8E-07 6E-12 95.3 14.1 99 435-550 5-103 (356)
156 PF04733 Coatomer_E: Coatomer 98.7 1.6E-07 3.4E-12 93.5 11.5 249 200-503 14-265 (290)
157 COG4783 Putative Zn-dependent 98.7 9.6E-07 2.1E-11 89.4 16.5 148 393-587 307-454 (484)
158 COG3898 Uncharacterized membra 98.6 0.00031 6.7E-09 69.3 32.4 302 227-587 90-392 (531)
159 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.8E-07 1.2E-11 77.4 12.8 107 433-550 3-109 (119)
160 KOG1586 Protein required for f 98.6 7.9E-06 1.7E-10 74.6 19.6 199 402-629 24-224 (288)
161 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.4E-11 75.6 13.5 103 518-629 3-105 (119)
162 KOG1070 rRNA processing protei 98.6 3.2E-05 7E-10 87.3 26.4 210 346-587 1454-1663(1710)
163 PF12895 Apc3: Anaphase-promot 98.5 4.4E-07 9.5E-12 72.4 8.9 83 278-376 2-84 (84)
164 PF12895 Apc3: Anaphase-promot 98.5 5.4E-07 1.2E-11 71.9 8.9 84 444-543 1-84 (84)
165 KOG2471 TPR repeat-containing 98.5 3.6E-06 7.8E-11 84.6 16.2 337 219-584 238-681 (696)
166 KOG1070 rRNA processing protei 98.5 5.4E-05 1.2E-09 85.6 26.9 208 263-503 1456-1663(1710)
167 cd00189 TPR Tetratricopeptide 98.5 6.1E-07 1.3E-11 73.3 9.3 97 434-547 2-98 (100)
168 KOG0543 FKBP-type peptidyl-pro 98.5 2.6E-06 5.7E-11 84.7 14.9 145 219-381 206-357 (397)
169 PF13414 TPR_11: TPR repeat; P 98.5 7.2E-07 1.6E-11 68.2 8.5 64 432-503 3-67 (69)
170 KOG0543 FKBP-type peptidyl-pro 98.5 2.4E-06 5.2E-11 85.0 14.1 138 394-548 210-357 (397)
171 PF13414 TPR_11: TPR repeat; P 98.5 6.3E-07 1.4E-11 68.5 8.1 64 309-380 4-68 (69)
172 KOG1839 Uncharacterized protei 98.5 3.5E-05 7.7E-10 87.4 24.5 387 312-702 669-1131(1236)
173 PF12688 TPR_5: Tetratrico pep 98.4 5.2E-06 1.1E-10 70.1 13.0 102 433-545 2-103 (120)
174 COG4785 NlpI Lipoprotein NlpI, 98.4 6.1E-05 1.3E-09 68.1 19.7 205 262-503 62-266 (297)
175 KOG3081 Vesicle coat complex C 98.4 0.00013 2.7E-09 68.5 22.1 236 359-657 17-256 (299)
176 cd00189 TPR Tetratricopeptide 98.4 2.2E-06 4.7E-11 69.9 9.9 96 394-503 2-97 (100)
177 PF12688 TPR_5: Tetratrico pep 98.4 6.2E-06 1.3E-10 69.7 12.5 102 266-378 2-103 (120)
178 PF10300 DUF3808: Protein of u 98.4 0.00078 1.7E-08 72.4 30.6 187 444-653 200-400 (468)
179 PRK10803 tol-pal system protei 98.3 8.8E-06 1.9E-10 79.6 13.7 107 433-550 143-250 (263)
180 COG0457 NrfG FOG: TPR repeat [ 98.3 0.0011 2.3E-08 64.3 28.8 231 278-549 36-268 (291)
181 PRK10803 tol-pal system protei 98.3 6.1E-06 1.3E-10 80.7 11.8 97 276-383 154-250 (263)
182 KOG1464 COP9 signalosome, subu 98.3 0.00047 1E-08 64.6 23.2 279 405-702 40-331 (440)
183 COG0457 NrfG FOG: TPR repeat [ 98.3 0.0014 3.1E-08 63.4 29.3 226 321-587 36-265 (291)
184 COG4785 NlpI Lipoprotein NlpI, 98.3 4E-05 8.6E-10 69.3 14.9 203 390-629 63-266 (297)
185 COG3898 Uncharacterized membra 98.3 0.0061 1.3E-07 60.5 35.6 299 271-629 90-392 (531)
186 PRK15331 chaperone protein Sic 98.2 2.9E-05 6.4E-10 68.1 13.4 103 426-545 31-133 (165)
187 PF13432 TPR_16: Tetratricopep 98.2 3.1E-06 6.7E-11 63.7 6.3 63 312-382 1-63 (65)
188 PRK11906 transcriptional regul 98.2 5.2E-05 1.1E-09 77.7 16.9 159 311-499 258-432 (458)
189 KOG4555 TPR repeat-containing 98.2 7.7E-05 1.7E-09 61.6 14.4 102 221-337 43-144 (175)
190 KOG3081 Vesicle coat complex C 98.2 0.00065 1.4E-08 63.8 22.2 246 229-541 16-265 (299)
191 KOG4555 TPR repeat-containing 98.2 4.7E-05 1E-09 62.8 12.8 102 433-547 44-145 (175)
192 PRK10153 DNA-binding transcrip 98.2 4.3E-05 9.4E-10 82.5 16.5 131 476-629 341-482 (517)
193 KOG1464 COP9 signalosome, subu 98.2 0.0002 4.4E-09 67.0 18.1 241 237-488 42-286 (440)
194 PF13432 TPR_16: Tetratricopep 98.2 1.3E-05 2.8E-10 60.3 8.7 59 397-461 2-60 (65)
195 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.3E-05 1.2E-09 78.1 15.5 119 398-542 175-293 (395)
196 PRK10153 DNA-binding transcrip 98.2 5.1E-05 1.1E-09 81.9 16.1 131 310-461 341-482 (517)
197 PRK11906 transcriptional regul 98.2 5.6E-05 1.2E-09 77.4 15.3 165 223-417 257-432 (458)
198 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.3E-05 7.2E-10 79.6 13.8 120 356-500 175-294 (395)
199 KOG1463 26S proteasome regulat 98.1 0.0064 1.4E-07 59.2 27.7 302 270-586 9-315 (411)
200 COG5159 RPN6 26S proteasome re 98.1 0.001 2.2E-08 62.9 21.8 232 355-592 8-240 (421)
201 COG4700 Uncharacterized protei 98.1 0.00047 1E-08 61.0 18.1 160 360-549 66-225 (251)
202 PF08631 SPO22: Meiosis protei 98.1 0.0064 1.4E-07 60.8 29.1 254 360-628 3-274 (278)
203 PRK15331 chaperone protein Sic 98.1 4.4E-05 9.6E-10 67.0 11.7 98 307-420 36-133 (165)
204 COG4105 ComL DNA uptake lipopr 98.1 0.00081 1.8E-08 63.5 20.8 175 431-621 33-225 (254)
205 PF08631 SPO22: Meiosis protei 98.1 0.0024 5.2E-08 63.8 25.9 253 319-586 4-274 (278)
206 KOG1463 26S proteasome regulat 98.1 0.0013 2.9E-08 63.8 22.1 261 355-623 9-272 (411)
207 COG1729 Uncharacterized protei 98.1 3.1E-05 6.8E-10 73.6 11.0 105 435-550 144-248 (262)
208 COG4105 ComL DNA uptake lipopr 98.1 0.00053 1.1E-08 64.8 18.8 173 310-497 36-227 (254)
209 PF10300 DUF3808: Protein of u 98.1 0.028 6.2E-07 60.5 35.4 175 401-597 197-386 (468)
210 KOG2796 Uncharacterized conser 98.0 0.001 2.2E-08 62.2 19.5 143 349-506 176-318 (366)
211 KOG4234 TPR repeat-containing 98.0 0.00015 3.3E-09 64.7 13.6 101 394-503 97-197 (271)
212 COG4235 Cytochrome c biogenesi 98.0 0.00021 4.6E-09 68.9 15.8 120 513-651 152-274 (287)
213 COG4235 Cytochrome c biogenesi 98.0 7.6E-05 1.6E-09 71.9 12.5 97 597-702 153-259 (287)
214 KOG4234 TPR repeat-containing 98.0 0.0001 2.2E-09 65.8 12.1 117 517-651 95-211 (271)
215 COG1729 Uncharacterized protei 98.0 3.8E-05 8.1E-10 73.1 9.3 105 269-384 145-249 (262)
216 KOG2796 Uncharacterized conser 97.9 0.017 3.7E-07 54.4 25.2 238 268-550 72-319 (366)
217 COG4700 Uncharacterized protei 97.9 0.001 2.2E-08 59.0 16.3 134 433-588 90-223 (251)
218 PF13512 TPR_18: Tetratricopep 97.9 0.00029 6.2E-09 60.6 12.6 120 558-702 10-131 (142)
219 KOG2041 WD40 repeat protein [G 97.9 0.035 7.5E-07 59.2 29.9 62 310-376 694-760 (1189)
220 COG5159 RPN6 26S proteasome re 97.9 0.024 5.3E-07 53.9 26.7 229 270-506 8-238 (421)
221 PF04184 ST7: ST7 protein; In 97.9 0.0018 4E-08 66.5 19.6 130 228-375 175-320 (539)
222 KOG2610 Uncharacterized conser 97.9 0.0033 7.1E-08 61.0 20.0 166 356-544 109-274 (491)
223 PF13512 TPR_18: Tetratricopep 97.9 0.0003 6.5E-09 60.5 11.9 108 265-383 10-132 (142)
224 PF14559 TPR_19: Tetratricopep 97.8 4.9E-05 1.1E-09 57.7 6.2 53 443-503 2-54 (68)
225 PF13374 TPR_10: Tetratricopep 97.8 3.8E-05 8.3E-10 51.7 4.9 41 600-640 2-42 (42)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 7.4E-05 1.6E-09 76.4 8.3 68 428-503 71-141 (453)
227 KOG4648 Uncharacterized conser 97.8 0.00013 2.7E-09 70.6 9.2 99 435-550 100-198 (536)
228 PF13371 TPR_9: Tetratricopept 97.8 0.00014 2.9E-09 56.1 7.8 59 438-504 1-59 (73)
229 PF14559 TPR_19: Tetratricopep 97.7 8.8E-05 1.9E-09 56.3 6.1 67 568-650 1-67 (68)
230 KOG2053 Mitochondrial inherita 97.7 0.14 2.9E-06 56.8 35.0 229 198-461 20-255 (932)
231 PF13371 TPR_9: Tetratricopept 97.7 0.00022 4.7E-09 55.0 8.1 70 564-649 1-70 (73)
232 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.0002 4.3E-09 73.4 9.6 71 470-546 71-141 (453)
233 KOG0985 Vesicle coat protein c 97.7 0.075 1.6E-06 59.3 29.2 141 310-500 1106-1246(1666)
234 PF02259 FAT: FAT domain; Int 97.7 0.088 1.9E-06 54.9 30.2 270 271-571 4-305 (352)
235 KOG0985 Vesicle coat protein c 97.7 0.17 3.7E-06 56.6 35.4 216 265-541 1104-1336(1666)
236 KOG2053 Mitochondrial inherita 97.6 0.18 3.9E-06 55.9 40.7 230 232-503 20-255 (932)
237 KOG1550 Extracellular protein 97.6 0.015 3.2E-07 64.2 23.7 282 280-629 227-538 (552)
238 PF02259 FAT: FAT domain; Int 97.6 0.064 1.4E-06 56.0 27.9 158 472-657 144-307 (352)
239 KOG4648 Uncharacterized conser 97.6 0.00036 7.9E-09 67.5 9.2 95 396-504 101-195 (536)
240 KOG0890 Protein kinase of the 97.5 0.24 5.3E-06 60.7 33.0 373 226-654 1388-1801(2382)
241 PF13281 DUF4071: Domain of un 97.5 0.039 8.4E-07 56.3 22.3 178 432-629 141-334 (374)
242 KOG2610 Uncharacterized conser 97.4 0.012 2.5E-07 57.3 17.2 160 442-625 113-272 (491)
243 KOG1550 Extracellular protein 97.4 0.037 8E-07 61.1 23.8 281 238-586 228-537 (552)
244 KOG4642 Chaperone-dependent E3 97.4 0.00093 2E-08 61.7 9.1 99 435-550 13-111 (284)
245 KOG1914 mRNA cleavage and poly 97.4 0.25 5.5E-06 51.6 35.6 138 262-419 17-164 (656)
246 PF12968 DUF3856: Domain of Un 97.4 0.031 6.6E-07 45.8 16.1 120 349-468 6-136 (144)
247 PF12968 DUF3856: Domain of Un 97.4 0.043 9.2E-07 45.0 16.8 120 516-635 6-135 (144)
248 PF09986 DUF2225: Uncharacteri 97.3 0.0033 7E-08 59.5 12.4 100 530-629 90-194 (214)
249 KOG4642 Chaperone-dependent E3 97.3 0.0012 2.5E-08 61.0 8.9 102 268-386 13-114 (284)
250 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0023 5.1E-08 62.0 11.3 106 264-382 80-185 (390)
251 PF10602 RPN7: 26S proteasome 97.3 0.0087 1.9E-07 55.0 14.8 112 470-588 32-143 (177)
252 KOG2041 WD40 repeat protein [G 97.3 0.34 7.4E-06 52.1 33.6 112 258-377 688-823 (1189)
253 PF10602 RPN7: 26S proteasome 97.3 0.0098 2.1E-07 54.6 15.0 126 414-547 18-143 (177)
254 PF13281 DUF4071: Domain of un 97.3 0.028 6E-07 57.3 19.1 206 324-548 115-336 (374)
255 PF13374 TPR_10: Tetratricopep 97.3 0.00058 1.3E-08 45.8 5.0 41 432-472 2-42 (42)
256 PF13428 TPR_14: Tetratricopep 97.3 0.00077 1.7E-08 45.7 5.3 42 601-650 2-43 (44)
257 PF04184 ST7: ST7 protein; In 97.2 0.024 5.2E-07 58.7 17.7 130 440-584 176-321 (539)
258 COG2976 Uncharacterized protei 97.2 0.086 1.9E-06 47.7 18.9 100 517-629 89-188 (207)
259 COG2976 Uncharacterized protei 97.2 0.039 8.5E-07 49.9 16.6 101 392-504 89-189 (207)
260 KOG3783 Uncharacterized conser 97.2 0.44 9.6E-06 50.1 28.5 218 311-548 270-522 (546)
261 KOG0890 Protein kinase of the 97.1 0.55 1.2E-05 57.9 30.0 320 270-632 1388-1734(2382)
262 PF03704 BTAD: Bacterial trans 97.1 0.025 5.5E-07 50.4 15.3 122 353-508 9-130 (146)
263 PF05843 Suf: Suppressor of fo 97.1 0.0068 1.5E-07 60.6 12.6 136 394-549 3-139 (280)
264 PF03704 BTAD: Bacterial trans 97.1 0.035 7.5E-07 49.5 16.0 108 268-383 9-129 (146)
265 KOG1538 Uncharacterized conser 97.0 0.13 2.9E-06 54.5 21.3 246 273-584 564-830 (1081)
266 KOG0545 Aryl-hydrocarbon recep 97.0 0.0071 1.5E-07 56.2 10.8 110 432-550 178-297 (329)
267 PF09986 DUF2225: Uncharacteri 97.0 0.011 2.4E-07 56.0 12.6 101 404-504 89-195 (214)
268 PF00515 TPR_1: Tetratricopept 97.0 0.0024 5.1E-08 40.4 5.2 30 600-629 1-30 (34)
269 PF06552 TOM20_plant: Plant sp 96.9 0.012 2.6E-07 52.5 11.0 84 448-548 7-111 (186)
270 KOG4507 Uncharacterized conser 96.9 0.039 8.4E-07 57.8 15.8 106 526-653 616-721 (886)
271 KOG0545 Aryl-hydrocarbon recep 96.9 0.011 2.4E-07 54.9 10.5 112 264-383 177-297 (329)
272 KOG1914 mRNA cleavage and poly 96.9 0.79 1.7E-05 48.1 40.0 436 212-701 11-503 (656)
273 KOG0551 Hsp90 co-chaperone CNS 96.8 0.013 2.8E-07 57.1 11.1 103 431-546 80-182 (390)
274 KOG3783 Uncharacterized conser 96.8 0.89 1.9E-05 47.9 27.0 248 357-629 238-520 (546)
275 PF13428 TPR_14: Tetratricopep 96.8 0.0024 5.2E-08 43.3 4.4 42 433-482 2-43 (44)
276 PF12862 Apc5: Anaphase-promot 96.7 0.033 7.1E-07 45.1 11.4 83 360-442 8-91 (94)
277 PF12862 Apc5: Anaphase-promot 96.7 0.034 7.3E-07 45.1 11.5 81 401-483 7-90 (94)
278 PF07079 DUF1347: Protein of u 96.7 0.88 1.9E-05 46.8 37.2 144 267-424 8-160 (549)
279 PF00515 TPR_1: Tetratricopept 96.7 0.0042 9.2E-08 39.3 4.8 33 669-702 1-33 (34)
280 PF07719 TPR_2: Tetratricopept 96.7 0.0044 9.6E-08 39.1 4.9 29 601-629 2-30 (34)
281 PF13176 TPR_7: Tetratricopept 96.6 0.0049 1.1E-07 39.6 4.8 31 602-632 1-31 (36)
282 PF05843 Suf: Suppressor of fo 96.6 0.042 9.1E-07 55.0 13.9 133 475-629 2-136 (280)
283 PF07719 TPR_2: Tetratricopept 96.6 0.0051 1.1E-07 38.8 4.8 33 669-702 1-33 (34)
284 PF13431 TPR_17: Tetratricopep 96.6 0.0018 3.9E-08 40.9 2.4 33 454-494 1-33 (34)
285 PF13176 TPR_7: Tetratricopept 96.5 0.0066 1.4E-07 39.0 4.9 31 560-590 1-31 (36)
286 PF13174 TPR_6: Tetratricopept 96.5 0.0066 1.4E-07 38.0 4.6 32 670-702 1-32 (33)
287 PF06552 TOM20_plant: Plant sp 96.4 0.033 7.2E-07 49.8 10.0 93 490-591 7-106 (186)
288 PF13431 TPR_17: Tetratricopep 96.4 0.0031 6.8E-08 39.8 2.5 34 330-371 1-34 (34)
289 KOG1538 Uncharacterized conser 96.3 1.3 2.8E-05 47.5 22.1 222 353-627 588-831 (1081)
290 PF11817 Foie-gras_1: Foie gra 96.3 1.3 2.7E-05 43.4 21.9 93 364-458 152-244 (247)
291 COG3118 Thioredoxin domain-con 96.3 0.32 7E-06 47.3 16.5 136 220-382 133-268 (304)
292 KOG4322 Anaphase-promoting com 96.3 1.6 3.5E-05 44.6 22.5 194 347-547 270-472 (482)
293 KOG1258 mRNA processing protei 96.2 2.3 5E-05 45.6 38.3 397 208-656 66-489 (577)
294 COG0790 FOG: TPR repeat, SEL1 96.1 0.67 1.5E-05 46.8 19.7 169 273-488 49-236 (292)
295 PF13181 TPR_8: Tetratricopept 96.1 0.012 2.6E-07 37.1 4.3 29 601-629 2-30 (34)
296 COG0790 FOG: TPR repeat, SEL1 96.0 1.1 2.3E-05 45.3 20.4 183 401-629 50-266 (292)
297 PF13181 TPR_8: Tetratricopept 96.0 0.018 4E-07 36.2 4.7 31 518-548 2-32 (34)
298 KOG2581 26S proteasome regulat 95.8 2.3 5E-05 43.2 20.1 144 232-383 137-280 (493)
299 PF04910 Tcf25: Transcriptiona 95.7 1 2.2E-05 46.7 18.9 162 470-647 36-232 (360)
300 KOG1258 mRNA processing protei 95.7 3.7 8.1E-05 44.1 37.3 376 262-702 76-473 (577)
301 COG3118 Thioredoxin domain-con 95.6 0.67 1.5E-05 45.1 15.5 167 477-679 137-303 (304)
302 PF11817 Foie-gras_1: Foie gra 95.4 2.9 6.2E-05 40.9 23.2 92 531-625 152-243 (247)
303 PF04910 Tcf25: Transcriptiona 95.3 0.83 1.8E-05 47.3 16.6 162 210-383 29-226 (360)
304 KOG0687 26S proteasome regulat 95.3 3.4 7.3E-05 40.8 19.8 134 324-464 80-213 (393)
305 KOG2581 26S proteasome regulat 95.3 4 8.6E-05 41.6 22.3 142 361-506 137-279 (493)
306 PF07079 DUF1347: Protein of u 95.1 4.8 0.0001 41.7 39.2 135 470-625 375-520 (549)
307 KOG4322 Anaphase-promoting com 95.0 4.9 0.00011 41.3 28.0 181 470-657 269-454 (482)
308 KOG1308 Hsp70-interacting prot 95.0 0.012 2.7E-07 57.5 1.9 92 439-547 121-212 (377)
309 PF13174 TPR_6: Tetratricopept 95.0 0.055 1.2E-06 33.6 4.3 28 602-629 2-29 (33)
310 KOG0376 Serine-threonine phosp 94.9 0.02 4.2E-07 59.0 3.1 97 437-550 9-105 (476)
311 PF12739 TRAPPC-Trs85: ER-Golg 94.8 3.3 7.1E-05 44.1 19.6 178 394-590 210-402 (414)
312 KOG4814 Uncharacterized conser 94.7 7.8 0.00017 41.9 36.2 106 221-339 354-459 (872)
313 KOG0376 Serine-threonine phosp 94.6 0.049 1.1E-06 56.2 5.0 115 520-657 7-121 (476)
314 PF12739 TRAPPC-Trs85: ER-Golg 94.5 3 6.5E-05 44.3 18.6 181 518-702 209-402 (414)
315 KOG1308 Hsp70-interacting prot 94.5 0.03 6.5E-07 55.0 3.2 91 399-503 121-211 (377)
316 PF04190 DUF410: Protein of un 94.2 6.2 0.00013 38.9 25.7 218 404-655 2-241 (260)
317 PF10516 SHNi-TPR: SHNi-TPR; 94.2 0.14 3.1E-06 33.0 4.8 36 601-636 2-37 (38)
318 COG5187 RPN7 26S proteasome re 94.2 3.7 8.1E-05 39.7 16.0 134 408-549 91-224 (412)
319 PF08424 NRDE-2: NRDE-2, neces 94.2 5.7 0.00012 40.6 19.1 147 470-629 15-183 (321)
320 COG5187 RPN7 26S proteasome re 94.0 6.3 0.00014 38.2 19.2 135 365-506 90-224 (412)
321 PF00244 14-3-3: 14-3-3 protei 94.0 6.1 0.00013 38.2 17.8 62 574-635 142-204 (236)
322 PF08424 NRDE-2: NRDE-2, neces 93.9 6.8 0.00015 40.1 19.1 148 426-587 13-183 (321)
323 PF10579 Rapsyn_N: Rapsyn N-te 93.8 1.1 2.5E-05 34.0 9.5 68 396-466 10-77 (80)
324 PF04781 DUF627: Protein of un 93.6 0.93 2E-05 37.2 9.6 102 398-503 2-107 (111)
325 PF10579 Rapsyn_N: Rapsyn N-te 93.6 0.82 1.8E-05 34.8 8.5 71 311-386 9-79 (80)
326 COG4649 Uncharacterized protei 93.5 4.4 9.6E-05 36.2 14.1 115 571-698 71-195 (221)
327 COG5107 RNA14 Pre-mRNA 3'-end 93.4 11 0.00024 39.1 22.0 235 262-548 299-533 (660)
328 KOG0686 COP9 signalosome, subu 93.4 1.7 3.7E-05 44.1 12.9 105 309-418 151-255 (466)
329 KOG0687 26S proteasome regulat 93.1 7.1 0.00015 38.6 16.2 127 415-549 87-213 (393)
330 PF08626 TRAPPC9-Trs120: Trans 93.1 6 0.00013 48.3 19.8 223 473-702 241-555 (1185)
331 COG4649 Uncharacterized protei 93.0 6.4 0.00014 35.2 16.0 150 439-628 46-195 (221)
332 KOG4507 Uncharacterized conser 93.0 0.22 4.7E-06 52.5 6.3 97 223-337 609-705 (886)
333 PF00244 14-3-3: 14-3-3 protei 92.9 9.7 0.00021 36.8 20.7 180 311-506 4-201 (236)
334 PF04190 DUF410: Protein of un 92.7 11 0.00024 37.1 23.2 145 481-632 17-173 (260)
335 PF11207 DUF2989: Protein of u 92.6 5.2 0.00011 37.0 13.9 85 400-494 114-198 (203)
336 PF14853 Fis1_TPR_C: Fis1 C-te 92.5 0.3 6.6E-06 34.3 4.6 32 670-702 2-33 (53)
337 PRK13184 pknD serine/threonine 92.4 27 0.00059 41.0 33.7 96 228-340 482-584 (932)
338 PF14853 Fis1_TPR_C: Fis1 C-te 92.4 0.93 2E-05 31.9 6.9 43 601-651 2-44 (53)
339 PF04781 DUF627: Protein of un 92.3 1.3 2.9E-05 36.3 8.8 101 438-545 2-106 (111)
340 PF08626 TRAPPC9-Trs120: Trans 92.2 22 0.00047 43.7 22.9 231 392-633 242-556 (1185)
341 PF09613 HrpB1_HrpK: Bacterial 92.2 2 4.3E-05 38.1 10.4 89 428-533 6-94 (160)
342 smart00028 TPR Tetratricopepti 92.1 0.24 5.2E-06 29.9 3.6 32 670-702 2-33 (34)
343 PRK14707 hypothetical protein; 91.9 42 0.00092 42.1 26.9 379 270-654 836-1221(2710)
344 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.51 1.1E-05 30.5 4.7 35 559-593 2-36 (38)
345 PRK14707 hypothetical protein; 91.8 44 0.00096 42.0 23.9 300 312-616 835-1141(2710)
346 PF09613 HrpB1_HrpK: Bacterial 91.6 4.8 0.0001 35.8 12.1 86 556-657 8-93 (160)
347 KOG4014 Uncharacterized conser 91.3 6.3 0.00014 35.5 12.4 148 372-550 50-237 (248)
348 smart00028 TPR Tetratricopepti 91.1 0.4 8.7E-06 28.8 3.8 29 601-629 2-30 (34)
349 PF04053 Coatomer_WDAD: Coatom 90.9 4.9 0.00011 42.9 13.8 160 274-501 270-429 (443)
350 KOG4014 Uncharacterized conser 90.8 4.6 9.9E-05 36.4 11.0 151 414-594 50-240 (248)
351 KOG0686 COP9 signalosome, subu 90.7 4.6 9.9E-05 41.2 12.3 116 423-544 141-256 (466)
352 PF10255 Paf67: RNA polymerase 89.8 4.8 0.0001 41.9 12.1 73 267-340 124-196 (404)
353 PF11207 DUF2989: Protein of u 89.5 2.1 4.5E-05 39.5 8.3 82 232-329 118-199 (203)
354 KOG2422 Uncharacterized conser 89.3 31 0.00066 37.2 17.4 175 278-461 251-448 (665)
355 KOG1497 COP9 signalosome, subu 88.9 26 0.00056 34.7 19.5 107 515-627 101-211 (399)
356 KOG2908 26S proteasome regulat 88.5 29 0.00063 34.8 15.7 95 526-622 84-179 (380)
357 PF14561 TPR_20: Tetratricopep 88.5 4.5 9.7E-05 32.3 8.7 68 599-680 21-90 (90)
358 PF15015 NYD-SP12_N: Spermatog 88.3 15 0.00031 37.9 13.8 108 439-555 183-300 (569)
359 PF10952 DUF2753: Protein of u 88.2 10 0.00022 31.7 10.4 74 435-508 4-84 (140)
360 PF05053 Menin: Menin; InterP 88.0 13 0.00028 39.9 13.7 79 426-507 271-351 (618)
361 PF07721 TPR_4: Tetratricopept 87.9 0.75 1.6E-05 26.7 2.9 25 266-290 2-26 (26)
362 KOG3364 Membrane protein invol 87.9 6.6 0.00014 33.5 9.4 84 559-656 33-119 (149)
363 PF04053 Coatomer_WDAD: Coatom 87.8 9 0.00019 40.9 13.0 25 352-376 349-373 (443)
364 PF15015 NYD-SP12_N: Spermatog 87.8 10 0.00022 38.9 12.4 66 433-506 229-294 (569)
365 KOG2422 Uncharacterized conser 87.7 45 0.00097 36.0 18.2 174 406-589 252-450 (665)
366 PF08311 Mad3_BUB1_I: Mad3/BUB 87.7 11 0.00023 32.4 11.1 87 488-585 40-126 (126)
367 PF07721 TPR_4: Tetratricopept 87.3 0.79 1.7E-05 26.7 2.8 25 601-625 2-26 (26)
368 KOG4814 Uncharacterized conser 87.1 51 0.0011 36.1 37.3 106 266-382 355-460 (872)
369 COG5107 RNA14 Pre-mRNA 3'-end 87.1 42 0.00091 35.1 24.3 75 210-294 31-105 (660)
370 KOG4521 Nuclear pore complex, 87.0 47 0.001 39.0 18.1 185 474-702 920-1135(1480)
371 KOG2561 Adaptor protein NUB1, 86.9 8.7 0.00019 39.5 11.4 147 477-625 166-340 (568)
372 PF09670 Cas_Cas02710: CRISPR- 86.4 40 0.00087 35.3 16.8 66 351-420 132-197 (379)
373 KOG1497 COP9 signalosome, subu 86.2 38 0.00081 33.7 18.8 111 348-459 101-211 (399)
374 PRK10941 hypothetical protein; 86.2 7.5 0.00016 38.3 10.6 70 429-506 178-247 (269)
375 PF09670 Cas_Cas02710: CRISPR- 86.2 42 0.00091 35.2 16.8 65 268-337 134-198 (379)
376 TIGR02561 HrpB1_HrpK type III 85.9 7.4 0.00016 34.0 8.9 86 431-533 9-94 (153)
377 KOG3364 Membrane protein invol 85.8 2.7 5.9E-05 35.8 6.1 61 641-702 31-103 (149)
378 COG3629 DnrI DNA-binding trans 85.8 12 0.00027 36.8 11.7 71 307-385 152-222 (280)
379 KOG2114 Vacuolar assembly/sort 85.8 69 0.0015 36.3 27.9 50 244-295 349-398 (933)
380 PRK13184 pknD serine/threonine 85.7 83 0.0018 37.1 30.7 107 271-385 481-587 (932)
381 KOG3824 Huntingtin interacting 85.3 1.8 4E-05 42.1 5.6 59 437-503 121-179 (472)
382 PF14561 TPR_20: Tetratricopep 85.3 8.4 0.00018 30.7 8.6 75 452-541 8-82 (90)
383 KOG1920 IkappaB kinase complex 85.2 89 0.0019 37.0 22.5 64 480-545 958-1027(1265)
384 KOG3824 Huntingtin interacting 85.0 2 4.4E-05 41.8 5.7 72 564-651 122-193 (472)
385 COG3947 Response regulator con 84.9 18 0.00039 35.4 11.9 76 560-643 281-356 (361)
386 PRK10941 hypothetical protein; 84.7 6.7 0.00015 38.6 9.4 66 264-338 180-245 (269)
387 KOG3807 Predicted membrane pro 84.4 46 0.001 33.2 14.9 58 226-295 189-246 (556)
388 KOG2114 Vacuolar assembly/sort 84.1 82 0.0018 35.8 26.0 56 196-252 343-398 (933)
389 TIGR02561 HrpB1_HrpK type III 83.9 14 0.0003 32.4 9.7 88 348-449 8-95 (153)
390 smart00101 14_3_3 14-3-3 homol 83.8 44 0.00095 32.4 22.2 182 353-547 4-201 (244)
391 PF04097 Nic96: Nup93/Nic96; 83.6 84 0.0018 35.5 21.3 19 315-333 265-283 (613)
392 KOG2908 26S proteasome regulat 83.5 52 0.0011 33.1 18.4 98 401-499 84-182 (380)
393 COG3629 DnrI DNA-binding trans 83.1 23 0.00049 35.0 12.2 69 430-506 151-219 (280)
394 cd02682 MIT_AAA_Arch MIT: doma 82.7 11 0.00024 28.7 7.6 44 220-264 5-48 (75)
395 TIGR03504 FimV_Cterm FimV C-te 81.7 1.9 4.1E-05 28.9 3.0 27 672-699 2-28 (44)
396 KOG3807 Predicted membrane pro 81.5 60 0.0013 32.4 17.5 55 440-504 192-246 (556)
397 PF10952 DUF2753: Protein of u 81.4 31 0.00067 29.0 11.2 75 561-635 4-85 (140)
398 KOG2561 Adaptor protein NUB1, 81.3 65 0.0014 33.5 14.7 115 223-340 165-299 (568)
399 KOG4422 Uncharacterized conser 80.7 76 0.0017 33.0 30.8 143 208-377 197-340 (625)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 80.6 36 0.00077 29.2 11.7 86 446-544 40-126 (126)
401 KOG0276 Vesicle coat complex C 80.1 16 0.00034 39.5 10.3 106 520-656 617-722 (794)
402 PF10255 Paf67: RNA polymerase 79.6 3.8 8.3E-05 42.6 5.9 73 310-382 124-196 (404)
403 PHA02537 M terminase endonucle 79.6 14 0.00031 35.2 9.2 102 526-629 92-207 (230)
404 COG3014 Uncharacterized protei 77.5 84 0.0018 31.7 16.6 165 495-702 42-245 (449)
405 KOG0276 Vesicle coat complex C 77.3 19 0.00042 38.8 10.0 52 273-338 645-696 (794)
406 PF04097 Nic96: Nup93/Nic96; 76.9 1.4E+02 0.003 33.8 21.7 19 272-290 265-283 (613)
407 COG4976 Predicted methyltransf 76.1 4.1 8.8E-05 38.2 4.3 57 440-504 3-59 (287)
408 KOG4563 Cell cycle-regulated h 75.9 10 0.00022 38.2 7.2 66 307-372 40-105 (400)
409 cd02683 MIT_1 MIT: domain cont 75.4 23 0.0005 27.2 7.7 49 220-269 5-53 (77)
410 PF04212 MIT: MIT (microtubule 74.7 23 0.00049 26.5 7.5 47 603-649 8-55 (69)
411 COG4976 Predicted methyltransf 74.7 3.7 7.9E-05 38.5 3.7 60 317-384 4-63 (287)
412 PF04212 MIT: MIT (microtubule 74.3 20 0.00043 26.8 7.1 47 221-268 5-51 (69)
413 KOG1310 WD40 repeat protein [G 74.2 14 0.00031 39.1 8.1 87 445-548 387-476 (758)
414 KOG4521 Nuclear pore complex, 74.1 2E+02 0.0043 34.3 17.9 185 433-630 921-1133(1480)
415 KOG1310 WD40 repeat protein [G 73.9 15 0.00032 39.0 8.0 102 217-337 370-474 (758)
416 TIGR03504 FimV_Cterm FimV C-te 73.5 6.3 0.00014 26.4 3.7 25 521-545 3-27 (44)
417 COG3947 Response regulator con 73.3 28 0.0006 34.2 9.2 66 433-506 280-345 (361)
418 KOG0128 RNA-binding protein SA 73.0 1.8E+02 0.0038 33.3 32.5 160 209-380 101-261 (881)
419 PF05053 Menin: Menin; InterP 72.7 1.1E+02 0.0023 33.3 14.0 71 559-632 278-350 (618)
420 PRK15180 Vi polysaccharide bio 72.7 32 0.0007 36.0 10.0 119 321-461 302-420 (831)
421 cd02682 MIT_AAA_Arch MIT: doma 71.9 25 0.00054 26.8 6.9 35 474-508 6-40 (75)
422 cd02681 MIT_calpain7_1 MIT: do 71.7 39 0.00083 25.9 8.0 31 602-632 8-38 (76)
423 cd02678 MIT_VPS4 MIT: domain c 71.5 32 0.0007 26.2 7.8 48 221-269 6-53 (75)
424 smart00745 MIT Microtubule Int 71.4 37 0.00081 25.9 8.3 46 221-267 8-53 (77)
425 PF12854 PPR_1: PPR repeat 71.1 8.7 0.00019 24.0 3.7 26 474-499 7-32 (34)
426 PF12854 PPR_1: PPR repeat 70.0 10 0.00022 23.7 3.9 26 600-625 7-32 (34)
427 KOG4563 Cell cycle-regulated h 70.0 13 0.00027 37.5 6.4 64 433-496 42-105 (400)
428 KOG0128 RNA-binding protein SA 69.9 2.1E+02 0.0045 32.8 33.6 151 347-503 110-260 (881)
429 cd02683 MIT_1 MIT: domain cont 69.2 42 0.0009 25.8 7.8 32 603-634 9-40 (77)
430 cd02656 MIT MIT: domain contai 68.2 46 0.001 25.3 8.1 48 221-269 6-53 (75)
431 KOG2034 Vacuolar sorting prote 68.2 2.2E+02 0.0047 32.9 15.8 57 481-549 365-421 (911)
432 cd02684 MIT_2 MIT: domain cont 67.6 48 0.001 25.3 7.9 49 221-270 6-54 (75)
433 KOG2758 Translation initiation 67.0 1.4E+02 0.0031 29.8 15.9 187 209-422 117-318 (432)
434 KOG2034 Vacuolar sorting prote 66.0 2.5E+02 0.0055 32.3 16.8 58 397-463 363-420 (911)
435 PF10373 EST1_DNA_bind: Est1 D 65.9 69 0.0015 31.7 11.2 62 369-444 1-62 (278)
436 PF10373 EST1_DNA_bind: Est1 D 65.5 13 0.00029 36.9 6.0 62 451-529 1-62 (278)
437 COG3914 Spy Predicted O-linked 64.3 1.4E+02 0.003 32.6 12.9 125 510-654 61-188 (620)
438 KOG0508 Ankyrin repeat protein 63.9 22 0.00047 37.2 6.8 136 263-403 243-390 (615)
439 PF07163 Pex26: Pex26 protein; 63.8 1.6E+02 0.0034 29.1 13.7 140 310-456 37-182 (309)
440 PF07720 TPR_3: Tetratricopept 63.7 30 0.00065 22.0 5.1 29 601-629 2-32 (36)
441 PF07720 TPR_3: Tetratricopept 63.6 26 0.00056 22.3 4.8 31 670-701 2-34 (36)
442 COG3014 Uncharacterized protei 63.2 1.8E+02 0.0038 29.5 17.5 29 601-629 214-242 (449)
443 cd02678 MIT_VPS4 MIT: domain c 63.0 64 0.0014 24.6 7.9 42 606-647 12-54 (75)
444 PHA02537 M terminase endonucle 62.6 52 0.0011 31.5 8.7 109 275-385 93-213 (230)
445 KOG0889 Histone acetyltransfer 62.5 5.5E+02 0.012 35.0 35.4 117 472-610 2734-2856(3550)
446 smart00745 MIT Microtubule Int 61.8 69 0.0015 24.4 8.0 30 606-635 14-43 (77)
447 PF13041 PPR_2: PPR repeat fam 61.5 25 0.00055 24.0 5.0 29 433-461 4-32 (50)
448 TIGR02710 CRISPR-associated pr 59.1 2.1E+02 0.0046 29.8 13.0 60 521-582 134-195 (380)
449 PF01535 PPR: PPR repeat; Int 59.1 15 0.00033 21.7 3.2 27 602-628 2-28 (31)
450 COG3914 Spy Predicted O-linked 58.9 2.8E+02 0.006 30.5 14.4 113 426-550 62-175 (620)
451 PF01535 PPR: PPR repeat; Int 58.8 14 0.00031 21.8 3.0 28 671-699 2-29 (31)
452 PRK09169 hypothetical protein; 58.6 5.4E+02 0.012 33.6 23.2 24 616-639 763-786 (2316)
453 KOG4279 Serine/threonine prote 58.5 70 0.0015 35.7 9.7 180 431-629 200-395 (1226)
454 smart00777 Mad3_BUB1_I Mad3/BU 58.3 66 0.0014 27.5 7.8 80 493-583 45-124 (125)
455 COG2178 Predicted RNA-binding 58.1 1.6E+02 0.0034 27.3 10.5 131 366-505 12-152 (204)
456 smart00101 14_3_3 14-3-3 homol 58.0 1.9E+02 0.0041 28.1 23.7 183 436-632 5-203 (244)
457 cd02677 MIT_SNX15 MIT: domain 57.2 85 0.0018 24.0 8.7 49 220-269 5-53 (75)
458 PF13041 PPR_2: PPR repeat fam 57.2 45 0.00097 22.7 5.7 29 601-629 4-32 (50)
459 KOG2582 COP9 signalosome, subu 57.0 2.3E+02 0.0051 29.0 12.8 107 308-419 102-210 (422)
460 KOG0508 Ankyrin repeat protein 56.8 22 0.00048 37.1 5.5 139 516-655 244-392 (615)
461 KOG2063 Vacuolar assembly/sort 55.3 2.5E+02 0.0054 32.8 13.9 183 435-628 507-712 (877)
462 TIGR00756 PPR pentatricopeptid 55.3 25 0.00054 21.2 3.9 27 602-628 2-28 (35)
463 cd02656 MIT MIT: domain contai 54.9 92 0.002 23.6 8.0 30 606-635 12-41 (75)
464 KOG0530 Protein farnesyltransf 54.8 2.2E+02 0.0047 27.9 18.4 120 363-504 56-177 (318)
465 TIGR00756 PPR pentatricopeptid 54.1 27 0.00059 21.1 3.9 28 476-503 2-29 (35)
466 cd02684 MIT_2 MIT: domain cont 52.7 1E+02 0.0022 23.5 7.9 41 608-648 14-55 (75)
467 PF07163 Pex26: Pex26 protein; 50.8 2.6E+02 0.0056 27.6 13.5 140 434-582 37-182 (309)
468 cd02681 MIT_calpain7_1 MIT: do 50.2 1.1E+02 0.0025 23.4 8.3 30 435-464 9-38 (76)
469 PF10938 YfdX: YfdX protein; 49.7 1.7E+02 0.0037 26.2 9.4 112 223-336 4-145 (155)
470 PF13812 PPR_3: Pentatricopept 49.0 43 0.00094 20.2 4.2 27 602-628 3-29 (34)
471 PF12309 KBP_C: KIF-1 binding 48.6 3.4E+02 0.0074 28.4 16.8 60 491-550 266-342 (371)
472 KOG0546 HSP90 co-chaperone CPR 48.6 31 0.00067 34.8 4.9 99 397-503 227-338 (372)
473 KOG1938 Protein with predicted 48.3 1.2E+02 0.0026 35.1 9.9 98 529-629 287-384 (960)
474 cd02679 MIT_spastin MIT: domai 48.0 57 0.0012 25.2 5.3 33 604-636 12-44 (79)
475 PF10938 YfdX: YfdX protein; 47.2 29 0.00063 31.0 4.2 109 520-628 5-145 (155)
476 PF13812 PPR_3: Pentatricopept 47.0 48 0.001 20.0 4.2 29 475-503 2-30 (34)
477 PF04348 LppC: LppC putative l 46.7 6.5 0.00014 43.3 0.0 175 515-702 22-197 (536)
478 smart00386 HAT HAT (Half-A-TPR 46.0 50 0.0011 19.4 4.1 30 614-651 1-30 (33)
479 cd02679 MIT_spastin MIT: domai 45.8 1.1E+02 0.0025 23.6 6.6 32 520-551 11-42 (79)
480 COG2912 Uncharacterized conser 45.0 1.7E+02 0.0037 28.7 9.2 70 429-506 178-247 (269)
481 PRK15180 Vi polysaccharide bio 44.8 4.2E+02 0.009 28.3 22.4 125 231-382 299-423 (831)
482 COG1747 Uncharacterized N-term 44.8 4.4E+02 0.0095 28.5 22.3 180 438-654 72-251 (711)
483 PF14863 Alkyl_sulf_dimr: Alky 44.3 1.5E+02 0.0032 26.0 8.0 49 601-657 71-119 (141)
484 KOG1920 IkappaB kinase complex 44.3 6.5E+02 0.014 30.4 28.4 25 604-628 1003-1027(1265)
485 cd02680 MIT_calpain7_2 MIT: do 43.6 1.4E+02 0.003 22.9 6.7 34 220-254 5-38 (75)
486 TIGR02710 CRISPR-associated pr 42.5 4.2E+02 0.0091 27.7 14.6 58 271-332 136-195 (380)
487 KOG2063 Vacuolar assembly/sort 42.3 3.1E+02 0.0068 32.1 12.1 108 476-589 506-622 (877)
488 COG5091 SGT1 Suppressor of G2 42.2 52 0.0011 31.7 5.1 59 406-464 53-111 (368)
489 TIGR03362 VI_chp_7 type VI sec 41.7 3.8E+02 0.0083 27.0 17.1 147 432-592 100-284 (301)
490 PF03635 Vps35: Vacuolar prote 39.7 6.7E+02 0.015 29.2 15.8 201 347-550 531-761 (762)
491 PRK12798 chemotaxis protein; R 39.5 4.8E+02 0.01 27.5 22.3 214 216-457 107-320 (421)
492 KOG2582 COP9 signalosome, subu 39.2 1.1E+02 0.0023 31.3 6.9 111 221-337 102-212 (422)
493 cd02680 MIT_calpain7_2 MIT: do 38.1 1.8E+02 0.0039 22.2 7.0 21 612-632 18-38 (75)
494 PF10858 DUF2659: Protein of u 38.1 3E+02 0.0065 24.7 14.9 130 488-629 71-200 (220)
495 PF07218 RAP1: Rhoptry-associa 38.1 97 0.0021 33.2 6.8 10 5-14 19-28 (782)
496 KOG0546 HSP90 co-chaperone CPR 37.8 46 0.00099 33.7 4.2 101 355-461 227-338 (372)
497 COG3899 Predicted ATPase [Gene 37.2 7.7E+02 0.017 29.2 36.4 262 220-503 438-706 (849)
498 COG2912 Uncharacterized conser 37.1 1.4E+02 0.003 29.3 7.3 67 263-338 179-245 (269)
499 cd02677 MIT_SNX15 MIT: domain 36.5 1.9E+02 0.0042 22.1 7.8 32 610-641 16-48 (75)
500 KOG4279 Serine/threonine prote 35.1 1.2E+02 0.0025 34.1 7.0 127 346-489 197-335 (1226)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-43 Score=350.95 Aligned_cols=429 Identities=19% Similarity=0.261 Sum_probs=285.5
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
..+..+...|+|.+|.+........+|.....++.++..++...+ +++....-..+++.. |..+++|.++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r-~d~s~a~~~~a~r~~---------~q~ae~ysn~ 122 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSR-LDKSSAGSLLAIRKN---------PQGAEAYSNL 122 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccc-hhhhhhhhhhhhhcc---------chHHHHHHHH
Confidence 344455556666666655556666666666666666666666654 666666655555443 4456667777
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
|.++...|++++|+.+|+.++++. ++ .+.+|.++|.++...|+.+.|..+|..++++ +|....
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~-----p~----fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~c 185 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELK-----PK----FIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYC 185 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcC-----ch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------Ccchhh
Confidence 777777777777777777776664 22 2345667777777777777777777777766 566666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (712)
+...+|.++...|+..+|..+|.+|++..+.. +.+|.+||.++..+|+.-.|+.+|++|+ ..+|..
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAv------kldP~f 251 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAV------KLDPNF 251 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhh------cCCCcc
Confidence 66677777777777777777777776655422 3356677777777777777777777666 456666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
..+|.+||.+|-..+.|+.|+.+|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|++++++
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-------- 315 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-------- 315 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------
Confidence 667777777777777777777777777666 6666667777777777777777777777777666
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
.|....++++||..+...|+..+|..+|.+|+.+.+.. +.+.++||.+|..+|.+++|..+|.++++++
T Consensus 316 -~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v~--- 384 (966)
T KOG4626|consen 316 -QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEVF--- 384 (966)
T ss_pred -CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence 44456667777777777777777777777777665544 3566677777777777777777777776652
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCC
Q 005145 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTA 664 (712)
Q Consensus 592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~ 664 (712)
+.++.++.+||.+|.++|++++|+.+|++|+.+ .|..++++.|+|.+|..+|+ +......
T Consensus 385 -----p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 385 -----PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred -----hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 345566677777777777777777777777776 67777777777777777776 4444456
Q ss_pred ChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 665 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 665 ~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+|..+++..+||.+|...|+..+|+ ..|+++|++.|+
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD 488 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD 488 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence 6777777777777777777777777 777777777666
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-42 Score=342.77 Aligned_cols=418 Identities=19% Similarity=0.240 Sum_probs=377.7
Q ss_pred ccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHh
Q 005145 203 KLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282 (712)
Q Consensus 203 ~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~ 282 (712)
++..++....+....|..++++.++|.+|...|+ ++.|+.+|+.++++- |+.+++|.++|.++...|+.+
T Consensus 98 ~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCc
Confidence 3334445556777889999999999999999997 999999999999865 777999999999999999999
Q ss_pred HHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005145 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (712)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (712)
.|...|..++++. |. .+-+...+|.++...|+..+|..+|.+|++. .|.++.+|.+||.++..
T Consensus 168 ~a~~~~~~alqln-----P~----l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 168 LAVQCFFEALQLN-----PD----LYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNA 230 (966)
T ss_pred ccHHHHHHHHhcC-----cc----hhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhh
Confidence 9999999999986 22 2335788999999999999999999999998 78999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005145 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (712)
+|+...|+..|++|+.+.+... .+|.+||.+|...+.|++|+.+|.+|+ ...|..+.++.++|.+|
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl------~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRAL------NLRPNHAVAHGNLACIY 296 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHH------hcCCcchhhccceEEEE
Confidence 9999999999999999876654 389999999999999999999999998 56888899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005145 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (712)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (712)
+.+|..+-|+..|++++++ .|....++.+||..+-..|+..+|..+|.+++.+ .+..+.++++
T Consensus 297 yeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~N 359 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNN 359 (966)
T ss_pred eccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHH
Confidence 9999999999999999999 8999999999999999999999999999999999 4456888999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 005145 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (712)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (712)
||.+|..+|.+++|..+|.++++..+.. +.+..+||.+|..+|++++|+.+|++|+.+ .+.++.+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda 424 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADA 424 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHH
Confidence 9999999999999999999999998766 568899999999999999999999999997 4678999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005145 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL 675 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l 675 (712)
+.++|..|..+|+...|+.+|.+|+.+ +|..+++..|||.+|...|+ ++......|+.++++.++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 999999999999999999999999999 99999999999999999999 555668899999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 676 AELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 676 a~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+.++.-.-+|.+-- +.+.++.+...+
T Consensus 497 lh~lq~vcdw~D~d-~~~~kl~sivrd 522 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYD-KRMKKLVSIVRD 522 (966)
T ss_pred HHHHHHHhcccchH-HHHHHHHHHHHH
Confidence 99888777776655 555666555544
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.4e-30 Score=286.63 Aligned_cols=374 Identities=17% Similarity=0.179 Sum_probs=289.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
.+..+..+|..++..|+ |++|+.+|.+++.+. |+ ...+.++|.+|..+|++++|+..+++++++.
T Consensus 126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~---------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK---------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 45678899999999997 999999999999764 22 3468899999999999999999999999885
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHHhCCCC----------
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-----------------------KQVLGETD---------- 346 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~---------- 346 (712)
++.. .+++.+|.+|..+|++++|+..|..++.+. ...+....
T Consensus 191 -p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~ 265 (615)
T TIGR00990 191 -PDYS----KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG 265 (615)
T ss_pred -CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 4443 358999999999999999998776553220 00000000
Q ss_pred ----------------------hhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005145 347 ----------------------PRVGETCRYLAEAH---VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401 (712)
Q Consensus 347 ----------------------~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~ 401 (712)
+.....+..++..+ ...++|++|+.+|++++.... ..+..+.++..+|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 266 NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHH
Confidence 00111112222221 123678899999999887641 224456789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005145 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (712)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (712)
+..+|++++|+.+|++++. ..|....++..+|.++...|++++|+.+|++++++ .|....++..+|
T Consensus 341 ~~~~g~~~eA~~~~~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg 406 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRA 406 (615)
T ss_pred HHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 9999999999999999984 45677788999999999999999999999999998 677788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005145 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (712)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (712)
.++...|++++|+.+|++++.+ .|.....+..+|.++..+|++++|+..|++++...+.. ..++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~ 470 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVY 470 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHH
Confidence 9999999999999999999998 34456779999999999999999999999999876544 3678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 005145 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (712)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~ 641 (712)
..+|.++...|++++|+..|++++.+........ ......+...+.++...|++++|+.+|++++.+ +|+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~ 541 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPEC 541 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCc
Confidence 8999999999999999999999998754322111 111122233334444579999999999999988 6776
Q ss_pred HHHHHHHHHHHHHccc
Q 005145 642 LGVYSNLAGTYDAIGR 657 (712)
Q Consensus 642 ~~~~~~La~~~~~~g~ 657 (712)
..++..+|.+|..+|+
T Consensus 542 ~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 542 DIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHHHHccC
Confidence 6677777777777776
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-30 Score=291.68 Aligned_cols=387 Identities=16% Similarity=0.132 Sum_probs=306.6
Q ss_pred cccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
+...+..+...|+|..|+..|..+....|+ ...+.++|.+|...|+ +++|+..+.+|+++. |....+++
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHH
Confidence 446677788889999999888888888886 6789999999999997 999999999999863 55678899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhh-------------------------hcccc-hH-HH---------------
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIE-------------------------EGQEH-AL-AK--------------- 307 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~-~~-~~--------------- 307 (712)
.+|.+|..+|++++|+..|..++.+.... ..+.. +. ..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 99999999999999998886654321100 00000 00 00
Q ss_pred ------------HHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 308 ------------FAGHMQLGDTY---AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 308 ------------~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (712)
...+..++..+ ...++|++|+.+|++++... ...|....++..+|.++...|++++|+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00011222211 12357888888888888762 22578888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005145 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (712)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (712)
|++++.+.+.. ..++..+|.++...|++++|+.+|++++.. .|....+++.+|.+++..|++++|+
T Consensus 354 ~~kal~l~P~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 354 LSKSIELDPRV--------TQSYIKRASMNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred HHHHHHcCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999886543 347889999999999999999999999853 4555788999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005145 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
.+|++++.+ .|....++..+|.++..+|++++|+.+|++++... |....++..+|.++...|+
T Consensus 420 ~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 420 KDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---------PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHccC
Confidence 999999998 78888899999999999999999999999999883 3456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005145 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~ 612 (712)
+++|+..|++++.+.+............+...+.++...|++++|+.++++++.+ + +....++..+|.++.+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l-----~---p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII-----D---PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----C---CCcHHHHHHHHHHHHH
Confidence 9999999999999876542222222223333334444579999999999999985 1 2234578899999999
Q ss_pred hCCHHHHHHHHHHHHHHHH
Q 005145 613 RYSINEAVELFEEARSILE 631 (712)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~ 631 (712)
+|++++|+.+|++++++.+
T Consensus 555 ~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 555 QGDVDEALKLFERAAELAR 573 (615)
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999843
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-28 Score=255.49 Aligned_cols=381 Identities=38% Similarity=0.497 Sum_probs=323.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005145 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (712)
.+.....++..++.....+..+.+.+....++++..++.... .....+......++..+.+++|....++...+..
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 456667778888888888777888888888888877665311 1112355567777778888888887776654321
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005145 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
...++..+...-+.+..+..+...+.+..+..+..+|....+..+++..|..+|+|+.|+..++.+
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112333344444444666777777777777788889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
+++..+..+ ..++.+......+|.+|..++++++|+.+|+
T Consensus 226 l~~l~k~~G----------------------------------------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSG----------------------------------------LKHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccC----------------------------------------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 988544432 1344555556689999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005145 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (712)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (712)
+|+.+.+...|+++|..+.++.+||.+|...|+|++|..++++|++|+.+. .+..++.....+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999999999999999999999999999999994 4778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005145 537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (712)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 615 (712)
..++++++++..+.++..+ .++.++.+||.+|+.+|+|.+|.++|++|+.+.++..+.....++..++.||..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9999999999998888877 899999999999999999999999999999999999888778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+.+|..+|.++..+. +..|++||++...+.+||.+|..+|+
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHccc
Confidence 999999999999999 99999999999999999999999998
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.8e-29 Score=299.10 Aligned_cols=420 Identities=17% Similarity=0.162 Sum_probs=282.7
Q ss_pred cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005145 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG 279 (712)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g 279 (712)
.|++.+|+..+.......|.....+..+|..+...|+ +++|+.+|++++... |....++..+|.++...|
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEG 513 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCC
Confidence 3444444444444444555555666666666666664 666666666665432 222445556666666666
Q ss_pred CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (712)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (712)
++++|+..|++++... +.+ ..++..++.++...|++++|+.++.+++.. +|.....+..++.+
T Consensus 514 ~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQY 576 (899)
T ss_pred CHHHHHHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHH
Confidence 6666666666666543 222 223556666666666666666666666555 34444556666666
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
+...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++.. .+....++..+|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~ 642 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLA 642 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHH
Confidence 777777777777776665543221 235667777777777777777777776632 233345666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (712)
.++...|++++|+.+|++++.. .|....++..++.++...|++++|+.+++.+.... +.....
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~ 705 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALG 705 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHH
Confidence 7777777777777777777765 55556667777777777777777777777665552 223456
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (712)
+..+|.++...|++++|+..|++++...+.. ..+..++.++...|++++|...+++++... +..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~ 769 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PND 769 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCC
Confidence 7778888888888888888888888764332 355677888888888888888888877641 122
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc------hhhhCCCChhHHHHHH
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR------EEKLGTANPDVDDEKR 673 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~------~~~l~~~~p~~~~~~~ 673 (712)
..++..+|.+|...|++++|+.+|+++++. +|+...++.+++.++...|+ .+......|+.+..+.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHH
Confidence 467888888888888888888888888887 77778888888888888877 3333345667777788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 674 RLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 674 ~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.+|.++...|++++|. ..|+++++.+|.
T Consensus 842 ~~~~~~~~~g~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 842 TLGWLLVEKGEADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 8888888888888888 888888888775
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.2e-29 Score=295.23 Aligned_cols=424 Identities=18% Similarity=0.205 Sum_probs=364.2
Q ss_pred ccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005145 191 NAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (712)
Q Consensus 191 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~ 270 (712)
...+..+...|++.+|++.+..+...+|.....+..++..+...|+ +++|+..|++++... |....++..
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~ 538 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTID---------PKNLRAILA 538 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------cCcHHHHHH
Confidence 3445567778888888888888888899999999999999999997 999999999998753 334667888
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
++.++...|++++|+.++++++... +... ..+..++.+|...|++++|+..+++++.. .|...
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 601 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSP 601 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCH
Confidence 9999999999999999999998765 3332 34788999999999999999999998876 45666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
.++..+|.++...|++++|+.+|++++...+.. ...+..+|.++...|++++|+.+|++++. ..|.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~ 667 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS--------ALALLLLADAYAVMKNYAKAITSLKRALE------LKPD 667 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCC
Confidence 789999999999999999999999999875432 23688999999999999999999999874 3455
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..++.++...|++++|+.+++.+... .+.....+..+|.++...|++++|+..|++++.....
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---- 735 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS---- 735 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----
Confidence 5678899999999999999999999988776 5666778899999999999999999999999987322
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
. ..+..++.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|+++++..
T Consensus 736 --~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 800 (899)
T TIGR02917 736 --S----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-- 800 (899)
T ss_pred --c----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--
Confidence 1 457789999999999999999999998865432 4678899999999999999999999999852
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCC
Q 005145 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGT 663 (712)
Q Consensus 591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~ 663 (712)
+....++..+|.++...|+ .+|+.++++++.+ .|+...++..+|.+|...|+ .+....
T Consensus 801 ------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 801 ------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred ------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2234788999999999999 8899999999998 67777888999999999999 455556
Q ss_pred CChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005145 664 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 664 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
..|.+..++..++.++.+.|++++|. +.|+++++
T Consensus 866 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 899 (899)
T TIGR02917 866 IAPEAAAIRYHLALALLATGRKAEAR-KELDKLLN 899 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Confidence 77888899999999999999999999 99998873
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.9e-28 Score=291.52 Aligned_cols=449 Identities=14% Similarity=0.056 Sum_probs=340.4
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~ 270 (712)
..+..+...|++++|++.+..+...+|.....-. .........|+ +++|+..++++++.. |....++..
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~ 186 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNT 186 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHH
Confidence 3445677889999999888887777776654322 22222333466 999999999998764 444667888
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhh-----------hc------------------ccchHH-HH-H----------
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIE-----------EG------------------QEHALA-KF-A---------- 309 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~------------------~~~~~~-~~-~---------- 309 (712)
+|.++...|++++|+..+++++...... .. +..... .. .
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999986532100 00 000000 00 0
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 310 ----GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 310 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
....+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+.+|++++++.+....
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 0124488899999999999999999998 6777899999999999999999999999999988765432
Q ss_pred CCCH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 386 PASL------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (712)
Q Consensus 386 ~~~~------~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (712)
.... ........+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1100 01123345688999999999999999999853 45556788899999999999999999999999
Q ss_pred HHHHHhcCCCCHHHH------------------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 005145 460 TAFKTNKGENHPAVA------------------------------------------SVFVRLADMYNRTGKLRESKSYC 497 (712)
Q Consensus 460 ~~~~~~~~~~~~~~~------------------------------------------~~~~~la~~~~~~g~~~~A~~~~ 497 (712)
++ .|... ..+..+|.++...|++++|+.+|
T Consensus 413 ~~--------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 413 RM--------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred Hh--------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 22211 12334667777889999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 005145 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (712)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (712)
++++++ .|....+++.+|.+|...|++++|+..+++++...+.. ...++.++.++...+++++|
T Consensus 485 ~~Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 485 RQRLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHH
Confidence 999998 34456778999999999999999999999998765433 23455566666666777776
Q ss_pred HHHHHHHH-------------------------------------HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 005145 578 YDSFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV 620 (712)
Q Consensus 578 ~~~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 620 (712)
+..++++. .+++. . +....++..+|.++...|++++|+
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~----p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-Q----PPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-C----CCCchHHHHHHHHHHHcCCHHHHH
Confidence 66655421 11111 1 112256788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 005145 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 693 (712)
Q Consensus 621 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l 693 (712)
.+|++++.+ +|+...++..++.+|...|+ .+.+....|+...++..+|.++...|++++|. +.|
T Consensus 624 ~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~ 694 (1157)
T PRK11447 624 AAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ-RTF 694 (1157)
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH-HHH
Confidence 999999998 89999999999999999999 45555678888889999999999999999999 999
Q ss_pred HHHHHhccc
Q 005145 694 ETLLDANSR 702 (712)
Q Consensus 694 ~~~l~~~p~ 702 (712)
+.++...|.
T Consensus 695 ~~al~~~~~ 703 (1157)
T PRK11447 695 NRLIPQAKS 703 (1157)
T ss_pred HHHhhhCcc
Confidence 999998765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.5e-27 Score=283.99 Aligned_cols=439 Identities=14% Similarity=0.112 Sum_probs=333.6
Q ss_pred ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcC----------
Q 005145 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGAN---------- 257 (712)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~---------- 257 (712)
..+++.+|+..+..+...+|....+.+.+|..++..|+ +++|+..+++++... +.+..
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 35778888888999999999999999999999999997 999999999875421 00000
Q ss_pred -------CCCCHHHHH-----------------HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH
Q 005145 258 -------GKPSLELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ 313 (712)
Q Consensus 258 -------~~~~~~~~~-----------------~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 313 (712)
.+..+.... ....+|.++...|++++|+..|++++++. ++++ .++..
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~ 308 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGA 308 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHH
Confidence 000010000 11234888999999999999999999886 4444 35899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 314 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+|.+|...|++++|+.+|+++++.... .+. .......+|.++...|++++|+.+|++++.+.+.
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999987321 111 1123345688899999999999999999998653
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------Chh--------------------
Q 005145 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAE-------------------- 430 (712)
Q Consensus 383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~-------------------- 430 (712)
. ..++..+|.++...|++++|+.+|++++........ .+.
T Consensus 384 ~--------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 384 D--------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred C--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 347888999999999999999999999854211100 000
Q ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 431 ----VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 431 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
....+..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..|++++...
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-- 525 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-- 525 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 0122345677888899999999999999998 77778899999999999999999999999998862
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------------------------HHHHh
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYND 549 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~ 549 (712)
|.....++.++.++...+++++|+..++++. .+...
T Consensus 526 -------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 526 -------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred -------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 2234456666666667777777766665421 11111
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
. +....++..+|.++...|++++|+.+|++++.. .+....++..++.+|...|++++|+.+|++++..
T Consensus 599 ~----p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 599 Q----PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred C----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 1 112246678999999999999999999999985 1223578999999999999999999999998876
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCC---h---hHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005145 630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTAN---P---DVDDEKRRLAELLKEAGRVRSRKAQSLETL 696 (712)
Q Consensus 630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~l~~~ 696 (712)
.|+...++..+|.++..+|+ .+.+.... | ..+..+..+|.++...|++++|+ ..|+.+
T Consensus 667 --------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~A 737 (1157)
T PRK11447 667 --------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDA 737 (1157)
T ss_pred --------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 78888889999999999999 23332222 2 23456778899999999999999 999999
Q ss_pred HH
Q 005145 697 LD 698 (712)
Q Consensus 697 l~ 698 (712)
+.
T Consensus 738 l~ 739 (1157)
T PRK11447 738 MV 739 (1157)
T ss_pred Hh
Confidence 86
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-26 Score=244.37 Aligned_cols=440 Identities=16% Similarity=0.145 Sum_probs=345.6
Q ss_pred ccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHH
Q 005145 205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA 284 (712)
Q Consensus 205 ~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A 284 (712)
.+.+.+..+-..++.++.++..++..++..|+ |..+..++..|+... ...+..+..++++|.+|..+|+|++|
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 34456666777888999999999999999997 999999999988764 23366788899999999999999999
Q ss_pred HHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC
Q 005145 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (712)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (712)
..+|.+++... +++ .+-.++.+|++|...|+++.|+.+|++++.. .|....++..||.+|...+
T Consensus 327 ~~yY~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 327 FKYYMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhh
Confidence 99999999876 333 1224889999999999999999999999988 5888889999999998876
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005145 365 ----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (712)
Q Consensus 365 ----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (712)
..+.|..++.+++...+. ...+|..++.++....-+.. +.+|..|+.++...... --..+++++|.
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~--------d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvas 460 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPV--------DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVAS 460 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHH
Confidence 567777777777766533 34588899988876655555 99999999887766554 55678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005145 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
.++..|++.+|..+|.+|+..+......+. .......+++|.++...++++.|.+.|...+.. +|.+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId 531 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYID 531 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHH
Confidence 999999999999999999998654332222 223557899999999999999999999999988 788899
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005145 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (712)
++..+|......++..+|..++..++.+....+ .++..+|.+|+...++..|.+-|...+...... .
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np-------~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~---~--- 598 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNP-------NARSLLGNLHLKKSEWKPAKKKFETILKKTSTK---T--- 598 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHhhhhhcccccHHHHHHhhhccC---C---
Confidence 999999888889999999999999999866553 577889999999999999999888776642221 1
Q ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh
Q 005145 599 FGVALNQMGLACVQR-----YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP 666 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p 666 (712)
.+.++..||.+|++. .+.+++..++.+|++++.+++.. +|.++.+-+.+|.++...|+ +..+.+.-.
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 235677788777643 23355555666666655554442 78888888888888888888 222323333
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005145 667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
+..++|.+||.+|..+|+|..|+ +.|+.++...-
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AI-qmYe~~lkkf~ 711 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAI-QMYENCLKKFY 711 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 45567888888888888888888 88888877543
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.96 E-value=6.3e-25 Score=228.32 Aligned_cols=329 Identities=20% Similarity=0.242 Sum_probs=287.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
|+..+...-+.+.....+...+.+..+..+...|. ...+...++..|..+|+|+.|+..++.++++..+..|..++.+.
T Consensus 163 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va 241 (508)
T KOG1840|consen 163 LADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA 241 (508)
T ss_pred HHhhccccccccccchhhHHHHHHHHHhcccCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH
Confidence 44444444444455555555555555555566665 45567779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCC
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA--NDQD 428 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~ 428 (712)
..+..+|.+|..++++.+|+.+|++|+.+.....+..++..+.++.+||.+|...|++++|..++++|+.+... ...+
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876 4567
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+..+..+.+++.++..++++++|..+++++++++....+++++..+..+.+||.+|..+|+|++|.++|++|+.+.+...
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
+..+......+..||..|.+.+++.+|...|.+++.+.... |.. +.+...+.+||.+|..+|+++.|+++.++++..
T Consensus 402 -~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~-g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 402 -GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC-GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred -cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44566778899999999999999999999999999999555 554 588889999999999999999999999999988
Q ss_pred HHHhCCCCChHHHHH
Q 005145 588 LRAIGERKSAFFGVA 602 (712)
Q Consensus 588 ~~~~~~~~~~~~~~~ 602 (712)
.+...+..++.....
T Consensus 480 ~~~~~~~~~~~~~~~ 494 (508)
T KOG1840|consen 480 REQRLGTASPTVEDE 494 (508)
T ss_pred HHHcCCCCCcchhHH
Confidence 887766555544433
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-25 Score=236.00 Aligned_cols=432 Identities=14% Similarity=0.168 Sum_probs=350.2
Q ss_pred cccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhH
Q 005145 204 LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283 (712)
Q Consensus 204 ~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~ 283 (712)
..|...|.-+...+|.+..+|+..|.+.+..++ |..|+.+|..++.+.+... ++ ....+|.|++.+|+.+.
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~---aD-----~rIgig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK---AD-----VRIGIGHCFWKLGMSEK 217 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC---CC-----ccchhhhHHHhccchhh
Confidence 445567777888999999999999999999997 9999999999998875432 22 23457999999999999
Q ss_pred HHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005145 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (712)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (712)
|+..|++++++. |. .+.++..||.+-....+ +..+...+.++... ++..+.++..|+..|
T Consensus 218 a~~a~~ralqLd-----p~----~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 218 ALLAFERALQLD-----PT----CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHF 280 (1018)
T ss_pred HHHHHHHHHhcC-----hh----hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHH
Confidence 999999999997 32 44457777776655544 55666666666655 566778899999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005145 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (712)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (712)
+..|+|..+..+...++.... .....+..++++|..|..+|+|++|..+|.+++.. ++......++.+|+
T Consensus 281 yfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQ 350 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhH
Confidence 999999999999999887652 23455778999999999999999999999999742 22224667889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005145 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
+|...|+++.|..+|++.+.. .|+...++..||.+|...+ ..+.|..++.++++. .+..
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d 413 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVD 413 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------cccc
Confidence 999999999999999999998 8888999999999999886 567777788887776 3456
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005145 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
..+|..++.+|....-+. ++.+|..|+.+....... .-..+++++|..++..|++.+|...|..|+..+....+.+.
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 889999999987765554 499999999888776333 33468999999999999999999999999998654322221
Q ss_pred --hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh
Q 005145 597 --AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD 667 (712)
Q Consensus 597 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~ 667 (712)
.......+++|.++...+++..|.+.|...+.. ||..+.++..|+......+. ...+...+..
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 223456899999999999999999999999998 99999999999855555555 4555567777
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005145 668 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 700 (712)
Q Consensus 668 ~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~ 700 (712)
++.++..+|.++.+..+|..|. +-|+.+++..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~-k~f~~i~~~~ 594 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAK-KKFETILKKT 594 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccc-cHHHHHHhhh
Confidence 8888999999999999999999 8888777643
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.9e-26 Score=221.33 Aligned_cols=400 Identities=18% Similarity=0.105 Sum_probs=311.5
Q ss_pred cccccccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005145 184 DKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE 263 (712)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 263 (712)
.+-...+..+++.+..+|+|++||..|..+....|+.+.++.+++.+|...|+ +++.++.+.+||++. |+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~---------P~ 181 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN---------PD 181 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC---------cH
Confidence 33444566888889999999999999999999999999999999999999998 999999999999875 78
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHH------------------HHhhchh-----hhhhc----ccchHHH-HHHHHH--
Q 005145 264 LVMCLHVIAAIYCSLGQYNEAIPVL------------------EQSIEIP-----VIEEG----QEHALAK-FAGHMQ-- 313 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~------------------~~al~~~-----~~~~~----~~~~~~~-~~~~~~-- 313 (712)
.+.+|+..+.++..+|++++|+.-. ++.|... ....+ +.-|... +.+|+.
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 8999999999999999999998533 2222211 00011 1111110 111111
Q ss_pred ------------------H--HHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHHhCC
Q 005145 314 ------------------L--GDTYAMLG---QLENSLMCYTTGLEVQKQVLGET-----DPRVGETCRYLAEAHVQALQ 365 (712)
Q Consensus 314 ------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~ 365 (712)
+ +.-+...+ .|..|...+.+...........+ -...+.++...|..++..|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 1 11111112 45666666666554443322211 12457888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005145 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (712)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (712)
+-.|...++.++.+.+.... .|..+|.+|....+.++....|.+|. ..+|..+.+|++.|++++.+
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~--------lyI~~a~~y~d~~~~~~~~~~F~~A~------~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS--------LYIKRAAAYADENQSEKMWKDFNKAE------DLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred chhhhhhHHHHHhcCcccch--------HHHHHHHHHhhhhccHHHHHHHHHHH------hcCCCCCchhHhHHHHHHHH
Confidence 99999999999999876643 38899999999999999999999997 45777788999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHH
Q 005145 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 525 (712)
++|++|+.-|++++.+ .|..+.++..++.+.+++++++++...|+++...+.. .+.++...|.
T Consensus 408 ~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~---------~~Evy~~fAe 470 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN---------CPEVYNLFAE 470 (606)
T ss_pred HHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999999999544 5778999999
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 005145 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN 604 (712)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 604 (712)
++..++++++|++.|.+|+.+.+...+.....+ .+...|.+ +.-.+++..|+.++.+|+++ .+..-.++.
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~-plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~ 541 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA-PLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYE 541 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccccccccccch-hhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHH
Confidence 999999999999999999999876322222211 22222222 22348999999999999986 344568999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005145 605 QMGLACVQRYSINEAVELFEEARSILEQE 633 (712)
Q Consensus 605 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (712)
.||.+..++|+.++|+++|+++..+.+..
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999986653
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.4e-24 Score=241.94 Aligned_cols=363 Identities=14% Similarity=0.030 Sum_probs=287.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
....-+...+..+...|+ +++|+.+++.++... |....+++.+|.+....|++++|+..|++++.+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~-~~~A~~l~~~~l~~~---------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--- 106 (656)
T PRK15174 40 GNEQNIILFAIACLRKDE-TDVGLTLLSDRVLTA---------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--- 106 (656)
T ss_pred ccccCHHHHHHHHHhcCC-cchhHHHhHHHHHhC---------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---
Confidence 334455667778888997 999999999988764 4457788889999999999999999999999886
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
|+++. ++..+|.++...|++++|+..|++++.+ .|....++..++.++...|++++|+..+++++.
T Consensus 107 --P~~~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 107 --VCQPE----DVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred --CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 55544 4889999999999999999999999988 677888899999999999999999999998776
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
..+... ..+..+ ..+...|++++|+..+++++... ..........++.++...|++++|+..|+++
T Consensus 173 ~~P~~~--------~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-----~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 173 EVPPRG--------DMIATC-LSFLNKSRLPEDHDLARALLPFF-----ALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred hCCCCH--------HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 654321 133333 34788999999999998876421 1122233456688889999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005145 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE----SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (712)
+.. .|....++..+|.++...|++++ |+.+|++++.+ .|....++..+|.++...|+++
T Consensus 239 l~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 239 LAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---------NSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHH
Confidence 987 67778899999999999999986 89999999988 3445788999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005145 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (712)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 614 (712)
+|+.++++++.+.+.. ..++..+|.++...|++++|+..|++++.. .+.....+..+|.++...|
T Consensus 302 eA~~~l~~al~l~P~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 302 KAIPLLQQSLATHPDL-------PYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCC
Confidence 9999999999875543 356778999999999999999999998874 1222345666788999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
++++|+..|++++++..... .+....+...+...+...+.
T Consensus 367 ~~deA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 367 KTSEAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred CHHHHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCC
Confidence 99999999999998833322 12233455666666665544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=3.8e-24 Score=238.57 Aligned_cols=332 Identities=13% Similarity=0.068 Sum_probs=278.8
Q ss_pred CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005145 194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273 (712)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~ 273 (712)
+.....+|.+.+|...+......+|....++..++......|+ +++|+..+++++.+. |....++..+|.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~-~~~A~~~l~~~l~~~---------P~~~~a~~~la~ 118 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ-PDAVLQVVNKLLAVN---------VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC-HHHHHHHHHHHHHhC---------CCChHHHHHHHH
Confidence 3446777888888888888889999999999999999999997 999999999999864 445678899999
Q ss_pred HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (712)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (712)
++...|++++|+..|++++.+. +.++. ++..+|.++...|++++|+..+++++.. .|....++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-----P~~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~~~a~ 181 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-----SGNSQ----IFALHLRTLVLMDKELQAISLARTQAQE--------VPPRGDMI 181 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHCCChHHHHHHHHHHHHh--------CCCCHHHH
Confidence 9999999999999999999886 44433 4889999999999999999999988776 34444455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (712)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (712)
..++ .+...|++++|+..+++++...+... ......++.++...|++++|+..|.+++. ..|....
T Consensus 182 ~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~------~~p~~~~ 247 (656)
T PRK15174 182 ATCL-SFLNKSRLPEDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALA------RGLDGAA 247 (656)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCHH
Confidence 5554 47889999999999999877643111 11345668889999999999999999984 3455678
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005145 434 VDCSIGDTYLSLSRYDE----AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
++..+|.++...|++++ |+..|++++.+ .|....++..+|.++...|++++|+.++++++.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------ 313 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT------ 313 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 88999999999999996 89999999998 7888899999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
.|....++..+|.++...|++++|+..|++++...+.. ...+..+|.++...|++++|+..|+++++...
T Consensus 314 ---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-------~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 314 ---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-------SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 34456778899999999999999999999998864432 23455678899999999999999999998743
Q ss_pred H
Q 005145 590 A 590 (712)
Q Consensus 590 ~ 590 (712)
.
T Consensus 384 ~ 384 (656)
T PRK15174 384 S 384 (656)
T ss_pred h
Confidence 3
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-23 Score=206.05 Aligned_cols=426 Identities=14% Similarity=0.112 Sum_probs=301.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+..+-..|+.++..|+ |++||.+|.+|+.+. |+-+..|.+++.||...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 566788899999999997 999999999999876 3336678999999999999999999999999997
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHhCCH------HHHHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQF------SEAQK 371 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~------~~A~~ 371 (712)
|+ ...++++.+..+..+|++++|+.-..- +-+.....+.. .|..-+.+...|..-...+-- --+..
T Consensus 180 --P~----Y~KAl~RRA~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 180 --PD----YVKALLRRASAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred --cH----HHHHHHHHHHHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 33 344699999999999999999865432 22211110000 011222222222211110000 00001
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHH
Q 005145 372 FCQMALDIHKDNGSP---ASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSI 438 (712)
Q Consensus 372 ~~~~al~~~~~~~~~---~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~l 438 (712)
.......++.....+ .....+.....-+.-+...+ .|..|...+.+.......... -...+.++...
T Consensus 253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred HHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 111111111110000 00000101111111112222 577777777666433322111 13457888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005145 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
|..++..|++-.|...|..++.+ ++.....|+.+|.+|....+.++-...|.+|..+ +|..+.
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~d 395 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPD 395 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCc
Confidence 99999999999999999999998 7777777999999999999999999999999999 455677
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005145 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (712)
+|+..|.+++-++++++|+.-|++++.+.++. +..+..++.+.++++++++++..|+.+...+ |.
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~ 460 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PN 460 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 89999999999999999999999999998766 4678899999999999999999999998864 34
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--------hhhhCCCChhHHH
Q 005145 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--------EEKLGTANPDVDD 670 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--------~~~l~~~~p~~~~ 670 (712)
...++...|.++..+++|++|++.|..|+++-....+- + -.+..+.+-|.+..+... ..+....+|....
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~-v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-I-VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-c-ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH
Confidence 55789999999999999999999999999983221100 0 033344444444333222 5556688999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005145 671 EKRRLAELLKEAGRVRSRKAQSLETLLDA 699 (712)
Q Consensus 671 ~~~~la~~~~~~g~~~~A~~~~l~~~l~~ 699 (712)
++..||.+..++|+.++|+ +.|++.+..
T Consensus 539 A~~tlaq~~lQ~~~i~eAi-elFEksa~l 566 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAI-ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHhhHHHHH-HHHHHHHHH
Confidence 9999999999999999999 999988754
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.3e-23 Score=239.25 Aligned_cols=425 Identities=12% Similarity=0.030 Sum_probs=322.2
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005145 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
...+|.....+.....+....|+ +++|+..|.++.... +..+.++..+|.++...|++++|+.+|+++++
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777788888987 999998888887521 33366788899999999999999999999998
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (712)
+. |.++. ++..++.++...|++++|+..+++++.. .|.... +..+|.++...|++++|+..+
T Consensus 78 ~~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 78 LE-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred hC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 86 55443 3779999999999999999999999988 567677 999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHHHH-----
Q 005145 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV-----ASVDCSIGDTYL----- 443 (712)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~la~~~~----- 443 (712)
++++++.+... .++..++.++...|..++|+..++++.. .|.. ......+..++.
T Consensus 140 ~~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 140 TQALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999876542 3567789999999999999998876542 1111 111222222222
Q ss_pred HcCCH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005145 444 SLSRY---DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (712)
Q Consensus 444 ~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (712)
..+++ ++|+..++.++....... ...+....+.......+...|++++|+..|+++++.. ...|..+.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~------~~~P~~a~-- 275 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG------QIIPPWAQ-- 275 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC------CCCCHHHH--
Confidence 22334 778888888876643221 1123344444442334467799999999999987762 12233333
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCC
Q 005145 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GER 594 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~ 594 (712)
..+|.+|...|++++|+.+|++++...+.. ..........++.++...|++++|+.+++++....... ...
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 336899999999999999999988643221 11112345667778899999999999999988752110 000
Q ss_pred C-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh
Q 005145 595 K-SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP 666 (712)
Q Consensus 595 ~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p 666 (712)
. ......++..+|.++...|++++|+..+++++.. .|+...++..+|.++...|+ .+.....+|
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 1 1123457788999999999999999999999998 89999999999999999999 555667789
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
++...+..+|.++...|++++|. ..++.+++..|+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd 459 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ 459 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 99999999999999999999999 999999999997
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=6.9e-22 Score=224.87 Aligned_cols=452 Identities=12% Similarity=0.013 Sum_probs=327.3
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
..+......|++.+|++.+..+...+|....+++.++..|+..|+ +++|+.+++++++.. |.....+..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L 118 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL 118 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence 445556667999999999999999999999999999999999997 999999999999753 3334444445
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH-------------------------------HHHHHHHHHHHHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM 320 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~lg~~~~~ 320 (712)
+.+ +++++|+..|++++...+.....-.... .......++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 554 8899999999988877532111100000 01124445889999
Q ss_pred cCCHHHHHHHHHHHHHHH--------------HHH---------hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 321 LGQLENSLMCYTTGLEVQ--------------KQV---------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (712)
Q Consensus 321 ~g~~~~A~~~~~~al~~~--------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (712)
+|++++|+..+.++++.. ... ..+.-.....++..++..|...|+.++|...+++.-
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999988876541 000 000001223445567788888888888887765532
Q ss_pred HHHHhcCCC------------C---------------------------------------------C------------
Q 005145 378 DIHKDNGSP------------A---------------------------------------------S------------ 388 (712)
Q Consensus 378 ~~~~~~~~~------------~---------------------------------------------~------------ 388 (712)
...+..... . .
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 221110000 0 0
Q ss_pred ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------HhC--------
Q 005145 389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IAN-------- 425 (712)
Q Consensus 389 ------------------~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~-------~~~-------- 425 (712)
+.....+..++......|++++|...|+++.. +. ...
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 00112233345566677888888888877643 11 000
Q ss_pred ----------------------------------CCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 426 ----------------------------------DQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 426 ----------------------------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
...|. ...+++++|.++.. +++.+|+..+.+++..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------- 505 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------- 505 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence 01122 45667888888887 7888899989888877
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|... ....+|.++...|++++|+..|++++... +. ...+..+|.++...|++++|+.+|++++...+.
T Consensus 506 ~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 506 QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 45432 36667777789999999999999875441 11 233678899999999999999999999876432
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
. ...+..++..+...|++++|+..|++++++. +. ..++..+|.++.+.|++++|+.+|++++.+
T Consensus 575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2344456666667799999999999999862 22 478899999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+|+...++.++|.++...|+ .+.....+|+++.+++++|.++..+|++++|. ..|+++++..|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~ 709 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDN 709 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence 99999999999999999999 44445778999999999999999999999999 999999999997
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=6.5e-22 Score=225.50 Aligned_cols=418 Identities=12% Similarity=-0.016 Sum_probs=311.0
Q ss_pred CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005145 194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273 (712)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~ 273 (712)
.....-.|++.+|++.+......+|..+..+..+|..+...|+ +++|+.+|++++.+. |....++..+|.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~ 91 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence 3445566777778877777777788999999999999999997 999999999999864 333556778999
Q ss_pred HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (712)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (712)
++...|++++|+..+++++... ++++ . +..+|.++...|++++|+..+++++++ .|....++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~ 153 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYP 153 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 9999999999999999999875 4432 3 778899999999999999999999998 67788888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHHHHhC
Q 005145 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDH---EAALEHLVLASMTMIAN 425 (712)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~ 425 (712)
..++.++...+..++|+..++++.. .+.... .........+..++. ..+++ ++|+..++.++......
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 8899999999999999999886654 211100 000001112222222 22345 77888888877554322
Q ss_pred C-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 426 D-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 426 ~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
. ..+....+.......+...|++++|+..|++++.. ++..|..+.. .+|.+|..+|++++|+.+|++++...
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 2 22334444444233446789999999999998776 1112444433 36889999999999999999988642
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC-------CC-CCcHHHHHHHHHHHHHHcCCHHH
Q 005145 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQ-QSTVAGIEAQMGVMYYMLGNYSD 576 (712)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~ 576 (712)
.. ...........++.++...|++++|+.+++++....+... .. ......++..+|.++...|++++
T Consensus 303 p~-----~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 303 ET-----IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred CC-----CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 11 1111134566778888999999999999999987754210 11 11234567789999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005145 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
|+..+++++... |....++..+|.++...|++++|+..+++++.+ +|+...++..+|.++...|
T Consensus 378 A~~~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 378 AEMRARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhC
Confidence 999999998862 223579999999999999999999999999999 9999999999999999999
Q ss_pred c-------hhhhCCCChhHHHH
Q 005145 657 R-------EEKLGTANPDVDDE 671 (712)
Q Consensus 657 ~-------~~~l~~~~p~~~~~ 671 (712)
+ .+.+....|+++.+
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 8 34444556666543
No 20
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=3e-22 Score=192.61 Aligned_cols=329 Identities=16% Similarity=0.155 Sum_probs=279.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
-|.-+++.|++...+.+|+.|++.- .++......+|..||.+|+.+++|++|+++...-+.+.+.+ + +....+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEA 95 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEA 95 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccc
Confidence 4788899999999999999999874 44444455679999999999999999999988877776554 2 223456
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HEA 410 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~--------------------~~~ 410 (712)
.+..+||.++...|.|++|+.++.+-+.+.++.++ ....+.+++++|.+|...|+ ++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD--rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD--RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhH--HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 67789999999999999999999999999998874 46678899999999998774 566
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 005145 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490 (712)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 490 (712)
|.++|..-+.+....++......++.++|..|+.+|+|+.|+...+.-+.+.++.+. ......++.+||.++...|++
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD--rAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD--RAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh--HHHHHHhhcccchhhhhhccc
Confidence 778888888888888888888999999999999999999999999999999988763 556678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005145 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (712)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (712)
+.|+++|..++.+..+.. +....+...+.||..|.-..++++|+.|+.+-+.+.... ++......+++.||..|-.
T Consensus 252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA 327 (639)
T ss_pred HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence 999999999999887742 344568889999999999999999999999999998887 6666667889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCH
Q 005145 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (712)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 616 (712)
.|..++|+.+.++.+++..++++..... .+..+|...-...|..
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sgel--Tar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGEL--TARDNLSDLILELGQE 371 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchhh--hhhhhhHHHHHHhCCC
Confidence 9999999999999999999988775443 4556666666666653
No 21
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.90 E-value=9.1e-22 Score=189.37 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=278.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005145 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (712)
Q Consensus 313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (712)
.-|.-+++.|++...+.+|+.|++.-.. +-.....+|..||.+|+.+++|++|+++...-+.+.+..++ ....+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd--klGEA 95 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD--KLGEA 95 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc--hhccc
Confidence 3466778899999999999999998322 12445678899999999999999999998887777766553 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------HHHHH
Q 005145 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------------------YDEAG 452 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 452 (712)
.+--+||.++-..|.|++|+.+..+-+.+.+..++......+++++|.+|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999998875 35677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005145 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
++|..-+++.+..+ +......++-+||..|+.+|+|+.|+...+.-+.+.++. .+....-.++.+||.++.-.|+
T Consensus 176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---GDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---GDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---hhHHHHHHhhcccchhhhhhcc
Confidence 77777777777665 245567899999999999999999999999999998874 2344456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005145 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~ 612 (712)
++.|+++|++++.+..+. +.....+...+.||..|.-..++++|+.|+++-+.+++++++.... ..+++.||..+-.
T Consensus 251 fe~A~ehYK~tl~LAiel-g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe--~RacwSLgna~~a 327 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIEL-GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE--LRACWSLGNAFNA 327 (639)
T ss_pred cHhHHHHHHHHHHHHHHh-cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHh
Confidence 999999999999999887 7777778889999999999999999999999999999998876543 5889999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.|..++|+.+.++.+++..++.++. ....+..+|......+|.
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQ 370 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCC
Confidence 9999999999999999988775432 245567788888888887
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=199.19 Aligned_cols=307 Identities=18% Similarity=0.179 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
..+..|..+...|+ +++|+..|.+++... |....++..+|.++...|++++|+.++++++... ..
T Consensus 37 ~~y~~g~~~~~~~~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~ 101 (389)
T PRK11788 37 RDYFKGLNFLLNEQ-PDKAIDLFIEMLKVD---------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-----DL 101 (389)
T ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-----CC
Confidence 44566888888886 999999999999753 4456788999999999999999999999988742 11
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
.......++..+|.+|...|++++|+.+|.++++. .|....++..++.++...|++++|+..+++++...+.
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 22223456899999999999999999999999876 4566788999999999999999999999998876533
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (712)
Q Consensus 383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (712)
. ........+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 174 ~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 243 (389)
T PRK11788 174 S---LRVEIAHFYCELAQQALARGDLDAARALLKKALAA------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ- 243 (389)
T ss_pred c---chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 2 12233446778999999999999999999999853 3445667889999999999999999999999987
Q ss_pred HHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005145 463 KTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 463 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
.|. ...++..++.+|...|++++|+.++++++... |.. ..+..++.++...|++++|+.+++
T Consensus 244 -------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---------p~~-~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 244 -------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---------PGA-DLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred -------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCc-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 443 35678889999999999999999999998872 112 234789999999999999999999
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 005145 542 KALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISK 587 (712)
Q Consensus 542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 587 (712)
+++...++. . .+..+...+.. .|+..+|+..+++.++.
T Consensus 307 ~~l~~~P~~-------~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRRHPSL-------R-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCcCH-------H-HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 999875433 1 22223333332 56899999999988864
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.7e-22 Score=202.05 Aligned_cols=302 Identities=17% Similarity=0.193 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHc--CCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005145 265 VMCLHVIAAIYCSL--GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (712)
Q Consensus 265 ~~~l~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (712)
...+..+|..|... -+..+|+..|++ +-. +.....+++..+|..|+.+++|++|..+|+.+-++
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~--------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~----- 382 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEK-LPS--------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI----- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 33445555555543 456889999988 321 11112356899999999999999999999998877
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
.|......-....+++.+.+--+---+.+..++..+.. ..+|..+|.+|..+++++.|+++|++|+
T Consensus 383 ---~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s--------PesWca~GNcfSLQkdh~~Aik~f~RAi--- 448 (638)
T KOG1126|consen 383 ---EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS--------PESWCALGNCFSLQKDHDTAIKCFKRAI--- 448 (638)
T ss_pred ---ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC--------cHHHHHhcchhhhhhHHHHHHHHHHHhh---
Confidence 45544444445555555544333333333344433322 2478999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
..+|..+.+|..+|.-+....++|.|..+|+.|+.+ .|....+|+.||.+|.++++++.|+-+|++|+.
T Consensus 449 ---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 449 ---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred ---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 567888999999999999999999999999999998 889999999999999999999999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
+ .|........+|.++.+.|+.++|+.+|++|+.+.+..+ ...+..|.+++..+++++|+..++
T Consensus 518 I---------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-------l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 518 I---------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-------LCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred C---------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHhhcchHHHHHHHH
Confidence 9 566678889999999999999999999999999876652 466788999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+..++. +..+.++..+|.+|.+.|+.+.|+..|.-|.++
T Consensus 582 eLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 582 ELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 987763 344689999999999999999999999999998
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=9.7e-22 Score=191.12 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
-.++++++..|-... .+.+|+..|+-.++ ..--|.....-.++|.++++..+|.+|+.+|+.++...+.+
T Consensus 201 fsvl~nlaqqy~~nd-m~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-- 270 (840)
T KOG2003|consen 201 FSVLFNLAQQYEAND-MTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-- 270 (840)
T ss_pred HHHHHHHHHHhhhhH-HHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--
Confidence 456788888776664 36666666665443 22224445556778999999999999999999999875432
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (712)
....++.++.++|..+.+.|+|+.|+..|+.+++. .|.+. +-++|..|++..|+-++-.+.|++.+.+
T Consensus 271 --nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 271 --NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred --chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 22346778999999999999999999999999988 46554 4456778888899988888888888765
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=9e-21 Score=215.85 Aligned_cols=379 Identities=13% Similarity=0.042 Sum_probs=280.9
Q ss_pred ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 005145 201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280 (712)
Q Consensus 201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~ 280 (712)
+++.++.+.........|.....+...+...+..|+ +++|..+++++...- . ++. . .......++.+|...+.
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~-~~~a~~~~~~~~~~~-~--~~~--~-~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ-SREAADLLLQRYPFQ-G--DAR--L-SQTLMARLASLLESHPY 428 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHhcCCC-c--ccc--c-CHHHHHHHHHHHHhCCc
Confidence 444444433333445558888999999999999996 999999999987631 0 011 1 12233366666666655
Q ss_pred ---HhHHH----------------------HHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 281 ---YNEAI----------------------PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL 335 (712)
Q Consensus 281 ---~~~A~----------------------~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 335 (712)
..+++ ..+..+...... .+.+ ....+++.+|.++.. +++.+|+..|.+++
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~p~~--~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD--MSPS--YDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc--CCCC--CCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 33332 222222222210 0110 123468999999987 89999999999998
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415 (712)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~ 415 (712)
.. .|.. .....+|.++...|++++|+..|++++...+. . ..+..+|.++...|++++|+.+|
T Consensus 504 ~~--------~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-----~----~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 504 QR--------QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-----N----EDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred Hh--------CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-----c----HHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 3432 23666777778999999999999987543211 1 14678899999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495 (712)
Q Consensus 416 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 495 (712)
++++.. .+.....+..++......|++++|+..|++++++ .|. ..++.++|.++.+.|++++|+.
T Consensus 566 ~qAL~l------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 566 QQAEQR------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHHhc------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 999743 3444455556666667779999999999999998 665 7889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 005145 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (712)
+|++++.+ .|....++.++|.++...|++++|+..|++++++.+.. ..++.++|.++...|+++
T Consensus 631 ~l~~AL~l---------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-------~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 631 DLRAALEL---------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-------PALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHH
Confidence 99999999 44557789999999999999999999999999986655 468899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005145 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
+|+.+|++++++. +..+.+....|.+.....++..|.+.+.++..+ .|... +....+.++...
T Consensus 695 eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~ 757 (987)
T PRK09782 695 ATQHYARLVIDDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTAN 757 (987)
T ss_pred HHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhc
Confidence 9999999999862 344567778888888888888888888888877 66655 666777777766
Q ss_pred cc
Q 005145 656 GR 657 (712)
Q Consensus 656 g~ 657 (712)
++
T Consensus 758 ~~ 759 (987)
T PRK09782 758 NN 759 (987)
T ss_pred cc
Confidence 66
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4e-21 Score=197.19 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=241.5
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
.....+..+|..+..... ..+++|+.++++. ...++...+++..+|..|+.+++|++|..+|+.+-++.+-
T Consensus 315 ~l~~llr~~~~~~~~~s~------y~~~~A~~~~~kl--p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~- 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQ------YNCREALNLFEKL--PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY- 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhh--HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 445566666666544432 2345555555553 2333556789999999999999999999999998877421
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
.+...-....+++++.+--+--.+.+..+.. +|....+|..+|.||..+++++.|+++|++|+.
T Consensus 386 --------rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ 449 (638)
T KOG1126|consen 386 --------RVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ 449 (638)
T ss_pred --------cccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence 1111222233334433322211222222222 678889999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
+.+.. +.+|..+|.-+....++|.|..+|+.|+ ..++....+|+.+|.+|.++++++.|+-+|++|
T Consensus 450 ldp~f--------aYayTLlGhE~~~~ee~d~a~~~fr~Al------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 450 LDPRF--------AYAYTLLGHESIATEEFDKAMKSFRKAL------GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred cCCcc--------chhhhhcCChhhhhHHHHhHHHHHHhhh------cCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 87644 3478899999999999999999999998 567888899999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005145 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
+++ +|....+...+|.++.+.|+.++|+.+|++|+.+- +......+..|.++...+++++|+.
T Consensus 516 ~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---------~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 516 VEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---------PKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred hcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---------CCCchhHHHHHHHHHhhcchHHHHH
Confidence 999 89999999999999999999999999999999983 3345668899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+++..++.++. +.+++.+|.+|.+.|+.+.|+..|.-|.++
T Consensus 579 ~LEeLk~~vP~e-------s~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKELVPQE-------SSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhCcch-------HHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999998887765 468899999999999999999999888775
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=7.8e-19 Score=196.12 Aligned_cols=430 Identities=12% Similarity=-0.005 Sum_probs=297.7
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005145 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (712)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 292 (712)
.....|..+...+..+...++.|+ +..|+..|+++++.. |........++.++...|++++|+.++++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 444556666677788888888886 888888888887654 2221112256667777788888888888887
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (712)
. +.... ...+..+|.+|...|++++|+..|+++++. +|....++..++.++...++.++|+..
T Consensus 96 ~-------p~n~~--~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 96 S-------SMNIS--SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred c-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 2 21111 123455577888888888888888888877 566666777778888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005145 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (712)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (712)
+++++...+... .+..++.++...++..+|+..+++++.. .|....++..+..++...|-...|+
T Consensus 159 l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 159 ATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 888776654421 2334455555566666688888777632 2222233333333333333222222
Q ss_pred H-----------------------------------------HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHH
Q 005145 453 F-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMYN 485 (712)
Q Consensus 453 ~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~~ 485 (712)
+ ...+++.....+.. +.++....+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 2 23333333333221 123344556666677788
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 005145 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (712)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (712)
..|++.+++..|+..... +...|. .+...+|..|+..+++++|+.+|..++.-.+........ ......|-
T Consensus 304 ~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~ 374 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLY 374 (822)
T ss_pred HhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHHH
Confidence 899999999999876654 222333 367789999999999999999999997654322111111 12235677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH-H---hC---CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005145 566 VMYYMLGNYSDSYDSFKNAISKLR-A---IG---ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (712)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~-~---~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (712)
.+|...++|++|..++++...... . .+ ....+....+...++.++.-.|++.+|.+.+++.+.. .
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------a 446 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------A 446 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 889999999999999999877322 0 11 1233455688889999999999999999999999988 8
Q ss_pred hhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 639 PDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 639 p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
|.+..++..+|.++...|. .+.....+|+...+...++.++..+|++++|. .....+++.+|+
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe 516 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE 516 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence 9999999999999999999 45555679999999999999999999999999 999999999998
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.7e-20 Score=194.50 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (712)
..+.+|..+...|++++|+..|+++++.. ++. ..++..+|.++...|++++|+..+++++... ....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~ 103 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-----PET----VELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR 103 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-----ccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence 44557899999999999999999999875 333 3458999999999999999999999887641 0111
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005145 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
.....++..+|.+|...|++++|+.+|.++++..+ ....++..++.++...|++++|+..+.+++..... .
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~ 174 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD--------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-S 174 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-c
Confidence 23446789999999999999999999999987522 12347889999999999999999999988753211 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
........+..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++...
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 244 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD-- 244 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 11234556778999999999999999999999987 56667889999999999999999999999999872
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
+.....++..++.+|...|++++|+..+++++...++. ..+..++.++...|++++|+.++++++.
T Consensus 245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--------DLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12235667889999999999999999999998874332 2347899999999999999999999988
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 005145 587 KLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSI 629 (712)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~ 629 (712)
.. +........++..+.. .|+..+|+..+++.++.
T Consensus 311 ~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 311 RH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 62 1222222233333322 45889999999988763
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=9e-21 Score=184.44 Aligned_cols=403 Identities=16% Similarity=0.170 Sum_probs=302.0
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005145 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
....|....+-.++|.++++..+ |.+|+.+|+-||.....+ ........+.++|..+.+.|+|+.|+..|+.+++
T Consensus 230 nkmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsi----nk~~rikil~nigvtfiq~gqy~dainsfdh~m~ 304 (840)
T KOG2003|consen 230 NKMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSI----NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCME 304 (840)
T ss_pred ccccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhcccc----chhhHHHHHhhcCeeEEecccchhhHhhHHHHHH
Confidence 44567777778899999999975 999999999999876332 2234577899999999999999999999999987
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------hCCCChhH------------------
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV------LGETDPRV------------------ 349 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~------------------ 349 (712)
.. | .+.+-++|..|++..|+-++-.+.|++.+.+-..+ ...++|..
T Consensus 305 ~~-----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 305 EA-----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hC-----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 75 2 22346778888899999888888888876652110 00011110
Q ss_pred --------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 350 --------------------------------------------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 350 --------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
...-.+-+..+++.|+++.|++.+.-.-. .
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~----k-- 448 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK----K-- 448 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh----c--
Confidence 01112234445566666666655432211 1
Q ss_pred CCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 386 PASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
+......+-.+|..+++.+| ++..|..+...++ ..+...+.++.+.|.+.+..|++++|.+.|++++.-
T Consensus 449 -dnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-- 519 (840)
T KOG2003|consen 449 -DNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-- 519 (840)
T ss_pred -cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--
Confidence 11111223445555555533 5666777766665 334455677788888889999999999999999875
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005145 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
+.....+++++|..+..+|+.++|+.+|-+.-.+... .+.++..++.+|..+.+..+|++++.++
T Consensus 520 ------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 520 ------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred ------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7778899999999999999999999999998888654 4788999999999999999999999999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
..+.+.. ..++..||.+|-+.|+-.+|.+++-.....+ +....+..+||..|....=+++|+.+|
T Consensus 585 ~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 585 NSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred cccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8887655 2578899999999999999998887776543 223466778899999998899999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhcc
Q 005145 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGR 684 (712)
Q Consensus 624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~ 684 (712)
++|.-+ .|........+|.|+.+.|+ ++......|++.+++.-|.++...+|-
T Consensus 650 ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999888 89888888999999999999 455556788899998888888877764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=1.9e-18 Score=182.85 Aligned_cols=381 Identities=14% Similarity=0.075 Sum_probs=280.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
....++..|+.++..|+ +++|+.++.++++.. |....+|+.||.+|..+|+.+++...+-.|..+.
T Consensus 138 ~l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqd---------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---- 203 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGD-LEEAEEILMEVIKQD---------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---- 203 (895)
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC---------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----
Confidence 35678899999999997 999999999999875 5567889999999999999999999998887776
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (712)
+.+. ..|..++.....+|++.+|.-+|.+|++. .|......+..+.+|.+.|+...|...|.+++..
T Consensus 204 -p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 204 -PKDY----ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred -CCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 4443 34999999999999999999999999999 6778888999999999999999999999999988
Q ss_pred HHhcCCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 380 HKDNGSPASLEE-AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 380 ~~~~~~~~~~~~-a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
.+.. .... -......+..+...++-+.|++.++.++... ........++.++.++.....++.|.......
T Consensus 271 ~p~~----d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~----~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 271 DPPV----DIERIEDLIRRVAHYFITHNERERAAKALEGALSKE----KDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred CCch----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc----cccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 8622 2222 2233445777888888899999999887521 22222334567788999999999998887665
Q ss_pred HHHH---------------------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005145 459 LTAF---------------------KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (712)
Q Consensus 459 l~~~---------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (712)
...- -.....-......+...++.+..+.++..+++..+..--.. ...+..
T Consensus 343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~--------~~~d~~ 414 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV--------WVSDDV 414 (895)
T ss_pred hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC--------ChhhhH
Confidence 5410 00000011222223555666666666666666554332211 134567
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
..+..++.+|...|++.+|+.+|..+..... ...+.+|..+|.+|..+|.+++|+++|++++... +
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p 480 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREG------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--------P 480 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------C
Confidence 7899999999999999999999988775432 2225689999999999999999999999999862 3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 598 FFGVALNQMGLACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
....+...|+.++.++|++++|.+.++....-- +..-+...+...........+|...|+
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 344788999999999999998888777633100 000000122344556667777777777
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=2.8e-19 Score=203.46 Aligned_cols=430 Identities=12% Similarity=0.048 Sum_probs=315.5
Q ss_pred cCCCcccccccccccCccccccCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
.....+...|++.+|++.+...... .+.....+..+...+...++ ++.|..++..+.+.- -. |+ ...+.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~--~~-~~~~n 162 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FE--PD-QYMMN 162 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CC--cc-hHHHH
Confidence 3344456777777777555444322 22345566777777888876 899988887776531 12 22 45677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ--------- 340 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------- 340 (712)
.+..+|.+.|++++|..+|++..+- ...+|..+...|...|++++|+..|++.++....
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 7889999999999999999987531 1235889999999999999999999998653100
Q ss_pred -------------------HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005145 341 -------------------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401 (712)
Q Consensus 341 -------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~ 401 (712)
.....-.....++..|...|.+.|++++|.++|++... ++ ..+|+.+...
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~----~vt~n~li~~ 299 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KT----TVAWNSMLAG 299 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CC----hhHHHHHHHH
Confidence 00000001123456677888999999999998876531 11 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005145 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (712)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (712)
|...|++++|+..|.+... .+..|+ ..++..+...+...|++++|...+..+++. ..+....++..|.
T Consensus 300 y~~~g~~~eA~~lf~~M~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li 367 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRD----SGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALV 367 (697)
T ss_pred HHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHH
Confidence 9999999999999987643 233333 347888888999999999999999888765 2334466888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005145 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (712)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (712)
..|.+.|++++|...|++..+. ...+|+.+...|...|+.++|+++|++.... |..+.. .++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~-~T~ 429 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPNH-VTF 429 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCH-HHH
Confidence 9999999999999999876421 2456899999999999999999999997754 333332 467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 005145 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (712)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~ 641 (712)
..+...+.+.|..++|..+|+...+. .+ ..+. ...|..+..+|.+.|++++|.+++++. +..|+
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~---~g-~~p~--~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~- 493 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSEN---HR-IKPR--AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT- 493 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHh---cC-CCCC--ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-
Confidence 77888899999999999999987652 11 1121 256888999999999999999987653 12444
Q ss_pred HHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005145 642 LGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 700 (712)
Q Consensus 642 ~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~ 700 (712)
..+|..|...+...|+ .+.+....|+....|..|..+|.+.|++++|. +.++.+.+..
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g 558 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence 3468888888888888 34455677887888999999999999999999 9998887653
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4e-18 Score=167.29 Aligned_cols=352 Identities=15% Similarity=0.098 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------h-------------cCCCCCHHHHHHHHHHHHHHHHcCC
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEI-------G-------------ANGKPSLELVMCLHVIAAIYCSLGQ 280 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~-------~-------------~~~~~~~~~~~~l~~la~~~~~~g~ 280 (712)
...++..|.++...|. ...|+..+..++..+.. + ..+-+.......-..++.++....+
T Consensus 164 ~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGL-LSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hHHHHHHHHHHHhhch-HHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 5566666777766664 67777777666552200 0 0001100122233345556666666
Q ss_pred HhHHHHHHHHhhch-hhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 281 YNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (712)
Q Consensus 281 ~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (712)
.++++.-++....+ . +..+. .-...|.+.....++++|+..|+..++. +|-...-+-....+
T Consensus 243 ~~e~~~k~e~l~~~gf-----~~~~~----i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGF-----PNSMY----IKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNV 305 (559)
T ss_pred HHHHHHHHHHHHhccC-----CccHH----HHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHH
Confidence 66666666555544 1 22211 2345666677777777777777776554 34333333333333
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
++...+-.+---+.+.+..+.+-.. .+...+|..|...+++++|+.+|++|+ ..+|....+|..+|
T Consensus 306 LYv~~~~skLs~LA~~v~~idKyR~--------ETCCiIaNYYSlr~eHEKAv~YFkRAL------kLNp~~~~aWTLmG 371 (559)
T KOG1155|consen 306 LYVKNDKSKLSYLAQNVSNIDKYRP--------ETCCIIANYYSLRSEHEKAVMYFKRAL------KLNPKYLSAWTLMG 371 (559)
T ss_pred HHHHhhhHHHHHHHHHHHHhccCCc--------cceeeehhHHHHHHhHHHHHHHHHHHH------hcCcchhHHHHHhh
Confidence 4433332222222233333322111 134567889999999999999999999 46788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (712)
.-|..+.+...|+..|++|+++ .|...++|+.||+.|.-++-..=|+-+|++|+.. .|.....
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---------kPnDsRl 434 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---------KPNDSRL 434 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---------CCCchHH
Confidence 9999999999999999999999 8999999999999999999999999999999998 4455788
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (712)
|..||.+|.+.++.++|+++|.+|+...... ..++..||.+|.+.++..+|..+|++.++.....+...+ ..
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte-------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t 506 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTE-------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-ET 506 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-HH
Confidence 9999999999999999999999999874432 358899999999999999999999999997755555443 34
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
..+...|+..+...+++++|..+..+++.-
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 566667999999999999999988877664
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.1e-19 Score=177.44 Aligned_cols=405 Identities=20% Similarity=0.233 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
-+...|...+..|+ |+.|+.+|.+|+.+. |.....|.+...+|..+|+|++|+.--.+.+++. |.
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 35667889999997 999999999999864 2245678889999999999999999999999886 44
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC-----------------
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------------- 365 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 365 (712)
.+ ..|..+|..+..+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 WA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred hh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 43 35999999999999999999999999998 78888888888877722210
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--------------
Q 005145 366 ----FSEAQKFCQMALDIHKDNGSPAS--LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-------------- 425 (712)
Q Consensus 366 ----~~~A~~~~~~al~~~~~~~~~~~--~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 425 (712)
+-.....|...+...++....-. .........+|.+.. .+.. ..+...+......
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCcc
Confidence 11111222333333322211000 000000001111100 0000 0000000000000
Q ss_pred CCCh------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 426 DQDA------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 426 ~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
.+.. ..+.-...+|...+...++..|+++|..++++ . .....+.+.+.+|+..|.+.+++..+..
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 0001 13455678999999999999999999999999 5 5677888999999999999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
+++...... .+...++.++..+|..|..+++++.|+.+|++++..... ..+.-.....++++.
T Consensus 283 a~E~gre~r--ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 283 AVEVGRELR--ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK 345 (539)
T ss_pred HHHHhHHHH--HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence 888754320 111225666667888999999999999999998876543 223333444445544
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005145 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-- 657 (712)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-- 657 (712)
..+...-+ .+..+.-...-|..++..|+|..|+.+|.+|+.. +|+....|.|.|.||..+|.
T Consensus 346 ~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 346 EAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence 44433222 1223455556689999999999999999999988 89999999999999999998
Q ss_pred -----hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 658 -----EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 658 -----~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.+.....+|.....|.+-|.++..+.+|++|. +.|++.++.+|+
T Consensus 410 ~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~ 458 (539)
T KOG0548|consen 410 EALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence 45556789999999999999999999999999 999999999886
No 34
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=2.7e-16 Score=180.76 Aligned_cols=407 Identities=11% Similarity=0.044 Sum_probs=232.7
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
.....++.+-..+.+.|+ +++|+.+|++.... +...+ ....+..+...+...|..++|..+++....
T Consensus 368 ~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv~~-~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLLDM-DKIYHAKFFKACKKQRAVKEAFRFAKLIRN----- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCCCc-hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----
Confidence 334444444455667776 77777777765431 11111 122333444556666777777776665432
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
| ...+|..+-..+...|+++.|...|.++.+.- ......+|..+...|.+.|++++|..+|+++..
T Consensus 435 -----p--d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 435 -----P--TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred -----C--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 1 12346666666777777777777777665431 112234566666777777777777777776654
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
.. ..++ ..+|..+...|...|++++|+..|.+... .+..|+ ..+|..+...|.+.|++++|..+|.+.
T Consensus 501 ~G---v~Pd----vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 501 AG---VEAN----VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred cC---CCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 1111 23566677777777777777777765432 122333 345666677777777777777777666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005145 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
....... .|+ ..+|..+...|.+.|++++|.++|+++.+..- .....+|..+...|.+.|++++|+.
T Consensus 569 ~~~~~gi----~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--------~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 569 KAETHPI----DPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNI--------KGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHhcCCC----CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CCChHHHHHHHHHHHhcCCHHHHHH
Confidence 5421000 222 34666666677777777777777776655411 1123456667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005145 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 618 (712)
+|.+.... |..+. ..+|..+...|.+.|++++|..+++++.+. +-.. ...++..|...|.+.|++++
T Consensus 636 lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~p---d~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 636 IYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKL---GTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHhCCCHHH
Confidence 77766542 22222 235666667777777777777777666542 1111 12566667777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhh-h-CCCChhHHHHHHHHHHHHHHhccHHHHH
Q 005145 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEK-L-GTANPDVDDEKRRLAELLKEAGRVRSRK 689 (712)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~-l-~~~~p~~~~~~~~la~~~~~~g~~~~A~ 689 (712)
|..+|++.... + ..|+ ..+|..|...|...|+ ... . ....|+ ..++..|...+.+.|++++|.
T Consensus 703 A~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 703 ALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 77777665432 1 1333 3456677777777766 111 1 112333 334555666777777777777
Q ss_pred HHHHHHHHHh
Q 005145 690 AQSLETLLDA 699 (712)
Q Consensus 690 ~~~l~~~l~~ 699 (712)
+.+..+++.
T Consensus 775 -~l~~~M~k~ 783 (1060)
T PLN03218 775 -DLLSQAKED 783 (1060)
T ss_pred -HHHHHHHHc
Confidence 766666553
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.5e-18 Score=165.02 Aligned_cols=339 Identities=18% Similarity=0.145 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc----------cc---------h-HHHHHHHHHHHHHHHHcCCH
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ----------EH---------A-LAKFAGHMQLGDTYAMLGQL 324 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~---------~-~~~~~~~~~lg~~~~~~g~~ 324 (712)
...++..|.++...|....|+..|..++...+-..+. .. + ...+..-..++.+|....+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998887643211000 00 0 00111123445556666666
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005145 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (712)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~ 404 (712)
++++.-++..... .-|.....-...|.+.+...++++|+..|+..++..+ .......+|.+ +++-
T Consensus 244 ~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~dmdlySN---~LYv 308 (559)
T KOG1155|consen 244 EEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLDDMDLYSN---VLYV 308 (559)
T ss_pred HHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcchhHHHHhH---HHHH
Confidence 6666655554443 1345555666778888899999999999988776532 23333333333 3333
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005145 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
..+-. .+.++.+-. . ..+.....+.+.+|..|...++.++|+.+|++|+++ +|....+|..+|.-|
T Consensus 309 ~~~~s-kLs~LA~~v--~---~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 309 KNDKS-KLSYLAQNV--S---NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY 374 (559)
T ss_pred HhhhH-HHHHHHHHH--H---HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH
Confidence 32211 222221111 1 122333456677899999999999999999999999 999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005145 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
..+.+...|+..|+.|+++ .|....+|+.||+.|..++-+.=|+-+|++|+...|.. ..+|..|
T Consensus 375 vEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-------sRlw~aL 438 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND-------SRLWVAL 438 (559)
T ss_pred HHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-------hHHHHHH
Confidence 9999999999999999999 45568899999999999999999999999999986654 3688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005145 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 644 (712)
|.+|.++++.++|+.+|.+|+..- .....++..||.+|.++++..+|..+|++.++.. ...|.-.|.+..+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHH
Confidence 999999999999999999999852 1234789999999999999999999999999975 4445556777777
Q ss_pred HHHHHHHHHHccc
Q 005145 645 YSNLAGTYDAIGR 657 (712)
Q Consensus 645 ~~~La~~~~~~g~ 657 (712)
..-||.-+...++
T Consensus 510 ~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 510 RLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHhhcc
Confidence 7778888777665
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.5e-18 Score=172.04 Aligned_cols=379 Identities=18% Similarity=0.196 Sum_probs=270.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch------
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------ 294 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~------ 294 (712)
..-.+.+|++++..++ |.+|......- ++. .....+.+..+.++....+|+.|..++.++-..
T Consensus 49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~le---------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KLE---------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 3345677888988886 77776665443 111 122557788899999999999999988743110
Q ss_pred hhhh---------hcccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---------------------hC
Q 005145 295 PVIE---------EGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---------------------LG 343 (712)
Q Consensus 295 ~~~~---------~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~~ 343 (712)
.... .+.+. .......++..|.+|....++++|...|.+|+..-... +.
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~ 197 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLE 197 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHh
Confidence 0000 00000 01123356778899999999999999998886541110 00
Q ss_pred --------CCC--------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 344 --------ETD--------------------------------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 344 --------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
..+ ......+...+..++..++|.+..+.+...++..+-.
T Consensus 198 ~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh 277 (611)
T KOG1173|consen 198 SLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH 277 (611)
T ss_pred cccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC
Confidence 000 0112333444555555666666666666665555433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 384 ~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
.. ..-..+| ++...|+..+-...-.+.. ...|..+..|+.+|..|...|++.+|.++|-++..+
T Consensus 278 ~~-------~~~~~ia-~l~el~~~n~Lf~lsh~LV------~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-- 341 (611)
T KOG1173|consen 278 LP-------CLPLHIA-CLYELGKSNKLFLLSHKLV------DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-- 341 (611)
T ss_pred cc-------hHHHHHH-HHHHhcccchHHHHHHHHH------HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--
Confidence 22 1223344 4445554433322222222 456777888999999999999999999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005145 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
++..+.+|..+|..+...|..++|+.+|..|-+++... ..| ...+|.-|...++++-|.++|.+|
T Consensus 342 ------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~----hlP-----~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 342 ------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC----HLP-----SLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred ------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC----cch-----HHHHHHHHHHhccHHHHHHHHHHH
Confidence 88899999999999999999999999999999997553 223 457899999999999999999999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
+.+.|..+ -++..+|.+.+..+.|.+|..+|+.++...+....... .....+.+||.+|.+++.+++|+.+|
T Consensus 407 ~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 407 LAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99988763 47788999999999999999999999988777766654 45678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
++++.+ .|..+.++..+|.+|..+|+
T Consensus 479 q~aL~l--------~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 479 QKALLL--------SPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred HHHHHc--------CCCchhHHHHHHHHHHHhcC
Confidence 999998 77777777777766666665
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.6e-17 Score=176.05 Aligned_cols=377 Identities=16% Similarity=0.162 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (712)
.+...|...+..|++++|..++.++++.. +.++. +|+.||.+|..+|+.+++...+-.|-.+ +
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~ 203 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL--------N 203 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc--------C
Confidence 45556788888899999999999999886 44443 4999999999999999999999888777 5
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005145 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
|.....|..++.....+|.+.+|.-+|.+|+...+... ...+..+.+|...|++..|+..|.+.+.... ..
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~ 274 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PV 274 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-ch
Confidence 66668999999999999999999999999999876552 3677889999999999999999999886433 01
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR---- 502 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---- 502 (712)
+....-......+..+...++-+.|++.+..++.... .......+..++.++.....++.|.........
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 1112233344557888888888999999999988422 223344566888999999999999888766655
Q ss_pred ------------------HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005145 503 ------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 503 ------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
++.- +......+..+...++.+..+.++..+++..+..--.. ........+..+
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYLDL 420 (895)
T ss_pred CChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHHHH
Confidence 1111 01112222223556666666666666666555322111 123445788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005145 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 644 (712)
+.+|...|++.+|+.+|..++.. .....+.+|+.+|.||..+|.+++|+++|++++.+ .|+..++
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~ 485 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA 485 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence 99999999999999999988763 22334679999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHccc----hhhhCC-CChh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005145 645 YSNLAGTYDAIGR----EEKLGT-ANPD-----------VDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 699 (712)
Q Consensus 645 ~~~La~~~~~~g~----~~~l~~-~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~ 699 (712)
...|+.+|..+|+ .+.+.+ .+|+ ......+...+|...|+.++-+ ...-.++..
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~~ 555 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVDD 555 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence 9999999999999 233322 1222 2345678889999999999877 555555543
No 38
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=4.8e-17 Score=169.57 Aligned_cols=427 Identities=14% Similarity=0.057 Sum_probs=323.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+.++-.+...+...|+ |..+.+.|++++... ......|+.++.+|...|....|+.+++..+...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~---------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~- 389 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFS---------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ- 389 (799)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh---------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC-
Confidence 455566667777777776 888888888887654 223567888999999999999999999998877532
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-----------CHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS 367 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~ 367 (712)
+.++.. .++.-..|+...+.+++++.+..+++...... .......++..+|.+|..+- ...
T Consensus 390 --ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 390 --PSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred --CCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 333322 35555667778899999999999999976332 23345667777887776432 245
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 005145 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (712)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (712)
++++.+++|+++.+.+. .+.+.++.-|..+++.+.|+.+..+++.. .....+.++..++.++...++
T Consensus 462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhh
Confidence 66777777777655443 26889999999999999999999999854 234456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005145 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (712)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (712)
+.+|+.+...+++- .+.+.........+-...++.++|+..+...+.+++...+-...-+.......-+.+.
T Consensus 529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 99999999999987 4554455555556666789999999999999999875321100111122233334444
Q ss_pred HHcccHHHHHHHHHHHHHHHHhC----------------CCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQS---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
....+..+|++.+.++..+.... ++... ....+|...+..+...++.++|..++.+|-.+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 45556777777777666554421 01111 233456778899999999999999999998763
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---------hh
Q 005145 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---------EE 659 (712)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---------~~ 659 (712)
+..+..|+..|.++..+|++.+|.+.|..|+.+ +|+...+...||.++...|+ ..
T Consensus 681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 456789999999999999999999999999999 99999999999999999999 22
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 660 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 660 ~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.....+|.+.++|+.||.++.++|+.++|. ..|..++++.+.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 334678999999999999999999999999 999999998887
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.7e-18 Score=169.19 Aligned_cols=290 Identities=18% Similarity=0.157 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005145 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
.+....+..++..++|.+..+.+...++. +|....++ ..+| ++...|+..+-..+-.+.++..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~--------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~---- 311 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK--------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK---- 311 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh--------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC----
Confidence 35777888999999999999999998887 44433333 4555 7888887766555555555555443
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005145 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
+..|+.+|..|...|++.+|..+|.++. ..++..+.+|...|..|...|..++|+..|..|-++
T Consensus 312 ----a~sW~aVg~YYl~i~k~seARry~SKat------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl------ 375 (611)
T KOG1173|consen 312 ----ALSWFAVGCYYLMIGKYSEARRYFSKAT------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL------ 375 (611)
T ss_pred ----CcchhhHHHHHHHhcCcHHHHHHHHHHh------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh------
Confidence 3469999999999999999999999986 457788889999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
-+........+|.-|.+++.+.-|..+|.+|+.++. ..+.++..+|.+.+..+.|.+|..+|+.++...
T Consensus 376 --~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P---------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 376 --MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP---------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred --ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC---------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 444455677889999999999999999999999943 346679999999999999999999999999887
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (712)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 627 (712)
+...........++.+||.+|.+++.+++|+.+|++++.+ .+..+.++..+|.+|..+|+++.|+++|.+|+
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 7765544456667899999999999999999999999986 23446889999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005145 628 SILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 628 ~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
.+ .|+...+-..|+.+...
T Consensus 517 ~l--------~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 517 AL--------KPDNIFISELLKLAIED 535 (611)
T ss_pred hc--------CCccHHHHHHHHHHHHh
Confidence 99 78776665556555443
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-17 Score=167.55 Aligned_cols=387 Identities=19% Similarity=0.163 Sum_probs=276.3
Q ss_pred CCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005145 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (712)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la 272 (712)
......+.|+|..|+..|.++...+|.+...+.+...+|...|+ |++|+.-..+.+++. |.++..|..+|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~G 77 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKG 77 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhH
Confidence 34456677889999999999999999999999999999999997 999999999888765 77899999999
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHH
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCY 331 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------------~~~~A~~~~ 331 (712)
..+.-+|+|++|+..|.+.|+.. +.+.. ++..|+.++.... ++-.....|
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d-----~~n~~----L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKD-----PSNKQ----LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcC-----CchHH----HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 99999999999999999999886 33322 2444444441110 001111122
Q ss_pred HHHHHHHHHH--------------------hC----------------CCCh---------------------hHHHHHH
Q 005145 332 TTGLEVQKQV--------------------LG----------------ETDP---------------------RVGETCR 354 (712)
Q Consensus 332 ~~al~~~~~~--------------------~~----------------~~~~---------------------~~~~~~~ 354 (712)
...++..+.. .+ ...| ..+...-
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 2222221110 00 0000 1234456
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCChhHHH
Q 005145 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVAS 433 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~ 433 (712)
.+|...+...++..|++.|..++++.... ..+.+.+.+|+..|.+.+.+.....+++..... .+...++.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~i---------t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDI---------TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhh---------HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 67777777788888888888888777222 246677777777777777777777665432211 11222455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005145 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
++..+|..|...++++.|+.+|++++.-.+ . ..+.......++++...+...-+ .
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--------t--------~~~ls~lk~~Ek~~k~~e~~a~~---------~ 354 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHR--------T--------PDLLSKLKEAEKALKEAERKAYI---------N 354 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--------C--------HHHHHHHHHHHHHHHHHHHHHhh---------C
Confidence 555677777778888888888888766522 1 23333334444444444443333 4
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005145 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
|..+.-...-|..++..|+|..|+..|.+|+...++. +..|.+.|.+|..+|.+..|+...+.++++
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL------ 421 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-------ARLYSNRAACYLKLGEYPEALKDAKKCIEL------ 421 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 4456666677999999999999999999998876544 578999999999999999999999999986
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005145 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 594 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
.+.....|..-|.++..+.+|++|.+.|++++++ +|....+...+..|+..+
T Consensus 422 --~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 --DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999998 899999999999998864
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.4e-16 Score=178.16 Aligned_cols=425 Identities=12% Similarity=-0.021 Sum_probs=304.2
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
..+-...++|++..|++.+.++...+|.....+..++.++...|+ +++|+.++++++. .. +.....+..+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~-------p~--n~~~~~llal 108 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS-------SM--NISSRGLASA 108 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc-------CC--CCCHHHHHHH
Confidence 455567788999999999999999999986555588888888886 8999999999972 11 2224455566
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
|.+|...|+|++|+++|+++++.. |+.+. ++..++.++...++.++|+..+++++.. +|....
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~ 171 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQN 171 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHH
Confidence 889999999999999999999986 55544 3668899999999999999999998877 455333
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------
Q 005145 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL---------------- 415 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~---------------- 415 (712)
+..++.++...++..+|+..++++++..+.... .+..+..++...|-...|++..
T Consensus 172 -~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 172 -YMTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 345566666677787799999999988765432 2233333333333222222221
Q ss_pred -------------------------HHHHH----HHHhCCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 416 -------------------------VLASM----TMIANDQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (712)
Q Consensus 416 -------------------------~~al~----~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (712)
++++. +...... .+....+....-.++...|++.+++..|+.....
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~- 321 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE- 321 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-
Confidence 11211 1111112 1233445555566677888899888888776543
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005145 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (712)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (712)
+..-| ..+....|..|...++.++|+.+|..++.-..... ..+........|...|...+++++|..++++
T Consensus 322 ----~~~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 322 ----GYKMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred ----CCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 11124 45777889999999999999999999976532110 1122233346788899999999999999999
Q ss_pred HHHHHHh-C--C-----CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005145 543 ALKIYND-A--P-----GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (712)
Q Consensus 543 al~~~~~-~--~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 614 (712)
.....+- . . ..++........++.++...|++.+|++.+++.+... |....++..+|.++...|
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARD 464 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcC
Confidence 9874431 0 1 2334566778889999999999999999999997752 334578889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHH
Q 005145 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELL 679 (712)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~ 679 (712)
.+.+|...++.++.+ +|+...+...+|.++..+|+ ...+....|+...+. +|...+
T Consensus 465 ~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~-~l~r~~ 527 (822)
T PRK14574 465 LPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ-ELDRQR 527 (822)
T ss_pred CHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH-HHHHHH
Confidence 999999999998888 99999999999999999999 333456667766432 444433
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=1.5e-15 Score=174.57 Aligned_cols=344 Identities=14% Similarity=0.089 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
.+..+-..+...|+ ++.|..+|.++.+.- .. |+ ...|..+...|.+.|++++|..+|++..... .
T Consensus 439 Tyn~LL~a~~k~g~-~e~A~~lf~~M~~~G-----l~--pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v- 503 (1060)
T PLN03218 439 TFNMLMSVCASSQD-IDGALRVLRLVQEAG-----LK--AD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V- 503 (1060)
T ss_pred HHHHHHHHHHhCcC-HHHHHHHHHHHHHcC-----CC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-
Confidence 34444455556664 666666666654321 11 22 3456667777778888888888877765431 1
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
.| ...+|..+...|...|++++|+.+|..+...- -.|+ ..+|..+...|.+.|++++|.+++.++......
T Consensus 504 ~P--dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 504 EA--NVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 11 22357777778888888888888777765431 1233 356777777788888888888888777553111
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (712)
Q Consensus 383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (712)
. .++ ..+|..+...|...|++++|.+.|+..... + ......+|..+...|.+.|++++|+.+|.+....
T Consensus 575 i-~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~- 643 (1060)
T PLN03218 575 I-DPD----HITVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK- 643 (1060)
T ss_pred C-CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Confidence 1 111 236677777788888888888888766431 1 1223456777777788888888888888776553
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005145 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (712)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (712)
+ -.|+ ...|..+...|.+.|++++|.+++.++.+.... + ...++..|...|.+.|++++|..+|++
T Consensus 644 ----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-------p-d~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 644 ----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-------L-GTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred ----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 1232 456777777888888888888888777654111 1 245677778888888888888888877
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (712)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 622 (712)
.... +..+.. .+|..+...|.+.|++++|+++|++.... +- .+. ..+|..+...|...|++++|..+
T Consensus 710 M~~~-----g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi-~Pd--~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 710 IKSI-----KLRPTV-STMNALITALCEGNQLPKALEVLSEMKRL----GL-CPN--TITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred HHHc-----CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 6542 222222 46777788888888888888888776532 11 111 24566666777788888888887
Q ss_pred HHHHHH
Q 005145 623 FEEARS 628 (712)
Q Consensus 623 ~~~al~ 628 (712)
|.++.+
T Consensus 777 ~~~M~k 782 (1060)
T PLN03218 777 LSQAKE 782 (1060)
T ss_pred HHHHHH
Confidence 777655
No 43
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=3.9e-16 Score=182.11 Aligned_cols=426 Identities=14% Similarity=0.054 Sum_probs=266.9
Q ss_pred CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---------------------
Q 005145 194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF--------------------- 252 (712)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~--------------------- 252 (712)
...+.+.|++..|...|.+....+ ...+..+...|.+.|+ +++|+++|.+....-
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 344556666666665555554433 3456777778888886 899999888875421
Q ss_pred -------HHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHH
Q 005145 253 -------EIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325 (712)
Q Consensus 253 -------~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 325 (712)
.......-.| ....+..|...|.+.|++++|..+|++... + ...+|..+...|...|+++
T Consensus 305 ~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~-----d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 305 RLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------K-----DAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-----CeeeHHHHHHHHHhCCCHH
Confidence 0000000001 123344455555666666666666655321 1 1113555666666666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 005145 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405 (712)
Q Consensus 326 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~ 405 (712)
+|+.+|++..+.. -.|+. .++..+-..+...|+++.|.+++..+++..... ...++..|...|.+.
T Consensus 372 ~A~~lf~~M~~~g------~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-------~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 372 KALETYALMEQDN------VSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLIS-------YVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHHHHhC------CCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHc
Confidence 6666666543320 01222 233334445556666666666666554432111 123567777888888
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH------------
Q 005145 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV------------ 473 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------ 473 (712)
|++++|.+.|++.. . + ...+|+.+...|...|++++|+.+|++.+.. ..++....
T Consensus 438 g~~~~A~~vf~~m~-------~-~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 438 KCIDKALEVFHNIP-------E-K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGA 504 (857)
T ss_pred CCHHHHHHHHHhCC-------C-C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhch
Confidence 88888888887542 1 1 1346777778888888888888888887531 11111100
Q ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005145 474 -------------------ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (712)
Q Consensus 474 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (712)
...+..|...|.+.|++++|...|+.. .. ...+|+.+...|...|+.+
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHH
Confidence 112233446677777777777777654 11 2457888999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005145 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (712)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 614 (712)
+|+.+|++..+. |..+.. .++..+-..+.+.|++++|..+|+...... + ..+. ...|..+..++.+.|
T Consensus 572 ~A~~lf~~M~~~-----g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---g-i~P~--~~~y~~lv~~l~r~G 639 (857)
T PLN03077 572 MAVELFNRMVES-----GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY---S-ITPN--LKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHHHHHc-----CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh---C-CCCc--hHHHHHHHHHHHhCC
Confidence 999999987753 222221 245566677889999999999999876432 1 1121 267889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHH
Q 005145 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRS 687 (712)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~ 687 (712)
++++|.+++++.- + .|+ ..+|..|...+...|+ .+.+....|++...+..|+.+|...|+|++
T Consensus 640 ~~~eA~~~~~~m~-~--------~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 640 KLTEAYNFINKMP-I--------TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CHHHHHHHHHHCC-C--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 9999999988751 1 444 3456666666666666 345557788888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005145 688 RKAQSLETLLDA 699 (712)
Q Consensus 688 A~~~~l~~~l~~ 699 (712)
|. +..+.+.+.
T Consensus 710 a~-~vr~~M~~~ 720 (857)
T PLN03077 710 VA-RVRKTMREN 720 (857)
T ss_pred HH-HHHHHHHHc
Confidence 99 887777654
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.79 E-value=1.1e-15 Score=144.62 Aligned_cols=364 Identities=13% Similarity=0.081 Sum_probs=274.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (712)
Q Consensus 260 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 339 (712)
.++..+.-++.+|..++..|++..|+..|..|++.. |+ ...+++..|.+|..+|+-..|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PN----NYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----ch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 345566778889999999999999999999999886 33 3345899999999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHcCCHHHHH
Q 005145 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLICETKGDHEAAL 412 (712)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~la~~~~~~g~~~~A~ 412 (712)
.|+...+....|.+++++|++++|..-|...+...+..+... ....-..+......+...|++..|+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 789999999999999999999999999999997665433210 0111223334455566789999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 005145 413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492 (712)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 492 (712)
++....+ ...+..+..+...+.+|...|+...|+.-++.+-.+ ..+....++.++.+++..|+.+.
T Consensus 176 ~~i~~ll------Ei~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 176 EMITHLL------EIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHHH------hcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHH
Confidence 9998887 356777888999999999999999999999999888 66778899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHH---------HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 005145 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDV---------SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (712)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (712)
++...++++++- .++..-...|..| +.-....++|.++++..++.++..+.. ..........
T Consensus 242 sL~~iRECLKld------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~ 312 (504)
T KOG0624|consen 242 SLKEIRECLKLD------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRV 312 (504)
T ss_pred HHHHHHHHHccC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeehe
Confidence 999999999983 2233222223322 223445667777777777776654432 2222344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005145 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (712)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 643 (712)
+..++..-|++.+|+....+++++ .+..+.++...|.+|+....|+.|+.-|++|.++ +++...
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--------n~sn~~ 376 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--------NESNTR 376 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------CcccHH
Confidence 788899999999999999999986 3445689999999999999999999999999998 665555
Q ss_pred HHHHHHHHH---HHccc---hhhhC----CCChhHHHHHHHHHHHH
Q 005145 644 VYSNLAGTY---DAIGR---EEKLG----TANPDVDDEKRRLAELL 679 (712)
Q Consensus 644 ~~~~La~~~---~~~g~---~~~l~----~~~p~~~~~~~~la~~~ 679 (712)
+...+-.+- ...|+ ++.+| ....+...+|..+|.-+
T Consensus 377 ~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 377 AREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKW 422 (504)
T ss_pred HHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence 555444332 22333 44444 22334455566665544
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=6.6e-17 Score=151.74 Aligned_cols=288 Identities=19% Similarity=0.152 Sum_probs=234.8
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005145 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK-PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
...|.....++.. .++...| ..+|-..+...+++-.....+. ......+.-..+|.||+++|-+.+|.+.++.+++
T Consensus 175 a~~p~l~kaLFey--~fyhenD-v~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~ 251 (478)
T KOG1129|consen 175 AERPTLVKALFEY--LFYHEND-VQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT 251 (478)
T ss_pred ccChHHHHHHHHH--HHHhhhh-HHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh
Confidence 3456777777665 3444555 8888887777766543322211 1233345567899999999999999999999997
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (712)
.. .++. .+..|+.+|....+...|+..|.+.++. .|.....+..++.++..++++++|.++|
T Consensus 252 q~------~~~d----TfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 252 QF------PHPD----TFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred cC------Cchh----HHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 63 3333 4888999999999999999999999988 5788888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453 (712)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 453 (712)
+.+++..+.+.. +...+|.-|+.-++.+-|+.+|++.+..- ......++++|.|++..++++-++.
T Consensus 314 k~vlk~~~~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 314 KLVLKLHPINVE--------AIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhcCCccce--------eeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHH
Confidence 999988755432 45567888999999999999999887532 2335678999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
.|++|+....+ ....+.+|++||.+....|++.-|..+|+-++.. ++....++++||.+-.+.|+.
T Consensus 380 sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---------d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 380 SFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---------DAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc---------CcchHHHHHhHHHHHhhcCch
Confidence 99999988543 4566889999999999999999999999988876 455688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 005145 534 EQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 534 ~~A~~~~~~al~~~~~~~ 551 (712)
++|..++..|-...+...
T Consensus 446 ~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHHHHHHHhhhhCcccc
Confidence 999999999988877664
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.79 E-value=1.4e-15 Score=173.16 Aligned_cols=405 Identities=14% Similarity=0.048 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
.+......+...|+ +++|+++|....... ...++ ..+|..+..++...++++.|..++....... ..+
T Consensus 89 ~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~----~~~~~---~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~- 156 (697)
T PLN03081 89 SLCSQIEKLVACGR-HREALELFEILEAGC----PFTLP---ASTYDALVEACIALKSIRCVKAVYWHVESSG---FEP- 156 (697)
T ss_pred eHHHHHHHHHcCCC-HHHHHHHHHHHHhcC----CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc-
Confidence 34555666778886 999999998765321 01122 3467778888899999999999998876542 111
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
...++..+...|...|+++.|...|++..+ | ...+|..+...|...|++++|+.+|++++.....
T Consensus 157 ----~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 157 ----DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred ----chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 233588899999999999999999987532 2 2357888999999999999999999998753211
Q ss_pred cCCC------------CC----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005145 383 NGSP------------AS----------------LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434 (712)
Q Consensus 383 ~~~~------------~~----------------~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (712)
.... .. .....++..+...|...|++++|...|+... .....+
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt 292 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVA 292 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhH
Confidence 0000 00 0011245667788899999999999887542 123467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
|+.+...|...|++++|+.+|++.... + -.| ...++..+...+...|++++|.+++..+++..-.
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-------- 357 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-------- 357 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC--------
Confidence 888999999999999999999887653 1 022 3457888899999999999999999988876211
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
....++..|...|.+.|++++|...|++..+ ++ ..+|..+...|.+.|+.++|+++|++.... +-
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d--------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~- 422 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN--------LISWNALIAGYGNHGRGTKAVEMFERMIAE----GV- 422 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC--------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-
Confidence 1245678899999999999999999987642 11 246888999999999999999999997653 21
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh
Q 005145 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD 667 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~ 667 (712)
.+. ..++..+..++...|++++|..+|+...+. .+ ..| ....|..+..+|.+.|+ .+.. ...|+
T Consensus 423 ~Pd--~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 423 APN--HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HR-IKP-RAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred CCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cC-CCC-CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 222 367888889999999999999999988753 11 123 33468888999999998 2222 23343
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc-CC
Q 005145 668 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VN 704 (712)
Q Consensus 668 ~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~-i~ 704 (712)
..+|..|...+...|+++.|. ..++++++..|+ +.
T Consensus 494 -~~~~~~Ll~a~~~~g~~~~a~-~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 494 -VNMWAALLTACRIHKNLELGR-LAAEKLYGMGPEKLN 529 (697)
T ss_pred -HHHHHHHHHHHHHcCCcHHHH-HHHHHHhCCCCCCCc
Confidence 456899999999999999999 999999998887 53
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=7e-18 Score=158.22 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=234.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005145 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV--GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394 (712)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 394 (712)
+|+...+...|-......+++............ .+-...+|.||+.+|-+.+|.+.++.++...+-. .+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------dT 258 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------DT 258 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---------hH
Confidence 445556666666666666555443222222222 2233568999999999999999999999766432 37
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 005145 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (712)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (712)
+..|+.+|....+...|+..|.+.+ +..|.....+..++.++..++++++|.++|+.+++. ++..+
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gl------d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv 324 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGL------DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV 324 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhh------hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence 8899999999999999999999887 466777888999999999999999999999999998 88888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC
Q 005145 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (712)
.+...+|.-|+..++.+-|+.+|++.+.+ |... ...+.++|.|++..++++-++..|++|+....+ +
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~----~ 391 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQM------GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ----P 391 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHh------cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC----c
Confidence 99999999999999999999999999999 3334 456999999999999999999999999987643 3
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005145 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
...+.+|+++|.+....|++.-|..+|+-++. +.+..+.++++||.+-.+.|+.++|..++..|-..
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~----- 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV----- 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence 45578999999999999999999999998876 34456789999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 005145 635 GPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 635 ~~~~p~~~~~~~~La~~ 651 (712)
.|+..+..+||+.+
T Consensus 459 ---~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 ---MPDMAEVTTNLQFM 472 (478)
T ss_pred ---CccccccccceeEE
Confidence 88877777777643
No 48
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.78 E-value=1.8e-14 Score=170.42 Aligned_cols=405 Identities=15% Similarity=0.068 Sum_probs=284.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
....+...+..+...|+ +.+|+..+..+- +.......+...+..+...|++..+..++..+ ....
T Consensus 340 ~~~lh~raa~~~~~~g~-~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~--- 404 (903)
T PRK04841 340 LPELHRAAAEAWLAQGF-PSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEV--- 404 (903)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHH---
Confidence 34555556666666775 777776554431 11334555666788888889998877777654 1110
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
...++. .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++.
T Consensus 405 ~~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 480 (903)
T PRK04841 405 LLENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480 (903)
T ss_pred HhcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 112222 2456778888999999999999988766432110111 12345556688899999999999999999987
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
..+.. .......++..+|.++...|++++|..++.+++......+.......++..+|.++...|++++|..+++++
T Consensus 481 ~~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 481 ELPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred cCCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 53221 223344567889999999999999999999999888776666666778899999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005145 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
+.+.....+...+.....+..+|.++...|++++|...+.+++.+..... ......++..+|.++...|++++|..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988765443444455677889999999999999999999999876531 22346677889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHH
Q 005145 539 LLQKALKIYNDAPGQQST-VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 617 (712)
.+.++..+.... +.... ...........+...|+.+.|..++...... ...........+..+|.++...|+++
T Consensus 634 ~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 634 YLNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHH
Confidence 999998876653 21111 1111111234455678999988887665431 01111112234567899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+|..++++++...+.... ....+.++..+|.+|...|+
T Consensus 709 ~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 709 EAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCC
Confidence 999999999998544321 23445556666666666665
No 49
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.77 E-value=6.4e-15 Score=174.23 Aligned_cols=411 Identities=13% Similarity=-0.003 Sum_probs=289.6
Q ss_pred ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC 276 (712)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~ 276 (712)
+...|.+..++ .+.....+.+.....+...+..+...|+ +..+..++... .... ...++. .....+.++.
T Consensus 351 ~~~~g~~~~Al-~~a~~a~d~~~~~~ll~~~a~~l~~~g~-~~~l~~~l~~l-p~~~----~~~~~~---l~~~~a~~~~ 420 (903)
T PRK04841 351 WLAQGFPSEAI-HHALAAGDAQLLRDILLQHGWSLFNQGE-LSLLEECLNAL-PWEV----LLENPR---LVLLQAWLAQ 420 (903)
T ss_pred HHHCCCHHHHH-HHHHHCCCHHHHHHHHHHhHHHHHhcCC-hHHHHHHHHhC-CHHH----HhcCcc---hHHHHHHHHH
Confidence 44455555444 2222334445556667777777888876 77655554432 1110 011122 3345688888
Q ss_pred HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005145 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356 (712)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 356 (712)
..|++++|..++..+............+.....+...++.++...|++++|..++++++..... .+......++..+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l 497 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVL 497 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence 9999999999999887654221111122223445667889999999999999999999875211 1112244567889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--ChhHHHH
Q 005145 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ--DAEVASV 434 (712)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 434 (712)
|.++...|++++|..++++++......+.. .....++..+|.++...|++++|..++.+++......+. .+....+
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVY--HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 999999999999999999999988766532 333557788999999999999999999999988766432 2334455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+..+|.++...|++++|...+.+++.+..... ......++..+|.++...|++++|...+.++..+.... +....
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--~~~~~ 650 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--RYHSD 650 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccHh
Confidence 67889999999999999999999999876543 23456677889999999999999999999999886552 11111
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
............+...|+.+.|..++...... .. +........+..++.++...|++++|...+++++...+..+..
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 11111111234556688999998887665431 11 1111222345678999999999999999999999987776643
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
...+.++..+|.++...|+.++|..++.+|+++...
T Consensus 728 --~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 728 --SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 345678889999999999999999999999998643
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.75 E-value=2.5e-15 Score=142.12 Aligned_cols=324 Identities=15% Similarity=0.134 Sum_probs=250.8
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005145 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
...+|..+.-.+.+|..++..|+ +..|+..|..|++.. |....+++..|.+|..+|+-.-|+.-+.++++
T Consensus 31 ~~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~d---------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGD---------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCC---------chhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34567888899999999999997 999999999998643 66788899999999999999999999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHHhCCH
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-------DPRVGETCRYLAEAHVQALQF 366 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~ 366 (712)
+. ++ ...+....|.++..+|.+++|..-|.+++.......... .......+......++..|++
T Consensus 101 lK-----pD----F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 101 LK-----PD----FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred cC-----cc----HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 86 33 334578899999999999999999999987621100000 001122333445556678899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 005145 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (712)
Q Consensus 367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (712)
..|+.+....+++. ++.+..+...+.+|...|+...|+.-+..+.+ ...+....++.++.+++..|
T Consensus 172 ~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask------Ls~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASK------LSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred hhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh------ccccchHHHHHHHHHHHhhh
Confidence 99999999999876 34466788899999999999999999988763 34455678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005145 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL---------ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (712)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (712)
+.+.++...++++++ .++|......|-.| +.-....++|.++++..++.++.-.. ..+...
T Consensus 238 d~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~-----~~~ir~ 307 (504)
T KOG0624|consen 238 DAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE-----ETMIRY 307 (504)
T ss_pred hHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc-----ccceee
Confidence 999999999999998 22222222222222 23345667888888888887766322 123344
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.....+..|+...|++-+|+..+.+++.+.++. +.++...+.+|+....|+.|+.-|++|.+.
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-------v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-------VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 556678889999999999999999999886654 578999999999999999999999999885
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-14 Score=139.59 Aligned_cols=415 Identities=12% Similarity=0.028 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN-----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ 289 (712)
..++..+....+.... |..|...|..++..-..... ..+.+.....-+..+.||...++-+.|+..+.
T Consensus 43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~ 121 (564)
T KOG1174|consen 43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL 121 (564)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence 3344444444444433 66666666666654321110 11223345556678999999999999999887
Q ss_pred HhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------HhC
Q 005145 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ--------------------------VLG 343 (712)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~ 343 (712)
...... ..|. ....++..+..-++..++.-.|...+.-+.- ...
T Consensus 122 ~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 122 QVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence 765432 1111 2344555555555544444444333222110 001
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
+..+....-...+|.++....-+..+..++-.-...++.+ ...+..+|.+++..|++++|+..|+++.
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~---- 259 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTL---- 259 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHh----
Confidence 1112221122233444443334444444444333333322 3467889999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
-.+|......-..|.++...|+++.-..+....+.+ ....+.-|+.-+.+++..+++..|+.+-+++++.
T Consensus 260 --~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 260 --CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred --hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 356777777778899999999999888887777776 3344556777788889999999999999999998
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (712)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (712)
- +....++...|.++...|+.++|+-.|+.|..+.+-. ..+|..|-.+|...|.+.+|.-....
T Consensus 330 ~---------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 330 E---------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred C---------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 3 3346778899999999999999999999999887654 36899999999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----
Q 005145 584 AISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---- 657 (712)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~lg-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---- 657 (712)
++..+.. .+.++..+| .++. .----++|..++++++.+ .|....+...+|.++...|+
T Consensus 394 ~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 394 TIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH
Confidence 8887532 346666675 4433 223458999999999999 99999999999999999888
Q ss_pred ---hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 658 ---EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 658 ---~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.+......|++ .....||.++...+.+.+|. ..|..+|..+|+
T Consensus 458 i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence 34444555554 35789999999999999999 999999999997
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.75 E-value=4.6e-15 Score=141.36 Aligned_cols=344 Identities=16% Similarity=0.121 Sum_probs=277.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
..-|.-++...++++|+..+.+.+.... +...++..+-.+..+...+|.|++++.+--..+..+... ++...
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~------~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~ 81 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLS------DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDF 81 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHH------HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3446667788889999998888887642 223356678888899999999999998877777766553 22345
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
...++.+++..+....++.+++.+....+.+-..... ... ......+|..+..++.|+++++.|+.|+.+....++.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-QLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-ccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 6788999999999999999999998877765322221 111 2356678999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.....++..+|.+|....|+++|+-+..+|.++.....-.+ ......+++.++..+..+|+.-.|.++++++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999988765332 2235667889999999999999999999999999877
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHHH
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDSF 581 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 581 (712)
..+.+..+..+.-+|.+|...|+.+.|..-|+.|....... |+.-....++...+.++....-..+ |+++-
T Consensus 239 ---~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 239 ---HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred ---hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 34567778899999999999999999999999999988776 6655555666677777666554444 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+++++++..+|.+.. +...+..++.+|..+|.-++-.+.+.++-+.
T Consensus 315 ~r~levA~~IG~K~~--vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 315 TRLLEVASSIGAKLS--VLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHhhhhHH--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 999999999987753 4578899999999999888888887776654
No 53
>PLN03077 Protein ECB2; Provisional
Probab=99.74 E-value=5e-15 Score=172.88 Aligned_cols=427 Identities=13% Similarity=0.034 Sum_probs=243.4
Q ss_pred CCcccccccccccCccccccCCC-CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005145 194 ATPMKKRKGKLHKGQDVSEAGLD-KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (712)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la 272 (712)
...+...|.+.+|...+...... .+.....+..+...+...+. +..|...+..+++.. ...+ ......+-
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~---~~~~n~li 128 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSRALSSH-----PSLG---VRLGNAML 128 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC-HHHHHHHHHHHHHcC-----CCCC---chHHHHHH
Confidence 34456667776666444433221 23334445555556666665 888888888777542 1111 23445566
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK------------- 339 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------- 339 (712)
..|.+.|+.+.|...|++...- ...+|..+...|...|++++|+..|.+.....-
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~------------d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPER------------DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCC------------CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 7788999999999999876431 122488888999999999999999988754200
Q ss_pred ---------------HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005145 340 ---------------QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (712)
Q Consensus 340 ---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~ 404 (712)
............++..|...|.+.|++++|..+|++... ++ ..+|+.+...|..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d----~~s~n~li~~~~~ 265 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RD----CISWNAMISGYFE 265 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CC----cchhHHHHHHHHh
Confidence 000000001123456677788888888888888877532 11 2367788888888
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005145 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
.|++++|+..|.+.... +..|+ ..++..+...+...|+.+.|.+++..+... .......++..|...|
T Consensus 266 ~g~~~eAl~lf~~M~~~----g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 266 NGECLEGLELFFTMREL----SVDPD-LMTITSVISACELLGDERLGREMHGYVVKT-------GFAVDVSVCNSLIQMY 333 (857)
T ss_pred CCCHHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCccchHHHHHHHHHH
Confidence 88888888888776431 22222 123333334444445555554444444332 0111233444444444
Q ss_pred HHcCCHHH-------------------------------HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 485 NRTGKLRE-------------------------------SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 485 ~~~g~~~~-------------------------------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
.+.|++++ |+.+|++.....- .|+ ..++..+-..+...|++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-------~Pd-~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-------SPD-EITIASVLSACACLGDL 405 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------CCC-ceeHHHHHHHHhccchH
Confidence 44454444 4444444433210 011 11233333344444555
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005145 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR 613 (712)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 613 (712)
++|.+++..+.+. |..+. ..++..|...|.+.|++++|.+.|++..+ .+ ..+|..+...|.+.
T Consensus 406 ~~a~~l~~~~~~~-----g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~vs~~~mi~~~~~~ 468 (857)
T PLN03077 406 DVGVKLHELAERK-----GLISY-VVVANALIEMYSKCKCIDKALEVFHNIPE-------KD----VISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHHHHHHh-----CCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------CC----eeeHHHHHHHHHHC
Confidence 5555544444332 11111 23556677788888888888887776421 11 24678888888889
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHH----------------------------------HHHHHHHHHHHccc--
Q 005145 614 YSINEAVELFEEARSILEQECGPYHPDTLG----------------------------------VYSNLAGTYDAIGR-- 657 (712)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~----------------------------------~~~~La~~~~~~g~-- 657 (712)
|++++|+.+|++.+.- . .|+... ++..|...|.+.|+
T Consensus 469 g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 469 NRCFEALIFFRQMLLT----L---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred CCHHHHHHHHHHHHhC----C---CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 9999999988887531 1 232221 11223355555665
Q ss_pred --hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005145 658 --EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 658 --~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
.+.+... +.+..+|..+...|.+.|+.++|. +.|+++.+
T Consensus 542 ~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~-~lf~~M~~ 582 (857)
T PLN03077 542 YAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAV-ELFNRMVE 582 (857)
T ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 2222222 344557788888888888888888 88887765
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.2e-17 Score=166.43 Aligned_cols=266 Identities=20% Similarity=0.161 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
.+|.+++..|++++|++++.+.+.... ++.+ ...|..+|.+....++++.|+..|++++.. ++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---cccc----cccccccccccccccccccccccccccccc--------cccc
Confidence 569999999999999999976654320 1222 235888999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
...+..++.+ ...+++++|..++.++.+..+.. ..+..+..++...++++++...+.++.. ....+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~ 143 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP 143 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence 5566677777 78999999999998887654321 1355667788999999999999988653 12234
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005145 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
.....+..+|.++...|++++|+..|+++++. .|....+...++.++...|+++++...+.........
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--- 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD--- 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence 56778899999999999999999999999999 8888889999999999999999998888888777422
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|..++.+++...
T Consensus 213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 23357788999999999999999999999876554 3577899999999999999999999988754
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=9.1e-17 Score=161.91 Aligned_cols=267 Identities=21% Similarity=0.213 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
..+|.++...|++++|+..+.+.+.... +|.....|..+|.+....++++.|+..|++++...+...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------- 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc-------
Confidence 4679999999999999999977654421 245667888899999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
..+..++.+ ...+++++|+.++.++.... .....+..+..++...++++++...+.++... ...+
T Consensus 79 -~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~ 143 (280)
T PF13429_consen 79 -QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAP 143 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T---
T ss_pred -ccccccccc-cccccccccccccccccccc-------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCC
Confidence 245566666 68999999999998776321 12344555677889999999999999997753 1135
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
.....+..+|.++...|++++|+.+|++++++ .|....+...++.++...|+++++...+.......+..+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL---------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 66788999999999999999999999999999 444566788899999999999999998888877765442
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
..+..+|.+|..+|++++|+.+|++++.. .+....++..+|.++...|+.++|..++++++...
T Consensus 215 -------~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 215 -------DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp -------CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred -------HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 25667899999999999999999999875 23334788899999999999999999999988753
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.2e-14 Score=154.13 Aligned_cols=316 Identities=13% Similarity=0.048 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
+...+..|...+..|+ ++.|...+.++.+.. |.....+...|.++..+|+++.|..++.++.+..
T Consensus 84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~---------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA---------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 3455777888888987 999999988876542 2224455667999999999999999999987654
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (712)
++.. +.+....+.++...|+++.|...++..++. .|....++..++.++...|++++|.+.+.+.++..
T Consensus 149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 3321 123455699999999999999999999888 57777889999999999999999999998888652
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (712)
Q Consensus 381 ~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (712)
.. + .............-+...+..+++.+.+..+.... ....+.....+..++..+...|++++|+..++++++
T Consensus 218 ~~--~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 LF--D--DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred CC--C--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 11 1 11111111122222233344444445555554211 111123567788899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH--HHHHHHHHHHHHcccHHHH
Q 005145 461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA--SGLTDVSSIYESMNELEQA 536 (712)
Q Consensus 461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A 536 (712)
. .|+.... ...........++...++..++++++. +|..+ ..+..+|.++...|++++|
T Consensus 292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---------~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---------VDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHHHcccHHHH
Confidence 7 4433321 122233334458889999999999887 33334 7788999999999999999
Q ss_pred HHHHHH--HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005145 537 IKLLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 537 ~~~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
.++|++ +++..++. ..+..+|.++...|+.++|.++|++++...-.+++
T Consensus 355 ~~~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 355 ADAFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 999995 54443322 34568999999999999999999999887655443
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=2.3e-15 Score=165.69 Aligned_cols=263 Identities=10% Similarity=-0.032 Sum_probs=204.0
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CCHhHHHHHHHHhh
Q 005145 224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI 292 (712)
Q Consensus 224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~---------g~~~~A~~~~~~al 292 (712)
++..|...+... +.+++|+.+|++|+++. |..+.++..+|.+|... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444555444332 12678888888888653 55577788888887644 34899999999999
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (712)
++. |+++. ++..+|.++...|++++|+.+|++++++ +|....+++.+|.++...|++++|+.+
T Consensus 332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 55554 4888999999999999999999999999 788888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005145 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (712)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (712)
+++++++.+.... .+..++.+++..|++++|+..+++++.. .++.....+..+|.++..+|++++|.
T Consensus 395 ~~~Al~l~P~~~~--------~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 395 INECLKLDPTRAA--------AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHHHhcCCCChh--------hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999998765421 3344566677899999999999988632 23555667889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005145 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
..+.+.... .+....+...++..|...| +.|...+++.++..... ......++.+|.-.|+
T Consensus 462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence 999887665 6677778888999998888 48888888877765431 1112337788888888
Q ss_pred HHHHHHHHHHHHH
Q 005145 533 LEQAIKLLQKALK 545 (712)
Q Consensus 533 ~~~A~~~~~~al~ 545 (712)
.+.+..+ +++.+
T Consensus 523 ~~~~~~~-~~~~~ 534 (553)
T PRK12370 523 AIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHH-HHhhc
Confidence 8887776 55544
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.9e-14 Score=139.60 Aligned_cols=315 Identities=15% Similarity=0.075 Sum_probs=254.1
Q ss_pred HHHHHHHcCCHhHHHHHHHH--hhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 271 IAAIYCSLGQYNEAIPVLEQ--SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
.+.+.+..++...|...+-- -.... +++ ...+..+|.+++..|++++|+..|+++.-+ +|.
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~l-----r~N----vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy 264 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTL-----RCN----EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPD 264 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccC-----Ccc----HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------Chh
Confidence 34455555666665554432 22222 222 335889999999999999999999999888 788
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
.....-..|.++...|+++.-..+....+.+...... -|+.-+.+.+...++..|+.+-++++ ...
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--------~wfV~~~~l~~~K~~~rAL~~~eK~I------~~~ 330 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--------HWFVHAQLLYDEKKFERALNFVEKCI------DSE 330 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--------hhhhhhhhhhhhhhHHHHHHHHHHHh------ccC
Confidence 8899999999999999999888887777766543322 36667888889999999999999998 456
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+....++...|.++...|+.++|+-.|+.|..+ .|....+|..|..+|...|++.+|....+.++..+..
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-- 400 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-- 400 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc--
Confidence 667788899999999999999999999999998 8888999999999999999999999999999998655
Q ss_pred CCCCChhHHHHHHHHH-HHHH-HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 509 PGVPPEEIASGLTDVS-SIYE-SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
.+.++..+| .++. .----++|.+++++++.+.|.. ..+...++.++...|.++.++.++++++.
T Consensus 401 -------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 401 -------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-------TPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred -------chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-------HHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 466777775 4443 3334588999999999876544 34667899999999999999999999998
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+. ....+..||.++...+.+++|.++|..|+.+ +|..-.++..|-.+-....+
T Consensus 467 ~~~---------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 467 IFP---------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------DPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hcc---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHhccCC
Confidence 632 2367889999999999999999999999999 99888888777666554443
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.5e-14 Score=147.70 Aligned_cols=374 Identities=16% Similarity=0.081 Sum_probs=207.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005145 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (712)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 292 (712)
.+....+.-..++.-+..+...+- ++-|+..|..+|+.+ |..-..+...+..--.-|..+.-..+|++++
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvf---------p~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVF---------PCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444555555555555553 555555555555554 1112223333333344455555555666665
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (712)
... +..+. .|...+..+...|+...|...+.++++. +|..-.+|..--.+.+...+++.|..+
T Consensus 578 ~~~-----pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 578 EQC-----PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HhC-----Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 544 22211 2455555555566666666666666555 444445555555555555666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005145 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (712)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (712)
|.++....+. ..+|..-+.+...+++.++|+.+++++++ ..|.....|..+|+++..+++.+.|.
T Consensus 641 lakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 641 LAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 6665543211 12455555555566666666666666652 34445555666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005145 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
..|...+.. -|.....|..|+.+-...|..-.|...++++.-. +|.....|.....+-++.|+
T Consensus 706 ~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 706 EAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCC
Confidence 666655555 4555556666666666666666666666655443 23334445555555556666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005145 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~ 612 (712)
.+.|...+.+|++-++.. | ..|..-..+.-+-++-..+++.+++. . +. ..++..+|.++..
T Consensus 769 ~~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkc-------e--~d---phVllaia~lfw~ 829 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKC-------E--HD---PHVLLAIAKLFWS 829 (913)
T ss_pred HHHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhc-------c--CC---chhHHHHHHHHHH
Confidence 666666666666655544 1 11111111111222222222222221 1 11 2577888999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHH
Q 005145 613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEK 672 (712)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~ 672 (712)
..++++|.++|.+|+.+ +|+.-+++..+-..+...|. +.......|..-..|
T Consensus 830 e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 99999999999999999 89999999888888888885 334444455544444
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.71 E-value=4.2e-14 Score=134.87 Aligned_cols=346 Identities=15% Similarity=0.152 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
+......|..++...+ +.+|+..+.+.+.-.... ......|-.+..+...+|.|++++.+---.+.....
T Consensus 6 ~k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--- 75 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--- 75 (518)
T ss_pred hHHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence 3445667778888876 999999999888766443 334556667788889999999998877666655433
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (712)
.++......++.+++..+....++.+++.+-.-.+.+- +... ..-..+...++.++..++.|+++++.|+.|+.+
T Consensus 76 ~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 76 LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33334466789999999999999999998887776651 1111 122356677899999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAY 455 (712)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (712)
.....++ .....++..||.++....++++|+-+..+|..+....+.. .....+++.++..+..+|+.-.|.++.
T Consensus 152 A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C 229 (518)
T KOG1941|consen 152 AHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC 229 (518)
T ss_pred hhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 9888754 3345578899999999999999999999999888765522 234567889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH
Q 005145 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (712)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (712)
+++.++.-..+ +.+..+..+..+|.+|...|+.+.|..-|+.|..+.... .+......++...|.++....-..+
T Consensus 230 ~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~---gdrmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 230 EEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL---GDRMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred HHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999988876 478889999999999999999999999999999987764 2344456677777777776555555
Q ss_pred -----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 536 -----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 536 -----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
|+++-.+++++.... |.......+...++.+|..+|.-++-...+.++-+..
T Consensus 305 ~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 305 ICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred ccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999998887 8877778889999999999998888777777766543
No 61
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.71 E-value=8.5e-15 Score=156.16 Aligned_cols=423 Identities=16% Similarity=0.097 Sum_probs=297.8
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005145 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (712)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 287 (712)
..+..+...++..+.++..+|.+|....| ...|..+|++|.++. +..+.+...++..|....+++.|...
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44555566667777777777777766654 666777777666542 22344555567777777777777766
Q ss_pred HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHH
Q 005145 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (712)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (712)
.-.+-+... .......|..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++.
T Consensus 549 ~l~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 549 CLRAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCcee
Confidence 444333321 1122334667899999999999999999999988 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHcC
Q 005145 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLS 446 (712)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g 446 (712)
.|++.|.++..+.|.. ....+..+.+....|+|.+|+..+...+..... ..-....+.++..++..+...|
T Consensus 614 ~AlKvF~kAs~LrP~s--------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLS--------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred hHHHhhhhhHhcCcHh--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999998876543 235677888999999999999999887754432 1223456778888888888899
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----------------------cCCH------HHHHHHH
Q 005145 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-----------------------TGKL------RESKSYC 497 (712)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~ 497 (712)
-+.+|..+++++++.+.-............|..++....- ++.. --|.+++
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence 9999999999998876654322212222333333332211 1111 1122333
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005145 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (712)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (712)
-..+.+. ..+..|++||.-|+. +.+...|+.++.+++++..+.. ..|..||.+ -
T Consensus 766 ~~hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~-------~~WnaLGVl-s 827 (1238)
T KOG1127|consen 766 IAHLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE-------GLWNALGVL-S 827 (1238)
T ss_pred hHHHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH-------HHHHHHHHh-h
Confidence 3333321 124568888887776 2344589999999999987662 467777777 5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005145 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (712)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 649 (712)
..|++.-|..+|-+++.. .+.....|.++|.++.+..+++.|...|.++..+ +|.+...+...|
T Consensus 828 g~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~A 891 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEA 891 (1238)
T ss_pred ccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHH
Confidence 668888888888888764 2334567888888888888888888888888887 888888888888
Q ss_pred HHHHHccc--------------------------------------------------------hhhhCCCChhHHHHHH
Q 005145 650 GTYDAIGR--------------------------------------------------------EEKLGTANPDVDDEKR 673 (712)
Q Consensus 650 ~~~~~~g~--------------------------------------------------------~~~l~~~~p~~~~~~~ 673 (712)
.+....|+ ...+-..+|+...++.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 77777775 2333467888888899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Q 005145 674 RLAELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 674 ~la~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
..|.++..++.+++|. ....+++.
T Consensus 972 ~~gstlEhL~ey~~a~-ela~Rlig 995 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAAL-ELATRLIG 995 (1238)
T ss_pred HHHhHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999988 77666654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=4.4e-13 Score=137.72 Aligned_cols=423 Identities=16% Similarity=0.135 Sum_probs=209.6
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005145 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (712)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 294 (712)
..+|+.++.+...|..+...|+ -++|..+...++... +....|++.+|.++....+|++|+.+|+.|+.+
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~d---------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRND---------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HhCCccchhHHhccchhhcccc-hHHHHHHHHHHhccC---------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 3455555555555555555554 455555544444311 222334555555555555555555555555544
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005145 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ 374 (712)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (712)
. +++ ..+|..++.+..++++++.....-.+.+++ .|.....|...+..+...|++..|...++
T Consensus 105 ~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 105 E-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred C-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 221 123455555555555555544444444444 34444455555555555555555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 005145 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454 (712)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 454 (712)
...................+......+....|.+++|++++..-- +...+........|.++..++++++|...
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e------~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE------KQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh------hHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 544444322222333334444444455555555555555443221 11122223334455566666666666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH----HH---HHHH
Q 005145 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT----DV---SSIY 527 (712)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~l---a~~~ 527 (712)
|...+.. .|+....+..+-.++. .+....+..........+.++....|....... ++ -.-|
T Consensus 242 y~~Ll~r--------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 242 YRRLLER--------NPDNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHHHHhh--------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 6665555 5555555555544444 222222222222222222111111110000000 00 0000
Q ss_pred H----Hc-------------ccHHHHHHHHHHHHHHHHhCCC--------------CCCcHHHHHHHHHHHHHHcCCHHH
Q 005145 528 E----SM-------------NELEQAIKLLQKALKIYNDAPG--------------QQSTVAGIEAQMGVMYYMLGNYSD 576 (712)
Q Consensus 528 ~----~~-------------g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~ 576 (712)
. .. .+..+. .++++.+..+....+ .+..+.+.++.++.-+...|+++.
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 0 00 011111 133333322221111 223567788899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH--HHHHHHHH
Q 005145 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS--NLAGTYDA 654 (712)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~--~La~~~~~ 654 (712)
|..++..|+. +.|.+...+..-|+++...|++++|..++.++.++ + +++.+. .-|.-..+
T Consensus 390 A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D--~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 390 ALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------D--TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------c--chhHHHHHHHHHHHHH
Confidence 9999999987 45677788999999999999999999999999887 2 222222 23333333
Q ss_pred ccc----------hhhhCC---CCh-hHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005145 655 IGR----------EEKLGT---ANP-DVDDEKR--RLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 655 ~g~----------~~~l~~---~~p-~~~~~~~--~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
..+ +..-+. .+- +..-.|+ .=|..|.++|++-.|. +.+..+-....
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~~~ 513 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKHYK 513 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence 333 111111 011 1111233 3488999999999888 66665554443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=6e-15 Score=162.38 Aligned_cols=249 Identities=13% Similarity=0.030 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005145 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (712)
+.+++|+.+|++++ ..+|..+.++..+|.+|... +++++|+..+++++++ .|....+
T Consensus 275 ~~~~~A~~~~~~Al------~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCV------NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHH------hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 45789999999998 45677788888888877643 3489999999999998 8888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005145 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (712)
+..+|.++...|++++|+.+|++++++ .|..+.+++.+|.++...|++++|+..+++++++.+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 999999999999999999999999999 455577899999999999999999999999999866542
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
..+..++.+++..|++++|+..+++++... ++....++..+|.++..+|++++|...+++....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 233445666778999999999999987641 1223467888999999999999999999887665
Q ss_pred CChhhHHHHHHHHHHHHHccc-----hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005145 637 YHPDTLGVYSNLAGTYDAIGR-----EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 637 ~~p~~~~~~~~La~~~~~~g~-----~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
.|....+...++..|...|+ .+.+.........-...++.+|.-.|+.+.+. .. +++.+.+.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~ 537 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEK-MW-NKFKNEDN 537 (553)
T ss_pred -cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence 77778888899999888887 11121111111112334788899999988887 44 66655433
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=1.5e-14 Score=151.72 Aligned_cols=341 Identities=16% Similarity=0.107 Sum_probs=239.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005145 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (712)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (712)
.+|+.+..+..+|..+...|+ ++.|...+.++...... ...........+.++...|++++|...++++++..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAA------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 378999999999999999986 89988888877765522 12334556678999999999999999999999875
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (712)
|.+.. ++.. +..+...|++..+.....+++.. ....+|....++..+|.++...|++++|+..+++
T Consensus 74 -----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 74 -----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred -----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44432 2333 55666666666555555555543 2345677888888999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (712)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (712)
++++.+.. ..++..+|.++...|++++|+.++.+++..... ........+..+|.++...|++++|+..|
T Consensus 140 al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 140 ALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99987654 236888999999999999999999998754321 12233456778999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 456 QKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
++++.... ........ ...+...+...|....+..+ +.+........+. +.........+.++...|+.
T Consensus 210 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 210 DTHIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCH
Confidence 99864411 01111111 11223333444543333332 2222221111011 11222234688888999999
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005145 534 EQAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 534 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
++|...++......... .+.......+....+.++...|++++|...+..++.+...+|+.+-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~a 345 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHA 345 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 99999999988776552 0222233456678899999999999999999999999988887753
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=2.8e-14 Score=149.22 Aligned_cols=373 Identities=17% Similarity=0.122 Sum_probs=268.5
Q ss_pred ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 005145 201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280 (712)
Q Consensus 201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~ 280 (712)
|.|..+.+.|.+...-.-.....|..++..+...|. -..|+.+.+..+..-+ ..++....+..-..|+.+.+.
T Consensus 337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhh
Confidence 444455556666666666777888888888888887 5777777776654321 112234444445566778899
Q ss_pred HhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-----------QLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
+++++.+..+++.......+ .....++..+|.+|..+- ...+++..+++|++. +|..
T Consensus 410 ~eegldYA~kai~~~~~~~~----~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~d 477 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRS----HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTD 477 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhh----hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCC
Confidence 99999999999986532222 223345777787776532 234566667776666 4555
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
..+.++++.-|..+++.+.|..+.++++++.+... +.+|..++.++...+++.+|+....-++.....+-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--- 547 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--- 547 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh---
Confidence 68899999999999999999999999999854433 45899999999999999999999998885443210
Q ss_pred hHHHHHHHHHHHHHHcCCHH-------------------------------------------HHHHHHHHHHHHHHHhc
Q 005145 430 EVASVDCSIGDTYLSLSRYD-------------------------------------------EAGFAYQKALTAFKTNK 466 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~-------------------------------------------~A~~~~~~al~~~~~~~ 466 (712)
........+-...++.+ +|...++++..+.....
T Consensus 548 ---~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 548 ---VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred ---hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 11111111222233333 44444444443332110
Q ss_pred ----------------CCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005145 467 ----------------GENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528 (712)
Q Consensus 467 ----------------~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 528 (712)
++++ ......|...+..+...+..++|..++.++-.+ .+..+..|+..|.++.
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---------~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---------DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---------chhhHHHHHHhhHHHH
Confidence 0011 112345667788889999999999999999888 4557889999999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005145 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--SFKNAISKLRAIGERKSAFFGVALNQM 606 (712)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (712)
..|++.+|.+.|..|+.+.|+.+ .+...+|.++...|+..-|.. ++..++++ .+....+|+.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv-------~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~L 760 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHV-------PSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYL 760 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHH
Confidence 99999999999999999977653 467789999999999888887 89999886 34455899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 005145 607 GLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 607 g~~~~~~g~~~~A~~~~~~al~~ 629 (712)
|.++..+|+.++|.++|..|+++
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999998
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=8.1e-14 Score=146.23 Aligned_cols=338 Identities=11% Similarity=0.011 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 261 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
+|+.+.++..+|.++...|+++.|...+.++...... ... ........+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RAT-ERERAHVEALSAWIAGDLPKALALLEQLLDD--- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 3667889999999999999999998888888876532 111 2234667899999999999999999999987
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
+|....++.. +..+...|++..+.....+++... .+..+.....+..+|.++...|++++|+..+++++.
T Consensus 73 -----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 73 -----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred -----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555554 666666666666665555555441 223334455677889999999999999999999985
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
. .|....++..+|.++...|++++|+.++++++..... +.......+..+|.++...|++++|+.+|+++
T Consensus 143 ~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 L------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred h------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 3444677889999999999999999999999987321 12223456778999999999999999999998
Q ss_pred HHHHhcCCCCCCChhHHHH--HHHHHHHHHHcccHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 005145 501 LRIYEKPVPGVPPEEIASG--LTDVSSIYESMNELEQAIKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (712)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (712)
+..... ....... ...+...+...|....+..+ +.+....... .+ +.........+.++...|+.++|
T Consensus 213 ~~~~~~------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 213 IAPSAE------SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred hccccC------CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHH
Confidence 654211 1111111 11223333344433333322 2222222211 12 21112223678888899999999
Q ss_pred HHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 578 YDSFKNAISKLRAIG-ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 578 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
...++.......... .........+....+.++...|++++|++.+..++.+...+.|.
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 999998887765521 01112234567788899999999999999999999998777664
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=6.1e-13 Score=136.25 Aligned_cols=296 Identities=12% Similarity=0.005 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
...|...+.+-...|..++-..++++++...++... .|...+..++..|+...|...+.+++. ..|
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~------~~p 615 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFE------ANP 615 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHH------hCC
Confidence 334444444444444444444444554444443321 344445555555666666666655552 223
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005145 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
..-.++..--.+.+...+++.|..+|.++... .....+|..-+.+...+++.++|+.+++++++.+
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----- 681 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----- 681 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence 33344444445555566666666666665543 2234555566666666666666666666666663
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
|.....|..+|+++..+++.+.|...|...+..++... -.|..|+.+-.+.|+.-.|...++++.-.
T Consensus 682 ----p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-------pLWllLakleEk~~~~~rAR~ildrarlk-- 748 (913)
T KOG0495|consen 682 ----PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-------PLWLLLAKLEEKDGQLVRARSILDRARLK-- 748 (913)
T ss_pred ----CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-------hHHHHHHHHHHHhcchhhHHHHHHHHHhc--
Confidence 33455566666666666666666666666666555442 25556666666666666666666665431
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----hhhhCCCC
Q 005145 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----EEKLGTAN 665 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----~~~l~~~~ 665 (712)
.+.....|...-.+-.+.|+.++|..+..+|++- .|.....|..-..+.-.-++ ..++ ...
T Consensus 749 ------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--------cp~sg~LWaEaI~le~~~~rkTks~DAL-kkc 813 (913)
T KOG0495|consen 749 ------NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--------CPSSGLLWAEAIWLEPRPQRKTKSIDAL-KKC 813 (913)
T ss_pred ------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccchhHHHHHHhccCcccchHHHHHH-Hhc
Confidence 1222344544555556667777777776666664 33322222111111111111 1111 111
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 666 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 666 p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
..++.++..+|.++....++++|. ..|+++++..|+
T Consensus 814 e~dphVllaia~lfw~e~k~~kar-~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAR-EWFERAVKKDPD 849 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHccCCc
Confidence 223344566677777777777777 777777777665
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1e-14 Score=147.17 Aligned_cols=221 Identities=18% Similarity=0.088 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005145 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (712)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (712)
.+.++..+.+++... .......+..++.+|.+|...|++++|+..|++++++. |+++. +++.+|.+
T Consensus 42 ~e~~i~~~~~~l~~~-----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~----a~~~lg~~ 107 (296)
T PRK11189 42 QEVILARLNQILASR-----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMAD----AYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHccc-----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHH----HHHHHHHH
Confidence 577777777777532 12234557889999999999999999999999999986 55543 59999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005145 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (712)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (712)
+...|++++|+..|++++++ +|....++.++|.++...|++++|+..+++++.+.+... . ...
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~ 170 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL 170 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence 99999999999999999998 688889999999999999999999999999998765432 1 111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHhcCCCCHHHH
Q 005145 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF---KTNKGENHPAVA 474 (712)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~ 474 (712)
...+....+++++|+..|.+++.. .++.. + ..+.++...|++..+ ..+..+.+.. .+. .+...
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~~ 236 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEK-----LDKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERLC 236 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhh-----CCccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHHH
Confidence 122345678999999999776521 11111 1 134555567776544 2333333211 111 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.+|+.+|.++...|++++|+.+|++++.+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999988
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=7.2e-14 Score=148.19 Aligned_cols=315 Identities=14% Similarity=0.062 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+......|.+....|+++.|.+.+.++.+.. +.... .+...|.++..+|+++.|..++.++.+.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-----~~~~~----~~llaA~aa~~~g~~~~A~~~l~~a~~~------- 147 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-----AEPVL----NLIKAAEAAQQRGDEARANQHLEEAAEL------- 147 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3344556888899999999999999987764 32222 3667899999999999999999999776
Q ss_pred CChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 345 TDPRVG-ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 345 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
.|... .+....+.++...|+++.|...+++.++..|+.. .++..++.++...|++++|++.+.+..+..
T Consensus 148 -~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~- 217 (409)
T TIGR00540 148 -AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAG- 217 (409)
T ss_pred -CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence 23322 2344569999999999999999999998875543 378899999999999999999998776431
Q ss_pred hCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 424 ANDQDAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 424 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
...+. ..........-+...+..+++...+.++...... ..+.....+..++..+...|++++|...++++++
T Consensus 218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 11222 2122222222223444445555566666654111 1224678899999999999999999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
.... ..... ............++.+.+++.++++++..++.+ . ..++..+|+++++.|++++|.++|+
T Consensus 292 ~~pd------~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~----~-~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 292 KLGD------DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP----K-CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred hCCC------cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh----h-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 8432 21111 012233333446788899999999887655431 1 2467789999999999999999999
Q ss_pred H--HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 583 N--AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 583 ~--al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
+ +++. .+. . ..+..+|.++.+.|+.++|.++|++++...-.
T Consensus 360 ~a~a~~~-------~p~-~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 360 NVAACKE-------QLD-A-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HhHHhhc-------CCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5 4443 111 1 34558999999999999999999999887533
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.9e-13 Score=128.91 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=188.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005145 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK 307 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 307 (712)
|.-++...+ +++|++.|.+.++. ++....+...||..|.+.|..+.|+.+-+..+.-. .-.....
T Consensus 42 GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~qr 106 (389)
T COG2956 42 GLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQR 106 (389)
T ss_pred HHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHHH
Confidence 334444444 78888888877753 25567778888888888888888888877666542 1111224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005145 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
..++..||.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++...+.++. .
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---Y 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---c
Confidence 456788888888888888888888876654 22344577778888888888888888877776665443 4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005145 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
....+..|..++..+....+++.|+..+.+|+. .++..+.+-..+|.++...|+|..|++.++.+++-
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------ 243 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ------ 243 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence 466777788888888888888888888888873 45566667777888888888888888888887776
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
++.....+...|..+|...|+.++.+.++.++.+.... ..+...++.+-....-.+.|..++.+-+...
T Consensus 244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRRK 312 (389)
T ss_pred -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC
Confidence 34445667777888888888888888888887776433 2233445555555555666666666555443
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=7.5e-15 Score=132.42 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
....+...||.-|...|++..|...+++|++. +|....+|..+|.+|...|+.+.|.+.|++|+.+.++.++
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence 35567899999999999999999999999999 8999999999999999999999999999999999988865
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
++++.|..++.+|++++|..+|++|+. .+.-+..+.++.++|.|..+.|+++.|..+|++++++
T Consensus 105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---- 168 (250)
T COG3063 105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---- 168 (250)
T ss_pred --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence 799999999999999999999999973 2445567889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.|........++..++..|+|..|..+++....... ..+..+.....+-...|+-+.|-.+-.+...
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888999999999999999999999998776632 2466677777788889999888887776666
Q ss_pred HHHhC
Q 005145 546 IYNDA 550 (712)
Q Consensus 546 ~~~~~ 550 (712)
.+|..
T Consensus 236 ~fP~s 240 (250)
T COG3063 236 LFPYS 240 (250)
T ss_pred hCCCc
Confidence 65543
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=9.5e-15 Score=143.16 Aligned_cols=203 Identities=21% Similarity=0.190 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
....+..+|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.++++++...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Confidence 3456899999999999999999999999887 56777899999999999999999999999999875432
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005145 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (712)
...+..+|.++...|++++|+.+|.+++.. ...+.....+..+|.++...|++++|..++.+++..
T Consensus 99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 164 (234)
T TIGR02521 99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI----- 164 (234)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 236888999999999999999999999752 123344567888999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005145 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
.|.....+..+|.++...|++++|..++++++... +.....+..++.++...|+.++|..+.+.+...
T Consensus 165 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 165 ---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY---------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred ---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55567788999999999999999999999999882 112455668899999999999999988776554
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1.1e-14 Score=146.77 Aligned_cols=243 Identities=13% Similarity=0.025 Sum_probs=177.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005145 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (712)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (712)
+..+.++..+.+++...+. .....+..++.+|.+|...|++++|+..|.+++. ..|....+++.+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~----~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------l~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDL----TDEERAQLHYERGVLYDSLGLRALARNDFSQALA------LRPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccC----CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHH
Confidence 4567778888877754321 2234466899999999999999999999999984 46677889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005145 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (712)
..|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++... ++. ...|
T Consensus 110 ~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~------~~~-~~~~--- 171 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN------DPY-RALW--- 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH-HHHH---
Confidence 999999999999999998 8888899999999999999999999999999998322 221 1122
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005145 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (712)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (712)
..+....+++++|+..+.++...... . .+ ..+.++...|++.++ ..++.+...+.... ...+....+|
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~-----~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~ 239 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDK-----E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY 239 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCc-----c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence 22345578899999999886643211 1 11 134555567776554 24444432211000 0013356799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHH
Q 005145 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDA 654 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~ 654 (712)
+.+|.++...|++++|+.+|++|+.+ +| +.+...+.+..+...
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~--------~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALAN--------NVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 54 666655555544443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=9.9e-15 Score=131.65 Aligned_cols=202 Identities=16% Similarity=0.156 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
......+...||.-|+..|++..|..-+++|+++ .|....+|..+|.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 4456778999999999999999999999999999 5667889999999999999999999999999999887
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
. ..++++.|..++.+|++++|...|++|+. ++.-.....++.++|.|..+.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 6 36899999999999999999999999987 3333445689999999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+|+...+...++..+...|+ .+.+....+-.++.+.....+-...|+...|. ++=..+-...|.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~r~fP~ 239 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQRLFPY 239 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence 99999999999999999999 44444444566777878888889999999888 777777777876
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=6.6e-14 Score=147.63 Aligned_cols=306 Identities=13% Similarity=0.056 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
+...+..|...+..|+ +++|.....++-+. .+.| ...+...+.+....|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 3445677777888886 89888666654331 1122 2234444666699999999999999998764
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (712)
++.. .......+.++...|+++.|+..++++++. .|....++..++.+|...|++++|+.++.+..+..
T Consensus 149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 3322 122445589999999999999999999888 67778899999999999999999999998887654
Q ss_pred HhcCCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 381 KDNGSPASLE--EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 381 ~~~~~~~~~~--~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
.... .... ...++..+........+-+....+++..- ...+....+...++..+...|+.++|...++++
T Consensus 218 ~~~~--~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 218 VGDE--EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred CCCH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2211 0000 00122222222222222222222222211 112344667788899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005145 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
++. +.++... ...+. ...+++++++..+++.++. +|+.+..+..+|.++...+++++|..
T Consensus 290 l~~------~~~~~l~---~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 290 LKR------QYDERLV---LLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred Hhc------CCCHHHH---HHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 874 1133222 22222 2449999999999998877 45567789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
+|+++++..++. ..+..++.++...|+.++|..+|++++.+.
T Consensus 350 ~le~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 350 AFRAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999875543 356789999999999999999999998864
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-14 Score=141.17 Aligned_cols=296 Identities=14% Similarity=0.085 Sum_probs=228.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005145 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (712)
....|..++...+|.+|+..|..|+++. ++. +..|.+.+.++...|+|++|.-..++.+++ ++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--------kd 114 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDN----ASYYSNRAATLMMLGRFEEALGDARQSVRL--------KD 114 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccc----hhhhchhHHHHHHHHhHhhcccchhhheec--------CC
Confidence 3446778888999999999999999987 443 335889999999999999999999998888 56
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005145 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
.....+...+.++...++..+|...++..- .+ ....|+..+++. +.....
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~-----------~~anal~~~~~~---~~s~s~ 164 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY-----------KAANALPTLEKL---APSHSR 164 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh-----------HHhhhhhhhhcc---cccccC
Confidence 667788888888888888888887776110 01 111222222222 222233
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.|....+...-+.++...|++++|...--..+++ ++....++...|.+++..++.+.|+..|++++.+....
T Consensus 165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh 236 (486)
T KOG0550|consen 165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH 236 (486)
T ss_pred CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence 4555566667788888889999888887777777 77778888888888888899999999999988873321
Q ss_pred CC---CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 508 VP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (712)
Q Consensus 508 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (712)
.. ....+.....+..-|.-.++.|+|.+|.+.|..+|.+.|.. ....+.+|.+.+.+..++|+..+|+.-.+.|
T Consensus 237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 00 00122344566677888899999999999999999997753 3456788999999999999999999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+.+ .+.+..++...|.++..+++|++|.+.|++|++.
T Consensus 314 l~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 314 LKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 997 4557789999999999999999999999999987
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=2.4e-14 Score=140.23 Aligned_cols=205 Identities=16% Similarity=0.165 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
...+..+..+|.++...|++++|+..+++++... +... .++..+|.++...|++++|+..+++++..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-----PDDY----LAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3457788999999999999999999999998764 3332 35888999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
.|....++..+|.++...|++++|+.++++++..... ......+..+|.++...|++++|..++.+++..
T Consensus 95 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 ----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY------PQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred ----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556678999999999999999999999999874321 122346788999999999999999999999853
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
.+....++..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+.+.
T Consensus 165 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred ------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334567889999999999999999999999987 33345666788999999999999999887765
Q ss_pred HH
Q 005145 502 RI 503 (712)
Q Consensus 502 ~~ 503 (712)
..
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 54
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=4.1e-12 Score=130.71 Aligned_cols=388 Identities=13% Similarity=0.095 Sum_probs=251.0
Q ss_pred cccccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005145 186 GVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELV 265 (712)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 265 (712)
....+...+-.+..-|+..+|-+........++....+|..+|..+....+ |++|+.+|+.|+.+- ++..
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~-Y~eaiKcy~nAl~~~---------~dN~ 109 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK-YDEAIKCYRNALKIE---------KDNL 109 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh-HHHHHHHHHHHHhcC---------CCcH
Confidence 333344455556777777777655555667888999999999999888886 999999999999863 4457
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005145 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (712)
..+..++....++++++-....-.+.+++.+ . .-..|...+..+...|++..|....+........
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-----~----~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~----- 175 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRP-----S----QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT----- 175 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 7889999999999999999998888888762 2 2335899999999999999999998887766431
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
.+.....-......|..+-..+... ++++++....... ............|.++..++++++|...|...+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll------ 246 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL------ 246 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH------
Confidence 2333333333333443333333222 6777766655432 222333455567899999999999999998877
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHh-----------cCCCCHHHHHHHH-------------HH
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAG-FAYQKALTAFKTN-----------KGENHPAVASVFV-------------RL 480 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~-----------~~~~~~~~~~~~~-------------~l 480 (712)
...|+....+..+-.++..-.+--+++ ..|...-+.+... .+.+-+....-+. .+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 345666666665555554222222333 3333332221110 0001111111111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC------------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGV------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
-.+| .+... ..++++.+..+...+.+. .+....+.++.++.-+...|+++.|..+++.|+...
T Consensus 327 ~SLy---k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT- 401 (700)
T KOG1156|consen 327 RSLY---KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT- 401 (700)
T ss_pred HHHH---hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-
Confidence 1111 11111 124444444443333222 344567888899999999999999999999998654
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHHHhCCHHHHHHHHHHH
Q 005145 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN-QMGLACVQRYSINEAVELFEEA 626 (712)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~a 626 (712)
++....+...|+++...|++++|..++.++.++ +.+. .+.+ .-|....+.++.++|.+...+.
T Consensus 402 ------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-------D~aD--R~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 402 ------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-------DTAD--RAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred ------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cchh--HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 445678889999999999999999999999875 1121 2333 4667777888888888765543
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4.9e-13 Score=126.23 Aligned_cols=281 Identities=12% Similarity=0.094 Sum_probs=222.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
+..|.-+.-..+.++|++.|...++. +|...++...||.+|...|..+.|+.+.+..+... +......
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQR 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHH
Confidence 44566677788999999999998886 78899999999999999999999999887665421 1122344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
..++..||.-|+..|-+|.|...|.... +.......++..|..+|....+|++|++..++...+-.+. ...
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~------de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~ 177 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLV------DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV 177 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHh------cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence 5688899999999999999999998775 2344456678889999999999999999988877763332 256
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
..+..|..||..+....+++.|...+.+|++. ++....+-..+|.++...|+|++|++.++.+++..+..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y- 247 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY- 247 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-
Confidence 78889999999999999999999999999998 34456777889999999999999999999998865544
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 631 (712)
+..++..|..+|..+|+.++.+.++.++.+.... ..+...++.+-....-.+.|..++.+-+..
T Consensus 248 -----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 248 -----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 4568888999999999999999999998875211 134455666666666677888777776666
Q ss_pred HhcCCCChhhHHHH
Q 005145 632 QECGPYHPDTLGVY 645 (712)
Q Consensus 632 ~~~~~~~p~~~~~~ 645 (712)
+|.....+
T Consensus 312 ------~Pt~~gf~ 319 (389)
T COG2956 312 ------KPTMRGFH 319 (389)
T ss_pred ------CCcHHHHH
Confidence 88765433
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=8.7e-15 Score=148.61 Aligned_cols=269 Identities=16% Similarity=0.090 Sum_probs=200.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
..|..+++.|+..+|.-.|+.++... |. .+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~----haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQ----HAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----hH----HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 36999999999999999999998765 33 4557999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
..++..||..|...|.-.+|.+++.+-+...+.......... .-......-......+..-.++|..+. ...+. .
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~-~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPT-K 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCC-C
Confidence 999999999999999999999999988765432210000000 000000000000001112223333332 22221 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005145 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
..+.+...||.+|...|+|++|+.+|+.||.. .|.....|+.||..+....+..+|+..|.+|+++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------ 493 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------ 493 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence 44677889999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 005145 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS 577 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A 577 (712)
.|.+++++++||..+..+|.|++|.++|-.||.+.+...+... .--.+|..|-.++...++.+-+
T Consensus 494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6678999999999999999999999999999999887432221 1123444444555555655533
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=8.2e-13 Score=139.33 Aligned_cols=302 Identities=11% Similarity=0.075 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+...+.-|......|+|+.|.+.+.++.+. .+.|.. .+...+.+....|+++.|..+|.++.+.
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l---~~llaA~aA~~~g~~~~A~~~l~~A~~~------- 147 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV---NYLLAAEAAQQRGDEARANQHLERAAEL------- 147 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 444556788888899999999888775443 222322 2444566669999999999999999876
Q ss_pred CChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 345 TDPRVG-ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 345 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
+|... ......+.++...|++++|...+++..+..|++. .++..++.+|...|++++|+..+.+..+..
T Consensus 148 -~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~- 217 (398)
T PRK10747 148 -ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--------EVLRLAEQAYIRTGAWSSLLDILPSMAKAH- 217 (398)
T ss_pred -CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-
Confidence 33332 2333458999999999999999999988876553 378889999999999999999988775432
Q ss_pred hCCCChhHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 424 ANDQDAEVAS-----VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498 (712)
Q Consensus 424 ~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 498 (712)
...+.... ++..+........+-+....+++..-.. .+....+...++..+...|+.++|...++
T Consensus 218 --~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 218 --VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--------TRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--------HhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11222111 2222222222222223333333222221 34567788899999999999999999999
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 005145 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (712)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (712)
++++. . . ++.. ....+. ...++++++++.+++.++..++. ...+..+|.++...+++++|.
T Consensus 288 ~~l~~--~----~-~~~l---~~l~~~--l~~~~~~~al~~~e~~lk~~P~~-------~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 288 DGLKR--Q----Y-DERL---VLLIPR--LKTNNPEQLEKVLRQQIKQHGDT-------PLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHhc--C----C-CHHH---HHHHhh--ccCCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHH
Confidence 99874 1 1 2222 222222 24589999999999988766554 357888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005145 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
.+|+++++. .|. ...+..++.++.+.|+.++|..+|++++.+.
T Consensus 349 ~~le~al~~-------~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 349 LAFRAALKQ-------RPD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhc-------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999985 122 2456789999999999999999999998864
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.6e-14 Score=135.41 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=229.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+.-....|..++...+ |..|+..|..|+++. |+.+..|.+.+.+++..|+|++|.-..++.+++..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-- 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-- 114 (486)
T ss_pred HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence 445566778888899886 999999999999987 55588899999999999999999999999998862
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCC--CChhHHHHHHHHHHHHHHhCCHHH
Q 005145 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE 368 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 368 (712)
..+. .+...+.++...++..+|...++..- .....+... ..|....+...-+.|+...|++++
T Consensus 115 ---~~~k----~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 115 ---GFSK----GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred ---Cccc----cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 2222 36677888888888777776665211 111111111 125556666777899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHH
Q 005145 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTY 442 (712)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~ 442 (712)
|+..--..+++.... +.+++..|.++...++.+.|+.+|++++.+-... -..+.....+..-|.-.
T Consensus 188 a~~ea~~ilkld~~n--------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 188 AQSEAIDILKLDATN--------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred HHHHHHHHHhcccch--------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 999888777766443 4478888999999999999999999998542211 11234455667788999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005145 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (712)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (712)
++.|+|..|.+.|.++|.+-.. +...++..|.+.|.+..++|+..+|+.-++.++.+ .+....++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~ 326 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR 326 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence 9999999999999999998222 23356788999999999999999999999999999 6778999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 523 VSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|.++..+++|++|++.|+++++....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999987654
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.62 E-value=1.2e-12 Score=140.05 Aligned_cols=459 Identities=13% Similarity=0.016 Sum_probs=321.8
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
.++....+.+++.+++..+..+...+|....++..+|..|...|+ |..|+..|.+|..+. |......+..
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~Lr---------P~s~y~~fk~ 636 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLR---------PLSKYGRFKE 636 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcC---------cHhHHHHHHH
Confidence 356667788888999999999999999999999999999999998 999999999997653 4555666778
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
+.+.+..|+|.+|+..+...+........... ..+.++.+++..+...|-+.+|..+++++++.+.-.+....-....
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~--gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQN--GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999988876532211111 1345677888888888989999999999988876544332112222
Q ss_pred HHHHHHHHHHHhCCH-----------------------------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005145 352 TCRYLAEAHVQALQF-----------------------------SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (712)
Q Consensus 352 ~~~~la~~~~~~g~~-----------------------------~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~ 402 (712)
.|..++..+...-.. --|.+++-..+.+... ...|+++|.-|
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~---------~~~WyNLGiny 785 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH---------MYPWYNLGINY 785 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc---------cchHHHHhHHH
Confidence 333333322211111 1122222222222211 33577788777
Q ss_pred HH--------cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 005145 403 ET--------KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (712)
Q Consensus 403 ~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (712)
+. +.+...|+.++.+++.+.. .....++.||.+ ...|.+.-|..+|-+++.. .|...
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~a------nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~ 850 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCA------NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCH 850 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhh------ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccch
Confidence 65 2233578899998886432 234567777776 6668999999999999887 78888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC
Q 005145 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (712)
..|.++|.++....+++-|...|.++..+ .|.....|...+.+....|+.-++...|.....+.... +..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSL---------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka 920 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSL---------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKA 920 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhc---------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-ccc
Confidence 99999999999999999999999999888 56677889999999999999999999988866655433 222
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL---RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 631 (712)
... ..+..--......|++++-+...+++-... ..... .++....++...|.....++.+..|.+.+.+.+.+++
T Consensus 921 ~~f-~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe 998 (1238)
T KOG1127|consen 921 KKF-QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE 998 (1238)
T ss_pred chh-hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 234444556667788887776665543221 11112 2355678999999999999999999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHccchhhh----CCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005145 632 QECGPYHPDTLGVYSNLAGTYDAIGREEKL----GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 632 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~l----~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
..+.....++ +--++|+++...|..+.. ....-+..+-........+-.|+++++. +.|++++....
T Consensus 999 ~k~d~sqynv--ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl-~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 999 LKLDESQYNV--AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSL-EFFEQALSISN 1069 (1238)
T ss_pred HHHhhhhhhh--hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHH-HHHHHHhhhcc
Confidence 8877543333 556778888888882222 1222222222333444447789999999 99999887544
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.8e-11 Score=124.67 Aligned_cols=415 Identities=13% Similarity=0.110 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005145 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (712)
..++.--..+...++ |++|.....+.+... |+...+++.--.++...++|++|+.+.+.-.... .
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V 77 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence 445555556677776 999999888888653 3335566667788889999999997666543321 0
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (712)
.+ ...+..+.|.++++..++|+..+.-+ ++....++...|.+++++|+|++|...|+..++-..
T Consensus 78 ~~-----~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 78 IN-----SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cc-----hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 11 11368899999999999999998821 222344667789999999999999999998765432
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (712)
Q Consensus 382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (712)
...+ .-.-.+.++..-...+++ ...... .......+++.|.++...|+|.+|++.+++|+.
T Consensus 142 dd~d-----~~~r~nl~a~~a~l~~~~-------------~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQD-----EERRANLLAVAAALQVQL-------------LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHH-----HHHHHHHHHHHHhhhHHH-------------HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2211 111111222211111111 111122 233567789999999999999999999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc--
Q 005145 461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-- 531 (712)
Q Consensus 461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 531 (712)
++++....++ .....+...|+.++..+|+..+|...|...+..... +.+..+.+-++|-.+-....
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence 9887654332 235567889999999999999999999888875322 12223333333322111110
Q ss_pred ------------------------------------cHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 005145 532 ------------------------------------ELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY 574 (712)
Q Consensus 532 ------------------------------------~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 574 (712)
-+.-...-..++.++....++..+ ....++..-+ ...+...+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~-t~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEA-TKVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHH-HHHHHHHH
Confidence 000001111122222333333322 1111211111 11111134
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHH
Q 005145 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--YHPDTLGVYSNLAGTY 652 (712)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~ 652 (712)
.+|..++.. ..+.++.....+...++++...+|+++.|++.+...+..+...+.. ..|..+. .+-.+|
T Consensus 358 ~ka~e~L~~-------~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~---aiv~l~ 427 (652)
T KOG2376|consen 358 KKAIELLLQ-------FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG---AIVALY 427 (652)
T ss_pred hhhHHHHHH-------HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH---HHHHHH
Confidence 444444433 3344444445688889999999999999999999666444433332 2343332 222333
Q ss_pred HHccc--------------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 653 DAIGR--------------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 653 ~~~g~--------------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
...++ ...-....+.....+..++.+-.+.|+-++|. ..|+++++.+|.
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~ 490 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN 490 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence 33333 22222344555666778888888899999999 999999998886
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=3.8e-14 Score=144.04 Aligned_cols=266 Identities=16% Similarity=0.137 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccc
Q 005145 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (712)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (712)
-+..|..+++.|+ ..+|.-.|+.|++. +|..+.++..||.+....++-..|+..+++++++. +.+
T Consensus 288 Pf~eG~~lm~nG~-L~~A~LafEAAVkq---------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-----P~N 352 (579)
T KOG1125|consen 288 PFKEGCNLMKNGD-LSEAALAFEAAVKQ---------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-----PTN 352 (579)
T ss_pred hHHHHHHHHhcCC-chHHHHHHHHHHhh---------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-----Ccc
Confidence 3678999999998 99999999999864 38889999999999999999999999999999997 443
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH-------HHHHHHHHhCCHHHHHHHHHHH
Q 005145 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR-------YLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 304 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~a 376 (712)
..++..||..|...|.-.+|+.++.+-+... |.....-. ....-......+..-.++|..+
T Consensus 353 ----leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--------p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea 420 (579)
T KOG1125|consen 353 ----LEALMALAVSYTNEGLQNQALKMLDKWIRNK--------PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA 420 (579)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHH
Confidence 4469999999999999999999999987762 11110000 0000000011122233344444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
....+...+ ..++..||.+|...|+|++|+.+|+.|+ ...|.....|+.||-.+..-.+..+|+..|+
T Consensus 421 a~~~~~~~D------pdvQ~~LGVLy~ls~efdraiDcf~~AL------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 421 ARQLPTKID------PDVQSGLGVLYNLSGEFDRAVDCFEAAL------QVKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHhCCCCCC------hhHHhhhHHHHhcchHHHHHHHHHHHHH------hcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 333332111 3368899999999999999999999998 5788889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHHHHHHHcccHHH
Q 005145 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYESMNELEQ 535 (712)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 535 (712)
+|+++ .|..++++++||..++.+|.|++|.++|-.||.+.++.......+. .-.+|..|-.++..+++.+-
T Consensus 489 rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 489 RALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 99999 9999999999999999999999999999999999877432222211 12345455455556666553
Q ss_pred H
Q 005145 536 A 536 (712)
Q Consensus 536 A 536 (712)
+
T Consensus 561 l 561 (579)
T KOG1125|consen 561 L 561 (579)
T ss_pred H
Confidence 3
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.9e-12 Score=128.20 Aligned_cols=423 Identities=11% Similarity=0.045 Sum_probs=268.3
Q ss_pred cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005145 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
-..-.+....+|..|. .+.+....+.......+..|.|+|+.+. .++|+..+. .+ . +....++...
T Consensus 51 cKvValIq~~ky~~AL-k~ikk~~~~~~~~~~~fEKAYc~Yrlnk-~Dealk~~~-~~--------~---~~~~~ll~L~ 116 (652)
T KOG2376|consen 51 CKVVALIQLDKYEDAL-KLIKKNGALLVINSFFFEKAYCEYRLNK-LDEALKTLK-GL--------D---RLDDKLLELR 116 (652)
T ss_pred hhHhhhhhhhHHHHHH-HHHHhcchhhhcchhhHHHHHHHHHccc-HHHHHHHHh-cc--------c---ccchHHHHHH
Confidence 3334455566666665 3333333222333334788888888886 888887776 11 1 1113466778
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhh----------------------hcccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQSIEIPVIE----------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 329 (712)
|.+++++|+|++|...|+..++-.... ..+..+......+++.+.++...|+|.+|++
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999875432111 1122223345678999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005145 330 CYTTGLEVQKQVLGETDP-------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (712)
Q Consensus 330 ~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~ 402 (712)
.+++++.++++.+..++. ++..+...|+.++..+|+..+|...|...+...+. +.+..+.+-++|-.+-
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~----D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA----DEPSLAVAVNNLVALS 272 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC----CchHHHHHhcchhhhc
Confidence 999999999887655432 34567788999999999999999999988876543 3344454555554333
Q ss_pred HHcCCHH-HHHHHHHHHHH----HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005145 403 ETKGDHE-AALEHLVLASM----TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (712)
Q Consensus 403 ~~~g~~~-~A~~~~~~al~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (712)
....-++ .++..++.... .....-.......++.+.+.+.+..+.-+.+.+.....-. ..|......
T Consensus 273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~--------~~p~~~~~~ 344 (652)
T KOG2376|consen 273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG--------MSPESLFPI 344 (652)
T ss_pred cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc--------cCchHHHHH
Confidence 2222222 11111111100 0000001122234455666666666665555444332211 233333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcH
Q 005145 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 557 (712)
........+...+..|.+++...-+-. +.....+...++.+...+|+++.|++.+...+.........-...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~--------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~ 416 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGH--------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL 416 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccC--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence 333333333336777777776654431 222366788899999999999999999996654333322222122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (712)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (712)
..+...+-.+|++.++-+-|...+.+|+..++...... ......+..++..-.+.|+-++|...+++.++.
T Consensus 417 P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-------- 487 (652)
T KOG2376|consen 417 PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-------- 487 (652)
T ss_pred hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------
Confidence 22334556678888888889999999999888765444 334456677788888889999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHccc
Q 005145 638 HPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 638 ~p~~~~~~~~La~~~~~~g~ 657 (712)
+|....++..+..+|....-
T Consensus 488 n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred CCchHHHHHHHHHHHHhcCH
Confidence 88888999999888887665
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=1.1e-11 Score=131.60 Aligned_cols=297 Identities=15% Similarity=0.132 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
..++.....++...|++++|+.+++...... ......+-..|.++..+|++++|...|...+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3455556888899999999999998755443 114456888999999999999999999999888
Q ss_pred CChhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhcCCCCCH------------------------HHHHHH
Q 005145 345 TDPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASL------------------------EEAADR 395 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~------------------------~~a~~~ 395 (712)
+|+....+..+..+..... +.+.-..+|++....++....+... .+..++
T Consensus 68 -NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF 146 (517)
T PF12569_consen 68 -NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLF 146 (517)
T ss_pred -CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHH
Confidence 6777777777777763333 3555566666655554433221000 001122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 396 RLMGLICETKGDHEAALEHLVLASMTMIA-----------NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (712)
..+-.+|....+..-....+......... ...+....++++.+|+.|...|++++|+.++++||+.
T Consensus 147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--- 223 (517)
T PF12569_consen 147 SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--- 223 (517)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence 22223333222211111222221111111 0122335678899999999999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005145 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (712)
.|..+..+...|.++-..|++.+|...++.|..+- ...-.+-...+..+++.|+.++|.+.+..-.
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---------LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 89999999999999999999999999999998882 2234456677888999999999998876543
Q ss_pred HHHHhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005145 545 KIYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 545 ~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
.-......+-. ...+.....|.+|.+.|++..|+..|......+..+.+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 32111001111 2234456789999999999999999999999998876553
No 88
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2e-10 Score=113.83 Aligned_cols=425 Identities=15% Similarity=0.091 Sum_probs=285.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005145 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (712)
+.-....+...|.--..+++ +..|...|++||..- ......+...+.+-++......|..++.+|+.+.+
T Consensus 69 nR~~~~~WikYaqwEesq~e-~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKE-IQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 33445556666666666665 777777777777542 12244566678888899999999999999998863
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005145 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
. . -..|+....+-..+|+...|...|++-+.. .|.. .+|......-......+.|...|++.
T Consensus 139 R-----V----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 139 R-----V----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred h-----H----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1 123666677777889999999999888776 2332 45555555556666777777777776
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
+-..++. ..+...+..-...|+...|...|..|+..+ +++......+...|..-..+..++.|..+|+
T Consensus 201 V~~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 201 VLVHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFL---GDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred heecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544332 256666777777777777777777776544 2333344444455555555666666666666
Q ss_pred HHHHHH---------------HHhcCC---------------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 457 KALTAF---------------KTNKGE---------------------NHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 457 ~al~~~---------------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
-|++.. ++.+|. .+|.+..+|+..-.+-...|+.+.-.+.|++|
T Consensus 269 yAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 269 YALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555431 111111 25556677888888888889999999999999
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 501 LRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
+.-................|.+.+.. -+...+.+.+.++|+.++.+.|. ...+.+.++...|....++.+...|..
T Consensus 349 Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH---kkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 349 IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH---KKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---ccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 87632210000001122233333321 23467899999999999997653 245778899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005145 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-- 657 (712)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-- 657 (712)
.+-.|+..+.+ ..++...-.+-.++++++....+|++.++. .|....++...|.+-..+|+
T Consensus 426 iLG~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 426 ILGNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHH
Confidence 99999876421 134445556777889999999999999998 99999999999999999998
Q ss_pred -----hh-hhCCCChhHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 658 -----EE-KLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 658 -----~~-~l~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
++ ++....-+.+. .|......-...|.++.|. ..|+.+|++.+.
T Consensus 489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h 539 (677)
T KOG1915|consen 489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence 11 11111111121 2444555666799999999 999999998876
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.6e-11 Score=114.08 Aligned_cols=400 Identities=16% Similarity=0.090 Sum_probs=215.6
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005145 233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM 312 (712)
Q Consensus 233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (712)
...| |..|+.+++-.+..-+ .+....-.++|.|++.+|+|++|+..|.-+.+.. ++ ....+.
T Consensus 34 s~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~v 95 (557)
T KOG3785|consen 34 SNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELGV 95 (557)
T ss_pred hccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccch
Confidence 3434 8999988887764321 1223445568999999999999999998876532 11 233588
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH---------------------------HHHHHHHhCC
Q 005145 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY---------------------------LAEAHVQALQ 365 (712)
Q Consensus 313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------------------------la~~~~~~g~ 365 (712)
+||.+++.+|.|.+|.....++-+ .|...+.++. ||.+++..-.
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H 166 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH 166 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 999999999999999887766532 2333333333 3334444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005145 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (712)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (712)
|.+|++.|.+.+.-.+.. ...-..+|.+|..+.-++-+.+.+.--+ ...|+...+.+..+...++.
T Consensus 167 YQeAIdvYkrvL~dn~ey--------~alNVy~ALCyyKlDYydvsqevl~vYL------~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEY--------IALNVYMALCYYKLDYYDVSQEVLKVYL------RQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHhcChhh--------hhhHHHHHHHHHhcchhhhHHHHHHHHH------HhCCCcHHHHHHHHHHHhhh
Confidence 444444444444322111 1123334444444444444444333222 12222233333333333332
Q ss_pred CCHHHHHHHHHHHHHHHH-------Hh---------cCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 446 SRYDEAGFAYQKALTAFK-------TN---------KGE--------NHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~-------~~---------~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
=.-..|..-......-.. .+ .|+ --...+.+..+|+..|.++++..+|..++...
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl- 311 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL- 311 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-
Confidence 111122221111111000 00 000 00112334445555555555555554443321
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHH
Q 005145 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDSY 578 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~ 578 (712)
.|..+.-+...|.++...|+--...+.++-|-+.+.-. |... ....-...+|.+++-..+|++.+
T Consensus 312 -----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 312 -----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred -----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHH
Confidence 22233334455555555555444444444443333222 2111 00111234666777777888888
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-
Q 005145 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR- 657 (712)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~- 657 (712)
.++...-..+.. . -...+++|+++...|++.+|.++|-+.- ++.-.+.......||.||...+.
T Consensus 380 ~YlnSi~sYF~N---d-----D~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 380 TYLNSIESYFTN---D-----DDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHhcC---c-----chhhhHHHHHHHHhcChHHHHHHHhhhc-------ChhhhhhHHHHHHHHHHHHhcCCc
Confidence 877765544321 1 1456789999999999999998876643 22223445566789999999988
Q ss_pred ----hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 658 ----EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 658 ----~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.-.+....| +.-..+..+|...++.+++-=|. +.|..+-..+|.
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCC
Confidence 222223333 33345666788888999998888 899998888886
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.8e-11 Score=114.64 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=244.5
Q ss_pred cccccccccccCccccc-cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005145 196 PMKKRKGKLHKGQDVSE-AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI 274 (712)
Q Consensus 196 ~~~~~~~~~~a~~~~~~-~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~ 274 (712)
.+....+|..|+..+.- ...+..+....-+.+|.+++..|+ |++|+..|.-+..- ...+ +....+||.|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc 100 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACC 100 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHH
Confidence 35566677777732222 223333445677889999999997 99998888766541 1222 4556779999
Q ss_pred HHHcCCHhHHHHHHHHhhchhhhh---------hcccchH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 275 YCSLGQYNEAIPVLEQSIEIPVIE---------EGQEHAL--------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
++-+|.|.+|.....++-+..-.. .+.+... ...+-...||.+.+..-.|.+|++.|.+++.-
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999887775421100 0111100 01122345677777777788888888887765
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH--cCCHHHH----
Q 005145 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET--KGDHEAA---- 411 (712)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~--~g~~~~A---- 411 (712)
+|+....-.++|.||+++.-|+-+.+++.-.+...++.. .+.+..+...++ .|+..++
T Consensus 181 --------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 181 --------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred --------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHH
Confidence 677777888999999999999999888877776654432 133333433332 2322221
Q ss_pred ------------HHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 412 ------------LEHLVLASMTMIAN--------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 412 ------------~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
...++.-+-.++.. +.-..++.+..++...|..+++..+|..+.+.. .|
T Consensus 245 ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~P 313 (557)
T KOG3785|consen 245 LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DP 313 (557)
T ss_pred HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CC
Confidence 11111100000000 011224567788899999999999988776543 67
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
..+.-+...|.+....|+--...+.+.-|-..+.-.......-+.......+|.+++-..++++.+.++......+-+.
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd- 392 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND- 392 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 7777888889999998887777776666655544332122222334445677888888889999999888766665433
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
+ ...+++|.++...|+|.+|.++|-+.-.. .-.........||.||...+.++-|...+-+
T Consensus 393 D------~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 393 D------DFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred c------hhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 1 35678999999999999999988665321 1112234567789999999999999887755
No 91
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.3e-09 Score=108.47 Aligned_cols=418 Identities=14% Similarity=0.007 Sum_probs=277.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHhHHHHHHHHhhchhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI 297 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 297 (712)
-.+...+++|..++.--+|++.|...+++|..+.+...... .....++..|+.+|.... .+..|...+++++++.
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels-- 119 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS-- 119 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--
Confidence 34667789999988888889999999999999887653221 233567778899999887 8999999999999997
Q ss_pred hhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------------------------HHH
Q 005145 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------------------------------KQV 341 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------------~~~ 341 (712)
...|...-..++.|+.++....++..|++.+.-..+.+ ..+
T Consensus 120 ---q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi 196 (629)
T KOG2300|consen 120 ---QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQI 196 (629)
T ss_pred ---cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 34443344457899999999999998887743221111 001
Q ss_pred hCCC--ChhHHHHH----HHHHH-HHHHhCCHHHHHHHHHHHHHHHHhcCC-----------CCCHHH----------HH
Q 005145 342 LGET--DPRVGETC----RYLAE-AHVQALQFSEAQKFCQMALDIHKDNGS-----------PASLEE----------AA 393 (712)
Q Consensus 342 ~~~~--~~~~~~~~----~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~----------a~ 393 (712)
.... ++...+.+ ..+-. .|...|+...+...+++.-........ .+.+.. +.
T Consensus 197 ~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaL 276 (629)
T KOG2300|consen 197 WQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICAL 276 (629)
T ss_pred HhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhh
Confidence 0000 11111111 11111 233445555555444433222211111 011111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV--------ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
+|..-..--...|-+++|.++-++++.........+.. ...+-++..+-.-.|++.+|++....+.+.+.+.
T Consensus 277 V~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~ 356 (629)
T KOG2300|consen 277 VYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF 356 (629)
T ss_pred hhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 11111111224577899999999888776655444422 2335566777788999999999999999988775
Q ss_pred cCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005145 466 KGE--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 466 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
.++ -....+.+...+|......+.++.|...|..|.+.... ....+.+-.++|..|...|+-+.-.+ +
T Consensus 357 p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed~y~----~ 426 (629)
T KOG2300|consen 357 PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAEDLYK----A 426 (629)
T ss_pred CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHHHHH----H
Confidence 431 12234667778888888899999999999999998654 33356677889999999887554333 3
Q ss_pred HHHHHhCCCCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 005145 544 LKIYNDAPGQQ----STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (712)
Q Consensus 544 l~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 619 (712)
++......... ...+.+++..|...+.++++.||...+.+.+++.... ......+..+..||.+..-.|+..++
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33221110111 1345678888999999999999999999999987332 22345567888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
....+-++++.+++.+ +|-......-+-.+|...|+
T Consensus 505 ~nmvrpamqlAkKi~D--i~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HhccchHHHHHhcCCC--chHHHHHHHHHHHHHHHhCc
Confidence 9999999999888744 77777777777778888776
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.2e-09 Score=108.61 Aligned_cols=377 Identities=13% Similarity=-0.003 Sum_probs=245.3
Q ss_pred ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC 276 (712)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~ 276 (712)
-.+++.+..|..-+..+...+.....+++..+..-+.... ...|...+++|+.++ |..-..++....+-.
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~-vNhARNv~dRAvt~l---------PRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ-VNHARNVWDRAVTIL---------PRVDQLWYKYIYMEE 152 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-HhHHHHHHHHHHHhc---------chHHHHHHHHHHHHH
Confidence 3445555666667777888888899999999999998875 999999999999988 445566666666677
Q ss_pred HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005145 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356 (712)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 356 (712)
.+|+..-|.++|++-+...+ +. .+|......-......+.|...|++-+-. ||.+ ..|...
T Consensus 153 ~LgNi~gaRqiferW~~w~P-----~e-----qaW~sfI~fElRykeieraR~IYerfV~~--------HP~v-~~wiky 213 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEP-----DE-----QAWLSFIKFELRYKEIERARSIYERFVLV--------HPKV-SNWIKY 213 (677)
T ss_pred HhcccHHHHHHHHHHHcCCC-----cH-----HHHHHHHHHHHHhhHHHHHHHHHHHHhee--------cccH-HHHHHH
Confidence 78999999999999887642 11 13555555555556666677777666554 4433 456666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------
Q 005145 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA------------ 424 (712)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------ 424 (712)
+..-...|+..-|...|.+|++...+. ......+...|..-..+..++.|.-.|.-|+..+..
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d-----~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDD-----EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 666667777777777777777665432 122223334444444555555555555554432211
Q ss_pred --------------------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 005145 425 --------------------------NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-HPAVASVF 477 (712)
Q Consensus 425 --------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~ 477 (712)
...+|....+++..-.+-...|+.+.-.+.|++|+.-........ ....+..|
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 112333445566666667778999999999999987522110000 11123333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005145 478 VRLADM-YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (712)
Q Consensus 478 ~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (712)
.+.+.. -....+.+.+.+.|+.++++... .....+.+|...|....++.+...|.+.+-.|+-.+|..
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPH-----kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------ 437 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPH-----KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------ 437 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------
Confidence 333322 23578999999999999998633 356678889999999999999999998888888776654
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
.+......+-.++++++....+|++-++. .|....+|...|.+-..+|+.+.|...|+-|+.
T Consensus 438 --KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 438 --KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred --hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 24444455555666666666666666653 233445666666666666666666666665554
No 93
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=3e-12 Score=128.22 Aligned_cols=240 Identities=17% Similarity=0.162 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+..|...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|++|+.++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 445666778888899999999999999998888888888888888888888666 99999999999999998875 245
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
..+.++..+|.+|... |++++|+++|++|+.++... ........++..+|.++...|+|++|++.|++........
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 5688999999999999 99999999999999999873 3455667888999999999999999999999987754333
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Q 005145 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS 628 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 628 (712)
..........+...+.+++..|++..|...+++.......... ..-...+..|-.++.. ...+.+|+.-|.....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2222344456677888999999999999988887664322221 1223455566666653 3467778777777666
Q ss_pred HHHHhcCCCChhhHHHHHHH
Q 005145 629 ILEQECGPYHPDTLGVYSNL 648 (712)
Q Consensus 629 ~~~~~~~~~~p~~~~~~~~L 648 (712)
+ ++....++..+
T Consensus 266 l--------d~w~~~~l~~~ 277 (282)
T PF14938_consen 266 L--------DNWKTKMLLKI 277 (282)
T ss_dssp ----------HHHHHHHHHH
T ss_pred c--------HHHHHHHHHHH
Confidence 6 66555555443
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=5.8e-10 Score=118.69 Aligned_cols=301 Identities=18% Similarity=0.114 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
..++++..+.++...|+ +++|++.+....... .+....+...|.++..+|++++|...|...+...
T Consensus 3 ~SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---- 68 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGD-YEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---- 68 (517)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 45678889999999997 999999987755443 5557778889999999999999999999999886
Q ss_pred cccchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCC--------CCh----------------hHH
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGE--------TDP----------------RVG 350 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~ 350 (712)
|++.. .+..+..+..... +.+.-..+|.+....+...... ... .++
T Consensus 69 -Pdn~~----Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 69 -PDNYD----YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred -CCcHH----HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 44432 2555555552222 3445555555543332210000 000 011
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS---------PASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
.+..++-.+|....+..-...++...+........ .......++++.+|..|...|++++|++++++||
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-- 221 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-- 221 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 22222333333222222222222222222211110 1122345688999999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
...|..+..|...|.++-..|++.+|..+++.|..+ +...-.+....+..+.+.|+.++|...+..-.
T Consensus 222 ----~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 222 ----EHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred ----hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 567888999999999999999999999999999888 67667777888999999999999988776543
Q ss_pred HHHhcCCCCCCC--hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005145 502 RIYEKPVPGVPP--EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (712)
Q Consensus 502 ~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (712)
+--.. +..+. ....+.....|.+|.+.|++..|++.|..+..++.....+..
T Consensus 290 r~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQf 343 (517)
T PF12569_consen 290 REDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQF 343 (517)
T ss_pred CCCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 32110 00111 123445567799999999999999999999999988755443
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.42 E-value=2.6e-11 Score=118.90 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=148.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.....+..++.+|..++..|++++|+..|++++... ++++....++..+|.++...|++++|+..|+++++....
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 345567789999999999999999999999998872 224455678899999999999999999999999998543
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHhCCCCCCcH----------HHHHHHHHHHH
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTV----------AGIEAQMGVMY 568 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~la~~~ 568 (712)
.+....+++.+|.++... |++++|+..|++++...+......... ......+|.+|
T Consensus 103 ------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 103 ------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred ------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556788999999876 899999999999998766542111000 01124678999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+..|++.+|+..|++++..+.. .+....++..+|.++...|++++|..+++.....
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPD-----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999886321 2445689999999999999999999988876654
No 96
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=4.8e-08 Score=97.64 Aligned_cols=420 Identities=14% Similarity=0.078 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHHcC--CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHH
Q 005145 264 LVMCLHVIAAIYCSLG--QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~ 340 (712)
.+.++..+|..+...| +...++.+++...... +.. ...+.+...+|.++ ....+++.|..+++++..+.+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~-----is~-~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQ-----ISF-LVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccC-----ChH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 4667888899999898 8899999998877653 222 23556678888665 5678999999999999998766
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 341 VLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al 419 (712)
+..-. .....++..|+.+|.... .+..|...+++++++..... .+....++.|+.++....++..|++.+.-..
T Consensus 80 ip~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p----~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 80 IPSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP----YWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred cccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 42111 234567788999998877 89999999999999986654 4456678899999999999999999864322
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHH-HHHcCCHHHHHHH
Q 005145 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-HPA-VASVFVRLADM-YNRTGKLRESKSY 496 (712)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~-~~~~~~~la~~-~~~~g~~~~A~~~ 496 (712)
..+................+.++...-+..+.......+-.+.....+.. +.+ .-..|..+-.. |...|+...+...
T Consensus 155 ~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~ 234 (629)
T KOG2300|consen 155 ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPA 234 (629)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHH
Confidence 11110011111112222344455555566666677777666665543321 111 12233333333 4556887777766
Q ss_pred HHHHHHHHhcCCC----------CCCChhHH--------HHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHhCCCCCC-
Q 005145 497 CENALRIYEKPVP----------GVPPEEIA--------SGLTDVSSIY--ESMNELEQAIKLLQKALKIYNDAPGQQS- 555 (712)
Q Consensus 497 ~~~al~~~~~~~~----------~~~~~~~~--------~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~- 555 (712)
+++.-........ +.+.+... .++..+-.+- ...|-+++|.++-++++....+....+-
T Consensus 235 lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~ 314 (629)
T KOG2300|consen 235 LKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLM 314 (629)
T ss_pred HHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccch
Confidence 6654433222211 12222211 1111221111 2457789999999999988766533331
Q ss_pred ------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 556 ------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (712)
Q Consensus 556 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 627 (712)
.....+..+..+-.-.|++.+|++-...+.+.+.+... --....+.+.+.+|..+..-+.++.|...|..|.
T Consensus 315 srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~ 394 (629)
T KOG2300|consen 315 SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEAT 394 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHH
Confidence 11223445666777789999999999999988876654 1223345788899999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh-------HHHHHHHHHHHHHHhccHHHHHHHHH
Q 005145 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD-------VDDEKRRLAELLKEAGRVRSRKAQSL 693 (712)
Q Consensus 628 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~l 693 (712)
+...+. .-.+.+-.++|.+|...|+ .+.+++.+.. -..+++..|...+.++++.||+ ..+
T Consensus 395 k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK-~~l 468 (629)
T KOG2300|consen 395 KLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK-RFL 468 (629)
T ss_pred HhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 885442 1244567789999999998 3334433221 2446777788888999999999 999
Q ss_pred HHHHHhc
Q 005145 694 ETLLDAN 700 (712)
Q Consensus 694 ~~~l~~~ 700 (712)
.+.|+..
T Consensus 469 ~e~Lkma 475 (629)
T KOG2300|consen 469 RETLKMA 475 (629)
T ss_pred HHHHhhc
Confidence 8888754
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.39 E-value=3.5e-11 Score=118.00 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=146.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
++.....++.+|..++..|++++|+..+++++...+.. +....+++.+|.++...|++++|+..|++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 34567889999999999999999999999998876533 3334578999999999999999999999988543
Q ss_pred CCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHH--------------HHHHHHHH
Q 005145 426 DQDAEVASVDCSIGDTYLSL--------SRYDEAGFAYQKALTAFKTNKGENHPAVAS--------------VFVRLADM 483 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~la~~ 483 (712)
++.+....+++.+|.++... |++++|+..|++++..... ++.... ....+|.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-----SEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788999999876 8899999999999877221 211111 12467889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005145 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
|...|++.+|+..|++++..+.. .+....++..+|.++...|++++|..+++.....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPD------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999998544 4556889999999999999999999988776543
No 98
>PLN02789 farnesyltranstransferase
Probab=99.39 E-value=6.5e-11 Score=119.04 Aligned_cols=208 Identities=15% Similarity=0.024 Sum_probs=169.6
Q ss_pred HHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (712)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (712)
+...+++++|+..+.+++.+. |.+. .+|...+.++..+| ++++++.++.+++.. +|....+|
T Consensus 47 l~~~e~serAL~lt~~aI~ln-----P~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW 109 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-----PGNY----TVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW 109 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-----chhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence 334678899999999999886 4443 35889999999998 689999999999988 78888899
Q ss_pred HHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 354 RYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (712)
Q Consensus 354 ~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (712)
...+.++...|+. ++++.++.+++++.+++. .+|...+.++...|++++|++++.+++. .++..
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--------~AW~~R~w~l~~l~~~~eeL~~~~~~I~------~d~~N 175 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--------HAWSHRQWVLRTLGGWEDELEYCHQLLE------EDVRN 175 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHH------HCCCc
Confidence 9999999888874 788999999998876653 4899999999999999999999999984 45566
Q ss_pred HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 005145 432 ASVDCSIGDTYLSL---SRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENA 500 (712)
Q Consensus 432 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 500 (712)
..+++.++.+.... |.+ ++++.+..+++.+ .|....+|..++.++.. .++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 78888888888765 333 4788888899988 88889999999999988 45567788888887
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005145 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (712)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (712)
+.. .+....++..|+.+|...
T Consensus 248 ~~~---------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK---------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc---------cCCcHHHHHHHHHHHHhh
Confidence 664 333467788899998763
No 99
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.37 E-value=6.9e-11 Score=118.45 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
.+..+...|.+|...+++++|...|.++.....+... ....+..+...+.+|... ++++|+.+|++|+.++...+..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 4556677788888999999999999999999887553 355567777777777666 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 429 AEVASVDCSIGDTYLSL-SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
...+.++..+|.+|... |++++|+.+|++|++++.... .......++..+|.++...|+|++|++.|++........
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 999999999999999998875 245567788999999999999999999999988764332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 005145 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNA 584 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 584 (712)
..........+...+.+++..|++..|...+++.....+...+ ..-..++..|..++.. ...+..|+.-|...
T Consensus 189 --~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 189 --NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp --CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred --cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1123334456677888999999999999999988776654422 2333455556666543 23455555555544
No 100
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=3.4e-10 Score=113.92 Aligned_cols=223 Identities=13% Similarity=0.058 Sum_probs=177.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005145 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
+-.++...+++++|+..+.+++.+ +|....+|...+.++..+| ++++++.++++++.. .|..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npkn 105 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPKN 105 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCcc
Confidence 334455678999999999999999 8999999999999999998 689999999999998 3445
Q ss_pred HHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005145 517 ASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
..+|...+.++...|+. ++++.++.+++++.++. ..++...+.++...|++++|++++.++++.
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------- 171 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE------- 171 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------
Confidence 67799999999888874 77899999999887665 468999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------
Q 005145 595 KSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---------- 657 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---------- 657 (712)
.+....+|+..+.++... |.+ ++++.+..+++.+ .|++..++..++.++...++
T Consensus 172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 122347888888887765 323 5788888899998 99999999999999988432
Q ss_pred -hhhhCCCChhHHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHhcc
Q 005145 658 -EEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS 701 (712)
Q Consensus 658 -~~~l~~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~l~~~l~~~p 701 (712)
...+....|....++.-|+.+|.... ..++|. +.++.+-+.+|
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~ 304 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP 304 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence 22233457788888889999998632 235677 77777744333
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=3.6e-09 Score=103.67 Aligned_cols=303 Identities=17% Similarity=0.079 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005145 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (712)
.....-|..-+..|+ |.+|.....++-+. . +....+|..-+.+...+|+++.|-.++.++-+.. +
T Consensus 85 ~~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~ 149 (400)
T COG3071 85 RKALNEGLLKLFEGD-FQQAEKLLRRNAEH-------G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----G 149 (400)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----C
Confidence 344555666677776 88888877775432 2 2235567777888999999999999999998873 2
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (712)
+. ........+.+....|++..|..-..++++. .|....++.....+|...|+|.+...++.+.-+..-
T Consensus 150 ~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 150 DD---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred Cc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 22 3445888999999999999999999999988 677778888899999999999998888776543211
Q ss_pred hcCCCCCHHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 382 DNGSPASLEEAADRRLMGLI--CETKGDHEAALE---HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 382 ~~~~~~~~~~a~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
-...+ ..-+-..+.. +....+-..+.. +++.. -.....+|. +...++.-+...|++++|.+..+
T Consensus 219 ----l~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 219 ----LSDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred ----CChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcChh---HHHHHHHHHHHcCChHHHHHHHH
Confidence 11111 1112222211 122222222222 22211 111223333 34455778889999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005145 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (712)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (712)
++++.. .++. ....++ ...-++...=++..++.++. +++.+..+..||.++++.+.|.+|
T Consensus 288 ~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 288 DALKRQ------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHhc------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHH
Confidence 998861 1222 111111 23457777777777777776 444557899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
..+|+.|+...+.. ..+..+|.++.++|+..+|.+.+++++.++.
T Consensus 348 ~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 348 SEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 99999998876544 4678899999999999999999999996543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.1e-07 Score=100.66 Aligned_cols=391 Identities=18% Similarity=0.144 Sum_probs=222.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD 346 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 346 (712)
.|-..|...|.|++|.++.+.--.+ | .-..|++.|..+...++.+.|+++|+++-...-++ +..+.
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRi--------H---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRI--------H---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccce--------e---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 3456677777777777666542222 1 12358999999999999999999999863221110 11111
Q ss_pred h---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 347 P---------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 347 ~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
+ .....|...|......|+.+.|+.+|..|-+ |+.+..+.+.+|+.++|..+.++
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------------hhhheeeEeeccCchHHHHHHHh
Confidence 1 1124566778888888888888888887654 34555666667777776655543
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHhcCCCCHHH------HHHHHHHHHHHH
Q 005145 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL------TAFKTNKGENHPAV------ASVFVRLADMYN 485 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~------~~~~~~la~~~~ 485 (712)
. ++ -.+.+.+|+.|...|++.+|+..|.+|- .++++..-.+.-.+ ..-+...|..|.
T Consensus 964 s-------gd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 964 S-------GD----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred c-------cc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 2 21 2456678888888888888887776653 33333210000000 000112233333
Q ss_pred HcC-CHHHHHHHHHH------------------HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH------
Q 005145 486 RTG-KLRESKSYCEN------------------ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL------ 540 (712)
Q Consensus 486 ~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------ 540 (712)
..| .+..|..+|.+ ++++..+.+....+ +..+...+..+....+|++|..++
T Consensus 1033 e~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD---p~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1033 ELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD---PKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333 44444444433 33443333323333 455778888999999999998765
Q ss_pred HHHHHHHHhCC----------------CCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCCC--
Q 005145 541 QKALKIYNDAP----------------GQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA------IGER-- 594 (712)
Q Consensus 541 ~~al~~~~~~~----------------~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~-- 594 (712)
+.|+.++.... +.. .....++..+|.++.++|.|..|-+-|.+|-..++. .|+.
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcce
Confidence 44555544320 111 134567889999999999999999888876443322 1111
Q ss_pred ---------------------------CChH----------HHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHH
Q 005145 595 ---------------------------KSAF----------FGVALNQMGLACV--------QRYSINEAVELFEEARSI 629 (712)
Q Consensus 595 ---------------------------~~~~----------~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~ 629 (712)
..+. .+.++-.||..|. ...+|++|...+++|...
T Consensus 1190 I~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kC 1269 (1416)
T KOG3617|consen 1190 IRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKC 1269 (1416)
T ss_pred EEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHH
Confidence 0110 1124444554443 335677888777777776
Q ss_pred HHHhcCCCChhhH--HHHHHHHHHHHHccc--------------hhhh--CCCCh---hHHHHHHHHHHHHHHhccHHHH
Q 005145 630 LEQECGPYHPDTL--GVYSNLAGTYDAIGR--------------EEKL--GTANP---DVDDEKRRLAELLKEAGRVRSR 688 (712)
Q Consensus 630 ~~~~~~~~~p~~~--~~~~~La~~~~~~g~--------------~~~l--~~~~p---~~~~~~~~la~~~~~~g~~~~A 688 (712)
+.+.-..++..+. .....++.+-..+.. -+.+ .+..| .....+..|.+.+....+|..|
T Consensus 1270 l~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~A 1349 (1416)
T KOG3617|consen 1270 LLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPA 1349 (1416)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHH
Confidence 6655433332211 111112221111111 1111 12222 2345667778888899999999
Q ss_pred HHHHHHHHHHhccc
Q 005145 689 KAQSLETLLDANSR 702 (712)
Q Consensus 689 ~~~~l~~~l~~~p~ 702 (712)
. +.++++-...|.
T Consensus 1350 y-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1350 Y-RALTELQKKVPN 1362 (1416)
T ss_pred H-HHHHHHhhcCCc
Confidence 9 999999888887
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=9.6e-08 Score=98.76 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=211.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
+|.....|... +-+..|+..+-+..|.+|+...........+ ...+..+|..|...|+.+.|...|+++...- .
T Consensus 345 n~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y 418 (835)
T KOG2047|consen 345 NPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKVP--Y 418 (835)
T ss_pred CCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--c
Confidence 45555555444 4455788899999999998755333323333 3468899999999999999999999997421 1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCH------HHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHP------AVASVFVRLADMYNRTGKLRESKS 495 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~ 495 (712)
+.-.+++.+|+..|..-....+++.|+.+.++|...-.. .+....| ....+|..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 223467889999999999999999999999998765221 1111122 234566777777788888888899
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 005145 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (712)
.|++.+.+.-. .+.+..+.|..+....-+++|.+.|++.+.+++-. ....+...|......-+.....+
T Consensus 499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999888433 45667888999999999999999999998876421 11233333433333344445789
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH--HHHH
Q 005145 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA--GTYD 653 (712)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La--~~~~ 653 (712)
.|..+|++|++.+. +...-.++...+.+-..-|-...|+..|++|-.. .++...-.++++- .+-.
T Consensus 568 raRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 568 RARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHH
Confidence 99999999998542 2223345666677777778888888888886543 1333322222221 1111
Q ss_pred Hccc------hhhhCCCCh--hHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005145 654 AIGR------EEKLGTANP--DVDDEKRRLAELLKEAGRVRSRKAQSLETLL 697 (712)
Q Consensus 654 ~~g~------~~~l~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l 697 (712)
..|- +++....-| +........+.+-.+.|..+.|. ..|.-.-
T Consensus 635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~s 685 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGS 685 (835)
T ss_pred HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhh
Confidence 1222 222222223 33445667788888999999998 6665443
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.4e-09 Score=97.44 Aligned_cols=381 Identities=14% Similarity=0.029 Sum_probs=236.1
Q ss_pred ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC 276 (712)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~ 276 (712)
+....+|..+|+.+.......|.....+..+|.||+...+ |..|.++|++.-.++ |.........+..++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHH
Confidence 3455678888877778888899999999999999999987 999999999876655 555555555678888
Q ss_pred HcCCHhHHHHHHHHhhc----------hhhhh-------hc-----ccch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 277 SLGQYNEAIPVLEQSIE----------IPVIE-------EG-----QEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (712)
Q Consensus 277 ~~g~~~~A~~~~~~al~----------~~~~~-------~~-----~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 333 (712)
..+.+.+|+........ +...+ .+ ...| ...+....+.|.+.++.|+++.|++-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 88888888876654443 11000 00 0001 11334578899999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC----------C-----------CHHHH
Q 005145 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP----------A-----------SLEEA 392 (712)
Q Consensus 334 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~-----------~~~~a 392 (712)
+++.. -.....-++++.+++..++++.|+++..+.++..-+.... + .....
T Consensus 170 Alqvs--------GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 170 ALQVS--------GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHhhc--------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99882 2233455789999999999999999998888765433211 0 01234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
.+++..+.++++.|+++.|.+.+...- -...+...+.++.+++..- ..+++.+...-++-.+.+ .|.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmP----PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--------nPf 308 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMP----PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--------NPF 308 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCC----CcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--------CCC
Confidence 566677888899999998877664221 0111112234566666443 345666666666666665 444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHhCC
Q 005145 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
-...+.++-.+|++..-|+-|-..+-+--.+. .......++.|-..+ ..+-..++|.+-+...-.......
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lT--------yk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLT--------YKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchh--------HHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888766666555443211110 011122223333222 234456666665554433322110
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 631 (712)
. .. .+-......-........|++-|+++++++ ..++...+.+|+...+|..+...|+...+...
T Consensus 381 R---kl-Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 381 R---KL-AIQVQEARHNRDDEAIRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred H---HH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 0 00 000011111111112345666677776652 34667788999999999999999999988754
No 105
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=4.5e-08 Score=96.15 Aligned_cols=301 Identities=14% Similarity=0.033 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (712)
....-|..-+..|+|.+|.....++-+.. +.| .-.+..-+.+-..+|+++.|-.++.++-+.. .
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~------e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~ 149 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG------EQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------G 149 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcC------cch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------C
Confidence 34445667777899999999999865542 222 2246777888899999999999999988772 1
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005145 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
..........+.+....|+++.|..-..++++..+... .++.....+|...|++.....++.+..+. .-
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka---~~ 218 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--------EVLRLALRAYIRLGAWQALLAILPKLRKA---GL 218 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--------HHHHHHHHHHHHhccHHHHHHHHHHHHHc---cC
Confidence 23445677888999999999999999999998876653 36778889999999999999888765321 11
Q ss_pred CChhHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 427 QDAEVASVDCSIGDT--YLSLSRYDEAGF---AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 427 ~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
.......-+-+.+.. +....+-..+.. +++..-.. -...+.+...++.-+...|+.++|.+..++++
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--------LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 112222222222221 112222222222 22221111 11123455667888899999999999999999
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
+.... . . ....++ ...-+++..=++..++.++..++.+ .++..||.+|++.+.|.+|..+|
T Consensus 291 k~~~D------~-~---L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p-------~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 291 KRQWD------P-R---LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDP-------LLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HhccC------h-h---HHHHHh--hcCCCCchHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHhhHHHHHHHHH
Confidence 87322 1 1 122222 2345677777777777776654442 57889999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005145 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
+.|+... + .+..+..+|.++.++|+..+|.+.+++++-++
T Consensus 352 eaAl~~~-------~--s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 352 EAALKLR-------P--SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHhcC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9998751 1 24678889999999999999999999999654
No 106
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=9.1e-07 Score=91.76 Aligned_cols=432 Identities=14% Similarity=0.135 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005145 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (712)
.+++.....+..+|+ ...-...|.+||..+... .+.. .+-..-......+-.+-++..|++-|++.+
T Consensus 103 RIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----qH~r---IW~lyl~Fv~~~~lPets~rvyrRYLk~~P----- 169 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----QHDR---IWDLYLKFVESHGLPETSIRVYRRYLKVAP----- 169 (835)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----hhcc---chHHHHHHHHhCCChHHHHHHHHHHHhcCH-----
Confidence 344555556677775 777778888887765322 1111 111112233344555566666666666642
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------------HHHhCC
Q 005145 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------------------------------KQVLGE 344 (712)
Q Consensus 302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------------------~~~~~~ 344 (712)
... ...-..+...+++++|...|...+..- +..++.
T Consensus 170 ~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 170 EAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred HHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 111 112223334445555544444332211 000111
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------------CHHHH
Q 005145 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------------DHEAA 411 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-------------~~~~A 411 (712)
-.......|..||..|...|.++.|...|++++...-...+-.....+.+.+.-..+...++ +++-.
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 12356778999999999999999999999999976543332111111111111111111111 12222
Q ss_pred HHHHHHHHHHHH------hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005145 412 LEHLVLASMTMI------ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (712)
Q Consensus 412 ~~~~~~al~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (712)
+..|+..+.... ....++.....+ +-.+-+..|+..+-+..|.+|+....-... .......|..+|.+|.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHH
Confidence 233333321100 001222223333 334555678899999999999876432221 2234678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh-----CCCCCC-----
Q 005145 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND-----APGQQS----- 555 (712)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~----- 555 (712)
..|+.+.|...|+++...-= ....+.+.+|...|..-+...+++.|+.++++|..+-.. ..+..+
T Consensus 399 ~~~~l~~aRvifeka~~V~y-----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPY-----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 99999999999999988621 223457889999999999999999999999998754221 111111
Q ss_pred -cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005145 556 -TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 556 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
....+|..++.+....|-++.....|++.+++.- -.| .+..+.|..+....-+++|.+.|++.+.++
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~YErgI~LF---- 541 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKAYERGISLF---- 541 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccC----
Confidence 1234566677777778888888888888887621 122 456677878877778888888888888773
Q ss_pred CCCChhhHHHHHHHHHHHH-Hccc----------hhhhCCCChhHHHHHH-HHHHHHHHhccHHHHHHHHHHHHH
Q 005145 635 GPYHPDTLGVYSNLAGTYD-AIGR----------EEKLGTANPDVDDEKR-RLAELLKEAGRVRSRKAQSLETLL 697 (712)
Q Consensus 635 ~~~~p~~~~~~~~La~~~~-~~g~----------~~~l~~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~l~~~l 697 (712)
..|...+.|...-..+. +.|- ++.+..-.|..+..++ ..+.+-..-|-...|. ..|+++-
T Consensus 542 --k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~am-siyerat 613 (835)
T KOG2047|consen 542 --KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAM-SIYERAT 613 (835)
T ss_pred --CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence 24555444443322222 2222 4444444455555433 3455555667777777 7776653
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=2.7e-09 Score=118.58 Aligned_cols=286 Identities=12% Similarity=0.084 Sum_probs=194.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
+.-+|....++..|...+...+++++|+..++.+++..+... ..|+.+|.++...+++.++... .
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv--~----- 88 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL--N----- 88 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh--h-----
Confidence 444688899999999999999999999999999988876654 3788899999999987666543 2
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
++.......++ .++.++...+.. .+..-.+++.||.||..+|++++|...|+++++
T Consensus 89 ---------------~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 89 ---------------LIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred ---------------hhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 23333344455 344444433332 445556888999999999999999999999998
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
+ .+..+.+++++|..|... ++++|+.++.+|+..+-+. ........+|.. .+.....+++.=..+.+
T Consensus 145 ~---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ 211 (906)
T PRK14720 145 A---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIER 211 (906)
T ss_pred c---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHH
Confidence 8 455678899999999988 9999999999998875543 222222222222 12222233333222222
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhC
Q 005145 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLG 662 (712)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~ 662 (712)
+.... .+ .......+.-+=..|...++|++++.+++.++++ .|.+..+...|+.+|...-
T Consensus 212 ki~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~~kY------ 271 (906)
T PRK14720 212 KVLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYKEKY------ 271 (906)
T ss_pred HHHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHHHHc------
Confidence 22221 11 1223456666778899999999999999999999 8889999999999998332
Q ss_pred CCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 663 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 663 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
..|+...+. ..+..+-..-..+..|+ ..|+..+-..+.
T Consensus 272 ~~~~~~ee~-l~~s~l~~~~~~~~~~i-~~fek~i~f~~G 309 (906)
T PRK14720 272 KDHSLLEDY-LKMSDIGNNRKPVKDCI-ADFEKNIVFDTG 309 (906)
T ss_pred cCcchHHHH-HHHhccccCCccHHHHH-HHHHHHeeecCC
Confidence 335544432 33444433344667788 888887765554
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.18 E-value=5e-10 Score=99.58 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 005145 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449 (712)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 449 (712)
..++++++++.+.. +..+|.++...|++++|+.+|++++ ...|....++..+|.++...|+++
T Consensus 13 ~~~~~~al~~~p~~-----------~~~~g~~~~~~g~~~~A~~~~~~al------~~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDPET-----------VYASGYASWQEGDYSRAVIDFSWLV------MAQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHcCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHHHhhHH
Confidence 45678888776542 4568999999999999999999998 457778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005145 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (712)
+|+..|++++.+ .|....+++++|.++...|++++|+..|++++.+. |.....+..++.+...
T Consensus 76 ~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 76 TAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---------YADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHH
Confidence 999999999998 88889999999999999999999999999999983 3345556666665443
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=5.9e-10 Score=99.13 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005145 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (712)
..+|++++++ .|.. +..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|+
T Consensus 13 ~~~~~~al~~---------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV---------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-------WRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc---------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHHhh
Confidence 4577888887 3332 6678999999999999999999999875544 4788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005145 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (712)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 653 (712)
+++|+..|++++.+ .+....+++.+|.++...|++++|+..|++++.+ .|+....+.+++.+..
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHH
Confidence 99999999999985 2334589999999999999999999999999999 8888888888887765
Q ss_pred Hc
Q 005145 654 AI 655 (712)
Q Consensus 654 ~~ 655 (712)
..
T Consensus 138 ~l 139 (144)
T PRK15359 138 MV 139 (144)
T ss_pred HH
Confidence 43
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.6e-07 Score=96.86 Aligned_cols=341 Identities=16% Similarity=0.140 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005145 222 PLLLKQARELISSGDNPQKALELAL--------RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~--------~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
.+|-++|.......+ .+-|.-+.- +|++..++. +. ...+ ..|.+...+|-.++|..+|.+.-.
T Consensus 758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~--~~--e~ea----kvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQN--GE--EDEA----KVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhC--Cc--chhh----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355666776666665 666655432 222222111 11 1112 235666778888888888887543
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (712)
+-.|-..|...|.+++|.+..+.- +...+..+|++.|..+...++.+.|+++|
T Consensus 829 -----------------~DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 829 -----------------YDLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred -----------------HHHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 334556788888888887665532 22345678899999999999999999999
Q ss_pred HHHHH----HH---HhcCCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 374 QMALD----IH---KDNGSP-----ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (712)
Q Consensus 374 ~~al~----~~---~~~~~~-----~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (712)
+++-. +. ...... .....-..|...|..+...|+.+.|+.+|..|. -|+.+-.+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------------D~fs~VrI 947 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------------DYFSMVRI 947 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------------hhhhheee
Confidence 87631 11 111000 000012356777888888888888888888764 24555666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCCChh
Q 005145 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEE 515 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~ 515 (712)
...+|+.++|..+.++.- ...+.+.||+.|...|++.+|+.+|.+| ++++++.. -...
T Consensus 948 ~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~ 1011 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR 1011 (1416)
T ss_pred EeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence 777888888876655432 2356788999999999999999988765 44444421 0111
Q ss_pred HHH--------HHHHHHHHHHHcc-cHHHHHHHHHHH------------------HHHHHhCCCCCCcHHHHHHHHHHHH
Q 005145 516 IAS--------GLTDVSSIYESMN-ELEQAIKLLQKA------------------LKIYNDAPGQQSTVAGIEAQMGVMY 568 (712)
Q Consensus 516 ~~~--------~~~~la~~~~~~g-~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~la~~~ 568 (712)
.+. -+...|..|...| +.+.|..+|.+| +++........ .-+.++...+..+
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~-sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG-SDPKLLRRCADFF 1090 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC-CCHHHHHHHHHHH
Confidence 100 0112334455555 556666655443 33333322222 2245677788889
Q ss_pred HHcCCHHHHHHHHHH------HHHHHHHhC-----------------CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 569 YMLGNYSDSYDSFKN------AISKLRAIG-----------------ERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 569 ~~~g~~~~A~~~~~~------al~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
....+|++|..++-. |+.++..-+ .........++..+|.++.++|.|..|-+-|.+
T Consensus 1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 999999999877544 444443211 111122346889999999999999999999988
Q ss_pred HHHH
Q 005145 626 ARSI 629 (712)
Q Consensus 626 al~~ 629 (712)
|-..
T Consensus 1171 AGdK 1174 (1416)
T KOG3617|consen 1171 AGDK 1174 (1416)
T ss_pred hhhH
Confidence 8553
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.17 E-value=1.6e-09 Score=119.68 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=141.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (712)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (712)
+....+....+...+-+++.+.+. .+....++..||.+....|.+++|..+++.++++.|+. ..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------~~a~~ 124 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------SEAFI 124 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------HHHHH
Confidence 334445555555556666666554 47778999999999999999999999999999998765 34788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005145 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (712)
.++.++...+++++|+..+++++ ...|+.+..++.+|.++..+|++++|+.+|++++.. +|....+
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l------~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~ 190 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYF------SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENG 190 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHh------hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHH
Confidence 99999999999999999999998 567888999999999999999999999999999985 7888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
+..+|.++...|+.++|...|+++++....
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999998643
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=1.6e-08 Score=106.31 Aligned_cols=251 Identities=18% Similarity=0.146 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005145 238 PQKALELALRAAKSFEIGAN----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK 307 (712)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 307 (712)
.+++....+.+.+.++.... ...-|.....-..++..+...|-...|+..|++.
T Consensus 361 veR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------------- 424 (777)
T KOG1128|consen 361 VERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------------- 424 (777)
T ss_pred hhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------
Confidence 56666666665555443211 1111334555667899999999999999999863
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005145 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
..|.....||...|+..+|..+..+-++- +..+..|..+|.+... ..+|+++.++.....
T Consensus 425 -emw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~s--- 484 (777)
T KOG1128|consen 425 -EMWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHD-------PSLYEKAWELSNYIS--- 484 (777)
T ss_pred -HHHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccC-------hHHHHHHHHHhhhhh---
Confidence 24777889999999999998888776652 3444556666555544 455555555554332
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005145 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
+.+...+|......++|.++..+++.++. ..+....+|+.+|.+..+.+++..|...|..++.+
T Consensus 485 ----arA~r~~~~~~~~~~~fs~~~~hle~sl~------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------ 548 (777)
T KOG1128|consen 485 ----ARAQRSLALLILSNKDFSEADKHLERSLE------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------ 548 (777)
T ss_pred ----HHHHHhhccccccchhHHHHHHHHHHHhh------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence 23556677777789999999999999884 56777889999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
.|+...+|++++..|...++-.+|...+.+|++.-.+ ...+|.|.-.+..+.|.+++|++.+.+.+.+.
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999998322 24567788888899999999999999999887
Q ss_pred HhCC
Q 005145 548 NDAP 551 (712)
Q Consensus 548 ~~~~ 551 (712)
....
T Consensus 618 ~~~~ 621 (777)
T KOG1128|consen 618 KKYK 621 (777)
T ss_pred hhcc
Confidence 6653
No 113
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.16 E-value=2e-05 Score=88.05 Aligned_cols=464 Identities=14% Similarity=0.050 Sum_probs=278.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+.+.+.+|..++..-+|++.|..++.+++.+.++. +- ......+.+.++.++.+.+... |...+++.++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence 5677889999999987788999999999999887541 11 1223556667899999888877 99999999988643
Q ss_pred hcccchHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 299 EGQEHALAKFAGHMQL-GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (712)
..+.. ...++..+ ...+...+++..|+..++......... .+......+....+.+....+..+++++.++++.
T Consensus 132 --~~~~~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 --YGHSA-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred --cCchh-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 11111 11112222 233333379999999999999886532 1122233444555777778888899999999997
Q ss_pred HHHHhc--CCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCCh------------------------
Q 005145 378 DIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA------------------------ 429 (712)
Q Consensus 378 ~~~~~~--~~~~~~~~a~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 429 (712)
...... .+...+....++..+-. ++...|+++.+...+.+.-..+......+
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 766643 11113333344444433 45577888888777665544333221111
Q ss_pred ------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCC---------------HHHHHHHHH
Q 005145 430 ------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENH---------------PAVASVFVR 479 (712)
Q Consensus 430 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~---------------~~~~~~~~~ 479 (712)
..+.+|..-|......+..++|.+++.+++...++... ... .-...++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 11233444566667778888999999999999888761 000 012234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---C-C
Q 005145 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---Q-S 555 (712)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-~ 555 (712)
++.+.+-.+++..|...+..+.....+..........+..++..|..+...|+.+.|..+|.+..-........ . .
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 67777889999999999999988876532111233457788899999999999999999998655333222111 1 1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH-H
Q 005145 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL-E 631 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~-~ 631 (712)
...-+..++..++...+.-.....-+...++..... ..........++..+-.++. ..-...++...+.++++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 222334466667666554433222223333322221 11111222223332222222 2223458999999999987 3
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCChhHHHHHH------HHHHHHHHhccHHHHHHHHHHH
Q 005145 632 QECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTANPDVDDEKR------RLAELLKEAGRVRSRKAQSLET 695 (712)
Q Consensus 632 ~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~p~~~~~~~------~la~~~~~~g~~~~A~~~~l~~ 695 (712)
.. +. .--...++.-++..+. .|+ ........|+....+. -+...+...|+.++|. ....+
T Consensus 527 ~~-~n-~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~~~~ 602 (608)
T PF10345_consen 527 KL-GN-SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE-EARQQ 602 (608)
T ss_pred hh-cc-chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHH
Confidence 32 21 2223334555555554 444 1111122244443333 4566788899999998 66555
Q ss_pred H
Q 005145 696 L 696 (712)
Q Consensus 696 ~ 696 (712)
+
T Consensus 603 ~ 603 (608)
T PF10345_consen 603 L 603 (608)
T ss_pred H
Confidence 4
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=8.7e-09 Score=114.63 Aligned_cols=251 Identities=14% Similarity=0.063 Sum_probs=182.8
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005145 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (712)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 292 (712)
+..-+|....++..+...+...++ +++|+..++.+++.. |.....|+.+|.++++.+++.+|... .++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 556678999999999999989987 999999999888764 55677889999999999999988877 666
Q ss_pred chhhhhhccc-----------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005145 293 EIPVIEEGQE-----------HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (712)
Q Consensus 293 ~~~~~~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (712)
.+........ .+. .-.+++.+|.||..+|++++|...|++++++ +|..+.++.++|..|.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~-~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGE-NKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYE 161 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhh-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHH
Confidence 6543211000 000 1136899999999999999999999999999 7899999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (712)
.. ++++|+.++.+|+..+-........ . -.....+....-+++.=..+.++.+ ..-.....+..+.-+-..
T Consensus 162 e~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~----~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVL----GHREFTRLVGLLEDLYEP 232 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHH----hhhccchhHHHHHHHHHH
Confidence 99 9999999999999876443321111 1 1112222223333333333333222 111233455666667788
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
|...++|++++.+++.++++ .+....+...++.+|. +.|.. ...|++.+++.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 99999999999999999998 7777888999999988 44544 56667666664
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.13 E-value=4.9e-09 Score=115.98 Aligned_cols=160 Identities=8% Similarity=-0.004 Sum_probs=129.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005145 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (712)
+....+....+...+-+++.+.+. .+....++..||.+....|++++|+.+++.++++ .|+...++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------~Pd~~~a~ 123 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------FPDSSEAF 123 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------CCCcHHHH
Confidence 334445555555555566665543 5666889999999999999999999999999998 45568889
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005145 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (712)
.+++.++.+.+++++|+..+++++...++. +..++.+|.++.+.|++++|+.+|++++.. .+...
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~ 188 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSGGSSS-------AREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFE 188 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcH
Confidence 999999999999999999999998876665 467888999999999999999999999862 22345
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.++..+|.++...|+.++|...|++|++.
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999887
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=8.8e-09 Score=96.78 Aligned_cols=152 Identities=21% Similarity=0.246 Sum_probs=122.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (712)
-+..|+..|+++......++... +. .-+...++.++++..+++++ ...|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~-------~~------------~~~~~~~~~~~~i~~l~~~L------~~~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD-------PL------------HQFASQQTPEAQLQALQDKI------RANPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC-------cc------------ccccCchhHHHHHHHHHHHH------HHCCCCHHHH
Confidence 34578889998876544322111 00 01112567788888888887 3567778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHhcCCCCCC
Q 005145 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY-NRTGK--LRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------- 139 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--------- 139 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---------
Confidence 99999999999999999999999999 888899999999975 67787 59999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|....++..+|..+...|++++|+.++++++++.+.
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556788999999999999999999999999998764
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.6e-08 Score=88.70 Aligned_cols=209 Identities=14% Similarity=0.088 Sum_probs=159.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005145 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (712)
.+.++-+++....+.........++...++-.+..+....|+.+-|..++++.... .|...++...-|..+.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence 44556666666655544444345566677777788888899999999999887766 4555667777888999
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 005145 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (712)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (712)
..|++++|+++|+..++- +|....++..--.+...+|+.-+|++.+..-++.+... ..+|..++
T Consensus 98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa 161 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA 161 (289)
T ss_pred HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence 999999999999988765 34445556666667788899899999999988887655 47899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005145 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTL 642 (712)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~p~~~ 642 (712)
.+|...|+|++|.-++++.+-+ .|+....+..+|.+++-+| ++.-|..+|.+++++ .|...
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~ 225 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL 225 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence 9999999999999999998864 3444467777887777665 678899999999999 77777
Q ss_pred HHHHHHHHHHHH
Q 005145 643 GVYSNLAGTYDA 654 (712)
Q Consensus 643 ~~~~~La~~~~~ 654 (712)
.+++.+-.+-..
T Consensus 226 ral~GI~lc~~~ 237 (289)
T KOG3060|consen 226 RALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHH
Confidence 777766554443
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.4e-07 Score=86.09 Aligned_cols=225 Identities=17% Similarity=0.165 Sum_probs=167.5
Q ss_pred HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005145 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (712)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (712)
.+..+|.+|++++..-.+.. +. ....+..||.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 56778999999887655543 21 2335889999999999999999999998777 6888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (712)
.+..++..+.+..|+.......+.. .....++..-+.+.+..+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~--------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNP--------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 9999999999999998876654321 111234555566777788888887766543 112456778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-----
Q 005145 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG----- 510 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 510 (712)
.+.|-+.++.|+++.|++-|+.|++. .......-++++.++++.|+++.|+++..+.++..-+..+.
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 33334566789999999999999999998888764332110
Q ss_pred ----CC-----------ChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005145 511 ----VP-----------PEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 511 ----~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
.+ ...+..+++..+.++++.++++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 01234566777888999999988876653
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=8.2e-09 Score=96.99 Aligned_cols=150 Identities=12% Similarity=0.114 Sum_probs=121.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005145 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (712)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (712)
-+..|+..|+++......++.. + +. .-+...++.++++..+++++.. +|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~-~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------D-PL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------C-cc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 3557888999888654432211 0 00 0111367789999999999998 88899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHccc--HHHHHHHHHHHHHHHHhCCCCC
Q 005145 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNE--LEQAIKLLQKALKIYNDAPGQQ 554 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 554 (712)
..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++..++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l---------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---- 143 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL---------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---- 143 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----
Confidence 99999999999999999999999999 444577899999975 67787 599999999999987765
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
..++..+|..+...|++++|+.+|++++++.
T Consensus 144 ---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 ---VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3688999999999999999999999999863
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=7.5e-09 Score=108.66 Aligned_cols=223 Identities=15% Similarity=0.141 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005145 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (712)
..-..++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++ +.. +
T Consensus 399 q~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~--d- 456 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE---KDP--D- 456 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCC--c-
Confidence 34677899999999999998888873 3455667788899999999988877765 111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (712)
+..|..+|.+.....-|++|.++.... .+.+...+|......++|.++..+++.++++
T Consensus 457 ---~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------- 514 (777)
T KOG1128|consen 457 ---PRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI------- 514 (777)
T ss_pred ---chhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc-------
Confidence 225666666666655556665555432 2345666777777899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.|.....|+.+|.+..+.++++.|..+|..++.+ .|+...+|++++..|...++-.+|...+++|++...
T Consensus 515 -nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 515 -NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred -CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 8999999999999999999999999999999998 566789999999999999999999999999998753
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005145 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
+. ..+|.+.-.+....|.+++|+..|.+.+.+-+...
T Consensus 585 ~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 585 QH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 32 23566666778899999999999999998866544
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.1e-07 Score=85.85 Aligned_cols=196 Identities=16% Similarity=0.081 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005145 322 GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401 (712)
Q Consensus 322 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~ 401 (712)
.+.++-++++...+.....- .-.++....+..+..+....|+.+-|..++++....++... .+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--------RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--------RVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--------hHHHHHHHH
Confidence 34566666666666554432 12345666777788888899999999999998877775443 245567888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005145 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (712)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (712)
+...|++++|+++|+..+ .++|....++-..-.+...+|+.-+|++.+..-++. .+....+|..++
T Consensus 96 lEa~~~~~~A~e~y~~lL------~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eLa 161 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLL------EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHELA 161 (289)
T ss_pred HHHhhchhhHHHHHHHHh------ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHHH
Confidence 999999999999999887 566766677777777788899999999999999988 667788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhC
Q 005145 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 550 (712)
.+|...|+|++|.-++++.+-+ .|.....+..+|.+++-+| ++.-|.++|.+++++.+..
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~---------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLI---------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999999999999999999988 4556677888888888776 5678999999999997743
No 122
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.00 E-value=2.4e-09 Score=84.29 Aligned_cols=77 Identities=34% Similarity=0.562 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
+|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++..+|++++|+.++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 5555666788899999999999999999999999999999865
No 123
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.99 E-value=7.5e-05 Score=83.53 Aligned_cols=365 Identities=14% Similarity=0.027 Sum_probs=242.4
Q ss_pred hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005145 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (712)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (712)
..|+.+++-+++-. .-.|...+.+++.+|.++. ...+++.|..++.+++.+.++ ..-......+...++.++
T Consensus 38 ~~ai~CL~~~~~~~-----~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 38 ATAIKCLEAVLKQF-----KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHH
Confidence 45677777666422 3344556778999999988 789999999999999988654 111122345566778999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM-GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
.+.+... |...++++++........ . ...++..+ ...+...+++..|++.++.........++......+....+
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~--~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHS--A-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA 186 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCch--h-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 8888777 999999999988774321 1 12222223 33333348999999999999887776677666677777778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHhcCCCCC----
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTN--KGENHPAVASVFVRLAD--MYNRTGKLRESKSYCENALRIYEKPVPGV---- 511 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 511 (712)
.+....+..+++++..+++....... .+..++....++..+-. ++...|+++.+...+.+.-..........
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~ 266 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPS 266 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCC
Confidence 88888898999999999998877654 22223444445555544 34567887787776655544433221000
Q ss_pred ---C--------------------------ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC-CC----Cc-
Q 005145 512 ---P--------------------------PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQ----ST- 556 (712)
Q Consensus 512 ---~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~----~~- 556 (712)
+ ....+.+|..-|......+..++|.+++++++....+... .+ ..
T Consensus 267 ~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl 346 (608)
T PF10345_consen 267 WDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESL 346 (608)
T ss_pred cCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCH
Confidence 0 0012233444455666777778999999999998887641 00 01
Q ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 557 -------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVEL 622 (712)
Q Consensus 557 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 622 (712)
...++..++.+.+-.+++..|......+.......... .......+++..|..+...|+.+.|..+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~ 426 (608)
T PF10345_consen 347 SEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQ 426 (608)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12345567778888999999999999998877655432 2233457888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC---hhhHHHHHHHHHHHHHccc
Q 005145 623 FEEARSILEQECGPYH---PDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 623 ~~~al~~~~~~~~~~~---p~~~~~~~~La~~~~~~g~ 657 (712)
|.+..-.......+.. .-..-+..|+..++...+.
T Consensus 427 y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 427 YQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred HhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 9965544333333222 2233456677777775554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=3.5e-08 Score=91.94 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=138.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..|....+ .+++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..+.++..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--- 129 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--- 129 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence 45555555 78889999999999999988887665 6666667777999999999999999999999988
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
.|....+|..+|.+|.+.|+++.|...|.+++++.+..+ .+..++|..|.-.|+++.|..++..+..
T Consensus 130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445578899999999999999999999999999987653 5788999999999999999999999876
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
. +.....+..+|+.+...+|++.+|...-.+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 3 122236788999999999999998876544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.3e-08 Score=93.10 Aligned_cols=165 Identities=16% Similarity=0.067 Sum_probs=139.0
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
.|....+ ..++..+...|+-+.+..+..++....+.. ...+..+|......|+|.+|+..+.++.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------~~ll~~~gk~~~~~g~~~~A~~~~rkA~------ 127 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------RELLAAQGKNQIRNGNFGEAVSVLRKAA------ 127 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------HHHHHHHHHHHHHhcchHHHHHHHHHHh------
Confidence 4666666 889999999999999988888866544332 2244558999999999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
...|....++..+|.+|.+.|+++.|...|.+++++ .+....+..++|..|.-.|+++.|..++..+....
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~- 198 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP- 198 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 456777899999999999999999999999999999 77778899999999999999999999999987762
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005145 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (712)
+....+..+|+.+...+|++++|.....+
T Consensus 199 --------~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 199 --------AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --------CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 22356788999999999999999876543
No 126
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.97 E-value=9.4e-08 Score=107.45 Aligned_cols=397 Identities=16% Similarity=0.104 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005145 239 QKALELALRAAK-SFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (712)
Q Consensus 239 ~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (712)
+.|.+++..++. +...+++-...|+ +.+.++......+++..|...-++++++.+...+.++|. .+..+..++..
T Consensus 641 ~dav~~~~~al~k~~~~~~~~~fnp~---~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv~ 716 (1236)
T KOG1839|consen 641 DDAVKYATKALVKLVAVCGPYGFNPA---GFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSVF 716 (1236)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCcc---ccccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhcccccee
Confidence 456666555543 3333322222222 333347777788999999999999999988888888876 45567777767
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005145 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (712)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (712)
++....+.+|+.+-.+++.+.-...+..+|..+..+.+.+..-...+ +-+.+.+..+++-..+..+..+...+.. ..
T Consensus 717 p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ 793 (1236)
T KOG1839|consen 717 PYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HA 793 (1236)
T ss_pred eecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HH
Confidence 77777889999999999988877766666666544433333322223 5556666666655555444444333322 11
Q ss_pred HHHHHHH---cC----------------------------------------------------CHHHHH--HHHHHH--
Q 005145 398 MGLICET---KG----------------------------------------------------DHEAAL--EHLVLA-- 418 (712)
Q Consensus 398 la~~~~~---~g----------------------------------------------------~~~~A~--~~~~~a-- 418 (712)
+..++.. .. .+..+. .....+
T Consensus 794 ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~ 873 (1236)
T KOG1839|consen 794 LNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILL 873 (1236)
T ss_pred HHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhh
Confidence 1111110 00 000000 000000
Q ss_pred ------------------HHHH-H----hC-C-------------------CCh--hHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 419 ------------------SMTM-I----AN-D-------------------QDA--EVASVDCSIGDTYLSLSRYDEAGF 453 (712)
Q Consensus 419 ------------------l~~~-~----~~-~-------------------~~~--~~~~~~~~la~~~~~~g~~~~A~~ 453 (712)
+... + .. . ..| ..+.-....|......|.+.+|.+
T Consensus 874 ~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~ 953 (1236)
T KOG1839|consen 874 KNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE 953 (1236)
T ss_pred hcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh
Confidence 0000 0 00 0 000 112223445666667788888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
.-+++.++....+.-++..+..+..|+.++...|++++|+.+..++.-+.++.. +.+++.....+.+++...+..++.
T Consensus 954 -~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~-g~ds~~t~~~y~nlal~~f~~~~~ 1031 (1236)
T KOG1839|consen 954 -LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL-GKDSPNTKLAYGNLALYEFAVKNL 1031 (1236)
T ss_pred -hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-cCCCHHHHHHhhHHHHHHHhccCc
Confidence 888888888777778999999999999999999999999999999998888765 788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005145 534 EQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (712)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~ 612 (712)
..|+..+.++..+..-..+. .+..+.+..+++.++...++++.|+.+++.|+.....+..+.....+..+..+++++..
T Consensus 1032 ~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence 99999999999988766666 55677777899999999999999999999999988888777677778899999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005145 613 RYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (712)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 644 (712)
.+++..|....+....++...+|++|..+...
T Consensus 1112 ~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1112 MKDFRNALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred hHHHHHHHHHHhhHHHHHHHhhCCCcccchhh
Confidence 99999999999999999999999998876654
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.96 E-value=5.4e-09 Score=82.32 Aligned_cols=77 Identities=32% Similarity=0.554 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
||..+.++.++|.+|..+|++++|+.+|++++++.+.. +..++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 57889999999999999999999999999999995553 556677899999999999999999999999999999875
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=2.4e-08 Score=86.90 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+......+.+|..++..|++++|...|+-...+ +|.....|++||.++..+|+|.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 566677889999999999999999999999998 8999999999999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.++.+..+.++|.+++..|+.+.|.+.|+.++..+..
T Consensus 99 ----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 99 ----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 3445778999999999999999999999999999843
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=5.9e-06 Score=86.78 Aligned_cols=211 Identities=14% Similarity=0.128 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (712)
.|-.++.-|...|+|+.|.++|.++-. .......|...|+|.+|...-.+.. .+...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my~k~~kw~da~kla~e~~-------~~e~t 823 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GPEAT 823 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHHhccccHHHHHHHHHHhc-------CchhH
Confidence 344567777777888888777765421 2223345666777777766655442 23344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCC---------CH-HHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGEN---------HP-AVASVFVRLADMYNRTGKLRESKS 495 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~---------~~-~~~~~~~~la~~~~~~g~~~~A~~ 495 (712)
...|...+.-+-..|+|.+|.++| .+++.++.+.+-.+ ++ ........+|.-|...|+...|..
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 455556666666666666666555 34444444432211 22 234566677888888888888887
Q ss_pred HHHHHHH-------------------HHhcCCCCCCChhHHHHHH------HHHHHHHHcccHHHHHHH------HHHHH
Q 005145 496 YCENALR-------------------IYEKPVPGVPPEEIASGLT------DVSSIYESMNELEQAIKL------LQKAL 544 (712)
Q Consensus 496 ~~~~al~-------------------~~~~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~------~~~al 544 (712)
.|.++-. +.+...+.+.....+..|. .-..++-+.|-.+.|+.. |+-|.
T Consensus 904 ~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 904 HFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHH
Confidence 7655432 2222110000111111110 001223334444444432 22222
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+..- +....+..+...++..+...|++++|-+.|-+++.+
T Consensus 984 dlari--~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 984 DLARI--AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHH--hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 22221 122233346677888889999999999999888765
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.92 E-value=1.7e-08 Score=89.41 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
..+|........+|..+...|++++|...+++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 80 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-- 80 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 456666788899999999999999999999999987 7778899999999999999999999999999887
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.+.....++.+|.++...|++++|+.++++++++.+..
T Consensus 81 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 81 -------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 33456778999999999999999999999999986543
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.8e-08 Score=95.60 Aligned_cols=119 Identities=21% Similarity=0.311 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005145 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
.+..+..-|.-+...++|++|+..|.+||++.+.. +..|.+.+.+|.++|.++.|++-++.|+.+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 45667778888999999999999999999998766 357889999999999999999999999997
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+.+..+|..||.+|..+|++++|++.|++|+++ +|++.....+|..+-..++.
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcC
Confidence 4667899999999999999999999999999999 99999888888888777766
No 132
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.2e-06 Score=77.56 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+..|..-+..|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|++|..++.+.+ .|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence 445666677788889999999999999988888877888888999999999999999999999999999999987 45
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
+.+..-...+.-....-+.++|+.+|++++.+.+. ++........+...++++.+...+++|-..+.+-..+....
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 55555555555566778999999999999999887 34444556778888999999999999999888877666554
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
.........+.....+|+...+|..|..+++...++ +.-..+....++.+|-..|- .|+.++....+
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 333334445556666777788999999999887654 22222333456666655553 46766655443
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.88 E-value=2.7e-08 Score=86.58 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
++....++.+|..++..|++++|..+|+-+..+. +.. ...|++||.++..+|+|.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWS----FDYWFRLGECCQAQKHWGEAIYAYGRAAQI---- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----ccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 5567788889999999999999999999988875 433 345999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005145 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (712)
+|+.+..+.++|.|++..|+.+.|.+.|+.++..+.
T Consensus 99 ----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 678889999999999999999999999999999884
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=3e-08 Score=91.29 Aligned_cols=122 Identities=17% Similarity=0.067 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
....+.++..+|.++...|++++|+..|++++.+... +...+.++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456788999999999999999999999999998432 3445678999999999999999999999999988554
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
.......++.++..+|..+...|++++|+..+.+++..+++.....|.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 422222344455555555559999999999999999988877555543
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=3.2e-08 Score=93.95 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
..+..+..-|.-+...++|.+|+..|.+|| ...|..+..|++.|.+|.++|.++.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAI------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 345566778889999999999999999999 467788899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
+|....+|..||.+|..+|++.+|++.|+++|++ .|.......+|..+-..+++.
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel---------dP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL---------DPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc---------CCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999 333344455555554444443
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=8.4e-07 Score=84.14 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..++..|..++..|+|.+|+..|++++... |..+. ...+.+.+|.+++..|+++.|+..+++.+.....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 5678889999999999999999999998876 44443 3456899999999999999999999999988633
Q ss_pred CChhHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~ 413 (712)
++....+++.+|.+++... ...+|+..|+..+..+|+..- ..+|..
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y----------------------~~~A~~ 131 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY----------------------AEEAKK 131 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT----------------------HHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH----------------------HHHHHH
Confidence 6788899999999877653 234677777777777765532 122222
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005145 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (712)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (712)
.+..+. ..++.--..+|..|+..|.|..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 222211 12234445678999999999999999999888743 3566778899999999999988754
Q ss_pred H
Q 005145 494 K 494 (712)
Q Consensus 494 ~ 494 (712)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=1.6e-05 Score=83.69 Aligned_cols=227 Identities=17% Similarity=0.203 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHh------hchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQS------IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
.|-.-|.+|.+..++++|+++|++. +++.+-. .|...+..--..|.-+...|+++.|+.+|-.+-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3444566677777788888877653 3333211 12212223445677778888899888888776544322
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
........+|.+|+..++.........+ .|-.++.-|...|+|+.|.+.|.++-
T Consensus 739 ----------------ieaai~akew~kai~ildniqdqk~~s~---------yy~~iadhyan~~dfe~ae~lf~e~~- 792 (1636)
T KOG3616|consen 739 ----------------IEAAIGAKEWKKAISILDNIQDQKTASG---------YYGEIADHYANKGDFEIAEELFTEAD- 792 (1636)
T ss_pred ----------------HHHHhhhhhhhhhHhHHHHhhhhccccc---------cchHHHHHhccchhHHHHHHHHHhcc-
Confidence 1223344567777766654433322221 46677888999999999999998762
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 005145 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC--- 497 (712)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--- 497 (712)
....-..+|.+.|+|..|.++..+... .......|...+.-+-..|+|.+|..+|
T Consensus 793 -------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 793 -------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred -------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 112223567788999998877666532 4455677777888888889998888776
Q ss_pred ---HHHHHHHhcCCCCC---------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 498 ---ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 498 ---~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.+++.++.+....+ .......+...+|.-|...|+...|...|-+|-.
T Consensus 851 ~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 851 GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 45555555432110 0112344566677777777887777777766543
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.87 E-value=1e-06 Score=83.60 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
....++..|..++..|+|.+|+..|++.+..+. ..+....+.+.+|.+++..|++++|+..+++.+..+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 356678899999999999999999999988733 36778889999999999999999999999999999665
Q ss_pred CCChhHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhC
Q 005145 511 VPPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~ 550 (712)
++....+++.+|.++..+. ...+|+..|+..+..+|+.
T Consensus 75 --~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 75 --SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred --CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 5667888888988876543 3457788888877777654
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=3.7e-08 Score=87.18 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005145 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
..|++++.. +|........+|..+...|++++|+..+++++.+ .+....++..+|.++...|+
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---------DPYNSRYWLGLAACCQMLKE 66 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHH
Confidence 356677776 7888889999999999999999999999999887 34457789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
+++|+.++++++.+.+.. ...++.+|.+|...|++++|+..|++++++
T Consensus 67 ~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDD-------PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998875443 357889999999999999999999999986
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.83 E-value=1.4e-07 Score=86.87 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
..+..+..+|.++...|++++|+..|++++.+.+. +.....++.++|.++...|++++|+.+|++++.+.......
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 45788999999999999999999999999988532 22345688999999999999999999999999863221111
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005145 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 646 (712)
....+.++..+|..+...|++++|+..+.+++..+++.++..++....+..
T Consensus 109 -~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 109 -LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred -HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 122334445555555599999999999999999999998876655544433
No 141
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.83 E-value=2.1e-05 Score=85.62 Aligned_cols=341 Identities=12% Similarity=0.032 Sum_probs=212.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005145 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (712)
++....++..-+..+...|. +.+|+...-.|-+ + ...+..+...+.-.+..++..--..+.+. .+
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~----lP 407 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKA----LP 407 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHh----CC
Confidence 34556666666666666664 8888877554421 1 11233334445555555554433322222 11
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (712)
...-..+|. .....++......++.+|..+..++....+... +......+......|.+....|+++.|+++.+.
T Consensus 408 ~~~l~~~P~----Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 408 AELLASTPR----LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred HHHHhhCch----HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111112221 245567778889999999999998876643310 000122344455567888899999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (712)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (712)
++...+.... ...+.++..+|.+....|++++|+.+..++.+.....+.......+.+..+.++..+|+...| .-
T Consensus 484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~~ 558 (894)
T COG2909 484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--EQ 558 (894)
T ss_pred HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--HH
Confidence 9988876643 334557888999999999999999999999998888888888888888999999999933322 22
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH
Q 005145 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (712)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (712)
.++............+.........+.++...-+++.+..-....+++..... .........++.|+.+++..|++++
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHH
Confidence 22222222221112232222233333333333337777777777776654421 1122223334589999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (712)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (712)
|...+.+...+...........+.++.........+|+..+|.....+
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999999887765322224444444455556678999888877766
No 142
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.8e-06 Score=77.13 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
...+..|..-+..|....+|++|...+.+|.+..+.... ....+.++-..+.+...+..+.++..+|++|..++.+..
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334455666677888899999999999999987665431 344577888889999999999999999999999998863
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
.|+.+..-...+--....-++++|+.+|++++.+.... +........+...+.++.+...|.+|-..+.+-..+.
T Consensus 106 ----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 106 ----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred ----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 33333333344444556678999999999999998875 4445556677889999999999999999998877776
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.....-... ...+..+-.+|+-..+|..|..+|+...++ .+...++...++.+|-..|.....
T Consensus 181 ~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd~gD~ 243 (308)
T KOG1585|consen 181 DKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYDEGDI 243 (308)
T ss_pred HHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhccCCH
Confidence 665443322 344555556677777999999999987765 334567778888888888765443
No 143
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.4e-06 Score=87.57 Aligned_cols=410 Identities=15% Similarity=0.115 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--- 341 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 341 (712)
...+++.|.+|+....+..|++.............. .. .....+..-..+....+.++|+.++.-.-++....
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~---~~-aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES---SS-AASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 556788899999999999999887776654322111 11 12234445566666777788887765444332221
Q ss_pred -hCCC----------ChhH-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005145 342 -LGET----------DPRV-----------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (712)
Q Consensus 342 -~~~~----------~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la 399 (712)
.|.. .|.. ..+..+-...|....+...+..-...++.+.... +.++...+
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs 247 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS 247 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence 0100 1110 1122222333444445555544444444443321 23567778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCC------
Q 005145 400 LICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGE------ 468 (712)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~------ 468 (712)
..++..|+|.+|.+.+...- +....+ ..+. ....++++|.+++.+|.|.-+..+|.+|+. .+.++...
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 89999999999998875431 111111 1122 344568999999999999999999999996 44433211
Q ss_pred ---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc-------------
Q 005145 469 ---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE------------- 532 (712)
Q Consensus 469 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 532 (712)
.......++++.|..|...|+.-.|.++|.++...+.. .+..|..||.+.....+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---------nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---------NPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 01234678899999999999999999999999999876 25568888887654211
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHhC--------------------------
Q 005145 533 ------------------------------------LEQAIKLLQKALKIYNDA-------------------------- 550 (712)
Q Consensus 533 ------------------------------------~~~A~~~~~~al~~~~~~-------------------------- 550 (712)
.+=|.-+++.++-+.++.
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 233455566555443111
Q ss_pred --------CCC-----C---C--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005145 551 --------PGQ-----Q---S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (712)
Q Consensus 551 --------~~~-----~---~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (712)
.|+ + + ....++...+.+-..+|+.-.|+..-.+.++. +....++..|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~lS~~~kfL 548 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------ADLSKIYKFL 548 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hhhhhHHHHH
Confidence 000 0 0 12345667778888899999999888888875 2344566666
Q ss_pred HHHHH-----HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-cchhhhCCCChhHH--HHHHHHHHH
Q 005145 607 GLACV-----QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GREEKLGTANPDVD--DEKRRLAEL 678 (712)
Q Consensus 607 g~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~-g~~~~l~~~~p~~~--~~~~~la~~ 678 (712)
|.+|. -+.+..+|..++.--+---....++.+......|+.--.+..-. |+........++.+ ..+++||.+
T Consensus 549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a 628 (696)
T KOG2471|consen 549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA 628 (696)
T ss_pred HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence 66654 34444555444332111000000011111111111111111100 11111112233322 347889999
Q ss_pred HHHhccHHHHHHHHHHHHHHhccc-CCcC
Q 005145 679 LKEAGRVRSRKAQSLETLLDANSR-VNND 706 (712)
Q Consensus 679 ~~~~g~~~~A~~~~l~~~l~~~p~-i~~~ 706 (712)
|.-+|++++|+ ..+..+...-+. ++.+
T Consensus 629 ~alq~~~dqAk-~ll~~aatl~hs~v~~~ 656 (696)
T KOG2471|consen 629 LALQGHHDQAK-SLLTHAATLLHSLVNVQ 656 (696)
T ss_pred HHHhcccHHHH-HHHHHHHHhhhccccHH
Confidence 99999999998 888777666555 4443
No 144
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.80 E-value=0.00035 Score=76.41 Aligned_cols=266 Identities=10% Similarity=-0.012 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005145 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS-PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
.....+.......++.+|..++.++....+.... ......+......|.+....|+++.|+.+.+.++....... ...
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~ 495 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRS 495 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chh
Confidence 3445566777889999999999998877665322 12233344555678888999999999999999986544332 233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHhcCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES--KSYCENALRIYEKPV 508 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~~~~~ 508 (712)
...++..+|.+..-.|++++|..+.+++.++.+.... ......+....+.++..+|+...| ...|...-......
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q- 572 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ- 572 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-
Confidence 4567888999999999999999999999999887642 344556666778899999943333 22222222211110
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
...+.....+...+..++.+ ++.+..-....+.+.............++..|+.+++..|++++|...+.+...++
T Consensus 573 -~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 573 -KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred -cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 01111223333333334333 77777777777776555422223333344689999999999999999999998887
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005145 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (712)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 626 (712)
.... .+....+.++.........+|+..+|.....+.
T Consensus 649 ~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 649 LNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred cCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 6554 333444455555556667889999998888773
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=6.6e-08 Score=96.23 Aligned_cols=257 Identities=15% Similarity=0.090 Sum_probs=160.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005145 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK 307 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 307 (712)
.+.++-.|. |.+++.-++ +. .............+.++|..+|+++..+.-+... . .|.
T Consensus 8 vrn~fy~G~-Y~~~i~e~~--~~-------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---------~-~~~-- 65 (290)
T PF04733_consen 8 VRNQFYLGN-YQQCINEAS--LK-------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---------S-SPE-- 65 (290)
T ss_dssp HHHHHCTT--HHHHCHHHH--CH-------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---------S-SCC--
T ss_pred HHHHHHhhh-HHHHHHHhh--cc-------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---------C-Chh--
Confidence 345677775 877776554 11 2233445566677899999999988766544321 1 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
+.+...++..+....+-+.++..++.. +... ...........|.++...|++++|++++.+.-
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~--------- 129 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG--------- 129 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT---------
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC---------
Confidence 223455565555444554444443332 2121 11233455666788888999999998886541
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Q 005145 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~ 464 (712)
. ..+......++...++++.|.+.++... ...+ +...+....+++.+..| .+.+|...|++..+.
T Consensus 130 -~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~----~~~e--D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--- 196 (290)
T PF04733_consen 130 -S---LELLALAVQILLKMNRPDLAEKELKNMQ----QIDE--DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--- 196 (290)
T ss_dssp -C---HHHHHHHHHHHHHTT-HHHHHHHHHHHH----CCSC--CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---
T ss_pred -c---ccHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCC--cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---
Confidence 1 2245567788999999999999887654 2222 33333333444555555 689999999986543
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH-HHHHHHHHHH
Q 005145 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-EQAIKLLQKA 543 (712)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a 543 (712)
.+..+..++.++.++..+|+|++|...+.+++.. .+..+.++.+++.+....|+. +.+.+++.+.
T Consensus 197 -----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 197 -----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp -----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred -----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4455778999999999999999999999998754 334567899999999999998 5566677766
Q ss_pred HHHHHh
Q 005145 544 LKIYND 549 (712)
Q Consensus 544 l~~~~~ 549 (712)
....+.
T Consensus 263 ~~~~p~ 268 (290)
T PF04733_consen 263 KQSNPN 268 (290)
T ss_dssp HHHTTT
T ss_pred HHhCCC
Confidence 555443
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.78 E-value=9.8e-07 Score=78.85 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=96.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005145 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (712)
..++...+...+++.+.- .++.+....+...+|.+++..|++++|...|+.++... .+......+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence 578888887777776665 22345567888899999999999999999999999863 2244456778889
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (712)
|.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998652 1222334567789999999999999999999874
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.76 E-value=3.5e-06 Score=81.89 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
.++..|..+...|+|++|+..|++++... +..+....+.+.+|.+|+..+++++|+..+++.++..|....
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---- 104 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---- 104 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc----
Confidence 47889999999999999999999998874 234666778899999999999999999999999999877643
Q ss_pred HHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 005145 390 EEAADRRLMGLICETKG---------------DH---EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (712)
...+++.+|.++...+ +. .+|+..|++.+. ..++... ..+|
T Consensus 105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---~yP~S~y-----------------a~~A 163 (243)
T PRK10866 105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---GYPNSQY-----------------TTDA 163 (243)
T ss_pred -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---HCcCChh-----------------HHHH
Confidence 3557888887764443 11 234444444432 2222221 1222
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005145 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
...+..+ ....+.--..+|..|.+.|.|..|+.-++.+++.+.. .+....++..++..|...|
T Consensus 164 ~~rl~~l-----------~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 164 TKRLVFL-----------KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcC
Confidence 2222111 1122333447788899999999999999999988655 4556788889999999999
Q ss_pred cHHHHHHHHHH
Q 005145 532 ELEQAIKLLQK 542 (712)
Q Consensus 532 ~~~~A~~~~~~ 542 (712)
..++|..+...
T Consensus 227 ~~~~a~~~~~~ 237 (243)
T PRK10866 227 LNAQADKVAKI 237 (243)
T ss_pred ChHHHHHHHHH
Confidence 99888776543
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.74 E-value=4.6e-06 Score=81.04 Aligned_cols=179 Identities=14% Similarity=0.086 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
....++..|..++..|+|++|+..|++++... +..+....+...+|.+|++.+++++|+..+++.++....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence 34556778899999999999999999998872 235566677899999999999999999999999999554
Q ss_pred CCChhHHHHHHHHHHHHHHcc---------------c---HHHHHHHHHHHHHHHHhCCCCC----------CcHHHHHH
Q 005145 511 VPPEEIASGLTDVSSIYESMN---------------E---LEQAIKLLQKALKIYNDAPGQQ----------STVAGIEA 562 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~ 562 (712)
++....+++.+|.++...+ + ..+|+..|++.+..+|+..-.. ..++.--.
T Consensus 102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999998864443 2 3467778888777766541110 11222344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
.+|..|.+.|.|..|+.-++.+++-+. ..+....++..++..|..+|..++|......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 678899999999999999999887543 2344668999999999999999999876543
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.73 E-value=1.6e-07 Score=86.72 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.+..+.+++.+|.++...|++++|+.+|++++.+... .+....++..+|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5667888999999999999999999999999988433 3334678999999999999999999999999997554
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCC
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGN-------YSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~ 595 (712)
. ...+..+|.++...|+ ++.|+..++++++.++......
T Consensus 105 ~-------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 105 Q-------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred c-------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3 3456667777776554 5666666666666655544333
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=1e-06 Score=78.68 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
..+..+...+..++ +..+...+++.+.-+ +..+....+.+.+|.+++..|++++|+..|+.++... ++
T Consensus 13 ~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d 80 (145)
T PF09976_consen 13 ALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PD 80 (145)
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Confidence 34444555556765 888777677666542 3335667788889999999999999999999998753 22
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (712)
. .....+.+.||.++...|++++|+..++... ..+....++..+|.+|...|++++|+..|++++
T Consensus 81 ~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 P-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2 2234468899999999999999999996621 235566788899999999999999999999874
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=1.2e-06 Score=80.82 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
...+..+..++.+|.++...|++++|+.+|++++.+.+.. .....++..+|.++...|++++|+.++++++.+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3455678889999999999999999999999999876542 1234688999999999999999999999999862
Q ss_pred hCCCCChHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHHhcCCCChh
Q 005145 591 IGERKSAFFGVALNQMGLACVQR-------YSINEAVELFEEARSILEQECGPYHPD 640 (712)
Q Consensus 591 ~~~~~~~~~~~~~~~lg~~~~~~-------g~~~~A~~~~~~al~~~~~~~~~~~p~ 640 (712)
+.....+..+|.++... +++++|+..|+++++.+++....++.+
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 22245666777777665 457778888888888777776554433
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.69 E-value=2.7e-07 Score=95.51 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (712)
+...|..++..|+|++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+..+++++.+. +..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIELD--------PSL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCC
Confidence 5567888999999999999999999986654 4688999999999999999999999999972 234
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
..+++.+|.+|..+|++++|+.+|++++.+ +|+...+...++.+...+.
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999 8888888888888866553
No 153
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.6e-05 Score=72.68 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=135.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (712)
-.+.+++|.++|.++-.+++ ...+|..|-..|.++.......+...+.+..|...+.+
T Consensus 26 g~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c 83 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC 83 (288)
T ss_pred CCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 34578888888887765542 33445555556666655555556666667777777776
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005145 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (712)
|.+ ++..+|+.+++++++++...+. ....+..+..+|.+|..- .++++|+.+|+++-+.+.. .......-.++
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~ 157 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCL 157 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHH
Confidence 654 5999999999999999887752 334456677899999765 8999999999999998865 22223344567
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
...+..-...++|.+|+..|++.....-+..-.....-.-+..-|.+++...+.-.+...+++-.++
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 7778888889999999999998876544331112233334556677777767766665555555444
No 154
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.7e-06 Score=87.72 Aligned_cols=165 Identities=15% Similarity=0.071 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+....+.+..+..++..|++++|+..++..+.. .|++...+...+.++...++..+|.+.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 455677888899999999999999999997776 8888899999999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
.|.......++|..|...|++.+|+..++..+.-.++. ...|..||..|..+|+..+|...+
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A~------- 431 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLAR------- 431 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHHH-------
Confidence 34446778899999999999999999998887765554 358889999999999887765443
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005145 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (712)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 646 (712)
+..|.-.|++++|+..+..+.+. .+.+.|+.+.+-.
T Consensus 432 ------------------AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~da 467 (484)
T COG4783 432 ------------------AEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADA 467 (484)
T ss_pred ------------------HHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHH
Confidence 34455578999999998888776 3334555544433
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.68 E-value=2.8e-07 Score=95.34 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+...|..++..|+|++|+.+|.+++.+ .|....++..+|.+|..+|++++|+..+++++.+ .|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------~P 67 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---------DP 67 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------Cc
Confidence 455688889999999999999999998 7888899999999999999999999999999999 34
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
....+++.+|.+|..+|++++|+..|++++.+.+..
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 457789999999999999999999999999987654
No 156
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1.6e-07 Score=93.55 Aligned_cols=249 Identities=15% Similarity=0.101 Sum_probs=158.0
Q ss_pred cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005145 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG 279 (712)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g 279 (712)
.|+|.+++..........+........+.+.++..|+ ++.++.- ... .. .|. ..+...++..+...+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~-~~~vl~e-------i~~---~~-~~~-l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQ-YDSVLSE-------IKK---SS-SPE-LQAVRLLAEYLSSPS 80 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT--HHHHHHH-------S-T---TS-SCC-CHHHHHHHHHHCTST
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCC-hhHHHHH-------hcc---CC-Chh-HHHHHHHHHHHhCcc
Confidence 4677777743333333334456677888899999997 5544322 211 11 122 234455566665545
Q ss_pred CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (712)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (712)
+.+.++.-++..+.-. .+..++. .....|.++...|++++|+..+.+. ...++......+
T Consensus 81 ~~e~~l~~l~~~~~~~---~~~~~~~----~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi 140 (290)
T PF04733_consen 81 DKESALEELKELLADQ---AGESNEI----VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQI 140 (290)
T ss_dssp THHCHHHHHHHCCCTS------CHHH----HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhc---cccccHH----HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHH
Confidence 6677777666554332 1112221 3566778888899999999888764 112445566778
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (712)
+...++++.|.+.++.+.++. + +.. .+....+++....| .+.+|...|++.. ...+....+++.
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~----e-D~~---l~qLa~awv~l~~g~e~~~~A~y~f~El~------~~~~~t~~~lng 206 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQID----E-DSI---LTQLAEAWVNLATGGEKYQDAFYIFEELS------DKFGSTPKLLNG 206 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCS----C-CHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHH------CCS--SHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC----C-cHH---HHHHHHHHHHHHhCchhHHHHHHHHHHHH------hccCCCHHHHHH
Confidence 999999999999887764332 1 111 12233344555555 5899999998864 223345677889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005145 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRI 503 (712)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 503 (712)
+|.++..+|+|++|...+++++.. .+....++.+++.+....|+. +.+.+++.+....
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999998865 677788999999999999998 5566677766655
No 157
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=9.6e-07 Score=89.43 Aligned_cols=148 Identities=19% Similarity=0.130 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
.+++..+..++..|++++|+..+...+ ...|.....+...+.++...++..+|.+.+++++.. .|.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLI------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence 478888999999999999999999866 456677788888999999999999999999999998 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005145 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (712)
......++|..|...|++.+|+..++..+.- .|+.+..|..||..|..+|+..+|...
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~---------~p~dp~~w~~LAqay~~~g~~~~a~~A------------- 430 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN---------DPEDPNGWDLLAQAYAELGNRAEALLA------------- 430 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---------CCCCchHHHHHHHHHHHhCchHHHHHH-------------
Confidence 8889999999999999999999999988776 455678899999999999998776543
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.++.|...|++++|+..+..+.+.
T Consensus 431 -----------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 355677789999999999988775
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.64 E-value=0.00031 Score=69.26 Aligned_cols=302 Identities=15% Similarity=0.076 Sum_probs=206.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH
Q 005145 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (712)
Q Consensus 227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (712)
.|.+....|| -..|..+..++-+++. .+.+ +.++..-+..-...|+|+.|.+-|+-.+.. |..
T Consensus 90 tGliAagAGd-a~lARkmt~~~~~lls-----sDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEt 152 (531)
T COG3898 90 TGLIAAGAGD-ASLARKMTARASKLLS-----SDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PET 152 (531)
T ss_pred hhhhhhccCc-hHHHHHHHHHHHhhhh-----ccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHH
Confidence 3444445555 6777777777766552 2222 223344467777789999999999987654 233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
....+..|-.--...|..+.|+.+.+.+... -|....++...-...+..|+|+.|+++.+.......-..+.
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 3334445555556789999999999999887 46777777777788889999999999998876543222211
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005145 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (712)
.....+..+..-+.. ...-+...|...-.++. +..++.+-.-..-+..++..|+..++-.+++.+.+.
T Consensus 225 aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~------KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----- 292 (531)
T COG3898 225 AERSRAVLLTAKAMS-LLDADPASARDDALEAN------KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA----- 292 (531)
T ss_pred HHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHh------hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence 111122222222222 22345667777666665 455666666677789999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005145 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
+.||... .+|....--+.++.-++++-.+..- .++.......++..-+..|++..|..-.+.+...
T Consensus 293 -ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 -EPHPDIA-------LLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred -CCChHHH-------HHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 2366544 3444444445566667777666332 4556788889999999999999999988888877
Q ss_pred HHhCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 005145 547 YNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK 587 (712)
Q Consensus 547 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 587 (712)
.+.. .++..|+.+-... |+-.++...+-+++..
T Consensus 359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6554 4777888887766 9999999999999874
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=5.8e-07 Score=77.40 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
.+++.+|..+...|++++|+..|.+++... ++++....+++.+|.++...|++++|+.+|++++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------ 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK------ 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC------
Confidence 467889999999999999999999998761 223444678899999999999999999999999987433
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
++....++..+|.++...|++++|+.++.+++...+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 33346778999999999999999999999999886543
No 160
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=7.9e-06 Score=74.56 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=129.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005145 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (712)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (712)
+.-.+.+++|.++|.++- ..|....+|..|-..|.++-++..+.+. ..+.+..|...+
T Consensus 24 fgg~~k~eeAadl~~~Aa--------------------n~yklaK~w~~AG~aflkaA~~h~k~~s--khDaat~YveA~ 81 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA--------------------NMYKLAKNWSAAGDAFLKAADLHLKAGS--KHDAATTYVEAA 81 (288)
T ss_pred cCCCcchHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHH
Confidence 334458888888888774 3444455566666666666666555442 334455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 005145 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (712)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (712)
.+|.+ ++..+|+.+++++++++..+. .....+.-+..+|.+|... .++++|+.+|+++-+.+... ........+
T Consensus 82 ~cykk-~~~~eAv~cL~~aieIyt~~G---rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-es~ssANKC 156 (288)
T KOG1586|consen 82 NCYKK-VDPEEAVNCLEKAIEIYTDMG---RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-ESVSSANKC 156 (288)
T ss_pred HHhhc-cChHHHHHHHHHHHHHHHhhh---HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-hhhhhHHHH
Confidence 66554 488899999999999887742 1222355667888888875 89999999999999887653 222334456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+...+..-...++|.+|+..|++.....-. ..-. ...-..++.-|.|++-..+.-.+...+++..++
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~--n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLD--NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 777788888889999999999987653211 1100 111223455566777667777666666666555
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=1.1e-06 Score=75.64 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
.+++.+|..+...|++++|+..|.+++...+.. .....+++.+|.++...|++++|+.+|++++... +..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSP 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCC
Confidence 467899999999999999999999998765432 2234578889999999999999999999998753 1222
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 598 FFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
....++..+|.++...|++++|+.+|++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 23468999999999999999999999999998
No 162
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=3.2e-05 Score=87.33 Aligned_cols=210 Identities=16% Similarity=0.142 Sum_probs=165.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
+|+....|...-..+...++.++|.+.+++||....-...........+|.+|- ..-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE---n~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE---NAYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH---HhhCcHHHHHHHHHHHHHhc---
Confidence 688888888888889999999999999999997652222212222333444443 34466677778888886432
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
+...+|..|..+|...+.+++|.++|+..++.+. ....+|..+|..++++.+-+.|..++.+|+....
T Consensus 1528 ----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1528 ----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred ----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 2346788899999999999999999999998743 3467899999999999999999999999999865
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (712)
+. .........|.+.++.|+.+.+..+|+-.+..+|.. ...|..+...-.+.|+.+.+..+|++++
T Consensus 1596 k~-------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1596 KQ-------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hh-------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 41 246677888999999999999999999998877654 2477777888889999999999999998
Q ss_pred HH
Q 005145 586 SK 587 (712)
Q Consensus 586 ~~ 587 (712)
.+
T Consensus 1662 ~l 1663 (1710)
T KOG1070|consen 1662 EL 1663 (1710)
T ss_pred hc
Confidence 85
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=4.4e-07 Score=72.44 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=66.8
Q ss_pred cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (712)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (712)
.|+|+.|+.+++++++..+ ..+ ....++.+|.+|+..|+|++|+.++++ ... ++......+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 6899999999999999863 221 223577899999999999999999999 444 345567777889
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 005145 358 EAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~a 376 (712)
.+++.+|++++|+++++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.53 E-value=5.4e-07 Score=71.91 Aligned_cols=84 Identities=25% Similarity=0.283 Sum_probs=67.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005145 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (712)
.+|+|+.|+.+++++++.... .+ ....+..+|.+|+..|++++|+.++++ .... +........+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---------~~~~~~~~l~ 64 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---------PSNPDIHYLL 64 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---------HCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---------CCCHHHHHHH
Confidence 368999999999999998221 12 566788899999999999999999999 5442 2346667788
Q ss_pred HHHHHHcccHHHHHHHHHHH
Q 005145 524 SSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a 543 (712)
|.++..+|++++|++.|+++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 165
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.6e-06 Score=84.59 Aligned_cols=337 Identities=18% Similarity=0.161 Sum_probs=190.8
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHHHcCCHhHHHHHHHHhhc-hh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL--VMCLHVIAAIYCSLGQYNEAIPVLEQSIE-IP 295 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~~al~-~~ 295 (712)
+.+..++..++.++..|+ |.+|...+...- +.+.. .+...|+. ...+.+||.++++.|.|..+..+|.+|++ ..
T Consensus 238 ~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sn-i~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGN-HPKAMKLLLVSN-IHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred CCcHHHHHHHHHHHHhcc-hHHHHHHHHhcc-ccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 556677888889999986 888887765431 11111 12223333 34456899999999999999999999996 22
Q ss_pred hhhh-c--ccc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC--
Q 005145 296 VIEE-G--QEH-----ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ-- 365 (712)
Q Consensus 296 ~~~~-~--~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-- 365 (712)
.... + +.. ......++++.|..|...|+.-.|.++|.+++..+.. ....|..||.+++...+
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCima~~~~ 386 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCIMALQKG 386 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHhhhh
Confidence 1111 1 000 0113456899999999999999999999999999744 34678888888775321
Q ss_pred -HHHHHHHHHH--------------HHHHHHhcCC---------C-CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005145 366 -FSEAQKFCQM--------------ALDIHKDNGS---------P-ASLEEAADRRLMGLICETK-GDHEAALEHLVLAS 419 (712)
Q Consensus 366 -~~~A~~~~~~--------------al~~~~~~~~---------~-~~~~~a~~~~~la~~~~~~-g~~~~A~~~~~~al 419 (712)
.++......+ .+-+ .++.. + .....+.+...-|..+... .++.. .+.-+.
T Consensus 387 l~ee~~~s~s~~~i~~~vig~g~rr~~m~-~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~---~~~~a~ 462 (696)
T KOG2471|consen 387 LLEEGNSSLSRSEIRVHVIGKGNRRQLMI-EENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGS---ILSVAM 462 (696)
T ss_pred hhhhccCCcccccceeeeecccchhheee-cccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchh---hhhhhc
Confidence 1111111111 0000 00000 0 1111111111111111100 11100 000000
Q ss_pred HHHHh------------------CC--------CC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 420 MTMIA------------------ND--------QD--------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 420 ~~~~~------------------~~--------~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
..-+. .+ .. .....++.+.+.+-..+|+.-.|+....+.++.
T Consensus 463 ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---- 538 (696)
T KOG2471|consen 463 NSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---- 538 (696)
T ss_pred cccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh----
Confidence 00000 00 00 123556778888888999999999999988875
Q ss_pred cCCCCHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------HH------Hhc-------C--CCC--------C
Q 005145 466 KGENHPAVASVFVRLADMY-----NRTGKLRESKSYCENAL------RI------YEK-------P--VPG--------V 511 (712)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~~------~~~-------~--~~~--------~ 511 (712)
+....++..||.+| +.+.+..+|...+.--+ .+ +.. . ..+ .
T Consensus 539 -----~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~s 613 (696)
T KOG2471|consen 539 -----ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLS 613 (696)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCC
Confidence 44455666666555 45677777776654311 00 000 0 000 0
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (712)
........+++||.++.-+|++++|..++..|..+....... .+......+-.+.|+...|...+++.
T Consensus 614 v~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~-----~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 614 VEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV-----QATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH-----HHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 111234567899999999999999999999999887743221 12222223445678888888777664
No 166
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=5.4e-05 Score=85.58 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005145 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (712)
Q Consensus 263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (712)
..+..|...-......++.++|.+.+++||....-.. ....+.+|..+-++...-|.-+.-.+.|++|.+.+
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---- 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---- 1527 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----
Confidence 3344454555667788999999999999987641111 11233445555555555667777888888888874
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
+...+|..|..+|...+.+++|.++++..++.+.+. ..+|..+|..++.+.+-+.|...+.+|+..+
T Consensus 1528 -----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1528 -----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred -----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 334678889999999999999999999999888633 3378899999999999999999999998655
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
.. ..........|++-++.|+.+.+..+|+..+.. +|.....|.-+...-.+.|+.+.+..+|++++.
T Consensus 1595 Pk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1595 PK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred ch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 43 223456667789999999999999999998887 888888999999999999999999999999988
Q ss_pred H
Q 005145 503 I 503 (712)
Q Consensus 503 ~ 503 (712)
+
T Consensus 1663 l 1663 (1710)
T KOG1070|consen 1663 L 1663 (1710)
T ss_pred c
Confidence 7
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.52 E-value=6.1e-07 Score=73.29 Aligned_cols=97 Identities=30% Similarity=0.423 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005145 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
+++.+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence 4678899999999999999999999987 5555578999999999999999999999999987432
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
...++..+|.++...|++++|..++.+++...
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23678899999999999999999999987653
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.6e-06 Score=84.72 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=112.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005145 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 292 (712)
..+...-..|..+++.|+ |..|...|++|+..+......+.. .....++.+++.||.++++|.+|+..+.++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345566778999999997 999999999999998643322111 2235688999999999999999999999999
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHH-HH
Q 005145 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK 371 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 371 (712)
.+. +++. .++++.|.++..+|+|+.|+..|++++++ .|....+...|..+.....++.+. .+
T Consensus 285 e~~-----~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 285 ELD-----PNNV----KALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hcC-----CCch----hHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 4443 35999999999999999999999999999 577777777777776665555443 56
Q ss_pred HHHHHHHHHH
Q 005145 372 FCQMALDIHK 381 (712)
Q Consensus 372 ~~~~al~~~~ 381 (712)
.|..++....
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 6666665543
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.50 E-value=7.2e-07 Score=68.16 Aligned_cols=64 Identities=27% Similarity=0.408 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRI 503 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 503 (712)
+.++..+|.+++..|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999 8999999999999999999 799999999999987
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.4e-06 Score=85.00 Aligned_cols=138 Identities=15% Similarity=0.166 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQD---------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (712)
....-|..|+..|+|..|...|++|+..+...... .....++.|++.++.++++|.+|+....++|.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 35567899999999999999999998776532211 123457899999999999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH-HHHHHHHH
Q 005145 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-AIKLLQKA 543 (712)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 543 (712)
.+.+..+++..|.++..+|+|+.|+..|++++++. |..-.+...|..+..+..++.+ ..+.|..+
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---------P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE---------PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999993 3334455566666555544443 36667766
Q ss_pred HHHHH
Q 005145 544 LKIYN 548 (712)
Q Consensus 544 l~~~~ 548 (712)
+....
T Consensus 353 F~k~~ 357 (397)
T KOG0543|consen 353 FAKLA 357 (397)
T ss_pred hhccc
Confidence 65544
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.49 E-value=6.3e-07 Score=68.49 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Q 005145 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIH 380 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 380 (712)
..|..+|.++...|++++|+.+|.+++++ +|....+++++|.++..+| ++++|+..+++++++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45899999999999999999999999999 7899999999999999999 7999999999999875
No 172
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.48 E-value=3.5e-05 Score=87.37 Aligned_cols=387 Identities=13% Similarity=0.092 Sum_probs=253.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
+.++..+...+++.+|...-++++++.+..++.+.|+...-+..++..++....+.+|+.+-.+++.+.....+..++..
T Consensus 669 ~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~ 748 (1236)
T KOG1839|consen 669 YSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNT 748 (1236)
T ss_pred ccCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccc
Confidence 33477778889999999999999999999999999999999999998888888899999999999998877766555544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHHH---cCCHHHHHHHHHHHHHHHHH--h
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD-CSIGDTYLS---LSRYDEAGFAYQKALTAFKT--N 465 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~la~~~~~---~g~~~~A~~~~~~al~~~~~--~ 465 (712)
+..+.+....-...| +-++.++..+++.+...-.......+. ..+..++.- ......+..-.-++..+..+ .
T Consensus 749 ~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~ 826 (1236)
T KOG1839|consen 749 AATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAA 826 (1236)
T ss_pred cchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhc
Confidence 443333333322223 556666666655443321111111111 122221111 12222221111111110000 0
Q ss_pred cCCCCH---------------------------HHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhcCC--CC---
Q 005145 466 KGENHP---------------------------AVASVFVRLADMYNRTGKLRESKS---YCENALRIYEKPV--PG--- 510 (712)
Q Consensus 466 ~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~~--~~--- 510 (712)
.+...+ ........+..+....|...-+.. .+..-+....+.. ..
T Consensus 827 ~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ 906 (1236)
T KOG1839|consen 827 AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEP 906 (1236)
T ss_pred cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCC
Confidence 000000 001111111222222222111111 1111111100000 00
Q ss_pred -----------------CCCh--hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH
Q 005145 511 -----------------VPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM 570 (712)
Q Consensus 511 -----------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~ 570 (712)
...| ..+.-....+......|.+.+|.+ .-+++.+..+..+.. +.++..|..++.++.+
T Consensus 907 ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~ 985 (1236)
T KOG1839|consen 907 KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR 985 (1236)
T ss_pred CCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh
Confidence 0011 122334455666677888888988 888888887665654 5788899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005145 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (712)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 650 (712)
.|++++|+.+-.+|.-+.+.....+++.....+.+++......++...|+..+.+++.+..=.+|+.||..+....++..
T Consensus 986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen 986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence 99999999999999999998888888888899999999999999999999999999999888899999999999999999
Q ss_pred HHHHccc---------------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 651 TYDAIGR---------------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 651 ~~~~~g~---------------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
++...++ ...+++..-.+..++..+++++...|+++.|. ...+......+.
T Consensus 1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL-EHEKVTYGIYKE 1131 (1236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH-HHHhhHHHHHHH
Confidence 8777666 45556677778888999999999999999998 777777766655
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.44 E-value=5.2e-06 Score=70.12 Aligned_cols=102 Identities=23% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
.+.+.+|.++-..|+.++|+.+|++++.. +...+....+++.+|..+..+|++++|+..+++++..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD------ 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------
Confidence 45788999999999999999999999885 3345667789999999999999999999999999876422
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.+........++.++...|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222455567788999999999999999877664
No 174
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=6.1e-05 Score=68.10 Aligned_cols=205 Identities=17% Similarity=0.075 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
.+.+..++..|..|-..|-+.-|.--|.+++.+. |+.|. +++.||..+...|+|+.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-----P~m~~----vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-----PDMPE----VFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-----CCcHH----HHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4567788889999999999999999999999997 55544 4899999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
+|..-.+..+.|..++.-|++.-|.+-+.+-....+ .++..+ .|.. +-...-+..+|...+.+-.
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~-----~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~-- 193 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP-----NDPFRS-LWLY---LNEQKLDPKQAKTNLKQRA-- 193 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC-----CChHHH-HHHH---HHHhhCCHHHHHHHHHHHH--
Confidence 788888999999999999999999988766554332 223211 1111 1223446667766553321
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
. +.+.. -+.++. +-+..|+..+ ...++++....+.. ..-......+++.||..+...|+.++|..+|+-++
T Consensus 194 -~--~~d~e-~WG~~i---V~~yLgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 194 -E--KSDKE-QWGWNI---VEFYLGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred -H--hccHh-hhhHHH---HHHHHhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 11111 111111 1112233211 12233333221110 00023346788999999999999999999999887
Q ss_pred HH
Q 005145 502 RI 503 (712)
Q Consensus 502 ~~ 503 (712)
..
T Consensus 265 an 266 (297)
T COG4785 265 AN 266 (297)
T ss_pred HH
Confidence 65
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00013 Score=68.47 Aligned_cols=236 Identities=14% Similarity=0.074 Sum_probs=146.6
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005145 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (712)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (712)
-++..|.|..++...++.-... ........+.+.|..+|.+...+.-...+ . .+.. .+...+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~---------~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~l-qAvr~~ 78 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK---------TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATPL-QAVRLL 78 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc---------chhHHHHHHHHHHHHcccccccccccccc-------c-CChH-HHHHHH
Confidence 3455677776665544432211 11224556777788888876554433221 1 1222 223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005145 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
+.....-++.++-+.-..+-+.. ............-|.+|...|++++|+........+ .
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E 138 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E 138 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence 44444444444433333332221 112223344555678899999999999888773333 2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 005145 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
+...-..++.++.+.+-|.+.++++.++..+. ++..||..+... +.+..|.-+|++.- +.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc
Confidence 33334567888889999999999988876554 555666666543 34555655555543 32
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.++ ....++.++.++..+|+|++|...++.++.- ++....++.|+..+-...|.
T Consensus 203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGK 256 (299)
T ss_pred cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCC
Confidence 222 2467889999999999999999999999987 77788888899888888876
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=2.2e-06 Score=69.93 Aligned_cols=96 Identities=29% Similarity=0.361 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
++..+|.++...|++++|+..+.+++.. .+....++..+|.++...+++++|+.++++++.. .+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DPDN 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCcc
Confidence 4778999999999999999999998743 3333477889999999999999999999999987 4555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..++..+|.++...|++++|..++.+++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 578999999999999999999999998765
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.40 E-value=6.2e-06 Score=69.67 Aligned_cols=102 Identities=25% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005145 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (712)
.+++.+|.++-..|+.++|+.+|++++... ...+ ....++..+|.++..+|++++|+..+++++..+ ++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-----LSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 357789999999999999999999999853 2222 234578999999999999999999999998762 22
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
++....+...++.++...|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233666777789999999999999999877764
No 178
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.37 E-value=0.00078 Score=72.38 Aligned_cols=187 Identities=13% Similarity=0.035 Sum_probs=130.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005145 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYN----RTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
-.|+-+.++..+.++.+. ..+ ..|... ..|+.....+. .....+.|.+++......+ |.-
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---------P~s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---------PNS 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------CCc
Confidence 468999999999887652 111 111111 11111111111 2345677888888777774 334
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005145 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
+..+...|+++...|+.++|++.|++++...... . .....+++.+++++..+.+|++|..+|.+..+. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-K--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-H--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 6778899999999999999999999988543332 1 122346889999999999999999999998773 23
Q ss_pred hHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005145 597 AFFGVALNQMGLACVQRYSI-------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 653 (712)
...+...+..|.++...|+. ++|.++|.++-.+..+..|..-|-..-+.........
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~ 400 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK 400 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence 44566777888999999999 9999999999999888777666755555544444333
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.34 E-value=8.8e-06 Score=79.60 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=89.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005145 433 SVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 433 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
...+..|..+ +..|+|++|+..|+..+..+. +.+....+++.+|.+|+..|++++|+..|.+++..+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-----~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-----DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 4455556654 567999999999999998822 23444689999999999999999999999999998654
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
++....+++.+|.++..+|++++|...|+++++.+++.
T Consensus 213 -s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 213 -SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred -CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56678899999999999999999999999999887754
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.32 E-value=0.0011 Score=64.35 Aligned_cols=231 Identities=28% Similarity=0.330 Sum_probs=175.3
Q ss_pred cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (712)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (712)
.+.+..+...+...+..... . .........+..+...+.+..+...+...+.. ...+.....+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPN-----S--DLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc-----c--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHH
Confidence 45666677777766655311 0 01234788889999999999999999998864 01467778889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005145 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (712)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (712)
..+...+++..++..+..++........ .....+. ++...|+++.|...+.+++. . ..........+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~~ 171 (291)
T COG0457 103 LLLEALGKYEEALELLEKALALDPDPDL--------AEALLALGALYELGDYEEALELYEKALE-L--DPELNELAEALL 171 (291)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCCcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCCccchHHHHH
Confidence 9999999999999999998876544311 2334444 89999999999999999853 1 110124556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005145 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (712)
..+..+...++++.|+..+.+++.. .+. ....+..++..+...+++..|...+..++.....
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 234 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------- 234 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------
Confidence 6677788899999999999999998 555 5788999999999999999999999999998432
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
....+..++..+...+.++++...+.+++...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3456677777777777899999999999887654
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=6.1e-06 Score=80.69 Aligned_cols=97 Identities=8% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005145 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (712)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (712)
+..|+|++|+..|+..+... |+.+. ...+++.+|.+|+..|++++|+..|++++..+ ++++....+++.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-----P~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~k 222 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-----PDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFK 222 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-----cCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHH
Confidence 45699999999999999887 44432 23468999999999999999999999999885 346788999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 356 LAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
+|.++...|++++|...|+++++.++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999888654
No 182
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=0.00047 Score=64.55 Aligned_cols=279 Identities=16% Similarity=0.133 Sum_probs=182.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005145 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
..+.++|+.-|++.+.+-. .....-..++-.+..+++.+++|++-...|.+.+...+.....+... .+.+.+-..-
T Consensus 40 e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi 115 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI 115 (440)
T ss_pred ccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence 3478999999999886432 22233446777888999999999999999999999877665444332 1222222222
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----CcHHH
Q 005145 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----STVAG 559 (712)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 559 (712)
....+.+--..+|+..+...+.. .+......+-..||.+|+..++|.+-.+.+.+.-..+....|.. ..+..
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdA---KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDA---KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhh---hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 23444455556666666655442 11222334556899999999999998888888777776554443 25566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005145 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 639 (712)
+|..-..+|..+.+-.+-..+|++++.+-..+ ++|...+.+...=|..+.+.|++++|-.-|-+|..-+.+.. .|
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI--PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG---sp 267 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAI--PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG---SP 267 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccC--CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC---Cc
Confidence 77777788999999888889999999875543 34444455555556788899999999988888877665543 34
Q ss_pred hhHH--HHHHHHHHHHHccc------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 640 DTLG--VYSNLAGTYDAIGR------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 640 ~~~~--~~~~La~~~~~~g~------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.... -|.-||..+...|- +.+--..+|+.. +..+|..+|.... + ..|+++++.+..
T Consensus 268 RRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIl-AMTnlv~aYQ~Nd-----I-~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEIL-AMTNLVAAYQNND-----I-IEFERILKSNRS 331 (440)
T ss_pred chhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHH-HHHHHHHHHhccc-----H-HHHHHHHHhhhc
Confidence 4333 35566777777665 222224555544 4556666664321 2 556677766655
No 183
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.30 E-value=0.0014 Score=63.44 Aligned_cols=226 Identities=24% Similarity=0.318 Sum_probs=168.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005145 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (712)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~ 400 (712)
.+.+..+...+..++..... ..........+..+...+.+..+...+...+.. .........+..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 35555666666665554210 023567788889999999999999999988864 011223457888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD-TYLSLSRYDEAGFAYQKALTAFKTNKGENHP---AVASV 476 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~ 476 (712)
.+...+++..++..+..++.... .........+. ++...|+++.|...+.+++.. .+ .....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~ 169 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDP------DPDLAEALLALGALYELGDYEEALELYEKALEL--------DPELNELAEA 169 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCC------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCccchHHH
Confidence 99999999999999988863211 11222333344 899999999999999999664 22 45666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005145 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (712)
+..++..+...++++.|+..+.+++...... ....+..++..+...++++.|+..+..++...+.
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 234 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------- 234 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------
Confidence 6777777889999999999999999984331 4667889999999999999999999999988665
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
....+..++..+...+.++++...+.+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345666777777778899999999999885
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=4e-05 Score=69.26 Aligned_cols=203 Identities=16% Similarity=0.066 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
..+..++..|..|-..|-+.-|.--|.+++ ...|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaL------ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-------- 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQAL------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-------- 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhh------hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence 345567778888888898999998898888 457888999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL-QKALKIYN 548 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~ 548 (712)
+|..-.+..+.|..++--|++.-|.+-+.+-.+- ...+|... .|..+- ...-++.+|...+ +++.....
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhccH
Confidence 8888889999999999999999998877665544 22344322 222221 2234666776544 34443332
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
...| ...+-+. +|+..+ ...++++.+..+. ...-...+..+++.||..+...|+.++|..+|+-|+.
T Consensus 199 e~WG----~~iV~~y-------LgkiS~-e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWG----WNIVEFY-------LGKISE-ETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhh----HHHHHHH-------HhhccH-HHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2211 1111122 233221 1233333332221 0111133557899999999999999999999998876
Q ss_pred H
Q 005145 629 I 629 (712)
Q Consensus 629 ~ 629 (712)
-
T Consensus 266 n 266 (297)
T COG4785 266 N 266 (297)
T ss_pred H
Confidence 4
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.27 E-value=0.0061 Score=60.49 Aligned_cols=299 Identities=15% Similarity=0.061 Sum_probs=206.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
-|.+..-.|+-..|...-.++-.+... ...|. ++..-++.-...|+++.|.+-|+.++.. |+.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llss---DqepL----IhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtR 153 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSS---DQEPL----IHLLEAQAALLEGDYEDARKKFEAMLDD---------PETR 153 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhc---cchHH----HHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHHH
Confidence 477777789999999998888755421 22222 3566677888899999999999987764 4432
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 351 -ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 351 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
.-+..|-.--...|..+.|+.+.+++-...+... .+....-...+..|+++.|+++.+..........+..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--------WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--------WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--------hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 2233333344578999999999999988876553 1333344456788999999999987754433333222
Q ss_pred h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 430 E--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 430 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
. .+..+...+... ...+...|.....+++++ .|+.+..-..-+..+++.|+..++-.+++.+-+.
T Consensus 226 eR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---- 292 (531)
T COG3898 226 ERSRAVLLTAKAMSL-LDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---- 292 (531)
T ss_pred HHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence 2 222333333322 234678888888888888 7777888888899999999999999999888775
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
..||.+...| ++.+.| +.++.-++++-.+..-. +.........+...+.-|+|..|..--+.+..+
T Consensus 293 ---ePHP~ia~lY-----~~ar~g--dta~dRlkRa~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 ---EPHPDIALLY-----VRARSG--DTALDRLKRAKKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred ---CCChHHHHHH-----HHhcCC--CcHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 2366654333 233444 45666677766654322 223456677888899999999998888777764
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 005145 588 LRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSI 629 (712)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 629 (712)
. + ...++..|+.+-... |+-.++..++-+++..
T Consensus 359 ~-------p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 A-------P--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred C-------c--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2 1 236778888888766 9999999999998874
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=2.9e-05 Score=68.12 Aligned_cols=103 Identities=9% Similarity=-0.003 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
+.........+..|.-++..|++++|...|+-..-. ++.....+..||.++..+++|++|+..|..+..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455666777888999999999999999999887776 667778899999999999999999999999988743
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
. + +...+..|.+|+.+|+.+.|+..|+.++.
T Consensus 103 ~------d---p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 N------D---YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred C------C---CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2 2 23377899999999999999999999987
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=3.1e-06 Score=63.70 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+.+|..+...|++++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++++.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 35789999999999999999999987 7899999999999999999999999999999987654
No 188
>PRK11906 transcriptional regulator; Provisional
Probab=98.23 E-value=5.2e-05 Score=77.68 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HHHHHHhCCCChhHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q 005145 311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM 375 (712)
Q Consensus 311 ~~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 375 (712)
++..|......+. .+.|+.+|.+|+ .+ +|..+.+|..++.|++.. ....+|.++.++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4666666655543 467888899988 55 789999999999998865 234567777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (712)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (712)
|+++.+.. +.++..+|.+....++++.|...|++|+ ...|..+.+++..|.+....|+.++|...+
T Consensus 330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~------~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAK------IHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHh------hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77776443 4588999999999999999999999998 468889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 005145 456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCEN 499 (712)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 499 (712)
++++++ .|....+-...-.+ .+.....++|+.+|-+
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999998 66544433332233 3344557777777654
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.22 E-value=7.7e-05 Score=61.62 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
...+-..|..+...|+ .+.|++.|.+++.+. |..+.+|.+.+..+.-+|+.++|+.-+++++++..
T Consensus 43 S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~---------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag---- 108 (175)
T KOG4555|consen 43 SRELELKAIALAEAGD-LDGALELFGQALCLA---------PERASAYNNRAQALRLQGDDEEALDDLNKALELAG---- 108 (175)
T ss_pred HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhc---------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----
Confidence 3445566777778887 999999999999987 66788999999999999999999999999999862
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
+. ....-.++...|.+|..+|+-+.|..-|+.+.++
T Consensus 109 ~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 109 DQ-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cc-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 22 2334557899999999999999999999999877
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00065 Score=63.84 Aligned_cols=246 Identities=15% Similarity=0.104 Sum_probs=150.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHH
Q 005145 229 RELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKF 308 (712)
Q Consensus 229 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 308 (712)
+.++-.|. |..++....+.-. .. ........+.+.|..+|++...+.-...+ ... ..
T Consensus 16 Rn~fY~Gn-yq~~ine~~~~~~-------~~---~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~~~---~l 72 (299)
T KOG3081|consen 16 RNYFYLGN-YQQCINEAEKFSS-------SK---TDVELDVYMYRAYLALGQYQIVISEIKEG---------KAT---PL 72 (299)
T ss_pred HHHHHhhH-HHHHHHHHHhhcc-------cc---chhHHHHHHHHHHHHcccccccccccccc---------cCC---hH
Confidence 44556664 7666655443321 11 22334445788888899887655433322 111 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005145 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (712)
.+...++.....-++.+.-+.-..+.+.. .........+..-|.+|...|++++|++.......+-
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-------- 138 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-------- 138 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--------
Confidence 23555666655555555544444433322 1122233444556788899999999999887643332
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 005145 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 464 (712)
+...-..++.+..+++-|...+++...+ .+ -.++..||..+.. .+.+.+|.-+|++.-+.
T Consensus 139 -----~~Al~VqI~lk~~r~d~A~~~lk~mq~i----de----d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--- 202 (299)
T KOG3081|consen 139 -----AAALNVQILLKMHRFDLAEKELKKMQQI----DE----DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--- 202 (299)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHcc----ch----HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---
Confidence 2333445677777888888777766522 11 2334445554443 34567777777765543
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005145 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
.+.....++.++.++..+|+|++|...++.++.... ..+.++.++-.+-...|...++..-+-
T Consensus 203 -----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~---------~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 203 -----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA---------KDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred -----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC---------CCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 455677889999999999999999999999998732 246678888888888888777665443
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.21 E-value=4.7e-05 Score=62.83 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
..+-..|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|+.-+++++++. +..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~ 110 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQ 110 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Ccc
Confidence 34455677888999999999999999999 78889999999999999999999999999999996 333
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
......++...|.+|..+|+-+.|...|+.|-++-
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 55667889999999999999999999999988763
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.20 E-value=4.3e-05 Score=82.50 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc--------HHHHHHHHHHHH
Q 005145 476 VFVRLADMYNRTG---KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE--------LEQAIKLLQKAL 544 (712)
Q Consensus 476 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al 544 (712)
-++..|.-|...+ .+..|+.+|++|+++ .|..+.++..++.+|..... ...+.....+++
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS---------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3344444444443 377999999999999 66677888888877765432 233333344333
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005145 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (712)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 624 (712)
.+. . .+....++..+|..+...|++++|...+++|+.+- +. ..+|..+|.++...|++++|++.|+
T Consensus 412 al~----~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 412 ALP----E-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hcc----c-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 321 1 11123577788888889999999999999999962 22 4799999999999999999999999
Q ss_pred HHHHH
Q 005145 625 EARSI 629 (712)
Q Consensus 625 ~al~~ 629 (712)
+|+.+
T Consensus 478 ~A~~L 482 (517)
T PRK10153 478 TAFNL 482 (517)
T ss_pred HHHhc
Confidence 99998
No 193
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=0.0002 Score=66.96 Aligned_cols=241 Identities=13% Similarity=0.083 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005145 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (712)
Q Consensus 237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~ 316 (712)
.+++|+.-|++++++- +.....-..++..+..+++++|+|++-...|.+.+.........++..-. ...+-.
T Consensus 42 ~p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs---IN~IlD 113 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS---INSILD 113 (440)
T ss_pred CHHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH---HHHHHH
Confidence 3899999999999874 33333446788889999999999999999999998876544444443322 222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH----HHH
Q 005145 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEA 392 (712)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a 392 (712)
.-....+.+--..+|+..+...+.. .+......+-..||.+|+..++|..-.+.+.+.-..+....+.+.. ...
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 2223344555556666666655442 2223344455678999999999999888888877776655443332 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
.+|..-..+|..+.+-..-...|++++.+-...+.+.-...+.-.-|..+.+.|+|++|-.-|-+|..-+.+.+.+ ...
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRt 270 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRT 270 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chh
Confidence 4555556778888888888888999987766666555555566666788899999999999999998887777633 233
Q ss_pred HHHHHHHHHHHHHHcC
Q 005145 473 VASVFVRLADMYNRTG 488 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g 488 (712)
.+.-|..||.++...|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4445666777777665
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.18 E-value=1.3e-05 Score=60.28 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
.+|..+...|++++|+..|++++ ...|....++..+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999998 677889999999999999999999999999999988
No 195
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=5.3e-05 Score=78.06 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=100.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005145 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (712)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (712)
|-.++...++++.|+..+++... ..|. +...++.++...++..+|+..+.+++.. .|.....+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRE------RDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHh------cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 34445567889999999988652 3343 4456899999999999999999999976 67778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005145 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (712)
...+..+...++++.|+.+.+++..+ .|.....|..|+.+|...|+++.|+..+..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l---------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL---------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh---------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999999999999999999 566788999999999999999999977663
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.16 E-value=5.1e-05 Score=81.93 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHH
Q 005145 310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALD 378 (712)
Q Consensus 310 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~ 378 (712)
-++..|..|...++ +..|+.+|++++++ +|..+.++..++.+|.....+ ..+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35666766666554 78999999999999 899999998888877664332 233333333333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
+.. ++.. ..++..+|..+...|++++|..++++|+.+ .+. +.+|..+|.++...|++++|+..|++|
T Consensus 413 l~~---~~~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPE---LNVL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ccc---CcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211 1111 346778899999999999999999999853 343 678999999999999999999999999
Q ss_pred HHH
Q 005145 459 LTA 461 (712)
Q Consensus 459 l~~ 461 (712)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 998
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=98.15 E-value=5.6e-05 Score=77.42 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CCHhHHHHHHHHh
Q 005145 223 LLLKQARELISSGD--NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQS 291 (712)
Q Consensus 223 ~l~~~a~~~~~~g~--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~---------g~~~~A~~~~~~a 291 (712)
-++..|...+..+. ....|+.+|.+|+.. ...+|..+.+|..++.|++.. ....+|..+.++|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 44667777766652 134566666666622 234477888999999998765 2345777888888
Q ss_pred hchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005145 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (712)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (712)
+++. +.++. ++..+|.+....++++.|+..|++|+.+ +|+.+.+++..|.+....|+.++|.+
T Consensus 331 veld-----~~Da~----a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 331 SDIT-----TVDGK----ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HhcC-----CCCHH----HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876 55554 4899999999999999999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
.+++++++.|.... .....+..-.+.....+.|+..|-+
T Consensus 394 ~i~~alrLsP~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 394 CIDKSLQLEPRRRK-------AVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHhccCchhhH-------HHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999988754321 1222222212334456677766643
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=3.3e-05 Score=79.58 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=101.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (712)
|-.++...++++.|+.++++..+..+. +...++.++...++..+|+..+.+++. ..|..+..+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence 344455678899999999987655421 455689999999999999999999983 344457888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
...+..+...++++.|+.+.+++..+ .|.....|..|+.+|...|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999999 8999999999999999999999999877644
No 199
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0064 Score=59.19 Aligned_cols=302 Identities=14% Similarity=0.101 Sum_probs=193.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhh-cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEE-GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
..+.......++++++..|.+.+....... ++......-.+...+|..|...|+..+-..........+..+. .+.
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kak 85 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAK 85 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHH
Confidence 345555566777888888888877421110 1111111223578899999999999887777766655544321 233
Q ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005145 349 VGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 349 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
.+.....|-..+. ..+.++.-+.++..+++....... ....-..-..+..+|...++|.+|+......+..++..++
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD 163 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD 163 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444333 334566677788888877655432 2222334456788999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
......++..-..+|+...+..+|...+..|-..+...+. +|.. +..=..=|.++....+|..|..||-+|++-+..
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 9988888888899999999999999999888777666653 2322 222233356667778999999999999998766
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005145 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNA 584 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 584 (712)
. +++.....++..+-.+-...+..++--.++..=..+. ..|.. ..+...++.++... .+|+.|+.-|..-
T Consensus 242 ~---~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~---i~AmkavAeA~~nRSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 242 L---DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRD---IDAMKAVAEAFGNRSLKDFEKALADYKKE 313 (411)
T ss_pred c---CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcc---hHHHHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence 3 3344455555555556666666666554443222221 11211 24555566666442 4556665555544
Q ss_pred HH
Q 005145 585 IS 586 (712)
Q Consensus 585 l~ 586 (712)
+.
T Consensus 314 L~ 315 (411)
T KOG1463|consen 314 LA 315 (411)
T ss_pred Hh
Confidence 43
No 200
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.001 Score=62.87 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=156.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005145 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (712)
.+|.-....+++++|+..|.+.+...-...+...-+.-.+...++.+|...|++..-.+........+.... .+....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHHH
Confidence 455566677889999999988875511111111112233677899999999998877666655544333322 2333333
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005145 435 DCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 435 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
...+-.-+ .....++.-+..+...++.+.+... .......-..+..+++..|+|.+|+....-.+.-+++ -++.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DDK 161 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDDK 161 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcCc
Confidence 33332222 2345677778888888777654320 1112233456788899999999999999998888777 3445
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005145 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
+.....+..-..+|....+..++..-+..|.......+-++...+.+-..-|.++....+|.-|..+|-+|++-+....
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 6667788888999999999999999998888877776555555555555557777788899999999999988665443
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00047 Score=60.99 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=119.9
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
..+.=+.+....-..+.+++.+... -.+.||......|++.+|..+|++++. +........+..++
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTvq---------nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA 131 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTVQ---------NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLA 131 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhHH---------HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHH
Confidence 3334455555555555555554332 467889999999999999999999974 44445567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (712)
...+..+++..|...+++..+.-. ....+.....+|..|..+|++.+|...|+.++..+.. ..+
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~a 195 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQA 195 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHH
Confidence 999999999999999998887621 1123456778899999999999999999999998543 445
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
....+..+..+|+.++|..-+....+....
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 566788899999999988877766655443
No 202
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.11 E-value=0.0064 Score=60.80 Aligned_cols=254 Identities=18% Similarity=0.118 Sum_probs=148.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh----CCCC----hh
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-DHEAALEHLVLASMTMIA----NDQD----AE 430 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~----~~~~----~~ 430 (712)
....|+++.|..++.++-..............+..+++.|.-....+ +++.|..+++++..++.. .... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887753333334456788999999999999 999999999999988644 1222 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..++.+|...+.++...+ ..+++.......+ +++ ..+..--.++...++.+++.+.+.+++.-..-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~--- 154 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS--- 154 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---
Confidence 56778889999999888765444 4444555544433 233 333222233334888999999988888764311
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHH
Q 005145 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML--GNYSDS--YDSFKNAIS 586 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~ 586 (712)
....-.+...+ ..+.. .....|...+...+...-....+. ..... .+-.++... ++.... ++.....+.
T Consensus 155 --e~~~~~~l~~i-~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 155 --ESNFDSILHHI-KQLAE-KSPELAAFCLDYLLLNRFKSSEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred --cchHHHHHHHH-HHHHh-hCcHHHHHHHHHHHHHHhCCChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 11111111111 11222 234567777766665433321111 22221 112222222 222222 334444444
Q ss_pred HHHHh-CCCCChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 587 KLRAI-GERKSAF----FGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 587 ~~~~~-~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
..... ...-... .-..+.+.|...+..++|.+|+.+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 32222 2222221 123566778889999999999999998773
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=4.4e-05 Score=67.03 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
.+...+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+......|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 4566899999999999999999999987766 66777889999999999999999999999999887655443
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
.+..|.++...|+...|+..|..++.
T Consensus 108 --------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 --------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 67899999999999999999998874
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.11 E-value=0.00081 Score=63.53 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
-+..+++-|...+..|+|++|...|+..... -+..|....+...++..+++.+++++|+..+++-+.++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence 4566788899999999999999999987754 1234556788999999999999999999999999999655
Q ss_pred CCChhHHHHHHHHHHHHHHc-----cc---HHHHHHHHHHHHHHHHhCCCCCC----------cHHHHHHHHHHHHHHcC
Q 005145 511 VPPEEIASGLTDVSSIYESM-----NE---LEQAIKLLQKALKIYNDAPGQQS----------TVAGIEAQMGVMYYMLG 572 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~la~~~~~~g 572 (712)
++....+++..|.+++.. .+ ..+|+..|+..+..+|+..=... .++.--..+|..|.+.|
T Consensus 104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777888888877653 23 34555556666555554311111 12222346788999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005145 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE 621 (712)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 621 (712)
.+..|+..++.+++-+... .....++..+..+|..+|-.++|..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t-----~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 182 AYVAAINRFEEVLENYPDT-----SAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred ChHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999998864332 3345788999999999999888865
No 205
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.11 E-value=0.0024 Score=63.83 Aligned_cols=253 Identities=14% Similarity=0.110 Sum_probs=144.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhc---CC---CCCHHH
Q 005145 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDN---GS---PASLEE 391 (712)
Q Consensus 319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~---~~---~~~~~~ 391 (712)
...|+++.|..++.++-.+............+..+++.|......+ +++.|..+++++.++.... .. ......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5689999999999998877542211112356788999999999999 9999999999999997441 11 112345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (712)
..++..++.+|...+.++...+.. .++... ...++++... ...-.+....++.+.+.+.+.+++.-..- .
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~-~~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----~ 154 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKAL-NALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH-----S 154 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----c
Confidence 678899999999998876554432 233333 2233444332 22223333478899998888888775221 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc--cHHHH--HHHHHHHHHH
Q 005145 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQA--IKLLQKALKI 546 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~~ 546 (712)
.............+.. .....|...+...+...-.. ..+. ..... .+..++...+ +.... ++.+...+..
T Consensus 155 e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 1111221222222222 33456667776666543221 1111 11111 1222222222 22222 3334444443
Q ss_pred HHhCCCCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 547 YNDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 547 ~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
.....+.+- ....++.+.|..+++.++|.+|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 222222221 2223456778899999999999999998764
No 206
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0013 Score=63.75 Aligned_cols=261 Identities=18% Similarity=0.133 Sum_probs=169.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGS--PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (712)
..+.......++++++..+...+........ ......-.+...+|.+|...|+.++-..........+...+ .+..+
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-Kakaa 87 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKAA 87 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHHH
Confidence 3344445556677788888777764211110 01111223567899999999999888777766544333322 22233
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005145 433 SVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 433 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
.....+-..+. .-+..+.-+.++..+++.+.+... .......-..+..+|...++|.+|+.+....++-.++. +
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---D 162 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---D 162 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---c
Confidence 33333333333 234556777788888877665321 11222344578899999999999999999988887773 3
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
+......++..-..+|+...+..+|...+..|.......+-++...+.+-..-|.++....+|.-|..||-+|.+-+..+
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 45556777788889999999999999999988887776655555555555556777888899999999999999987776
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 592 GERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
+..... ..++..|-.+-...+..++-..++
T Consensus 243 ~~~v~A--~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 243 DDDVKA--LTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred CCcHHH--HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 654222 344444445555556655544443
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=3.1e-05 Score=73.63 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
.++.|.-++..|+|..|...|..-++. .++.+....+++.||.+++.+|+|++|...|..+.+-+.+ ++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CC
Confidence 778888899999999999999998887 3456778899999999999999999999999999998655 56
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
..+.+++.||.+...+|+.++|...|+++++.+|..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 677899999999999999999999999999887755
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00053 Score=64.77 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
.++.-|......|+|++|+..|+.+.... +..|....+...++.++++.+++++|+..+++-+.+++...+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---- 106 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---- 106 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC----
Confidence 48899999999999999999999987652 234666789999999999999999999999999999876654
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCChhH--------------HHHHHHHHHHHHHcCCHHH
Q 005145 390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQDAEV--------------ASVDCSIGDTYLSLSRYDE 450 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~ 450 (712)
...+++..|.++... .+...+...+...-......++.+-. +.--..+|..|.+.|.+..
T Consensus 107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 344667777776532 34444444444333333443433322 2223467899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (712)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (712)
|+..++.+++-+.. .+....++..+...|..+|-.++|...-
T Consensus 186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999987443 4566788899999999999999986643
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.07 E-value=0.028 Score=60.49 Aligned_cols=175 Identities=16% Similarity=0.087 Sum_probs=121.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
+..-.|+-+.++..+.++.. ..+-....+ ..|+.....+. .....+.|...+...... .|.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~ 265 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPN 265 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCC
Confidence 33456899999999988753 111111111 11222111121 234556777777777766 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005145 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (712)
.+..+...|+++...|+.++|++.|++++...... ......+++.++.++..+.+|++|..++.+..+..
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s----- 335 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES----- 335 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----
Confidence 88889999999999999999999999988532221 22345678899999999999999999999887642
Q ss_pred CCCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhCCCCCh
Q 005145 553 QQSTVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
....+...+..|.++...|+. ++|..+|.++-.+..+......|
T Consensus 336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 223345567788999999999 88888888887777664444444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.001 Score=62.23 Aligned_cols=143 Identities=15% Similarity=0.050 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
...+.+.++.++.-.+.|.-....+.+.++..+.. .......||.+.++.|+.+.|..+|+..-+.......-
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 34566778888888999999999999988844222 13367789999999999999999999776555555555
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.....+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++.|.|+...|+..+|++.++.++.+...
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 666778888999999999999999999999887 7778889999999999999999999999999988544
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00015 Score=64.73 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
.+-.-|.-++..|+|++|..-|..|+..+..... ......|.+.|.++.+++.++.|+....+++++ .|..
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty 167 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY 167 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence 3445678889999999999999999987755433 455678899999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..++...|.+|..+.+|++|++-|.+.+++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00021 Score=68.94 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLR 589 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 589 (712)
+|..+..|..||.+|..+|++..|...|.+|+++.++. ..++..+|.+++.+. ...++...|++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------PEILLGLAEALYYQAGQQMTAKARALLRQALAL-- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence 56678889999999999999999999999999998766 357777888877654 467899999999885
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005145 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
.+....+++.||..+++.|+|.+|...++..++. ..++.|....+-..++..
T Consensus 223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA 274 (287)
T ss_pred ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence 2334589999999999999999999999999887 344455544444444443
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=7.6e-05 Score=71.95 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCCh
Q 005145 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTANP 666 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~p 666 (712)
+..+.-|..||.+|..+|++..|...|.+|+++ .|++...+..+|.++..+.. .+.....+|
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 334578999999999999999999999999999 89999999999998887665 555567899
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.+..+++.||..++.+|++.+|. ..++.+|+..|.
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~ 259 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA 259 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence 99999999999999999999999 999999999886
No 214
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.0001 Score=65.76 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005145 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
+..+..-|.-++..|+|++|..-|..|+.+++..+. .....+|.+.|.++.+++.++.|+.-..+|+++ .
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~ 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------N 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------C
Confidence 344556788889999999999999999999987643 334456789999999999999999999999997 3
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005145 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
+.+..++...|.+|.++..|++|++-|.+.+++ +|....+...++.+
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL 211 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence 456688889999999999999999999999998 77766655554433
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=3.8e-05 Score=73.10 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
+..|.-++..|+|..|...|..-++.. |+... ...+++.||.+++.+|+|+.|...|..+++-+ +.+|.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 334555667899999999999999876 44433 34579999999999999999999999999875 33678
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (712)
..++++.||.+...+|+.++|...|+++++.+|...
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 889999999999999999999999999999887653
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.017 Score=54.36 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=160.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhh----------hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE----------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
+...-.++.++..+++|..-++-.-++.... .+.....+-+.....-|.+....|+..+.+.-+......
T Consensus 72 wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~ 151 (366)
T KOG2796|consen 72 WTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV 151 (366)
T ss_pred HHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3334455566666777766555433332100 000001112334455677777888888887777665554
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
.+++ -..+......+..+..+++-+.. +.+.+..++.-.|.|.-.+..+.+
T Consensus 152 V~~i---------------i~~~e~~~~~ESsv~lW~KRl~~--------------Vmy~~~~~llG~kEy~iS~d~~~~ 202 (366)
T KOG2796|consen 152 VSKI---------------LANLEQGLAEESSIRLWRKRLGR--------------VMYSMANCLLGMKEYVLSVDAYHS 202 (366)
T ss_pred HHHH---------------HHHHHhccchhhHHHHHHHHHHH--------------HHHHHHHHHhcchhhhhhHHHHHH
Confidence 3221 11111222234455555554432 567788889999999999999998
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (712)
.+. .+++........+|.+..+.||.+.|..+|++.-+....+.+ -.....+..+.+.+|.-.+++.+|...|
T Consensus 203 vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 203 VIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHHHHH
Confidence 875 344555667788899999999999999999977665554432 3445667888899999999999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.+++.. ++..+.+.++.|.|+.-.|+...|++.++.++...|..
T Consensus 276 ~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 276 TEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 998877 34456778899999999999999999999998876644
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.001 Score=58.97 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
.-.+.+|......|++.+|..+|++++.- -.......+..++...+..+++..|...+++..+.-..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------ 156 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------ 156 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc------
Confidence 44567899999999999999999999863 13344678889999999999999999999988776322
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
...+.....+|..|..+|.+.+|...|+.++..++.. ......+..+..+|+..+|..-+....+..
T Consensus 157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP--------QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--------HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1123446788999999999999999999999987654 344567888999999999887776665543
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.90 E-value=0.00029 Score=60.60 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (712)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (712)
...++.-|...+..|+|.+|++.|+.....+ +..+....+...||.+|...+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 3567788999999999999999999876642 223344578999999999999999999999999997 577
Q ss_pred ChhhHHHHHHHHHHHHHccc--hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 638 HPDTLGVYSNLAGTYDAIGR--EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 638 ~p~~~~~~~~La~~~~~~g~--~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
||+...+++..|.++..+.. ...+- ..-...+...+|. ..|+.++...|+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~--------------~~drD~~~~~~A~-~~f~~lv~~yP~ 131 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFF--------------RSDRDPTPARQAF-RDFEQLVRRYPN 131 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhc--------------ccccCcHHHHHHH-HHHHHHHHHCcC
Confidence 88888899999988887654 11111 2223344566888 999999999998
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.035 Score=59.22 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEV-----QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
.|..||......-.++-|...|-++-.. .+++ .....--...|.+-..-|+|++|.++|-.+
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 4888888887777788888777765322 1111 000000122344445557888888777543
No 220
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.024 Score=53.88 Aligned_cols=229 Identities=13% Similarity=0.076 Sum_probs=157.5
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
.+|.-....+++++|+..|.+.+.--.... .......-.+...++.+|...|++..--+......+...... .|..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~d-ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~ 83 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKD-EKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI 83 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChh-hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence 356677788999999999999886511100 111111223578899999999998776666655555444321 2444
Q ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 350 GETCRYLAEAH-VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 350 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
..+...|-.-+ .....++.-+..+...++...+... .......-..+..+++..|.|.+|+....-.+..+...++.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 44444443333 2345677777788777776654331 12222334567888999999999999999998888888999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
+....++..-..+|....+..++..-+..|-..+...+. .|.. +..-..-|.+++...+|..|..+|-++++-+..
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 999999999999999999999999988888777766653 2222 222222355667788999999999999987755
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.0018 Score=66.51 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=72.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccch---
Q 005145 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA--- 304 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--- 304 (712)
....++.. ++++-++...+||++. |+.+.+|..||.-. .....+|..+|+++++..+...+....
T Consensus 175 Mq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 175 MQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 33344454 4999999999999987 55677777666532 345788999999988876443332110
Q ss_pred -------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005145 305 -------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (712)
Q Consensus 305 -------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (712)
...+.+...+|.|..++|+.++|++.++..++... ..+...+..+|..++...+.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00122334455555555555555555555444310 01233344555555555555555544
Q ss_pred HHHH
Q 005145 372 FCQM 375 (712)
Q Consensus 372 ~~~~ 375 (712)
++.+
T Consensus 317 lL~k 320 (539)
T PF04184_consen 317 LLAK 320 (539)
T ss_pred HHHH
Confidence 4443
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0033 Score=60.99 Aligned_cols=166 Identities=12% Similarity=-0.023 Sum_probs=128.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (712)
-+.+.+..|++.+|....++.++-+|... .++..--.+++..|+...-...+++.+.. -+.+.|....+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVH 178 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHH
Confidence 34566778999999999999888775542 24444556778888888888888876521 134566677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005145 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (712)
..++..+...|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-...+.. ...
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~ml 245 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WML 245 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHH
Confidence 88899999999999999999999999 88888899999999999999999999988766554431 122
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005145 516 IASGLTDVSSIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (712)
...-|...|.++...+.|+.|++.|.+-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 33445677888889999999999998644
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.85 E-value=0.0003 Score=60.49 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..++.-|...+..|+|.+|++.|+.+.... |-.+. .-.+...||.+|+..+++++|+..+++-+++. +
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----P 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C
Confidence 4457778999999999999999999987765 22222 22358899999999999999999999999984 5
Q ss_pred CChhHHHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHHHhc
Q 005145 345 TDPRVGETCRYLAEAHVQALQ---------------FSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~ 383 (712)
.+|....+++..|.+++.+.. ...|...|++.+..+|+.
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 578899999999999998876 778888888888877654
No 224
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=4.9e-05 Score=57.69 Aligned_cols=53 Identities=30% Similarity=0.374 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+..|++++|+..|++++.. .|....++..+|.+|...|++++|..++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999998 8888999999999999999999999999999887
No 225
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.82 E-value=3.8e-05 Score=51.69 Aligned_cols=41 Identities=44% Similarity=0.531 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 640 (712)
+.++.+||.+|..+|++++|..++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46889999999999999999999999999999999999995
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.78 E-value=7.4e-05 Score=76.44 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.|..+..++++|.+|+.+|+|++|+..|++++++ .|+.. .+|+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777 45444 45777777777777777777777777776
No 227
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.78 E-value=0.00013 Score=70.58 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+-..|.-|+++|.|++|+.+|.+++.. .|.++..+.+.|..|+++.+|..|..-+..|+.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence 345688999999999999999999998 8888889999999999999999999999999998 44
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.+..+|...+.+-..+|...+|.+.++.++++-+..
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 478899999999999999999999999999987653
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=0.00014 Score=56.14 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
|..+|...+++++|+.++++++.+ +|.....+..+|.++..+|++.+|...|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356889999999999999999999 88899999999999999999999999999999884
No 229
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=8.8e-05 Score=56.25 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005145 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (712)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 647 (712)
++..|++++|+.+|++++.. .+....++..+|.+|...|++++|...+++++.. +|+....+.-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence 35789999999999999986 2334578889999999999999999999999987 7776666655
Q ss_pred HHH
Q 005145 648 LAG 650 (712)
Q Consensus 648 La~ 650 (712)
+|.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 230
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.14 Score=56.79 Aligned_cols=229 Identities=16% Similarity=0.094 Sum_probs=130.7
Q ss_pred cccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005145 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (712)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~ 277 (712)
...++|.+|......+...+|+...+....|..+++.|+ .++|..+++ ++... ... .-..+..+-.+|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le-~~~~~-----~~~---D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLE-ALYGL-----KGT---DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHh-hhccC-----CCC---chHHHHHHHHHHHH
Confidence 344566667777777888899999999999999999997 888885443 33321 111 24456678899999
Q ss_pred cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH-HHHHH
Q 005145 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE-TCRYL 356 (712)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l 356 (712)
++++++|..+|++++... |. . ..++.+-.+|.+.+.|.+-.+. ++++++. -|..+. .|..+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~-----P~-e----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKY-----PS-E----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVI 151 (932)
T ss_pred HhhhhHHHHHHHHHHhhC-----Cc-H----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHH
Confidence 999999999999998776 32 1 1356666677777777654433 3333332 122222 22223
Q ss_pred HHHHHHhCCHHHHHH-----HHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005145 357 AEAHVQALQFSEAQK-----FCQMALDIHKDNGS-PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 357 a~~~~~~g~~~~A~~-----~~~~al~~~~~~~~-~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
..+.......+.+.. +.+++.+..-...+ -...... ...-.++..+|++++|++.+..-+.. ...+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~---~Lyl~iL~~~~k~~eal~~l~~~la~----~l~~~ 224 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI---ILYLLILELQGKYQEALEFLAITLAE----KLTSA 224 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH---HHHHHHHHhcccHHHHHHHHHHHHHH----hcccc
Confidence 333333333333222 12222221111111 1111111 22234667889999999988543211 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
...........+...++|.+-.+...+++..
T Consensus 225 ~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 225 NLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred chHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 2233334456667778888877777777665
No 231
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.70 E-value=0.00022 Score=54.97 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005145 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (712)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 643 (712)
|..+|...+++++|+.++++++.+. |.....+..+|.++..+|++.+|...|+++++. .|+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALEL--------SPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--------CCCcHH
Confidence 3568899999999999999999972 334578999999999999999999999999988 666555
Q ss_pred HHHHHH
Q 005145 644 VYSNLA 649 (712)
Q Consensus 644 ~~~~La 649 (712)
+....+
T Consensus 65 ~~~~~a 70 (73)
T PF13371_consen 65 ARALRA 70 (73)
T ss_pred HHHHHH
Confidence 544433
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.68 E-value=0.0002 Score=73.43 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
.|..+..++++|.+|...|+|++|+..|++++++.. ++.....+|+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999932 23322356999999999999999999999999997
No 233
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.075 Score=59.25 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
+|..+|.+....|...+|++.|-+|- +| ..|.....+....|.|++-++++..+.+..+...
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----- 1167 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----- 1167 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-----
Confidence 37777777777777777777666531 22 3445555566667777777777766665543322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005145 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
+-..|-.+|...++..+-.+++. .|..+. ....|.-++..|.|+.|.-+|..
T Consensus 1168 ----id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------------ 1219 (1666)
T KOG0985|consen 1168 ----IDSELIFAYAKTNRLTELEEFIA-----------GPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------------ 1219 (1666)
T ss_pred ----chHHHHHHHHHhchHHHHHHHhc-----------CCCchh-HHHHhHHHhhhhhhHHHHHHHHH------------
Confidence 12234444555555554443321 122221 23456666666777666555532
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
..-|..|+..+..+|+|..|....++|
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233455666777777777777666655
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.088 Score=54.92 Aligned_cols=270 Identities=13% Similarity=0.052 Sum_probs=149.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH-
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV- 349 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 349 (712)
.+.+.+++|+|+.-..+....-. ..+ ...+..+......++++++..+.+++.......+.......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~--------~~~----~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~ 71 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE--------DSP----EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESY 71 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC--------CCh----hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 36778889999984444433221 111 12344455555889999999999998887654332211111
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005145 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
..++-.+.. +....+.+++..+.......... .......|.. .+-....+++--...+.-=..++.......
T Consensus 72 ~~~y~~l~~-lq~L~Elee~~~~~~~~~~~~~~-----~~~l~~~W~~--Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~ 143 (352)
T PF02259_consen 72 QRAYPSLVK-LQQLVELEEIIELKSNLSQNPQD-----LKSLLKRWRS--RLPNMQDDFSVWEPILSLRRLVLSLILLPE 143 (352)
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHhhcccHHH-----HHHHHHHHHH--HHHHhccchHHHHHHHHHHHHHHhcccchh
Confidence 122222221 22223333443333111000000 0000001111 111112222221111110001111112356
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcCC
Q 005145 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR-IYEKPV 508 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~ 508 (712)
..+..+..++.+....|.++.|...+.++....... ......+....+.++...|+..+|+..++..+. ......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 677888999999999999999999999887652111 111456777889999999999999999988888 322210
Q ss_pred ------------------------CCCCChhHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 005145 509 ------------------------PGVPPEEIASGLTDVSSIYESM------NELEQAIKLLQKALKIYNDAPGQQSTVA 558 (712)
Q Consensus 509 ------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (712)
........+.++..+|...... +..++++..|.++..+.+.. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~ 292 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------E 292 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-------H
Confidence 1122344567777788877777 88888999999998887655 2
Q ss_pred HHHHHHHHHHHHc
Q 005145 559 GIEAQMGVMYYML 571 (712)
Q Consensus 559 ~~~~~la~~~~~~ 571 (712)
..+..+|..+...
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665543
No 235
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.17 Score=56.62 Aligned_cols=216 Identities=19% Similarity=0.164 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
...|..+|.+....|...+|++.|-++- +|. .|...-......|.|++-+.++.-+.+-.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E---- 1165 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DPS----NYLEVIDVASRTGKYEDLVKYLLMARKKVRE---- 1165 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC----------CcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC----
Confidence 4467789999999999999999997752 332 3777888888999999999998887665433
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005145 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 424 (712)
|.. -..|-.+|.+.++..+-.+++. +++.. -....|.-++..|.|+.|.-+|...
T Consensus 1166 --~~i---d~eLi~AyAkt~rl~elE~fi~----------gpN~A----~i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1166 --PYI---DSELIFAYAKTNRLTELEEFIA----------GPNVA----NIQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred --ccc---hHHHHHHHHHhchHHHHHHHhc----------CCCch----hHHHHhHHHhhhhhhHHHHHHHHHh------
Confidence 211 1233344555666555443321 11111 2345677777777777776666432
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HH---------------HhcCCCCHHHHHHHHHHHHHHHHc
Q 005145 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FK---------------TNKGENHPAVASVFVRLADMYNRT 487 (712)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~---------------~~~~~~~~~~~~~~~~la~~~~~~ 487 (712)
.-+..++..+..+|+|..|....++|-.. ++ ++.|-+-.-.+.-+-.+...|...
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence 23455666677777777777776665332 11 111111112234455677788899
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005145 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
|-|++-+.+++.++.+-+. ..-.+..||.+|.+- ++++-.++++
T Consensus 1293 GyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred CcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 9999999999998887443 244567777777653 4555544443
No 236
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.62 E-value=0.18 Score=55.88 Aligned_cols=230 Identities=16% Similarity=0.068 Sum_probs=134.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005145 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (712)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (712)
...++ +.+|+....+.++-. |...-+...-|..+.++|++++|..+++..-... ..+ -.++
T Consensus 20 ld~~q-fkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~tL 80 (932)
T KOG2053|consen 20 LDSSQ-FKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLTL 80 (932)
T ss_pred hhhHH-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHHH
Confidence 44444 788888877776643 3333344446888999999999997776543332 222 2247
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
..+-.+|..++++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+.--+..+..++.. ..
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~---yy-- 146 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA---YY-- 146 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc---ch--
Confidence 78889999999999999999999987 466 56677777788888877665544333333333322 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005145 392 AADRRLMGLICETKGDHEAALE-----HLVLASMT-MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
.|..+..+.......+.... +-++.... ....+.-...+.+. ..-.++..+|++++|...+..-+. ...
T Consensus 147 --fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l 221 (932)
T KOG2053|consen 147 --FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL 221 (932)
T ss_pred --HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc
Confidence 23344444444444444333 11111111 11122111222222 223456678999999998843322 111
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.+............+...+++.+-.++..+++..
T Consensus 222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 2333333345566677788888877777777666
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.61 E-value=0.015 Score=64.25 Aligned_cols=282 Identities=19% Similarity=0.152 Sum_probs=178.5
Q ss_pred CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005145 280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354 (712)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 354 (712)
+...|..+++.+.... .+.+...+|.+|..- .+.+.|+.+|+.+...+.+... .....+.+
T Consensus 227 ~~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~ 292 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQY 292 (552)
T ss_pred hhhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCcccc
Confidence 3567888888776653 333467778877654 6899999999999883221110 11234677
Q ss_pred HHHHHHHHhC-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Q 005145 355 YLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 355 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 426 (712)
.+|.+|.... ++..|..+|.++-..-. ..+.+.+|.++..-. ++..|.++|..|..
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------ 356 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGN----------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK------ 356 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCC----------chHHHHHHHHHHcCCccccHHHHHHHHHHHHH------
Confidence 8899888743 67788888888765431 226778888887765 67899999998862
Q ss_pred CChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005145 427 QDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENAL 501 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 501 (712)
.....+.+.+|.+|.. .-+...|..+++++.+. . .+.+...++.++..- +++..+.-.+....
T Consensus 357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------G--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------c--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 2334667778877764 35789999999999887 2 123344444444332 77777777666665
Q ss_pred HHHhcCCCCCCChhH-HHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----C
Q 005145 502 RIYEKPVPGVPPEEI-ASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----G 572 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~-~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g 572 (712)
+..-+ .+.. +..+.......... .+...+...+.++...- . ..+...||.+|+.- .
T Consensus 425 ~~g~~------~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-----~----~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 425 ELGYE------VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG-----N----ADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred Hhhhh------HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc-----C----HHHHhhhcceeeecCCCCC
Confidence 55222 1111 11111111111111 14455555555554331 1 23566788887764 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Q 005145 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---YSINEAVELFEEARSI 629 (712)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~ 629 (712)
+++.|...|.+|... . +...+++|.++..- ..+..|..+|.++.+.
T Consensus 490 d~~~a~~~y~~a~~~----------~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQ----------G-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHh----------h-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 689999999998763 1 57888999888742 1268888888888774
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.60 E-value=0.064 Score=55.96 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
.....+..++.+..+.|+++.|..++.++...... .....+.+....+.++...|+..+|+..++..+.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~-----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS-----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 44555666666666666666666666655444211 1222445555556666666666666666655555221110
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh------CCHHHHHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR------YSINEAVELFEE 625 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~ 625 (712)
......... ..+..+ ..+.... ...........+.++..+|...... +..+++...|.+
T Consensus 219 ~~~~~~~~~--~~~~~~----~~~~~~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 219 IDSISNAEL--KSGLLE----SLEVISS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred cccccHHHH--hhcccc----ccccccc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 100000000 000000 0000000 0001112234567888888888888 899999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 626 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+..+ +|....++..+|..+...-.
T Consensus 284 a~~~--------~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 284 ATKL--------DPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HHHh--------ChhHHHHHHHHHHHHHHHHH
Confidence 9999 88888899999998876544
No 239
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.58 E-value=0.00036 Score=67.48 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005145 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (712)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (712)
-..|.-|+.+|.|++|+.+|.+++ ...|..+..+.+.|..|+++.+|..|..-+..|+.+ +.....
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~i------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~K 166 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAI------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVK 166 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhh------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHH
Confidence 456889999999999999999988 456666778899999999999999999999999999 778889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 476 VFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
+|...+..-..+|...+|.+-++.++++-
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 99999999999999999999999999983
No 240
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.24 Score=60.71 Aligned_cols=373 Identities=11% Similarity=0.028 Sum_probs=191.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH
Q 005145 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (712)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (712)
.+|..-+..+. |.+|+-++++- . ............+..+-.+|...++++.-......-... .
T Consensus 1388 tLa~aSfrc~~-y~RalmylEs~-~-----~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH-R-----STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------P--- 1450 (2382)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHh-c-----cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------c---
Confidence 56767777775 88888887763 0 001111222334555566888899988877766531111 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.+...-..+...|++..|..+|++++.. +|.....+...-...+..|.+...+...+-...-.
T Consensus 1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~----- 1513 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR----- 1513 (2382)
T ss_pred ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-----
Confidence 1445556677789999999999998877 34433334444444455566665555333222111
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------HHH---HHHHhCCCChhHHHHHHHHHHHH----------HHc
Q 005145 386 PASLEEAADRRLMGLICETKGDHEAALEHLV-------LAS---MTMIANDQDAEVASVDCSIGDTY----------LSL 445 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~-------~al---~~~~~~~~~~~~~~~~~~la~~~----------~~~ 445 (712)
+...-..+..--.+.+..++++.-..+.. .+. .+.-... ..+....+..+.... ...
T Consensus 1514 --se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~-~kD~~~~~~~i~~~r~~~i~~lsa~s~~ 1590 (2382)
T KOG0890|consen 1514 --SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNK-KKDEIATLDLIENSRELVIENLSACSIE 1590 (2382)
T ss_pred --CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhc-ccchhhHHHHHHHHHHHhhhhHHHhhcc
Confidence 01111111111222355566555544422 000 0000000 000011111111110 011
Q ss_pred CCHHHHHHHHHHHHHHHHH------h----cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005145 446 SRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (712)
|-|..+.++.-+...+.+- . .+.+......-|.+....-....+..+-+-.+++++-..... ......
T Consensus 1591 ~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~~~ 1668 (2382)
T KOG0890|consen 1591 GSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLKSR 1668 (2382)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--ccccch
Confidence 1333333333332222110 0 011111111122222221112222344444445544433221 133556
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCC
Q 005145 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GER 594 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 594 (712)
.+.+|...|++....|+++.|..++-.|.+... ..++...|..++..|+-..|+..+++.+.....- ..+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL---------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 899999999999999999999999888876542 3577889999999999999999999999765432 111
Q ss_pred --------CChHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005145 595 --------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 595 --------~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
.......+...++......+++ ..-+.+|..+.++ +|..-..++.+|..|.+
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHH
Confidence 1111223455555555666663 3446778888887 55555556666644443
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.46 E-value=0.039 Score=56.30 Aligned_cols=178 Identities=14% Similarity=0.093 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcCC
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR---TGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 508 (712)
..+..++-..|....+|+.-+.+.+..-.+ ...+.+....+...+|.++.+ .|+.++|+..+..++.....
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-- 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-- 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence 345556667788899998888877665443 001123345567788888888 99999999999997655322
Q ss_pred CCCCChhHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005145 509 PGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
..+.++..+|.+|... ...++|+.+|.++.++.+.. ..-.+++.++...|...+...
T Consensus 215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--------Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--------YSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--------cchHHHHHHHHHcCCcccchH
Confidence 2355688888887652 24678888888887775433 123466667777776444443
Q ss_pred HHHHHH-HHHH---HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 580 SFKNAI-SKLR---AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 580 ~~~~al-~~~~---~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
-+++.. .+.. +.+.......-..+..++.+..-.|++++|.+++++++.+
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333333 2211 2222222222244556677888899999999999999987
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.012 Score=57.32 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005145 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
.+..|++.+|.....+.++- .|....++..--..++..|+...-...+++.+.... .+.|-...+.-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-----~dlp~~sYv~G 179 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-----ADLPCYSYVHG 179 (491)
T ss_pred hhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-----CCCcHHHHHHH
Confidence 33444555554444444443 444444444444444445554444444444433321 11233333344
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005145 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (712)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (712)
.++-.+...|-|++|.+..++++++.+.. ..+...++.++...|++.++.++..+.-...+.. ......
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D-------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasH 248 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFD-------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASH 248 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcc-------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhh
Confidence 44444455555555555555555443221 2233344444555555555555444433322210 011112
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
-|...|.++...+.|+.|++.|.+
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHH
Confidence 233344444444555555555543
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.43 E-value=0.037 Score=61.13 Aligned_cols=281 Identities=16% Similarity=0.064 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-----CCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005145 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL-----GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM 312 (712)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (712)
...|..+++.+.+.- ...+...+|.+|..- .+.+.|+.+|+.+..-........++. +.+
T Consensus 228 ~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~----a~~ 292 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP----AQY 292 (552)
T ss_pred hhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc----ccc
Confidence 356777777665532 245666678887754 689999999999987210000011221 377
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcC
Q 005145 313 QLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---QFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 313 ~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 384 (712)
.+|.+|.... ++..|..+|.++... ....+.+.+|.++..-. ++..|.++|..|.....
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--- 359 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--- 359 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---
Confidence 8999998853 678899999998776 34467888898888665 56789999988865421
Q ss_pred CCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 005145 385 SPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKAL 459 (712)
Q Consensus 385 ~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 459 (712)
..+.+.++.+|.. .-+...|..++.++... .. +.+...++.++.. .++++.+...+....
T Consensus 360 -------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-----g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 360 -------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-----GN---PSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred -------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-----cC---hhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 2367777877764 45789999999988632 11 2223333333332 277777777766555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc----c
Q 005145 460 TAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----N 531 (712)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 531 (712)
++.-+. ....+..+.......... .+...+...+.++... ....+...||.+|..- .
T Consensus 425 ~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 425 ELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence 542221 111111111111111111 1344455555554433 2355677888887764 4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 005145 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---GNYSDSYDSFKNAIS 586 (712)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~ 586 (712)
+++.|...|.++.... +...+++|.++..- ..+..|..+|.++..
T Consensus 490 d~~~a~~~y~~a~~~~----------~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG----------AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh----------hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 6899999998887654 35778888888652 126788888888766
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00093 Score=61.68 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+..-|..++.-.+|+.|+..|.+++.+ +|..+..+.+.+.+|++..+++.+..-..+++++ .+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence 344566777888999999999999998 8999999999999999999999999999999999 56
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
..+..++.+|........|++|+..+++|..+....
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999999988765
No 245
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.37 E-value=0.25 Score=51.62 Aligned_cols=138 Identities=8% Similarity=-0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
|....+++.|-.-+..+ -+++..+.|++.+... +..+. +|...........+|+.-..+|.++|.-.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvL-- 84 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVL-- 84 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--
Confidence 45577788777777666 9999999999998876 44443 377777777888999999999999886521
Q ss_pred hCCCChhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------HHHcCCHHHH
Q 005145 342 LGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI---------CETKGDHEAA 411 (712)
Q Consensus 342 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~---------~~~~g~~~~A 411 (712)
....| ..|..+....|+...+....-+|.+......+- .+....+|...+.. +..+.+.+.-
T Consensus 85 -------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v 156 (656)
T KOG1914|consen 85 -------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAV 156 (656)
T ss_pred -------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence 12222 234445555666666666655665554333221 11111122222221 2334466667
Q ss_pred HHHHHHHH
Q 005145 412 LEHLVLAS 419 (712)
Q Consensus 412 ~~~~~~al 419 (712)
...|++|+
T Consensus 157 RriYqral 164 (656)
T KOG1914|consen 157 RRIYQRAL 164 (656)
T ss_pred HHHHHHHh
Confidence 77788776
No 246
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.36 E-value=0.031 Score=45.77 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=86.1
Q ss_pred HHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 349 VGETCRYLA--EAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 349 ~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
++.+|..|+ .-.+.-|-|++|..-+.+++++.......... ..+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 445555554 34556789999999999999998776554322 246678889999999999999999999999887
Q ss_pred HhCCC-Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 423 IANDQ-DA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (712)
Q Consensus 423 ~~~~~-~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (712)
...+. +. ....+.++.|..+...|+.++|+..|+.+-++..+..|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 65332 22 234556788999999999999999999999988776554
No 247
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.36 E-value=0.043 Score=44.96 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred HHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 516 IASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 516 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
++.+|..|+.. .+.-|-|++|..-+.+|+++....+.... .-+.++..|+.++..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45555555544 44568899999999999999988755432 335577889999999999999999999999998
Q ss_pred HHhCCCCC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 589 ~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
..-++.+. .....+.++.|..+...|+.++|+..|+.+-++..+.-|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 87665443 234456677889999999999999999999998776555
No 248
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.34 E-value=0.0033 Score=59.54 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----ChHHHHHHH
Q 005145 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-----SAFFGVALN 604 (712)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~ 604 (712)
...+++|++.|.-|+-...-........+.++..+|++|...|+.+....++++|+..+.+..... ......+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 446889999999888877655445557888999999999999999988899999988887653221 223457888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 605 QMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 605 ~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.+|.+..+.|++++|..+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999998874
No 249
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=61.03 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005145 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (712)
+..-|..++.-.+|..|+..|.+++.+. |..+ ..+.+.+.+|++..+++.+..-..+++++ .|
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~n-----P~~~----~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICIN-----PTVA----SYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcC-----CCcc----hhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 4445788888899999999999999886 3332 34889999999999999999999999999 79
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
+.+..++.+|.+......|++|+..++++..+......+
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999888776543
No 250
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0023 Score=62.03 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005145 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (712)
.+..+..-|.-|+...+|..|+..|.+.|... ..++...+.+|.+.|-+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 46666777999999999999999999999875 5555667778999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+|....+++.-|.|++.+.++++|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7999999999999999999999999999998776533
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.33 E-value=0.0087 Score=54.96 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
......++..+|..|.+.|++++|++.|.++...... .......+..+..+....+++.....++.++..+...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 5667789999999999999999999999998887433 4567888999999999999999999999999998776
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
. ++.......-..-|..++..++|.+|...|-.+..-+
T Consensus 106 ~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 106 G-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred c-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4 4444444455567778888999999999988876543
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.34 Score=52.07 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh----hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV----IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (712)
Q Consensus 258 ~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 333 (712)
..|+|.. +..||......-.++-|...|-+.-.... +..+.-+. --...+.+-..-|+|++|.+.|-.
T Consensus 688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s-----~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS-----KEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh-----HHHHhHhHhhhhcchhHhhhhhhc
Confidence 4566544 55567777666677777777766543310 00000000 013345555556788888777654
Q ss_pred H------HHHHHHH-------------h-CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 334 G------LEVQKQV-------------L-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (712)
Q Consensus 334 a------l~~~~~~-------------~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (712)
+ +++..++ . +.++.....++.++|..+..+..|++|.++|...-
T Consensus 760 ~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 760 ADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred cchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 2222211 0 22334556677788888888888888877776543
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.32 E-value=0.0098 Score=54.60 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005145 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (712)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (712)
-++.-+...+.+........++..+|..|...|+++.|++.|.++.+.... .......+..+..+....+++...
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v 92 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHV 92 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344444444445566777888999999999999999999999998876332 445678889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
..++.++-.+... +.+..........-|..++..++|.+|...|-.+..-+
T Consensus 93 ~~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 93 EKYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999998877 33333444455666777788899999998887765443
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.30 E-value=0.028 Score=57.31 Aligned_cols=206 Identities=14% Similarity=0.081 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (712)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~ 403 (712)
+..+...+.+.+...+..++...-....+..++-..|....+|+.-+++.+..-.+- .. .......+....|.++.
T Consensus 115 ~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-~~---~~~~~~~i~~~yafALn 190 (374)
T PF13281_consen 115 YSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-TC---DVANQHNIKFQYAFALN 190 (374)
T ss_pred HhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-cc---chhcchHHHHHHHHHHh
Confidence 333444555555554444443223344566677778888999998888877654441 11 11112335667788888
Q ss_pred H---cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 404 T---KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 404 ~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+ .|+.++|+..+..++. ......+.++..+|.+|-.. ...++|+.+|.++.++ .+
T Consensus 191 Rrn~~gdre~Al~il~~~l~-----~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~ 257 (374)
T PF13281_consen 191 RRNKPGDREKALQILLPVLE-----SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EP 257 (374)
T ss_pred hcccCCCHHHHHHHHHHHHh-----ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cc
Confidence 8 9999999999988653 23444556777778877532 2367778888877776 33
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH---HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENAL-RI---YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
....-.+++.++...|...+...-+++.. .+ ..+.. ........+.+..++.+..-.|++++|.+.+++++.+.
T Consensus 258 -~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 258 -DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred -cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33455677777777776444433333322 11 11110 11122334556678888888999999999999999874
Q ss_pred H
Q 005145 548 N 548 (712)
Q Consensus 548 ~ 548 (712)
+
T Consensus 336 ~ 336 (374)
T PF13281_consen 336 P 336 (374)
T ss_pred C
Confidence 3
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.28 E-value=0.00058 Score=45.78 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
+.++.++|.+|..+|++++|+.++++++.+.++..|+++|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46788999999999999999999999999999998888874
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.26 E-value=0.00077 Score=45.75 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 650 (712)
.++..+|.+|...|++++|+.+|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 9999999988875
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.23 E-value=0.024 Score=58.65 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=97.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC--------
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV-------- 511 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 511 (712)
.-..+..+...-++..++|+++ .|+.+.+|..||.-. ..-..+|+.+|+++++..+..+...
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3445677888889999999999 888888888877532 2346788888888888766543211
Q ss_pred --------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 512 --------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (712)
Q Consensus 512 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (712)
+..-...+...||.+..+.|+.++|++.++..++..+.. ....+..+|..++...+.|.++..++.+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 011124566789999999999999999999988765421 2345888999999999999999888776
Q ss_pred H
Q 005145 584 A 584 (712)
Q Consensus 584 a 584 (712)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.086 Score=47.74 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005145 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
..+...++..+...|++++|+..++.++.... +......+-.+|+.+...+|.+++|+..+..... +
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~ 155 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E 155 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence 34556778889999999999999999885432 1222234556899999999999999988876533 2
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
...+......|.++...|+-++|+..|++++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334566778899999999999999999999987
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.039 Score=49.86 Aligned_cols=101 Identities=15% Similarity=0.030 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
..+...++..+...|++++|+..++.++. ...+......+-..+|.+...+|.+++|+..+..... +.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 34556678889999999999999998872 2234445566778899999999999999988765432 34
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
.........|.++...|+-++|+..|++++...
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455667788999999999999999999999884
No 260
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.44 Score=50.09 Aligned_cols=218 Identities=11% Similarity=0.019 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005145 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (712)
Q Consensus 311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (712)
...-+..+...|+.+.|+..++.++...-+ .-....++.+|.++..+.+|..|-..+....+...-..
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------ 337 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------ 337 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence 566778888888899999999988873222 23456778899999999999999999888776643221
Q ss_pred HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhCC-CChhHHH----------------------HHHHH
Q 005145 391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIAND-QDAEVAS----------------------VDCSI 438 (712)
Q Consensus 391 ~a~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~----------------------~~~~l 438 (712)
+ .|..++ .++. ..|+.+.|-.+++.........+ +.|.... -++.+
T Consensus 338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 1 233333 3332 24466666666665544443311 1111100 11222
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005145 439 GDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 439 a~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
+.++... ....+.. ++..-...-.-.+.....--+..+|.++..+|+...|..+|..+++..... ..++...
T Consensus 416 ~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~ 489 (546)
T KOG3783|consen 416 AYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAV 489 (546)
T ss_pred HHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccc
Confidence 2222211 1111111 211111111111344556677888999999999999999999888653332 4456667
Q ss_pred HHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHH
Q 005145 517 ASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN 548 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 548 (712)
+.+++.+|.+|..+|. ..++..++.+|.+...
T Consensus 490 PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 490 PFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred cHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 8899999999999999 9999999999987653
No 261
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.55 Score=57.88 Aligned_cols=320 Identities=11% Similarity=0.011 Sum_probs=162.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
.+|.+-++.+.|.+|+-++++- .. .+... ..-..+..+-.+|...++++.-.-....-.. +|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence 6788889999999999999985 11 11111 1222355555699999999876655543111 121
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005145 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
+...-..+...|++..|..+|++++...+.... .+..+-......|.+...+.+.+-... ..+
T Consensus 1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~--------~~~g~l~sml~~~~l~t~i~~~dg~~~-----~~s 1514 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEK--------HHSGVLKSMLAIQHLSTEILHLDGLII-----NRS 1514 (2382)
T ss_pred ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCcccc--------chhhHHHhhhcccchhHHHhhhcchhh-----ccC
Confidence 223334566789999999999999877655321 122233333445555555544332210 111
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHH----------HHHcCCHH
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQ-------KALTAFKTNKGENHPAVASVFVRLADM----------YNRTGKLR 491 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~~ 491 (712)
+.....+..--.+....++++.-..+.- .+..+..-.......+....+..+... ....|-|.
T Consensus 1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~ 1594 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYV 1594 (2382)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHH
Confidence 1111111111122244555554444321 000000000000000000010000000 00111222
Q ss_pred HHHHHHHHHHHHH---------hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005145 492 ESKSYCENALRIY---------EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (712)
Q Consensus 492 ~A~~~~~~al~~~---------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (712)
.+.++.-+...+. .+...+.+......-|.+....-....+..+-+-.+++++-......+....++.+|.
T Consensus 1595 ~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wL 1674 (2382)
T KOG0890|consen 1595 RSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWL 1674 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHH
Confidence 3333322222111 1111111111111112222222112222344444455555444333344567889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
..|++....|+++.|..++-.|.+.. ...+....|..++..|+...|+..+++.+.....
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998887631 3478888999999999999999999999976543
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.025 Score=50.38 Aligned_cols=122 Identities=20% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (712)
+...|......++...++..+.+++.++....-+.... ..-.......+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~------------~~~ 62 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLRE------------LYL 62 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHH------------HHH
Confidence 34445556667888889999999988875443221110 0001111222222 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
.+...++..+...|++++|+..+++++.+ +|..-.++..+..+|...|+..+|+..|+++...+.+-+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 56677888999999999999999999999 899999999999999999999999999999988877543
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.0068 Score=60.58 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
+|..+.....+.+..+.|...|.+|+ ........+|...|.+-+. .++.+.|..+|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 45566667777777999999999996 3444455678888888666 56666699999999988 555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
....|......+...|+.+.|..+|++++..... ......+|......-...|+.+...++.+++.+..+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5677888888899999999999999999876322 1113567888888888999999999999999888665
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.035 Score=49.47 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccch-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 334 (712)
+...|......++.+.++..+++++.+....+-+..+ ...+.++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3334566667788899999999999887533322211 113345677888899999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
+.+ +|..-.++..+..+|...|+..+|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998887654
No 265
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.13 Score=54.49 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=134.7
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHhC
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV---------QKQVLG 343 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~~~~~~ 343 (712)
..|...|.+++|...---.+. ..-|..||.-....=+++-|.+.|.++..+ .+....
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv--------------~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT--------------DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred hhhhhccchhhhhccccccee--------------cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 456777888777543211111 111566666666666777777777665332 111111
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQM------ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
...|.. ..+|.++...|+|.+|.++|.+ |++++.+. -.+.++.-+...|..++-....++
T Consensus 630 ge~P~~----iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 630 GETPND----LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred CCCchH----HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHH
Confidence 111222 3467778888999999888864 34443322 234455566666666655555544
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q 005145 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 491 (712)
-.......+.+.. -|.++...|+.++|+... +-++++.+++ +......+..++..+.....+.
T Consensus 696 RA~WAr~~kePka-------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 696 RADWARNIKEPKA-------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHhhhcCCcHH-------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccc
Confidence 4333333332221 256677788888887653 4455555544 3333445555666666666666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 005145 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571 (712)
Q Consensus 492 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 571 (712)
-|-+.|.+.-.. ..+..++...++|.+|..+.++--+..+ .+++..|..+...
T Consensus 765 LAaeIF~k~gD~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~~----------dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL-----------------KSLVQLHVETQRWDEAFALAEKHPEFKD----------DVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHhccH-----------------HHHhhheeecccchHhHhhhhhCccccc----------cccchHHHHhhhh
Confidence 665555443221 2345566677888887766554333222 2444556666666
Q ss_pred CCHHHHHHHHHHH
Q 005145 572 GNYSDSYDSFKNA 584 (712)
Q Consensus 572 g~~~~A~~~~~~a 584 (712)
.+|++|.+.|.+|
T Consensus 818 DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKA 830 (1081)
T ss_pred hhHHHHHHHHHHh
Confidence 6666666666544
No 266
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0071 Score=56.17 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----------AVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
..++..-|.-++..|+|.+|...|+.|+...+.+.-...| .....+.+++.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888888776655322221 234578899999999999999999999998
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.. ++....+|+..|.++...=+.++|...|.+++++.+..
T Consensus 258 ~~---------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RH---------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hc---------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 88 56678999999999999999999999999999886654
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.04 E-value=0.011 Score=55.97 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 005145 404 TKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-----HPAVASVF 477 (712)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 477 (712)
....+++|++.|..|+......+ .+...+.++..+|++|..+|+.+....++++|++.+.+..... ......++
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34568888888888887666444 4457888999999999999999988899999988887764322 23456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 478 VRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
+.+|.++.+.|++++|..+|.+++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999998874
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.96 E-value=0.0024 Score=40.44 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+.+|+.+|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 367999999999999999999999999999
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.93 E-value=0.012 Score=52.49 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005145 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVPPEEIA 517 (712)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (712)
|+.|.+.++..... +|..+..+++.|..+..+.++ ++|+.-|++|+.+ .|...
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---------~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---------NPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----------TT-H
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---------CCchH
Confidence 45666666666666 788888899988888766443 4455555666666 56677
Q ss_pred HHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHH
Q 005145 518 SGLTDVSSIYESMNE-----------LEQAIKLLQKALKIYN 548 (712)
Q Consensus 518 ~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~ 548 (712)
.++..+|.+|..++. |++|..+|++|....|
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999987664 4445555555554443
No 270
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.90 E-value=0.039 Score=57.77 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=81.5
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 005145 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (712)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (712)
.+...|+...|++++..|+...+.... ..+.+||.++.+.|-.-.|-.++.+++.+.. ..+ ..++.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l~~~~ 681 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQD------VPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---LTFLS 681 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhc------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---hHHHh
Confidence 344578999999999999877654311 2456889999999988999999999998741 112 56788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005145 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 653 (712)
+|.+|..+.+.+.|++.|++|++. .|....+...|-.+-+
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC 721 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence 999999999999999999999998 6666665555544444
No 271
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.011 Score=54.90 Aligned_cols=112 Identities=17% Similarity=0.038 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc---ccchH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG---QEHAL------AKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 334 (712)
...++..-|+-++..|+|.+|...|..|+.......- |..+. .....+.+.+.|+...|+|-+++++....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999876543321 21211 12235788999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
+.. +|....+|+..|.++...-+.++|..-|.+++++.+..
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 888 78999999999999999999999999999999887543
No 272
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.86 E-value=0.79 Score=48.13 Aligned_cols=436 Identities=14% Similarity=0.070 Sum_probs=223.1
Q ss_pred ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005145 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (712)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a 291 (712)
+....+|.+...+..+.+.+-.+ - ++++.+.|++.+..+ |..+.++.......+...+|+....+|.++
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35577899999999998877766 4 999999999988765 333445555566777789999999999998
Q ss_pred hchhhhhhcccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH---------H
Q 005145 292 IEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH---------V 361 (712)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------~ 361 (712)
|.-.- .+..| ..|..+....|+...+.....+|.++.....|- ++.....|...+..+ .
T Consensus 80 LvkvL----------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 80 LVKVL----------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred HHHHh----------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHH
Confidence 86431 11222 234455556677777777777777766554442 233333343333222 1
Q ss_pred HhCCHHHHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------
Q 005145 362 QALQFSEAQKFCQMALDIH--------KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------ 427 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 427 (712)
...+.+.-.+.|++|+..- .+... -..........-.+-.....|..|...+++...+.+....
T Consensus 149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~--fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEA--FEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHH--HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 2235556666777776321 10000 0000000111112223344566676666665443332110
Q ss_pred ----Chh--HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHc
Q 005145 428 ----DAE--VASVDCSIGDTYLSLSRY----------DEAGFAYQKALTAFKTNKGENHPA----VASVFVRLADMYNRT 487 (712)
Q Consensus 428 ----~~~--~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~ 487 (712)
... ....|.++ +-+.+.+. ..-.-.|++++..+- .+|. ....+...+.++...
T Consensus 227 ~~~T~~e~~qv~~W~n~--I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~-----~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNW--IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG-----YHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred CCCChHHHHHHHHHHHH--HHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhhHHHHHh
Confidence 001 11222222 21221111 111223444444311 1222 233444556667777
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005145 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
|+...|...-.++..+++....+. .......++.++..-...- .++.-..++++++.+....+ + -++..+
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~----t--Lv~~~~ 372 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL----T--LVYCQY 372 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC----c--eehhHH
Confidence 776555555444444444321000 1112333333333322222 25555666777666544332 2 234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005145 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 644 (712)
-..-.+..-...|...|.+|-+.-+ ..++. .+...+- -|...++..-|...|+-.+.. +++....
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r---~~hhV---fVa~A~m-Ey~cskD~~~AfrIFeLGLkk--------f~d~p~y 437 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKR---TRHHV---FVAAALM-EYYCSKDKETAFRIFELGLKK--------FGDSPEY 437 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccC---Ccchh---hHHHHHH-HHHhcCChhHHHHHHHHHHHh--------cCCChHH
Confidence 5555556667778888888765311 11111 1222222 244578999999999999887 5555554
Q ss_pred HHHHHHHHHHccc-------hhhhCCC--Ch-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005145 645 YSNLAGTYDAIGR-------EEKLGTA--NP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 645 ~~~La~~~~~~g~-------~~~l~~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
-......+...++ .+.+.+. .+ .....|..+-..-..-|+...+. +.-++-....|
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~ 503 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence 4555556666666 2222222 22 23355666666666677777776 55555555444
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.013 Score=57.14 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
.+..+-.-|.-|++..+|..|+..|.++|.. ...+....+..|.+.|.+....|+|..|+.-+.+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3444444455555555555555555555443 11122334445555555555555555555555555554
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005145 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
.|....+++.=|.+++.+.++++|..+.+..+.+
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334455555555555555555555555544443
No 274
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.89 Score=47.92 Aligned_cols=248 Identities=13% Similarity=0.048 Sum_probs=144.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005145 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (712)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (712)
...+...+..+. +.+.+++........+.. .....-+.++...|+.+.|+..+..++. .....-....++
T Consensus 238 ~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~ga----~wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~f 307 (546)
T KOG3783|consen 238 ISFVLGTPNPDG--EECEKALKKYRKRYPKGA----LWLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVF 307 (546)
T ss_pred HHHHcCCCCccH--HHHHHHhHHHHHhCCCCc----cHHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHH
Confidence 334444454444 444444444433333222 2456678888888998888888887764 111223455678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHhcC
Q 005145 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA-DMYN--------RTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.+|.++..+.+|..|...+....+. ....--.|..++ .++. ..|+-+.|..+++....+....
T Consensus 308 E~aw~~v~~~~~~~aad~~~~L~de--------sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a 379 (546)
T KOG3783|consen 308 ERAWLSVGQHQYSRAADSFDLLRDE--------SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA 379 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhh--------hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence 8899999999999999998887776 222222233333 3332 2346666666666555544431
Q ss_pred CCCCCChhHH--------------------H--HHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHH
Q 005145 508 VPGVPPEEIA--------------------S--GLTDVSSIYESM--NELEQAIKLLQKALKIYNDA-PGQQSTVAGIEA 562 (712)
Q Consensus 508 ~~~~~~~~~~--------------------~--~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~ 562 (712)
+.+.|... . -+..++.++..- ...++.. ++....... ..+.....--+.
T Consensus 380 --~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~l 453 (546)
T KOG3783|consen 380 --GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYL 453 (546)
T ss_pred --cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHH
Confidence 11111100 0 012222222111 1111111 222222111 122233444567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Q 005145 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-INEAVELFEEARSI 629 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~ 629 (712)
.+|.++..+|+...|..+|...++.... ...++..++.+++.+|.+|..+|. ..+|..++.+|.+.
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEKESK-RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 8899999999999999999999876322 233455667899999999999998 99999999999876
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.79 E-value=0.0024 Score=43.30 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 482 (712)
.++..+|.+|...|++++|+..|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999998 8888888888875
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.73 E-value=0.033 Score=45.15 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005145 360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (712)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999987776543 123455678899999999999999999999999999999888888777776
Q ss_pred HHHH
Q 005145 439 GDTY 442 (712)
Q Consensus 439 a~~~ 442 (712)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
No 277
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.73 E-value=0.034 Score=45.07 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (712)
.....|+|..|++.+.+............ ....++.++|.++...|++++|+..+++++.+.++..+ ......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D--~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD--RRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC--HHHHHHHH
Confidence 34578999999999999988777666555 56777889999999999999999999999999998752 33444444
Q ss_pred HHHHHH
Q 005145 478 VRLADM 483 (712)
Q Consensus 478 ~~la~~ 483 (712)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 444443
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.73 E-value=0.88 Score=46.79 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH-HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-KFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
.+...|.++..++++.+|...|.+..+-. ...+.. .-+++. .+-.+|+ -+.+...+..+...++..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~-----~~~~f~lkeEvl~grilnAff-----l~nld~Me~~l~~l~~~~-- 75 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEK-----ESSPFLLKEEVLGGRILNAFF-----LNNLDLMEKQLMELRQQF-- 75 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHh-----hcchHHHHHHHHhhHHHHHHH-----HhhHHHHHHHHHHHHHhc--
Confidence 34456899999999999999999887654 222111 101222 2222332 234444445554444443
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC---CH----HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---SL----EEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~----~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
|.........|...++.++|.+|++.+..-.........+- .. .....-...+.++...|++.++...+.+
T Consensus 76 --~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 76 --GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred --CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 34455666778889999999999988765544432222110 00 0011123357788899999999999998
Q ss_pred HHHHHHh
Q 005145 418 ASMTMIA 424 (712)
Q Consensus 418 al~~~~~ 424 (712)
.+..+-.
T Consensus 154 i~~~llk 160 (549)
T PF07079_consen 154 IIERLLK 160 (549)
T ss_pred HHHHHhh
Confidence 8765544
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.69 E-value=0.0042 Score=39.26 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 669 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 669 ~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+.+++++|.+|..+|++++|+ ..|+++|+.+|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence 467999999999999999999 999999999985
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.69 E-value=0.0044 Score=39.11 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.++..+|.++..+|++++|+.+|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.64 E-value=0.0049 Score=39.58 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
++..||.+|..+|++++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999999977443
No 282
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.63 E-value=0.042 Score=54.96 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhCCCC
Q 005145 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (712)
.+|..+.....+.+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|..+|+.+++.++..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~---------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--- 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD---------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--- 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---
Confidence 35677778888888899999999999732 11234567788888666 567777999999999988765
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-FGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
...+......+...++.+.|..+|++++..+ .... ...+|......-...|+.+....+++++.++
T Consensus 70 ----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 70 ----PDFWLEYLDFLIKLNDINNARALFERAISSL------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp ----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2466666788889999999999999998742 1121 2357778888888999999999999998887
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.61 E-value=0.0051 Score=38.80 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 669 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 669 ~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+.+++.+|.++..+|++++|+ +.|+++++.+|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence 457899999999999999999 999999999985
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.58 E-value=0.0018 Score=40.89 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 005145 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (712)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (712)
+|++++++ +|..+.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.54 E-value=0.0066 Score=38.95 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
++..||.+|...|+|++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999877654
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.47 E-value=0.0066 Score=37.96 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
++++.+|.++.+.|++++|+ ..|+++++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence 46889999999999999999 999999999995
No 287
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.42 E-value=0.033 Score=49.79 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 005145 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL---EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (712)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (712)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++.++++.|+.-+.......+....++..+|.
T Consensus 7 FE~ark~aea~y~~---------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45566666666555 455577788888887776544 234444444444333332223333578888999
Q ss_pred HHHHcC----CHHHHHHHHHHHHHHHHHh
Q 005145 567 MYYMLG----NYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 567 ~~~~~g----~~~~A~~~~~~al~~~~~~ 591 (712)
+|..++ +..+|..+|++|...++..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 888764 4556777777776665543
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.36 E-value=0.0031 Score=39.80 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005145 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (712)
Q Consensus 330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (712)
+|++++++ +|....+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37788888 79999999999999999999999863
No 289
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=1.3 Score=47.51 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-----------HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 353 CRYLAEAHVQALQFSEAQKFCQMALDI-----------HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
|..||.-....-+++-|.+.|.+...+ .++.+. .+ --..+|.++...|+|.+|...|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge--~P----~~iLlA~~~Ay~gKF~EAAklFk~~--- 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE--TP----NDLLLADVFAYQGKFHEAAKLFKRS--- 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC--Cc----hHHHHHHHHHhhhhHHHHHHHHHHc---
Confidence 455555555556666666666554321 111111 11 1235677888888888888887653
Q ss_pred HHhCCCChhHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 005145 422 MIANDQDAEVASV-----DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (712)
Q Consensus 422 ~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (712)
+........ .+.+++-+...|..++-..+.++-.+.+.... .|. .-|.++...|+.++|+..
T Consensus 659 ----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk------aAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 659 ----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK------AAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH------HHHHHhhcccchhhhhhh
Confidence 221111111 23445555566665555555554444433332 232 235667778888888765
Q ss_pred H------HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005145 497 C------ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (712)
Q Consensus 497 ~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (712)
. +-++++.++. .......+..++..+.....+--|.+.|.+.-.+ ..+..++..
T Consensus 726 ~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHve 785 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKL-----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHVE 785 (1081)
T ss_pred hhcccHHHHHHHHHhhc-----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhheee
Confidence 3 4455555443 1222344555555555666665665555543221 234456677
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (712)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 627 (712)
.++|.+|..+.++ +|.....+++-.|+.+....++++|.+.|.+|-
T Consensus 786 ~~~W~eAFalAe~-----------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 786 TQRWDEAFALAEK-----------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccchHhHhhhhh-----------CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 7888888765544 344445677788888888888888888886653
No 290
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.28 E-value=1.3 Score=43.43 Aligned_cols=93 Identities=13% Similarity=-0.053 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005145 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (712)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (712)
..-...++++.+|+..+..... ......+...+|..|+..|++++|+.+|+.+...+...+-......++..+..|+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3455678889999988877664 23344567789999999999999999999998888888888888889999999999
Q ss_pred HcCCHHHHHHHHHHH
Q 005145 444 SLSRYDEAGFAYQKA 458 (712)
Q Consensus 444 ~~g~~~~A~~~~~~a 458 (712)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998887766544
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.32 Score=47.26 Aligned_cols=136 Identities=19% Similarity=0.116 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
.....+..+......|+ +.+|...+..++... ++...+...++.+|...|+.+.|...+...-.-.
T Consensus 133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---- 198 (304)
T COG3118 133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---- 198 (304)
T ss_pred HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence 33455667778889987 999999999999876 3335677789999999999999999998643221
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (712)
.......+.+...+..-....++..... +.+.. +|....+-+.+|..+...|+.+.|.+.+-..+..
T Consensus 199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l~----~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 199 -QDKAAHGLQAQIELLEQAAATPEIQDLQ----RRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCCHHHHH----HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111100111112222222222222222 22222 6778888999999999999999999988776665
Q ss_pred HHh
Q 005145 380 HKD 382 (712)
Q Consensus 380 ~~~ 382 (712)
...
T Consensus 266 d~~ 268 (304)
T COG3118 266 DRG 268 (304)
T ss_pred ccc
Confidence 433
No 292
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=1.6 Score=44.59 Aligned_cols=194 Identities=14% Similarity=-0.001 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005145 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
....+..+..+.++....++..|..++.+++-.+.... .......++..++.++..-+..-.+..+.-.++.......
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~--~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGC--NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 34556677789999999999999999999876654433 3344566777888888888888888887777777666666
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHH
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY------NRTGKLRESKSYCENA 500 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~a 500 (712)
.+...+.+-..++..+...|-.+.|+..+..++....-.++-+.. +.+++..+.++ ....+++.+..++++|
T Consensus 348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr--ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A 425 (482)
T KOG4322|consen 348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR--ARAIFVFANCTLAFALSCANESLDGFPRYLDLA 425 (482)
T ss_pred cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc--ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHH
Confidence 677777778889999999999999999999999886655543222 22222111111 2556788888889998
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHH
Q 005145 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE---QAIKLLQKALKIY 547 (712)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~ 547 (712)
-.++.+. +-+..+..+.+.++..|-..|+.+ ++...|+++....
T Consensus 426 ~~~f~kL---~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~l 472 (482)
T KOG4322|consen 426 QSIFYKL---GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYL 472 (482)
T ss_pred HHHHHHc---cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Confidence 8888774 335567888999999999999865 4555566655443
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.19 E-value=2.3 Score=45.56 Aligned_cols=397 Identities=13% Similarity=0.043 Sum_probs=226.9
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005145 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (712)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 287 (712)
..+.......|-.-..+...|..-++.|. .+.++..|++++.-+... .+ . ....++.+--..|+.+.-...
T Consensus 66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S------vd-l-W~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS------VD-L-WLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH------HH-H-HHHHHHHHhccCCCHHHHHHH
Confidence 45566677889999999999999999996 999999999999876211 11 1 122234444456777887888
Q ss_pred HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHhCC
Q 005145 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQ 365 (712)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~ 365 (712)
|++|.......+-. ++ .|...-..-..++++..-...|++.+++-...+ +....-+..+..- ......
T Consensus 137 fe~A~~~vG~dF~S-~~-----lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 137 FERAKSYVGLDFLS-DP-----LWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHhcccchhc-cH-----HHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcC
Confidence 88888775322111 11 233333334566777777778887777621100 0000000000000 000112
Q ss_pred HHHHHHHHHHHHH----------------HHHhcCCC-CCHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 366 FSEAQKFCQMALD----------------IHKDNGSP-ASLEEAA-----DRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 366 ~~~A~~~~~~al~----------------~~~~~~~~-~~~~~a~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
.+++...-..... .......+ ....... .....-.++.......+.+-.++..+...-
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 2222222111110 00000110 0000010 011111122223333333444444332111
Q ss_pred --hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 424 --ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 424 --~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
..+..+.....|......-...|+++...-.|++++-- -......|...+......|+.+-|...+..+.
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 11233444555666667777899999999999999876 34456788888998888999999999999999
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
++..+. ...+...-+.+-...|++..|...+++...-++.. ..+-...+....+.|+.+.+.. +
T Consensus 359 ~i~~k~--------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~~~-~ 422 (577)
T KOG1258|consen 359 KIHVKK--------TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDANY-K 422 (577)
T ss_pred hhcCCC--------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhhhH-H
Confidence 886542 34556667778888999999999999988765332 2233334455667788877774 2
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005145 582 KNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
...+.... .+..........+...+.. +.-.++.+.|...+.+++++ .|+....+..+..+....+
T Consensus 423 ~~l~s~~~-~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIY-EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhc-ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 22222211 1222223334455555543 44567899999999999998 7777666666666555544
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.15 E-value=0.67 Score=46.80 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=114.7
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
......+++..|...+..+-... .......++.+|..- .+..+|..+|..+.+. .
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g 107 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------G 107 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------c
Confidence 33445678888888888876532 113467777777653 4578888888855433 4
Q ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 005145 349 VGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLVL 417 (712)
Q Consensus 349 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-------~~~~A~~~~~~ 417 (712)
...+.+.||.+|.. ..++.+|..+|.++........ ..+...++.+|..-. +...|+..|.+
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence 55677889998887 4589999999999987532210 224667777776542 23367888877
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 005145 418 ASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (712)
+.... ...+...+|.+|.. ..++.+|..+|.++-+. .. ......++ ++...|
T Consensus 181 aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 181 AAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 75321 45677788877755 44889999999999886 22 66777888 666655
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.11 E-value=0.012 Score=37.13 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.++..+|.+|..+|++++|..+|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999999998
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.99 E-value=1.1 Score=45.28 Aligned_cols=183 Identities=20% Similarity=0.181 Sum_probs=123.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (712)
.....+++..|...+..+.. .........++.+|.. ..+..+|..+|+.+.+ .....+
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~--------~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAE--------LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccccHHHHHHHHHHhhh--------cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 33456778888888877642 1112566677777765 3467888888885543 334567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc-------cHHHHHHHHHHHHH
Q 005145 477 FVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-------ELEQAIKLLQKALK 545 (712)
Q Consensus 477 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~ 545 (712)
.+.||.+|.. ..++.+|..+|.++...- .... ..+...++.+|..-. +...|..+|.++..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 7889999887 458999999999998872 2121 344677777777642 23368888887766
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC-------
Q 005145 546 IYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY------- 614 (712)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g------- 614 (712)
.. ...+...+|.+|.. ..++.+|..+|.+|.+. .+ ...++.++ ++...|
T Consensus 184 ~~---------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 184 LG---------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred hc---------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCchhhh
Confidence 54 13467788888765 34899999999999874 11 46777788 666555
Q ss_pred --------CHHHHHHHHHHHHHH
Q 005145 615 --------SINEAVELFEEARSI 629 (712)
Q Consensus 615 --------~~~~A~~~~~~al~~ 629 (712)
+...|..++..+...
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHc
Confidence 666677777666554
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.97 E-value=0.018 Score=36.22 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999876
No 298
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=2.3 Score=43.17 Aligned_cols=144 Identities=12% Similarity=0.065 Sum_probs=97.7
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005145 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (712)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (712)
+.+.+ +.+|..+-+..+.-..-.....-+.-.+.+|+.+..+|...|+...-...+...+....- +. +........
T Consensus 137 ~d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rh-d~e~qavLi 212 (493)
T KOG2581|consen 137 IDQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--RH-DEEGQAVLI 212 (493)
T ss_pred HhhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cC-cchhHHHHH
Confidence 33454 888888877655443221111222445677888888999999987777777666655321 11 112234456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
+.|-..|...+.|+.|.....++.--- ...+...+..++++|.+...+++|..|.+++-+|+...++.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 777888999999999888777654110 01123678889999999999999999999999999888763
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.74 E-value=1 Score=46.66 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--------------------CCChhHHHHHHHHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--------------------VPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~~~~~~~~~~la~~~~~ 529 (712)
+|..+.++..++.++..+|+...|.+++++|+-.++..+.. ..+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999998776633210 1122345566777788889
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005145 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (712)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~ 609 (712)
.|-+..|.++.+-.+.+.+.. ++ ..++..+-....+.++|+--+++++......... .-..+....+.++.+
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA 187 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence 999999999999998886642 11 1344555566667788877777777654421000 000112355667788
Q ss_pred HHHhCCH---------------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005145 610 CVQRYSI---------------NEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (712)
Q Consensus 610 ~~~~g~~---------------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 647 (712)
+...++. +.|...+.+|+.. +|.....+..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~--------fP~vl~~Ll~ 232 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR--------FPWVLVPLLD 232 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHH--------hHHHHHHHHH
Confidence 8888887 8999999999998 7766554433
No 300
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.71 E-value=3.7 Score=44.06 Aligned_cols=376 Identities=10% Similarity=-0.038 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
|.....+...|..-.+.|..+.+...|++++.-. +-. +..| ..++.+-...|+.+.-...|++|+....
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p~S----vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG- 145 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----PLS----VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG- 145 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----hhH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc-
Confidence 5556666777888899999999999999998765 211 1122 2233333456777777777777777632
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH------cCCHHHHHHH
Q 005145 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET------KGDHEAALEH 414 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~------~g~~~~A~~~ 414 (712)
. +-.....|-..-..-..++++..-...|++.+++-..... .++..=.-+.. .-..+++...
T Consensus 146 ---~-dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--------~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 146 ---L-DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--------RHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred ---c-chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--------HHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 2 2222334444444446677888888888888876432211 11110000000 1111111111
Q ss_pred HHHHHHHHHhCCCChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005145 415 LVLASMTMIANDQDAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (712)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (712)
-...... ............+ ..+-.+-...+.++++...+.+...+ .=.++...-...+.
T Consensus 214 ~~~~~~~-~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 214 RSDVAER-SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK 274 (577)
T ss_pred hhhHHhh-hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence 1100000 0000000000000 00000000111222222222222221 11223333444555
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005145 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (712)
+..++..+...-... ....+.....|......-...|+++...-.|++++--+... ...|...+......|+
T Consensus 275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD 346 (577)
T ss_pred HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence 555665554322211 11223345567777777888999999999999998766544 2577788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005145 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (712)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 653 (712)
..-|...+..+.++... ..+ .+...-+......|++..|...+++...- -|....+-..-+....
T Consensus 347 ~~~~~~~~~~~~~i~~k----~~~---~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVK----KTP---IIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER 411 (577)
T ss_pred hhHHHHHHHhhhhhcCC----CCc---HHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence 99998888888776422 222 45555677788889999999999987765 4666665555555555
Q ss_pred Hccchhh------------hCCCChhH-HHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhccc
Q 005145 654 AIGREEK------------LGTANPDV-DDEKRRLAELLKE-AGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 654 ~~g~~~~------------l~~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~l~~~l~~~p~ 702 (712)
..|+... -+..++.. ...+...+..... .++.+.|. ..+.++++..|.
T Consensus 412 r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 412 RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD 473 (577)
T ss_pred HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence 6665111 11223322 2234444544443 56777777 888888877764
No 301
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.67 Score=45.11 Aligned_cols=167 Identities=14% Similarity=0.022 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005145 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (712)
-..-+.-....|++.+|...|..++....+ ...+...++.+|...|+.+.|...+...-.-....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~------ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE---------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK------ 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcc---------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh------
Confidence 344556677889999999999999998433 46778899999999999999988776432111110
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
....+.....++.+.....+...+-.++-. + +....+-+.+|..+...|+.++|++.+-..+. +-.+.
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa------d---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~---~d~~~ 269 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAA------D---PDDVEAALALADQLHLVGRNEAALEHLLALLR---RDRGF 269 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcccc
Confidence 001111112233333333332222222211 1 22236778899999999999999887765444 44443
Q ss_pred CChhhHHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHHHHH
Q 005145 637 YHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELL 679 (712)
Q Consensus 637 ~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la~~~ 679 (712)
.+.. +...|-.++. .+++.+|........|+.++
T Consensus 270 ~d~~---~Rk~lle~f~------~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 270 EDGE---ARKTLLELFE------AFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred cCcH---HHHHHHHHHH------hcCCCCHHHHHHHHHHHHhh
Confidence 3333 3334444443 34467776666666666554
No 302
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.43 E-value=2.9 Score=40.91 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 005145 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (712)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~ 610 (712)
......+.++.+|+..+... +.......+...+|..|+..|++++|..+|+.+...+++-+- ......++..+..|+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~-~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW--~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKY-GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW--WSLLTEVLWRLLECA 228 (247)
T ss_pred chHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHH
Confidence 34556788999999988876 556666677889999999999999999999999877765432 344567888889999
Q ss_pred HHhCCHHHHHHHHHH
Q 005145 611 VQRYSINEAVELFEE 625 (712)
Q Consensus 611 ~~~g~~~~A~~~~~~ 625 (712)
...|+.+..+.+.-+
T Consensus 229 ~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLE 243 (247)
T ss_pred HHhCCHHHHHHHHHH
Confidence 999998887765443
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.34 E-value=0.83 Score=47.30 Aligned_cols=162 Identities=14% Similarity=-0.017 Sum_probs=116.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHH
Q 005145 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANG--------------------KPSLELVMCLH 269 (712)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~--------------------~~~~~~~~~l~ 269 (712)
+......+|-....|++++.++..+|+ +..|.++.++||-.++..... ..+.....+++
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 344557889999999999999999997 999999999999888743210 11133455677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
.....+.+.|-+..|.++.+-.+.+. +. +|.. +++.+-....+.++|+--+.+++.......+. ....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~ 176 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL 176 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence 77888899999999999999999987 44 5443 35666666677788887777777655421100 0001
Q ss_pred HHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHhc
Q 005145 349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN 383 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 383 (712)
.....+.++.+++..++- +.|...+.+|+..+|..
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 224556677788888887 89999999999888653
No 304
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=3.4 Score=40.78 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (712)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~ 403 (712)
-++-++-+.+.++-..+.+| ......++.+.|..|.+.|+-+.|.+.+.+..+..-..+. ..........+|.+|.
T Consensus 80 neeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~--kiDVvf~~iRlglfy~ 155 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH--KIDVVFYKIRLGLFYL 155 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHhhc
Confidence 34445556666655555433 2567889999999999999999999999988876655543 2444445556676664
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (712)
+.+---+.+++|-.+++.+++....-..-...|.......+|.+|..+|-.++..+..
T Consensus 156 ---D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 156 ---DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred ---cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4555555666676777777876666566566677777888899998888887765443
No 305
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=4 Score=41.55 Aligned_cols=142 Identities=17% Similarity=0.089 Sum_probs=104.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005145 361 VQALQFSEAQKFCQMALDIHKDNG-SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
+...++.+|.++-...+.-..... ..-+...+.+|+.+..+|...|+...-...+..-+.......+....+...+.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 345778888877766554322111 1122345678889999999999988877777777766666667777888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..|...+.|+.|.....++.-- .. ..+...++.++.+|.+..-+++|..|.++|.+|+.....
T Consensus 217 r~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 9999999999998877665311 00 013467888999999999999999999999999988543
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.12 E-value=4.8 Score=41.68 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH--HHHHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK--LLQKALKI 546 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~ 546 (712)
....+.-+..-|.-+++.|. -++|+.+++.+++...- +. .+ .+....+ -...|.+|+. .+.+.+.+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y------D~---ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY------DI---EC-ENIVFLF-VKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc------cH---HH-HHHHHHH-HHHHHHHHHhhhhHHHHHHH
Confidence 44455666677778888887 77888888888876311 11 11 1111111 1223344332 12222222
Q ss_pred ---HHhCCCCCC---cHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005145 547 ---YNDAPGQQS---TVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (712)
Q Consensus 547 ---~~~~~~~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 618 (712)
..+. |..+ .-..+-+.| |..++.+|+|.++.-+-.=..++. | ...++..+|.+.....+|++
T Consensus 444 e~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia-------P--S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 444 EDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-------P--SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-------C--cHHHHHHHHHHHHHHhhHHH
Confidence 2222 3322 122233333 456778999999988776666552 2 23789999999999999999
Q ss_pred HHHHHHH
Q 005145 619 AVELFEE 625 (712)
Q Consensus 619 A~~~~~~ 625 (712)
|..++..
T Consensus 514 A~~~l~~ 520 (549)
T PF07079_consen 514 AWEYLQK 520 (549)
T ss_pred HHHHHHh
Confidence 9988765
No 307
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=4.9 Score=41.25 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
-...+......+.++....++..|..++++..-.+.+ +........++..++.++.+-+..-.+..+.-.++....+
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 4445667778999999999999999999998877655 4445567778888888888888888888888777777665
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005145 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----FGVALNQMGLACVQRYSINEAVELFE 624 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~ 624 (712)
. ..+...+..-..++..+...|..+.|+..+..++......|.-.... .+.++..-+..+ ...+.+.+.++++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 44444455566788899999999999999999998765544322110 111111112222 4456777888888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 625 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+|-.++.++.- |....++.+-.|..|...|+
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd 454 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGD 454 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcC
Confidence 88887776633 66677777888888877776
No 308
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.00 E-value=0.012 Score=57.55 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005145 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
+.-.+..|.++.|+++|..++.+ +|..+..+...+.++..+++...|+.-|..++.+ +++.+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------n~Dsa~ 183 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---------NPDSAK 183 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc---------Cccccc
Confidence 33445678899999999999998 8999999999999999999999999999999998 566677
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005145 519 GLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
.|-..+.....+|+|++|..++..+.++.
T Consensus 184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 184 GYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 88889999999999999999999998763
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.98 E-value=0.055 Score=33.62 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+++.+|.++...|++++|+..|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999987
No 310
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.90 E-value=0.02 Score=58.98 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005145 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
+-+.-++.-++|+.|+..|.+|+++ +|..+..+.+.+..+.+.+++..|+.-+.+|+++ .|..
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---------dP~~ 71 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---------DPTY 71 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc---------Cchh
Confidence 4456677788999999999999998 8888888888999999999999999999999988 5667
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
..+|+..|.+....+++.+|+..|+....+.+..
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 8889999999999999999999998888776654
No 311
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.78 E-value=3.3 Score=44.07 Aligned_cols=178 Identities=15% Similarity=0.048 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhc
Q 005145 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY-------DEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 466 (712)
....||..++..|+|+-|...|+.+..-+.........+.++-..|.+.+..+.. +....+++.|+..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4678999999999999999999998876665555556666777777777776643 477788888888877732
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cCCCCCCChhHHHHHHHHHHHH--HHcccHHHHHHHH
Q 005145 467 GE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLL 540 (712)
Q Consensus 467 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~ 540 (712)
.+ .......+....+.++...|.+.+|...+-+.....- +.. ..-..+..+..+|.+| .....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l---~~~~~alllE~~a~~~~~~~~~~-------- 358 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL---RPFGSALLLEQAAYCYASLRSNR-------- 358 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh---hhHhhHHHHHHHHHhhcccccCC--------
Confidence 11 1235566777788888889998888777666655421 100 0001334444555555 11100
Q ss_pred HHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 541 QKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 541 ~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
...+. ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus 359 --------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 359 --------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred --------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00000 0111222334577889999999999999999998763
No 312
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=7.8 Score=41.90 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
..++.+.|..+++..+ |..++++|...+..+.. ..-+...+.....|+.||..+.+.+.|.+++++|-+..
T Consensus 354 H~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~---D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d----- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIIS---DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD----- 424 (872)
T ss_pred HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----
Confidence 3466677888888876 99999999999877622 22235568888999999999999999999999998765
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 339 (712)
+..+.. -..+-.+....|.-++|+...........
T Consensus 425 ~~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 334332 34455666778889999998888776643
No 313
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.60 E-value=0.049 Score=56.18 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (712)
+-.-+.-.+.-+.|+.|+..|.+|+++.++. +..+.+.+.++.+.+++..|+.-+.+|+++ .+..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc-------a~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC-------AIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcc-------eeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 4455667778889999999999999987655 235556778899999999999999999986 3556
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
..+|..-|.++...+.+.+|+..|+....+ .|+...+...+..|-....+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999998888 77777777777666544333
No 314
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.53 E-value=3 Score=44.34 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRA 590 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~ 590 (712)
.....||.+++..++|+-|...|+.+..-+... ......+.++...|.+++..+.. ++...+++.|+..+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 346789999999999999999999988866543 22334555666667777766643 4777888888888877
Q ss_pred hCC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHH--HHccchhhhCCC
Q 005145 591 IGE---RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTY--DAIGREEKLGTA 664 (712)
Q Consensus 591 ~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~p~~~~~~~~La~~~--~~~g~~~~l~~~ 664 (712)
... ..+.....+....+.++...|.+.+|...+-+..... .+.+++ -..+-.+..+|.+| .........+..
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccchh
Confidence 321 1122344577777888889999888887766655442 111110 01556777788888 322110000011
Q ss_pred ChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 665 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 665 ~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
....+--+..-|.-|.++|+...|. ..|..++..+..
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~-rcy~~a~~vY~~ 402 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHAL-RCYKQALQVYEG 402 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhCC
Confidence 2233334445578899999999999 999999887654
No 315
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.52 E-value=0.03 Score=55.01 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=82.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005145 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (712)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (712)
+.-.+..|.++.|+++|..++ ...+..+..|...+.++..+++...|+.-+..++.+ +++.+.-|-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai------~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAI------ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHHHhcCcchhhhhccccccc------ccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 444556788999999999998 578888999999999999999999999999999999 888888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 479 RLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..+.....+|++.+|...+..+.++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 9999999999999999999999887
No 316
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.22 E-value=6.2 Score=38.87 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=116.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005145 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (712)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (712)
.+++|++|++.+... +..+.+.|++..|.++..-.++.+.+... +.......+++.+
T Consensus 2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 456777777766554 34455566666666666555555555432 2222233455555
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH-----------HHHHHhCC
Q 005145 484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP 551 (712)
Q Consensus 484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~ 551 (712)
+...+.-+ +-..+..++++.... +......+..+..+|..|.+.|++.+|..+|-.. +......
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence 55554332 355667777777622 3334456778999999999999999999887421 1111111
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------CCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005145 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG----------ERKSAFFGVALNQMGLACVQRYSINEAVE 621 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 621 (712)
+.+............-|...++...|...+..-++.+.... ....+.+-.++.. ..-++.++ ..
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lL--l~t~e~~~----~~ 208 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLL--LLTCERDN----LP 208 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHH--HHHHHHT-----HH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHH--HHHHhcCc----HH
Confidence 33333333333444567778999999998888777643321 0112222122221 22233333 45
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005145 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 622 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
.|....+.++..+.. +|.....+..+|..|...
T Consensus 209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCC
Confidence 666666655554432 677888888899888864
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.22 E-value=0.14 Score=32.96 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 478889999999999999999999999998887654
No 318
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=3.7 Score=39.71 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 005145 408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT 487 (712)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 487 (712)
-++-++-+.+.++..+..+.......++.++|..|.+.++.+.+.+++.+.+.-....+- ..+...+...||.+|..+
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhccH
Confidence 344455555555555544445677888999999999999999999999888776554432 344555666777777655
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.=..+.++.....++ + |.+....-..-...|.......++.+|-.++...+..+..
T Consensus 169 ~vV~e~lE~~~~~iE---k---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 169 KVVEESLEVADDIIE---K---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHH---h---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 444444444444443 3 4444444444445566666777888888888777665543
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.17 E-value=5.7 Score=40.59 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005145 470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (712)
+|....+|..+.......-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78888888888776554432 34456677777776 2233344444445555666777777
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------ChHHHHHHHHHH
Q 005145 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG 607 (712)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~lg 607 (712)
+.+++++...+.. ..+...|...-......-.+......|.+++..+....... ......++..+.
T Consensus 86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 7777777764332 22222222222222233468899999999999887654332 233456777888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 005145 608 LACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~ 629 (712)
....+.|..+.|+..++-.+++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHH
Confidence 8888999999999999999987
No 320
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=6.3 Score=38.22 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005145 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (712)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (712)
.-++-++-+.+.++-.+...+ ....+.++.++|..|.+.++.+.+.+++.+.+......+...+...+...+|.+|..
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 344556666666655554442 355677899999999999999999999999988777777777777777788888866
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
+.-.++.++.....++. |.+....-..-...|.......+|.+|-.++-.++..+..
T Consensus 168 ~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 168 RKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 65555555544444443 2223333333344555666677889998888888877654
No 321
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.96 E-value=6.1 Score=38.20 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 574 YSDSYDSFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 574 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
.+.|...|++|+.++.. +.+.+|..++.+++.-.-.|.-.|+.++|+.+.++|++-.-..++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 47899999999999998 455544444444444334456689999999999999887665544
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.92 E-value=6.8 Score=40.07 Aligned_cols=148 Identities=8% Similarity=0.002 Sum_probs=96.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005145 426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (712)
..+|....++..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++.
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455555555555544333221 34556677777776 566666666666677777788888
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHH
Q 005145 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA 562 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~ 562 (712)
..-+++++..... .+..-..|...-......-.+......|.+++.......... ..+..++.
T Consensus 85 ~~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 8888888887322 333333333333333334468889999999988776543321 24556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 563 QMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+.......|..+.|+..++-.+++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8888889999999999999999886
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.80 E-value=1.1 Score=34.03 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005145 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (712)
..-|.-++...+.++|+..+.+++... .+.+....++..+..+|...|+|.+++.+...-++++.+..
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555667788899999999988543 45667888899999999999999999999988888877764
No 324
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.62 E-value=0.93 Score=37.22 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005145 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL----SRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
++.-++..|++-+|++..+..+.... ........+..-|.++..+ .+.+-=..++.-+++.+.+...- .|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~---~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG---EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc---CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH
Confidence 35678899999999999998875432 2232234555566666543 34443334444444443332211 6777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+..++.+|.-+...--|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777776655555555665555555544
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.60 E-value=0.82 Score=34.79 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005145 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
...-|.-++...+.++|+..+.++++.... .+....++-.+..+|...|+|.+++.+..+-+++.....+|
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344555567888999999999999987433 56778889999999999999999999998888887766543
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=4.4 Score=36.19 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH--HHHHH
Q 005145 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG--VYSNL 648 (712)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~--~~~~L 648 (712)
.+..++|+..|..... .+-..-+ ..+....|.+..+.|+...|+.+|.++-.. ...|.... +...-
T Consensus 71 ~~k~d~Alaaf~~lek----tg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----TGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----cCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence 4556667666655433 2222222 367888999999999999999999987653 22343332 33334
Q ss_pred HHHHHHccc--------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005145 649 AGTYDAIGR--------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 649 a~~~~~~g~--------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
|.++...|- +...++.+|-...+...||..-.+.|++.+|+ ..|+.+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~-~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK-SWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH-HHHHHHHc
Confidence 455555555 23334678888889999999999999999999 99988765
No 327
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.43 E-value=11 Score=39.08 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005145 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
+..+..++.....+...++-+.|+...++++...+ . ..+.++.+|....+-+.-..+|+++.+...+.
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--------s----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--------S----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--------c----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 33455666666667778888999999988886642 1 25678888888888888888888887654432
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
+........ -...|+++...+++-+-.... ..++..+-..-.+..-.+.|...|-++...
T Consensus 367 ys~~~s~~~---------s~~D~N~e~~~Ell~kr~~k~-----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 367 YSMGESESA---------SKVDNNFEYSKELLLKRINKL-----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred Hhhhhhhhh---------ccccCCccccHHHHHHHHhhh-----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 211110000 001233422222222211100 112222233333444466677777666421
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
- -.+.+. .+++.+ .-|...|++.-|...|+-.+.. .++........-..+...++-..|..+|+.++
T Consensus 427 ~-~~~h~v---yi~~A~-~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 427 G-IVGHHV---YIYCAF-IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred C-CCCcce---eeeHHH-HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 1 011111 111111 2355689999999999888876 55545455555566778899999999999988
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
....+. ..-.+|..+-..-..-|+...+..+-++...+.+
T Consensus 494 ~r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 494 ERLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 775541 2344555565566666777666666555555544
No 328
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.41 E-value=1.7 Score=44.11 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005145 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (712)
.++..+|..|...|+++.|++.|-++...+.. .......+.++-.+-...|+|..-..+..+|............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 35889999999999999999999998777644 3567788889989999999999888888887765211000000
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005145 389 LEEAADRRLMGLICETKGDHEAALEHLVLA 418 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~a 418 (712)
...+.+...-|.+....++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000123444566666677899988888655
No 329
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=7.1 Score=38.61 Aligned_cols=127 Identities=16% Similarity=0.055 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 005145 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (712)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (712)
+.+.++-...+........++.+.|..|.+.|+-+.|++.+.+..+.....+- .-+.......+|.+|... +--.
T Consensus 87 ld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~--kiDVvf~~iRlglfy~D~---~lV~ 161 (393)
T KOG0687|consen 87 LDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH--KIDVVFYKIRLGLFYLDH---DLVT 161 (393)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHhhccH---HHHH
Confidence 33333333333345567788899999999999999999999888776554431 345566667777777554 3344
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
+..++|-.++++ |.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus 162 ~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 162 ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 445555555555 5444444444445566666777888888888777665443
No 330
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.11 E-value=6 Score=48.35 Aligned_cols=223 Identities=12% Similarity=0.023 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---------------------
Q 005145 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--------------------- 531 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------------------- 531 (712)
..+....+|.++...|++.+|+..|.+|+.+.+. ..++-+.+.++-.++.+..-.+
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~---~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS---SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh---cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 4567778899999999999999999999999887 4455556666665554432110
Q ss_pred ------------------------------------------cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005145 532 ------------------------------------------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (712)
Q Consensus 532 ------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (712)
.+++|+.+|.++.....+. -...-..++...++.++.
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~-~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY-VPQLVYSEACLRFARFLV 396 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc-CcchHHHHHHHHHHHHHH
Confidence 1334444444443222211 122234456667777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 570 MLG--------------------NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 570 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
... .-.++..++.+++.+.-. .-....-..++..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~--~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK--DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh--hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 777 678888888888876432 2223345678999999999999988888888888776
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCC--------Chh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005145 630 LEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTA--------NPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 700 (712)
Q Consensus 630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~--------~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~ 700 (712)
+-......++.....+..+...|.-..+....... -+. -...+..+-.+-.+.|++..+. ++.-.+|...
T Consensus 475 ~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~-~~~~~LL~~~ 553 (1185)
T PF08626_consen 475 LVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVL-RFSSLLLRTY 553 (1185)
T ss_pred hccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHH
Confidence 53322211233333444444444432221111000 111 1245566667777889999888 7777777665
Q ss_pred cc
Q 005145 701 SR 702 (712)
Q Consensus 701 p~ 702 (712)
..
T Consensus 554 ~~ 555 (1185)
T PF08626_consen 554 SP 555 (1185)
T ss_pred hh
Confidence 44
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=6.4 Score=35.24 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=94.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005145 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
|..|+..+.-.++-..|..+|++.. .++.++|+..|...-+.--. .. -..
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~lektg~g-----~Y--pvL 95 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLEKTGYG-----SY--PVL 95 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHHhcCCC-----cc--hHH
Confidence 4455666666666666666666533 34556666666554433111 12 245
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005145 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (712)
+....+.+....|+...|+.+|.++-...+. +....-.+...-+.++...|-|+.-.. ..+.+..+..+.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~m 165 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCChh
Confidence 6677888899999999999999876543211 111111223345666777787765443 333344445566
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 599 FGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
...+...||..-++.|++.+|..+|.+...
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 677888999999999999999999998765
No 332
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.99 E-value=0.22 Score=52.50 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (712)
.+...|.+|...| |...|+.++..|+.... .+....+.+||.+...-|-..+|-.++.+++.+. ..
T Consensus 609 ~ln~aglywr~~g-n~~~a~~cl~~a~~~~p--------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~s 674 (886)
T KOG4507|consen 609 ILNEAGLYWRAVG-NSTFAIACLQRALNLAP--------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SS 674 (886)
T ss_pred EeecccceeeecC-CcHHHHHHHHHHhccCh--------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----cc
Confidence 3444455555556 59999999999986432 2223456778999999999999999999999886 33
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
.|. .++.+|..|..+.+.+.|++.|++|++.
T Consensus 675 epl----~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPL----TFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred Cch----HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 343 3788999999999999999999999988
No 333
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.85 E-value=9.7 Score=36.85 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005145 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
+..+|.+....|+|++.+.+..+++.... .....-...++.+|- ..|....+...+..........+. .
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-------ELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---E 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---h
Confidence 56789999999999999999999988721 112222333333332 233344444444433333222211 1
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 005145 390 EEAADRRLMGLICETKGDH-EAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSL-----S-----RYDEAGF 453 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 453 (712)
. . ...+-...... ++-...+...+.++.. ..+....+..+-..|..|... | -.+.|..
T Consensus 74 ~----~--~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 K----Q--VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 0 0 00110001111 1112223333333221 111122222333345444321 1 2378999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Q 005145 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 506 (712)
.|++|+.++.....+.+|.......+.+..|+. .|+.++|+.+.++|+.....
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999997788899888888888877654 89999999998888876543
No 334
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.73 E-value=11 Score=37.14 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=78.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhCCCCCCcHHH
Q 005145 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAG 559 (712)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~ 559 (712)
+..+.+.|++..|.++..-.++.+.+.. ... .......++.++...+.-+ +-..+..+|++.. ...+.......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~-~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~ 91 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSE---DPV-DEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT-------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCC-CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHH
Confidence 3444555555555555555555554421 111 1222345555555544322 3455667777766 43344456667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 560 IEAQMGVMYYMLGNYSDSYDSFKNA-----------ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
.+..+|..|++.|++.+|..+|-.. +......+..... .......-.-|...++...|...+....+
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8889999999999999999887321 1111122222222 23333344567778999999998888877
Q ss_pred HHHH
Q 005145 629 ILEQ 632 (712)
Q Consensus 629 ~~~~ 632 (712)
.+..
T Consensus 170 ~~~~ 173 (260)
T PF04190_consen 170 KLIE 173 (260)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6433
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.60 E-value=5.2 Score=37.01 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005145 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (712)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (712)
..++.+-.-+.|+..|.++- .......+...+.+|..|. ..+.++|+.++.+++++.... +...+.++..
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~----~~~n~eil~s 183 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD----DNFNPEILKS 183 (203)
T ss_pred HHHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC----CCCCHHHHHH
Confidence 33445545567777776552 1222345677788887766 678999999999999985432 2445788999
Q ss_pred HHHHHHHcCCHHHHH
Q 005145 480 LADMYNRTGKLRESK 494 (712)
Q Consensus 480 la~~~~~~g~~~~A~ 494 (712)
|+.++..+|+++.|-
T Consensus 184 Las~~~~~~~~e~AY 198 (203)
T PF11207_consen 184 LASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHhcchhhhh
Confidence 999999999999874
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.47 E-value=0.3 Score=34.30 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
++++.+|..+.+.|+|.+|. +..+.+|+..|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~-~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKAR-RYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence 57889999999999999999 999999999996
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.44 E-value=27 Score=40.97 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=59.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHhHHHHHHHHhhchhhhhhc
Q 005145 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-------QYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~ 300 (712)
-.+++.... |++|+..|++...-+. ...+-..+.+.+|.....+- .+++|+.-|++...-
T Consensus 482 ~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 548 (932)
T PRK13184 482 PDAFLAEKL-YDQALIFYRRIRESFP------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------ 548 (932)
T ss_pred cHHHHhhHH-HHHHHHHHHHHhhcCC------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------
Confidence 334444443 6666666666554431 11233556777777776542 245555555443321
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
+.-|.. |...|.+|..+|+|++-+++|.-|++.+.+
T Consensus 549 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 549 VGAPLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred CCCchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 333333 888899999999999999999999988644
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.40 E-value=0.93 Score=31.87 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
..++.+|..+.+.|+|++|..+.+.++++ .|++..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHHHHH
Confidence 46788999999999999999999999999 88877765544433
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.35 E-value=1.3 Score=36.31 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005145 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
+|.-++..|++-+|+++.+..+..... .......+..-|.++..+ .+.+-=..++.-+++-+.+. ..-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a--~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA--VELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH--hccC
Confidence 466788999999999999998876322 222224555566666543 34433333444444433332 1114
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
|..+..++.+|.-+-..-.|+++..-.++++.
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44566666666655555555666555555554
No 340
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.24 E-value=22 Score=43.66 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----C--------------------
Q 005145 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----R-------------------- 447 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~-------------------- 447 (712)
++....+|.++...|++.+|+.+|..|+...+..+|....+.++-.++.+....+ +
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 4466789999999999999999999999999999888888777766654433211 0
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHHHHcC--
Q 005145 448 --------------------------------YDEAGFAYQKALTAFKTNK---GENHP--AVASVFVRLADMYNRTG-- 488 (712)
Q Consensus 448 --------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~~g-- 488 (712)
...-...+++++.++.+.. .+..| -...+...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 1111234455555555442 11122 24566777777777777
Q ss_pred ------------------CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.-.++..++.+++.+.... -...+....+..+|.+|...|-..++.-+++.++...-..
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~ 478 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG 478 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc
Confidence 6778888888888765432 2355678899999999999999988888888877766432
Q ss_pred CCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 551 PGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER--KSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (712)
Q Consensus 551 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 627 (712)
.... ..+...+..+...|--..+.+.-. .. ...+.. .+..-..++..+-.+....+++..+..+.-..+
T Consensus 479 l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~---~~-----~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL 550 (1185)
T PF08626_consen 479 LIHWHQSYRSLLEELCKGYGISLDPESSS---ED-----SSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLL 550 (1185)
T ss_pred cCCcchHHHHHHHHHhccCcccCCccccc---cc-----cccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2111 111122222222222211111000 00 000000 111222455555566777888888877776666
Q ss_pred HHHHHh
Q 005145 628 SILEQE 633 (712)
Q Consensus 628 ~~~~~~ 633 (712)
..+-..
T Consensus 551 ~~~~~~ 556 (1185)
T PF08626_consen 551 RTYSPL 556 (1185)
T ss_pred HHHhhh
Confidence 654433
No 341
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.20 E-value=2 Score=38.13 Aligned_cols=89 Identities=8% Similarity=-0.033 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
+......+..+..+-...++.+++...+.-.--+ .|.....-..-|.++...|+|.+|+.+|+....-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---- 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---- 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence 3345556666777777788888888877766555 7777888888888999999999999888886443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccH
Q 005145 508 VPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
.+....+--.++.|+..+|+.
T Consensus 74 -----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 -----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -----CCCChHHHHHHHHHHHHcCCh
Confidence 233445555677777777764
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.08 E-value=0.24 Score=29.87 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.++..+|.++...|++++|. ..|+.+++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence 46789999999999999999 999999988773
No 343
>PRK14707 hypothetical protein; Provisional
Probab=91.95 E-value=42 Score=42.13 Aligned_cols=379 Identities=8% Similarity=-0.006 Sum_probs=186.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005145 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
.++.++-.+++|.++..+-.-+..+......... ....-.-..++.++-.++++.+...+-.-++.+...+.. ++..
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~-LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~--d~~L 912 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPE-LRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD--EPEL 912 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChh-hhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc--CHHH
Confidence 4577777777777666665555555432221111 111111345677888888888877777777777766543 3333
Q ss_pred HHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005145 350 GET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 350 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
... -..++.++..+.+|.++-.+-.-+..+............+..-..++.++...++|.+.-.+-.-+..+.....+
T Consensus 913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~ 992 (2710)
T PRK14707 913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD 992 (2710)
T ss_pred HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence 333 355677777777777765555555555544433222222333445677777778877766655555444433333
Q ss_pred ChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 428 DAEVASV--DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA--SVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 428 ~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.+..-.. -..++.++..+.+|.++-.+-.-+..+...+.. .+... .--..++.++....+|.+.-.+-.-+..+
T Consensus 993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aL 1070 (2710)
T PRK14707 993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASAL 1070 (2710)
T ss_pred cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHH
Confidence 3322222 345667777777887666666666666655432 23222 22345666777777776655554444444
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
..... .+..-..+..-..++.++...-+|-+.-.+-+.++.+......... ........++.++-...+|.....+=.
T Consensus 1071 A~rL~-~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~ 1149 (2710)
T PRK14707 1071 AERLS-DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACES 1149 (2710)
T ss_pred HHHhh-ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHH
Confidence 43321 0000001122234555555555666655555555555554421111 000111234444444444444333333
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005145 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
-+..+...+.....-..+..-..++..+-...++.+.-.+-+-++.+........+|........|+.+...
T Consensus 1150 Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa 1221 (2710)
T PRK14707 1150 AIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANA 1221 (2710)
T ss_pred HHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHH
Confidence 333333332211111011111223333333344444445555555555555555666544444444444333
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.82 E-value=0.51 Score=30.45 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005145 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
.++..||.+-...++|++|+.-|++++.+.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877643
No 345
>PRK14707 hypothetical protein; Provisional
Probab=91.75 E-value=44 Score=41.97 Aligned_cols=300 Identities=9% Similarity=0.034 Sum_probs=161.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005145 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
..++.++-.+.++..+..+-..+..+...+.. ++..... -..++.++..+++|.+...+-.-++.+..........
T Consensus 835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~L 912 (2710)
T PRK14707 835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPEL 912 (2710)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHH
Confidence 45777788888888777777777666655422 2333222 2446677777778877766666666666555433223
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005145 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV--DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
..+..-..++.++....+|.++-.+-.-+..+.......+..... -..++.++..+++|.+...+-.-+..+...+..
T Consensus 913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~ 992 (2710)
T PRK14707 913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD 992 (2710)
T ss_pred HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence 333334556777777777776555444444444444444444333 245667777788887776666666666554421
Q ss_pred CCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 468 ENHPAV--ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 468 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.+.. ...-..++.++....+|.++-.+-.-+..+...+. .+..-....--..++.++-...+|.+.-.+-.-+..
T Consensus 993 --~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707 993 --EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred --cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence 2221 22233566677777777665555555555554421 110001112223556666666666554444444444
Q ss_pred HHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCH
Q 005145 546 IYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (712)
Q Consensus 546 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 616 (712)
+......... ..+..-..++.++...-+|.+.-.+-+-++.+...++.........-...++.+.-...++
T Consensus 1070 LA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707 1070 LAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred HHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence 4333211111 0111123566677777778877777777888877776544333223333344444433333
No 346
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.65 E-value=4.8 Score=35.76 Aligned_cols=86 Identities=17% Similarity=0.061 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
.+...+..+..+-...++.+++..++.-..-+ .|.....-..-|.++...|++.+|+.+|+....-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 34455666777777888888888777644332 2334466777899999999999999999997654
Q ss_pred CCChhhHHHHHHHHHHHHHccc
Q 005145 636 PYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 636 ~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.|....+..-+|.|+..+|+
T Consensus 74 --~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGD 93 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCC
Confidence 77777788889999999998
No 347
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.34 E-value=6.3 Score=35.49 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc-
Q 005145 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL- 445 (712)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~- 445 (712)
-|+.|..++..+-+.... +...+.+|..+. ..+++..|++.+..+-. .....+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence 455555555554433221 223444554443 45678889999987752 33455666777776642
Q ss_pred ----CC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------------------------HcCCHHHHHH
Q 005145 446 ----SR--YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN------------------------RTGKLRESKS 495 (712)
Q Consensus 446 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~ 495 (712)
++ ..+|++++.++-++ ....+.+.|...|. ...+.+.|.+
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 23 67888888888665 11233344444333 3345666766
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhC
Q 005145 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 550 (712)
+..+|-++ .++.+..++.+.|.. -.+.++|..+-.+|.++....
T Consensus 190 fa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 190 FAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 66666655 235566777777654 236788888888888887654
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.07 E-value=0.4 Score=28.77 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.++..+|.++...|++++|..+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999876
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.90 E-value=4.9 Score=42.86 Aligned_cols=160 Identities=14% Similarity=0.009 Sum_probs=86.7
Q ss_pred HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005145 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (712)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (712)
.....++++++..+....- +. +.-|. .....++..+...|..+.|+.+... | ...
T Consensus 270 ~av~~~d~~~v~~~i~~~~-ll-----~~i~~---~~~~~i~~fL~~~G~~e~AL~~~~D-------------~---~~r 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN-LL-----PNIPK---DQGQSIARFLEKKGYPELALQFVTD-------------P---DHR 324 (443)
T ss_dssp HHHHTT-HHH-----HHHH-TG-----GG--H---HHHHHHHHHHHHTT-HHHHHHHSS--------------H---HHH
T ss_pred HHHHcCChhhhhhhhhhhh-hc-----ccCCh---hHHHHHHHHHHHCCCHHHHHhhcCC-------------h---HHH
Confidence 3445788888777775211 11 11111 1256778888888888877765433 2 223
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (712)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (712)
+.| ..+.|+++.|.+...+.- . ...|..||.....+|+++-|.++|+++-
T Consensus 325 FeL---Al~lg~L~~A~~~a~~~~-------~------~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------------- 374 (443)
T PF04053_consen 325 FEL---ALQLGNLDIALEIAKELD-------D------PEKWKQLGDEALRQGNIELAEECYQKAK-------------- 374 (443)
T ss_dssp HHH---HHHCT-HHHHHHHCCCCS-------T------HHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------
T ss_pred hHH---HHhcCCHHHHHHHHHhcC-------c------HHHHHHHHHHHHHcCCHHHHHHHHHhhc--------------
Confidence 333 457788888776654321 1 2268899999999999999999998762
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
-+..+..+|...|+.+.-.++...|... + . ++..-.+++..|+.++.++++.++-
T Consensus 375 d~~~L~lLy~~~g~~~~L~kl~~~a~~~----~---~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 375 DFSGLLLLYSSTGDREKLSKLAKIAEER----G---D------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHHHT----T----------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred CccccHHHHHHhCCHHHHHHHHHHHHHc----c---C------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1345566777888875544444433322 1 1 1112234455677777776666543
No 350
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.78 E-value=4.6 Score=36.37 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-
Q 005145 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLS-----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT- 487 (712)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 487 (712)
.|+.|..++..+-+....+...+.+|..++. .++...|++.+..+-+. ..+.+...+|.+++.-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 3444444555555555666667777766553 45788888888887664 2345666777776642
Q ss_pred ----C--CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH------------------------HcccHHHHH
Q 005145 488 ----G--KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------------------------SMNELEQAI 537 (712)
Q Consensus 488 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~ 537 (712)
+ +..+|+.++.++-.+- ...+.+.|...|. -..+.+.|.
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 2 3678888888876651 1223333333333 334566777
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 005145 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
++.-+|.++.. ..+..++.+.|..- .+.++|..+-.+|.++.+++...
T Consensus 189 qfa~kACel~~---------~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~ 240 (248)
T KOG4014|consen 189 QFAIKACELDI---------PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN 240 (248)
T ss_pred HHHHHHHhcCC---------hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 66666655421 23555667766442 46788999999999987766433
No 351
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.72 E-value=4.6 Score=41.19 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=79.0
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
+.+......-.++..+|..|...|+++.|++.|-++-..+.. ....+..+.++-.+-...|+|..-..+..+|..
T Consensus 141 K~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 141 KDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred hcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 333334455677889999999999999999999998877654 456678888888888999999888888887776
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005145 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (712)
..... ........+.+...-|.+.+.+++|..|.++|-.+.
T Consensus 216 t~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 216 TPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred Cchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 52000 000000112234444555566668988888876553
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.76 E-value=4.8 Score=41.91 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
++..|.+++.-+|+|..|++.++.. ++.....-...+...+.+++.+|-+|..+++|.+|++.|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999998753 333222223334456677999999999999999999999998876544
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.48 E-value=2.1 Score=39.51 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=59.5
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005145 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (712)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (712)
-+.|+ +.|...|.++- +.+..+.+...+.||..|. ..+.++|+.++.+++++... .......++
T Consensus 118 sr~~d--~~A~~~fL~~E--------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~-----~~~~n~eil 181 (203)
T PF11207_consen 118 SRFGD--QEALRRFLQLE--------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP-----DDNFNPEIL 181 (203)
T ss_pred hccCc--HHHHHHHHHHc--------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC-----CCCCCHHHH
Confidence 33454 66666655443 4555666788888888776 78899999999999999743 112234569
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 005145 312 MQLGDTYAMLGQLENSLM 329 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~ 329 (712)
..|+.+|..+|+++.|--
T Consensus 182 ~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 182 KSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHhcchhhhhh
Confidence 999999999999998853
No 354
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=31 Score=37.22 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=101.8
Q ss_pred cCCHhHHHHHHHHhhchhhhh----hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--------
Q 005145 278 LGQYNEAIPVLEQSIEIPVIE----EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-------- 345 (712)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 345 (712)
...|++|...|.-+....... .-..+| ..+..+..++.++..+|+.+.|....++++-.+...+.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssP-YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSP-YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCC-cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345777877777766543210 001222 2456799999999999999999999999998877654321
Q ss_pred -----Chh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 346 -----DPR---VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 346 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
.|. ...+++..-..+...|-+..|.+++.-.+.+.+...... +.+.+-.......+|.=-++.++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG------ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 122 223344444556678999999999999888876532211 222222333334444433443333
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 005145 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTA 461 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 461 (712)
. +........|..... ..+|..|..... -..|...+.+|+.+
T Consensus 404 ~-e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 404 P-ENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred H-HhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2 111111222332221 244555655554 56788888898887
No 355
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.89 E-value=26 Score=34.74 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
..+.+...||.+|...++|..|-..+.-. .. ..|. .......+..+|.+|...++..+|..+..++--+...
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-Cc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 46677889999999999999987766422 11 1111 1234456789999999999999999999988554433
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005145 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (712)
Q Consensus 591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 627 (712)
. .++......-...|+++-..++|-+|...|-+..
T Consensus 177 ~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 177 S--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred c--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222222333344566667777777776665543
No 356
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=29 Score=34.79 Aligned_cols=95 Identities=9% Similarity=0.121 Sum_probs=70.0
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 005145 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (712)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (712)
+....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..........+ .+-..++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHH
Confidence 3445668999999999999887765 444566677888999999999999999999999888877766643 23345666
Q ss_pred HH-HHHHHhCCHHHHHHH
Q 005145 606 MG-LACVQRYSINEAVEL 622 (712)
Q Consensus 606 lg-~~~~~~g~~~~A~~~ 622 (712)
++ ..|...|++..+...
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 66 445556777654433
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.49 E-value=4.5 Score=32.28 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHH
Q 005145 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT--LGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLA 676 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~--~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la 676 (712)
...+.+.+|..+...|++++|++.+-..+.. +++. -.+...+-.++. .++..+|.+......|+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~--------dr~~~~~~ar~~ll~~f~------~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR--------DRDYEDDAARKRLLDIFE------LLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTCCCCHHHHHHHHHHH------HH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccccccHHHHHHHHHHH------HcCCCChHHHHHHHHHH
Confidence 4478999999999999999999988887765 3322 234444444443 44578888888888887
Q ss_pred HHHH
Q 005145 677 ELLK 680 (712)
Q Consensus 677 ~~~~ 680 (712)
.+++
T Consensus 87 ~lL~ 90 (90)
T PF14561_consen 87 SLLF 90 (90)
T ss_dssp HHH-
T ss_pred HHhC
Confidence 7653
No 358
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.35 E-value=15 Score=37.87 Aligned_cols=108 Identities=11% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-----H-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-----P-----AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
|..++++++|..|..-|..+|+++.+...... . -...+...|..||.++++.+-|+....+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 44556677777777777777777654321111 1 12234557889999999999999999999887
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005145 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (712)
+|....-+...|.++..+.+|.+|..-+--+.-++.-..|...
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q 300 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ 300 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 5556677888899999999999998888777766665533433
No 359
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.17 E-value=10 Score=31.70 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
+..+|...+..+++-.++-+|++|+.+..+....+. .-.+....+||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 445677778888888888888888888777632111 1234567899999999999999999998877665544
Q ss_pred C
Q 005145 508 V 508 (712)
Q Consensus 508 ~ 508 (712)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 360
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=87.96 E-value=13 Score=39.86 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 426 DQDAEVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+.-.....++.+||.+-.. ...-..++.+|.+|+...+..++ ......|..+|..|++.++|.+|+.++-+|-..
T Consensus 271 ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 271 GHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp TTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666665543 33456789999999999999874 334678889999999999999999999999888
Q ss_pred HhcC
Q 005145 504 YEKP 507 (712)
Q Consensus 504 ~~~~ 507 (712)
.+..
T Consensus 348 i~~Y 351 (618)
T PF05053_consen 348 IRKY 351 (618)
T ss_dssp HTTS
T ss_pred HHHc
Confidence 7664
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.93 E-value=0.75 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHH
Q 005145 266 MCLHVIAAIYCSLGQYNEAIPVLEQ 290 (712)
Q Consensus 266 ~~l~~la~~~~~~g~~~~A~~~~~~ 290 (712)
.++..+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567799999999999999998863
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.92 E-value=6.6 Score=33.54 Aligned_cols=84 Identities=5% Similarity=-0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 559 GIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
...+++++++.+..+.+ +.+.+++..+. ..++...-..++.|+..+.+.++|++++.+....++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~------ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET------ 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh------
Confidence 56778899988876544 44444444443 1223333467888999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcc
Q 005145 636 PYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 636 ~~~p~~~~~~~~La~~~~~~g 656 (712)
.|++.++..---.+..++.
T Consensus 101 --e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 101 --EPNNRQALELKETIEDKIT 119 (149)
T ss_pred --CCCcHHHHHHHHHHHHHHh
Confidence 7777666554444444443
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.83 E-value=9 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 005145 352 TCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
.|..||.....+|+++-|.++|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4555555555555555555555554
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.75 E-value=10 Score=38.87 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.+...+..||..+++.+-|+.+..+.+.+ +|....-+...|.++..+.+|.+|-.-+--+.-++--
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988 8888888999999999999999998877766666543
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.69 E-value=45 Score=36.05 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------
Q 005145 406 GDHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN---------- 469 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 469 (712)
..|++|...|.-+......+ ...|.....+..++.++..+|+.+-|....+++|-.+.....+.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 34556666666555443322 24577788899999999999999999999999988776654221
Q ss_pred ---CHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005145 470 ---HPA---VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 470 ---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
++. ...+++..-..+...|-+..|.+++.-.+.+-.. .+|. .+.+.+-...++..+|+=-+..++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-----eDPl--~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-----EDPL--GILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----CCch--hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 2333444445567789999999999988887321 1221 12222323333444555444444443
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 005145 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISKLR 589 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 589 (712)
-.. ... ...+... .-..+|..|..... -+.|...+.+|+.+..
T Consensus 405 e~~-n~l-~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 405 ENM-NKL-SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred Hhh-ccH-hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 211 111 1111111 12346666666655 5678888888887643
No 366
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.68 E-value=11 Score=32.42 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005145 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
+.-..-..++++++..+...-.-.+++....+|...+.... .+.++|...... +.....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 55666678899999988663222344555566655554322 677777755443 3344556788899999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 005145 568 YYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 568 ~~~~g~~~~A~~~~~~al 585 (712)
+...|++++|...|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998875
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.29 E-value=0.79 Score=26.67 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
.+...+|.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4677899999999999999998763
No 368
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=51 Score=36.07 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005145 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (712)
..+.+-|.-.++..+|..++++|...+..... +............++.||..+.+.+.|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~---D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS---DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 34556688888999999999999999876532 2222233556889999999999999999999999887
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+|...-....+-.+....|.-++|+.++.........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 5666666666777777889999999999888776544
No 369
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.08 E-value=42 Score=35.06 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=51.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005145 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (712)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ 289 (712)
+.+...++|.+...++.+...+-.++. +++-.+.|++...- .+-...++.++.-|.+. ..+|.....+|-
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~p-------fp~~~~aw~ly~s~ELA--~~df~svE~lf~ 100 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSP-------FPIMEHAWRLYMSGELA--RKDFRSVESLFG 100 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCC-------CccccHHHHHHhcchhh--hhhHHHHHHHHH
Confidence 345667899999999999999988886 88888888876542 22223344444434433 467777788888
Q ss_pred Hhhch
Q 005145 290 QSIEI 294 (712)
Q Consensus 290 ~al~~ 294 (712)
+++.-
T Consensus 101 rCL~k 105 (660)
T COG5107 101 RCLKK 105 (660)
T ss_pred HHHhh
Confidence 77754
No 370
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=47 Score=38.96 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH------Hccc----HHHHHHHHHHH
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQKA 543 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a 543 (712)
....+.+|.+|...|+..+|+.+|.+|..-..+ ..++..+..-.. ..|+ -..|..||.++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge----------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE----------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcccc----------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence 455677889999999999999999999875422 112222211110 1222 12345566666
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005145 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
+++.+.. +-.+.+.++.-+|++. .++. .+..+.....+=.-...+|.+-+|....
T Consensus 990 ~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd-~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 990 VRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDD-NPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCc-chhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 5554433 3334444444444432 2332 2334455555555566666666655433
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccch--------------------hhhCCCCh-hHHHHHHHHHHHHHHh
Q 005145 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRE--------------------EKLGTANP-DVDDEKRRLAELLKEA 682 (712)
Q Consensus 624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~--------------------~~l~~~~p-~~~~~~~~la~~~~~~ 682 (712)
-+- ++......++..|-.++...|.. +..+...| .....|..|-..+...
T Consensus 1045 ~~n---------pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1045 LRN---------PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred HcC---------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence 221 11122334666666666666661 11111111 1222344444555678
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q 005145 683 GRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 683 g~~~~A~~~~l~~~l~~~p~ 702 (712)
+++++|..-.|+.+.....+
T Consensus 1116 hN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred cchhHHHHHHHHHHHHhccc
Confidence 88888886677776665554
No 371
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.93 E-value=8.7 Score=39.53 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CCChhHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhCC
Q 005145 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--VPPEEIASGLTDVSSIYESMNEL---EQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~ 551 (712)
++..|........|++|+.++-.|-+.+....+. .....++..-..+.+||+.+.+. ..|..-+..+-+-+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 3444555555566666666555554443321000 00111333444566777766542 345444444444333333
Q ss_pred CCC------------C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH------H--
Q 005145 552 GQQ------------S---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG------L-- 608 (712)
Q Consensus 552 ~~~------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg------~-- 608 (712)
|.+ + .+...+..-|.+.+++|+-++|.++++.|...+.++.-.+... ..+..+| .
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l--sllv~mGfeesdaRla 323 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL--SLLVGMGFEESDARLA 323 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH--HHHHHcCCCchHHHHH
Confidence 321 2 2344556779999999999999999999998887765443321 2233332 1
Q ss_pred HHHHhCCHHHHHHHHHH
Q 005145 609 ACVQRYSINEAVELFEE 625 (712)
Q Consensus 609 ~~~~~g~~~~A~~~~~~ 625 (712)
+-.-.|+.+.|.++..+
T Consensus 324 LRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 324 LRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHhccccHHHHHHHHHH
Confidence 11124678888777643
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.40 E-value=40 Score=35.34 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
......+.-++..++|..|...+....... .+... .........|..++...++.+|.++++..+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRL---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344556677788999999999999987641 11111 1122233345666789999999999998764
No 373
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.23 E-value=38 Score=33.68 Aligned_cols=111 Identities=10% Similarity=-0.013 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005145 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
..+.+...||.+|-..++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-......+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45677889999999999999887766422 11110111122233557788999999999999999999988654444434
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (712)
+......-...|+++-..++|-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556777777888877776666543
No 374
>PRK10941 hypothetical protein; Provisional
Probab=86.21 E-value=7.5 Score=38.32 Aligned_cols=70 Identities=9% Similarity=-0.048 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.-....+.++-.+|...++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|..-++..++.+..
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 345677888899999999999999999999998 7777788888999999999999999999999998644
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.21 E-value=42 Score=35.19 Aligned_cols=65 Identities=12% Similarity=-0.092 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
....+..++..++|..|...|....... +.............|..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl-----~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRL-----PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445667788999999999999887631 1111112222344455667788899999999987765
No 376
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.87 E-value=7.4 Score=34.02 Aligned_cols=86 Identities=8% Similarity=-0.071 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
....+..+...-...++.+++..++...--+ .|.....-..-|.++...|+|.+|+.+|+...+-.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA------ 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC------
Confidence 3444455555555688888888777665555 67777777888889999999999988888765541
Q ss_pred CCChhHHHHHHHHHHHHHHcccH
Q 005145 511 VPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
+..+...-.++.|+..+|+.
T Consensus 75 ---~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 75 ---GAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred ---CCchHHHHHHHHHHHhcCCh
Confidence 12234445567777777664
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.81 E-value=2.7 Score=35.80 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHccc----------hhhhC-CCChh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 641 TLGVYSNLAGTYDAIGR----------EEKLG-TANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 641 ~~~~~~~La~~~~~~g~----------~~~l~-~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
...+.+++|+++....+ .+.+. ..+|+ ..++++.|+.-+++.|+|+.++ ++++.+|+..|+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCCC
Confidence 45677888888877666 33333 35554 4578899999999999999999 999999999986
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.80 E-value=12 Score=36.78 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.+.++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|.+.-.......+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 4456888999999999999999999999988 7888889999999999999999999999998886544433
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=69 Score=36.33 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005145 244 LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (712)
Q Consensus 244 ~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (712)
+|.-|+.+.+.. ..+......++...|..++..|++++|...|-+.+...
T Consensus 349 ly~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 355566666554 33345567788888999999999999999999888663
No 380
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.69 E-value=83 Score=37.14 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=72.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
...++.....|+.|+..|++...-.+ |... -.++.+.+|.+...+-.-..--..|.+|+..+....+ .+...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 35666677889999999988766542 1111 2345777887776654333333566666666655432 24445
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.-|..-|.+|..+|++++-++++.-|++.+++...
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 56777788999999999999999999998877654
No 381
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.27 E-value=1.8 Score=42.08 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+.|.-....|+.++|..+|+.|+.+ .|....++..+|.+....++.-+|-.+|-+|+.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3445566789999999999999999 8888899999999999999999999999999988
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.27 E-value=8.4 Score=30.71 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005145 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...... ....+...+-.++...|
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-------~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-------EDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-------CCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------cccHHHHHHHHHHHHcC
Confidence 4455666665 88889999999999999999999999888877664331 01223344555555556
Q ss_pred cHHHHHHHHH
Q 005145 532 ELEQAIKLLQ 541 (712)
Q Consensus 532 ~~~~A~~~~~ 541 (712)
.-+.-..-|+
T Consensus 73 ~~~plv~~~R 82 (90)
T PF14561_consen 73 PGDPLVSEYR 82 (90)
T ss_dssp TT-HHHHHHH
T ss_pred CCChHHHHHH
Confidence 5443333333
No 383
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.16 E-value=89 Score=37.03 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 480 LADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
-|.+|...|+.++|+..|..+ +.+..+.. .........-..|+.-+..++++-+|-+.+...+.
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~--~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLS--EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 355666677777777766443 33433321 11122232335566666677777777666655543
No 384
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.02 E-value=2 Score=41.82 Aligned_cols=72 Identities=21% Similarity=0.119 Sum_probs=58.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005145 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (712)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 643 (712)
.+.-..+.|+.++|..+|+.|+.+. +....++..+|......++.-+|-.+|-+|+.+ .|....
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 3344557899999999999999872 233478999999999999999999999999998 887777
Q ss_pred HHHHHHHH
Q 005145 644 VYSNLAGT 651 (712)
Q Consensus 644 ~~~~La~~ 651 (712)
++.+.+.+
T Consensus 186 ALvnR~RT 193 (472)
T KOG3824|consen 186 ALVNRART 193 (472)
T ss_pred HHhhhhcc
Confidence 77776543
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.94 E-value=18 Score=35.40 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005145 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 639 (712)
.+...+..|...|.+.+|+.+.++++.+ ++.....+..|-.++...|+--.|...|++..+.++..+|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 4556678899999999999999999886 34555778888899999999999999999999988888886544
Q ss_pred hhHH
Q 005145 640 DTLG 643 (712)
Q Consensus 640 ~~~~ 643 (712)
+...
T Consensus 353 dsie 356 (361)
T COG3947 353 DSIE 356 (361)
T ss_pred hhHH
Confidence 4433
No 386
>PRK10941 hypothetical protein; Provisional
Probab=84.69 E-value=6.7 Score=38.65 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 338 (712)
....+.++-.+|...++++.|+.+.+..+.+. |+++.. +...|.+|.++|.+..|..-++..++.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp~e----~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDPYE----IRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCHHH----HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45567788889999999999999999999987 777654 7889999999999999999999988884
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=84.44 E-value=46 Score=33.16 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005145 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (712)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (712)
.+-+..++.. ++.+-|.....|+++. ++.+.+|..|+.-- .--..+|..+|+++++..
T Consensus 189 eIMQ~AWRER-np~~RI~~A~~ALeIN---------~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 189 EIMQKAWRER-NPPARIKAAYQALEIN---------NECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHhc-CcHHHHHHHHHHHhcC---------chhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 3334444443 4888888888898875 55566776665432 234667888888887654
No 388
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.10 E-value=82 Score=35.78 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=41.2
Q ss_pred cccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 005145 196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF 252 (712)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~ 252 (712)
.+..+..|..|+........+....+..+...|..++..|+ +++|...|-+.+...
T Consensus 343 iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGFL 398 (933)
T ss_pred HHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHcccC
Confidence 44555557777744444444445677888999999999997 999999999988654
No 389
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.86 E-value=14 Score=32.35 Aligned_cols=88 Identities=8% Similarity=-0.058 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005145 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
.....+..+...-...++.+++..++...--+.|+... .-..-|.++...|+|.+|+..|+... +.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e--------~d~~dg~l~i~rg~w~eA~rvlr~l~------~~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE--------LDMFDGWLLIARGNYDEAARILRELL------SS 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc--------cchhHHHHHHHcCCHHHHHHHHHhhh------cc
Confidence 34455556666666688999998888776666665543 34567889999999999999998765 33
Q ss_pred ChhHHHHHHHHHHHHHHcCCHH
Q 005145 428 DAEVASVDCSIGDTYLSLSRYD 449 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~ 449 (712)
.+......-.++.|+..+||.+
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCCchHHHHHHHHHHHhcCChH
Confidence 3344445555677777777753
No 390
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=83.78 E-value=44 Score=32.39 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005145 353 CRYLAEAHVQALQFSEAQKFCQMALDIH-KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
+..+|.+..+.++|++...+..+++... +.... . .-.+.|..+|- ..|....+...+...-..-...+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt---~---EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT---V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC---H---HHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 4467788888999999999999987752 11111 1 12334444443 345556666555432111011111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHc-----CC-----HHHHHHHH
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN---HPAVASVFVRLADMYNRT-----GK-----LRESKSYC 497 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 497 (712)
...+ .-|. ..=-++-..+....+.+.....-+. ....+..+-..|..|... |+ .+.|...|
T Consensus 78 ~~~~-----~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 VASI-----KEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred HHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1111 1111 1112344556667777766554332 122333344445555432 22 45889999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHH
Q 005145 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 547 (712)
+.|+++....+ ...+|.......+.+..| .-+++.++|..+.++|+.-.
T Consensus 152 ~~A~e~a~~~L-~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAEL-PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987755 334444444445555554 45799999998888777654
No 391
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.63 E-value=84 Score=35.49 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 005145 315 GDTYAMLGQLENSLMCYTT 333 (712)
Q Consensus 315 g~~~~~~g~~~~A~~~~~~ 333 (712)
-.++...|+|+.|+.++-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 3556667778888777766
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=52 Score=33.07 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (712)
+....++.++|++++++.+......+.+.........+|.++...|+..++.+.+...-.......+- .+.....++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHH
Confidence 34456799999999999998887777777788888899999999999999999999888877666543 33344555666
Q ss_pred HHHH-HHcCCHHHHHHHHHH
Q 005145 481 ADMY-NRTGKLRESKSYCEN 499 (712)
Q Consensus 481 a~~~-~~~g~~~~A~~~~~~ 499 (712)
+.-| ...|++...-...-+
T Consensus 163 ssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 5544 456777764443333
No 393
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.13 E-value=23 Score=35.02 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
....++..++..+...|+++.+...+++.+.. +|..-..|..+-..|...|+...|+..|++.-.....
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e 219 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE 219 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence 34577888999999999999999999999998 8888899999999999999999999999998886444
No 394
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.67 E-value=11 Score=28.73 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL 264 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 264 (712)
.+..+...|..+-..|+ +.+|+.+|+++++++.+.....++...
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 45677888888888987 999999999999999887665555433
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.69 E-value=1.9 Score=28.92 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005145 672 KRRLAELLKEAGRVRSRKAQSLETLLDA 699 (712)
Q Consensus 672 ~~~la~~~~~~g~~~~A~~~~l~~~l~~ 699 (712)
.+.||.+|..+|+.+.|+ ..+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAR-ELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHH-HHHHHHHHc
Confidence 467999999999999999 999999953
No 396
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.52 E-value=60 Score=32.38 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
+...+..+..+-++....|+++ ++..+.+|..|+.-- .--..+|..++++|++..
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 3444555666667777778887 777777777776532 223567778888887764
No 397
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.40 E-value=31 Score=28.98 Aligned_cols=75 Identities=8% Similarity=-0.008 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005145 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-------FFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (712)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (712)
+..+|...++.+++-.++-.|++|+.+..++...... ......-+||..+..+|+.+=.+.|++-|-+..-.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999998887422211 122356789999999999999999999988876655
Q ss_pred cC
Q 005145 634 CG 635 (712)
Q Consensus 634 ~~ 635 (712)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 398
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.25 E-value=65 Score=33.54 Aligned_cols=115 Identities=16% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCC---HhHHHHHHHHhhchh
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN----GKPSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEIP 295 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~----~~~~~~~~~~l~~la~~~~~~g~---~~~A~~~~~~al~~~ 295 (712)
.+...|+.++.... |.+|+.++-.|-+.|-.+.. .- .+++..-..+-+||+.+.+ .++|..-+..+-+-+
T Consensus 165 g~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~V--DNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 165 GLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELV--DNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhh--cchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 34566777888864 99999988888777654321 11 1123333345667776654 345554444443333
Q ss_pred hhhh-----------cccchHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 296 VIEE-----------GQEHALA--KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 296 ~~~~-----------~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
...+ |+..|.. .+..+..-|.+.+++|+-++|..+++.+......
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 2222 2233321 2233455577777777777777777777665544
No 399
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.71 E-value=76 Score=33.04 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=77.5
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005145 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (712)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 287 (712)
+.+.+..+..|.....++ .|.+-+ .. .+.|.++|+++-..- +.-..+... ..+|..-+..| ..+
T Consensus 197 dL~~E~~PKT~et~s~mI-~Gl~K~--~~-~ERA~~L~kE~~~~k-----~kv~~~aFN--~lI~~~S~~~~-----K~L 260 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMI-AGLCKF--SS-LERARELYKEHRAAK-----GKVYREAFN--GLIGASSYSVG-----KKL 260 (625)
T ss_pred HHHHhhcCCCchhHHHHH-HHHHHH--Hh-HHHHHHHHHHHHHhh-----heeeHHhhh--hhhhHHHhhcc-----HHH
Confidence 355555555555544432 333333 23 788888888775433 111111111 12344444444 344
Q ss_pred HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH-
Q 005145 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF- 366 (712)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 366 (712)
..+.+..... | .+..++.+-.|...-|+|+.|...+.+++.-.+++. - .|.....++.+ ..+.+-++.
T Consensus 261 v~EMisqkm~---P-----nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-V-ePsLsSyh~ii-k~f~re~dp~ 329 (625)
T KOG4422|consen 261 VAEMISQKMT---P-----NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-V-EPSLSSYHLII-KNFKRESDPQ 329 (625)
T ss_pred HHHHHHhhcC---C-----chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-C-CcchhhHHHHH-HHhcccCCch
Confidence 4444433210 1 334578888899999999999999999998877752 2 35554444433 344444443
Q ss_pred HHHHHHHHHHH
Q 005145 367 SEAQKFCQMAL 377 (712)
Q Consensus 367 ~~A~~~~~~al 377 (712)
.-|..++...+
T Consensus 330 k~as~~i~dI~ 340 (625)
T KOG4422|consen 330 KVASSWINDIQ 340 (625)
T ss_pred hhhHHHHHHHH
Confidence 44555555544
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.64 E-value=36 Score=29.19 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 005145 446 SRYDEAGFAYQKALTAFKTN-KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (712)
+.-..-..++++++..+... .-.+++....+|...+.... .+.++|.......- | ...+..|...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~I----G---~~~A~fY~~wA 106 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGI----G---TKLALFYEEWA 106 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTT----S---TTBHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCc----c---HHHHHHHHHHH
Confidence 55566677888888877542 12246666777776665433 77777776665411 1 23477789999
Q ss_pred HHHHHcccHHHHHHHHHHHH
Q 005145 525 SIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al 544 (712)
..+...|++++|.++|+.++
T Consensus 107 ~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhC
Confidence 99999999999999998875
No 401
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.06 E-value=16 Score=39.47 Aligned_cols=106 Identities=25% Similarity=0.150 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (712)
...++..+..+|-.++|++. ..+. . ..=.+..+.|+++.|.++..++-.
T Consensus 617 rt~va~Fle~~g~~e~AL~~-------s~D~----d-------~rFelal~lgrl~iA~~la~e~~s------------- 665 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL-------STDP----D-------QRFELALKLGRLDIAFDLAVEANS------------- 665 (794)
T ss_pred hhhHHhHhhhccchHhhhhc-------CCCh----h-------hhhhhhhhcCcHHHHHHHHHhhcc-------------
Confidence 45666777777766655443 2221 1 112345577888888777666532
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
..-|..||.+....+++..|.++|.+|..+-.-++-......+..+..||..-.+.|
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 146778899999999999999999888775322222122233334444554444444
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.63 E-value=3.8 Score=42.61 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
++..|.+++.-+|+|..|++.++..---.+.++..-.+-...+++.+|.+|+.+++|.+|++.|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999987753221112222333455678899999999999999999999998865543
No 403
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.61 E-value=14 Score=35.18 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005145 526 IYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (712)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (712)
-.+..|+++.|+.+..-|++.....++... .++.-....+......|..-+.. ++.....+ ....+......+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l-~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDL-TTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHH-HhcCCCChHHHH
Confidence 356789999999999999988665543322 23333344455555666533221 23333333 333344445567
Q ss_pred HHHHHHHHHHH---------HhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACV---------QRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~ 629 (712)
..+..+|..+. ..++...|+.++++|+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 77888888774 456888999999999998
No 404
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.47 E-value=84 Score=31.66 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---------------------
Q 005145 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ--------------------- 553 (712)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 553 (712)
..|+++.+..++. ......-..-|.+++..++|.+....+..+-...+...+.
T Consensus 42 ~~y~Q~~q~~kk~------~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~ 115 (449)
T COG3014 42 KAYEQSKQFTKKK------KNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVR 115 (449)
T ss_pred hHHHHHHHhhhhh------hHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchh
Confidence 3455555554431 1122233455788888888888877777665544432110
Q ss_pred -----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 554 -----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 554 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
......+...+|.-|....+++.|+--|.++... -+.|.++|.++++
T Consensus 116 ~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r----------------------------Q~~AKe~~~~ei~ 167 (449)
T COG3014 116 AYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER----------------------------QRRAKEFYYEEVQ 167 (449)
T ss_pred hcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 0112223344555566666666666666655442 2455555555555
Q ss_pred HHHHhcCC--CChhhHHH-----------HHHHHHHHHHccchhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005145 629 ILEQECGP--YHPDTLGV-----------YSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 695 (712)
Q Consensus 629 ~~~~~~~~--~~p~~~~~-----------~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~ 695 (712)
-.++.+.. .+|+.-.. |.+++..|..-. +-..+-+-+.-+.++.-.|++.++. ..+.+
T Consensus 168 ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~--------~l~npYv~Yl~~lf~a~n~dv~kg~-~~~~e 238 (449)
T COG3014 168 KAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQ--------GLLNPYVSYLSGLFYALNGDVNKGL-GYLNE 238 (449)
T ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccchHHHHHHHHHhcccCccHhHHH-HHHHH
Confidence 44443321 23332222 222222222111 1122333344556666677888887 77777
Q ss_pred HHHhccc
Q 005145 696 LLDANSR 702 (712)
Q Consensus 696 ~l~~~p~ 702 (712)
.+-..|+
T Consensus 239 ~~gi~qd 245 (449)
T COG3014 239 AYGISQD 245 (449)
T ss_pred HhccCch
Confidence 7666665
No 405
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.26 E-value=19 Score=38.83 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=39.7
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 338 (712)
.+..+.|+++.|..+..++-... -|..||.+....|++..|.++|.++..+.
T Consensus 645 elal~lgrl~iA~~la~e~~s~~--------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANSEV--------------KWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcchH--------------HHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 44566788888887776653321 28899999999999999999999987653
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.89 E-value=1.4e+02 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.0
Q ss_pred HHHHHHcCCHhHHHHHHHH
Q 005145 272 AAIYCSLGQYNEAIPVLEQ 290 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~ 290 (712)
-.++.-.|+|+.|+.++-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 4567778999999999987
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.11 E-value=4.1 Score=38.19 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=51.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
......++.+.|.+.|.+++++ .|.....|+.+|....+.|+++.|...|++.+++-
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456789999999999999998 88889999999999999999999999999999883
No 408
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.92 E-value=10 Score=38.21 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005145 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (712)
.+.-+...|+-.+.++++++|...|..|..+...++|..+.....+++..|..++..+++....-.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344578899999999999999999999999999999999999999999999999998887765543
No 409
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.37 E-value=23 Score=27.22 Aligned_cols=49 Identities=22% Similarity=0.076 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
.+..+...|...-..|+ |++|+.+|.+++..+.......+++..-..+.
T Consensus 5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r 53 (77)
T cd02683 5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLR 53 (77)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34567778888888886 99999999999999877655555554444443
No 410
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.74 E-value=23 Score=26.48 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHH
Q 005145 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGP-YHPDTLGVYSNLA 649 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~p~~~~~~~~La 649 (712)
+...|.-+-..|++++|+.+|.++++.+...... .+|.....+....
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~ 55 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKM 55 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3445556667899999999999999987665442 2344433333333
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.72 E-value=3.7 Score=38.47 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=53.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005145 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (712)
.....++.+.|.+.|.+++.+ -|.....|+.+|....+.|+++.|.+.|++.+++.+...
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678999999999999999 588999999999999999999999999999999876543
No 412
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.28 E-value=20 Score=26.79 Aligned_cols=47 Identities=26% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 268 (712)
+..+...|...-..|+ +++|+.+|.+++..+.......+++..-..+
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l 51 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQAL 51 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4566778888888886 9999999999999886654433444443333
No 413
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=74.15 E-value=14 Score=39.06 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005145 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG---KLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
.+....|+..|.+++.. .+.....+.+.+.++++.+ +.-.|+.-+..|+++ .+....+++
T Consensus 387 ~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---------n~s~~kah~ 449 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---------NPSIQKAHF 449 (758)
T ss_pred hHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---------ChHHHHHHH
Confidence 34556777778877776 6677778888888877654 444455555555555 667788899
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 522 DVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.|+.++...+++.+|+.+...+....+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999888766554443
No 414
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.05 E-value=2e+02 Score=34.28 Aligned_cols=185 Identities=13% Similarity=0.087 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------H--------hcCCC-C-HHH-HHHHHHHHHHHHHcCCHH
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFK----------T--------NKGEN-H-PAV-ASVFVRLADMYNRTGKLR 491 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------~--------~~~~~-~-~~~-~~~~~~la~~~~~~g~~~ 491 (712)
...+.+|.+|...|...+|+.+|.+|..-.- . ..|.. . +.. ...|...-+++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 3456678888899999999999988865311 1 00110 1 111 334444455566666677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 005145 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571 (712)
Q Consensus 492 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 571 (712)
.+.++..+|++.. +++.|..+..+..+-.-+...|.+-+|.+.+-+-- . ......++..+..+++..
T Consensus 1001 ~vcQlA~~AIe~l-----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np-------d-serrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENL-----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP-------D-SERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHhC-----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC-------c-HHHHHHHHHHHHHHHHhc
Confidence 7777777777664 44567777777777778888888877765543221 1 222335677788888888
Q ss_pred CCHHHHHH-----HHHHHHH-HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHH
Q 005145 572 GNYSDSYD-----SFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAV-ELFEEARSIL 630 (712)
Q Consensus 572 g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~ 630 (712)
|.++.-.+ +-++... +........+......|..|=..+...+++.+|. .+|+.+..+.
T Consensus 1068 g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1068 GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 87653221 1122222 1111111111111134444555667788888775 4577777663
No 415
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.93 E-value=15 Score=39.01 Aligned_cols=102 Identities=14% Similarity=0.036 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---CCHhHHHHHHHHhhc
Q 005145 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSIE 293 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~---g~~~~A~~~~~~al~ 293 (712)
-|+..+.....|.-.+..+. ...|+..|.+++... +....+|.+.+.++++. |+.-.|+.-...|++
T Consensus 370 L~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr 439 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR 439 (758)
T ss_pred chHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc
Confidence 34555566666665555554 777888888887654 45567777788887765 455566666677776
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
+... ...+++.|+.++..++++.+|+.+...+...
T Consensus 440 ln~s---------~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 440 LNPS---------IQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred CChH---------HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 6421 4457999999999999999999887765444
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.55 E-value=6.3 Score=26.44 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.1
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Q 005145 521 TDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
+.||..|..+|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999884
No 417
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.30 E-value=28 Score=34.16 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..+...+..|...|.+.+|+.+.++++.+ +|..-..+..|-.++...|+--.|...|++.-+..+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 34556678889999999999999999998 8988999999999999999999999999887766544
No 418
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=73.04 E-value=1.8e+02 Score=33.26 Aligned_cols=160 Identities=9% Similarity=-0.034 Sum_probs=88.1
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHhHHHHH
Q 005145 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS-LGQYNEAIPV 287 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~-~g~~~~A~~~ 287 (712)
.+.+....++.....+..+-..+...|+ +++-...-.++..++ +..|.+..-|. ...+++. .+.-.++...
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~------pl~~~lWl~Wl-~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIA------PLPPHLWLEWL-KDELSMTQSEERKEVEEL 172 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc------CCChHHHHHHH-HHHHhhccCcchhHHHHH
Confidence 3444455566777777888888888986 665444433333332 12222222221 2233332 3677888889
Q ss_pred HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHH
Q 005145 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (712)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (712)
|++++--... ...-...+......+..+...++++.-...|.+++........ ....+...+..+-..|...-..+
T Consensus 173 ~ekal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 173 FEKALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHH
Confidence 9998865311 0000011112233334445567888889999999886543222 12345556666666666666566
Q ss_pred HHHHHHHHHHHHH
Q 005145 368 EAQKFCQMALDIH 380 (712)
Q Consensus 368 ~A~~~~~~al~~~ 380 (712)
+-+.++...+...
T Consensus 249 qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 249 QVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHHHhcc
Confidence 6777776666543
No 419
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=72.72 E-value=1.1e+02 Score=33.32 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 559 GIEAQMGVMYYM--LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 559 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
.++.+||.+-.. ...-..++.+|.+|+...+.....++. .-|..+|..|.+.+++.+|+.++-+|-...+.
T Consensus 278 mALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 278 MALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544332 233456789999999999998876654 45777899999999999999999998776443
No 420
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.69 E-value=32 Score=36.04 Aligned_cols=119 Identities=11% Similarity=-0.020 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005145 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (712)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~ 400 (712)
.|+.-.|-.-...++... |.........+.++..+|+|+.|...+..+-.+..... .+...+-.
T Consensus 302 ~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--------~~~~~~~r 365 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--------STLRCRLR 365 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--------hHHHHHHH
Confidence 455555555555544442 22333344567788889999999888776655543222 13445556
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
.....|++++|.....-.+ ++......+...-+.....+|-+++|..++++.+.+
T Consensus 366 ~~~~l~r~~~a~s~a~~~l------~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 366 SLHGLARWREALSTAEMML------SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhhchhhHHHHHHHHHHHh------ccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6677888998887765544 233222333333334444567778888888887776
No 421
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.91 E-value=25 Score=26.83 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+..+...|.-+-..|++.+|+.+|+++++.+.+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44566667777889999999999999999876643
No 422
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.69 E-value=39 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
.+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3444455566789999999999999998766
No 423
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=71.49 E-value=32 Score=26.22 Aligned_cols=48 Identities=21% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
+..++..|...-..|+ +++|+.+|.+|+..+.......+++.....+.
T Consensus 6 A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 6 AIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4567777877778886 99999999999999877654444554443333
No 424
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.43 E-value=37 Score=25.91 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC 267 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 267 (712)
+..+...|..+-..|+ +++|+.+|.+|++.+.......+++.....
T Consensus 8 A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~ 53 (77)
T smart00745 8 AKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRREA 53 (77)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4456777777778886 999999999999998776554455444333
No 425
>PF12854 PPR_1: PPR repeat
Probab=71.14 E-value=8.7 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005145 474 ASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
...|..|...|.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56889999999999999999999876
No 426
>PF12854 PPR_1: PPR repeat
Probab=70.00 E-value=10 Score=23.66 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 600 GVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
..+|..|-..|.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 36888999999999999999999986
No 427
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.98 E-value=13 Score=37.55 Aligned_cols=64 Identities=16% Similarity=-0.010 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (712)
.-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..+++..++-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456678889999999999999999999999999999999999999999999998887776543
No 428
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.95 E-value=2.1e+02 Score=32.76 Aligned_cols=151 Identities=10% Similarity=-0.020 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005145 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
+.....+..|-.++...|++++-...-.++.++++-.. .....|..--......+.-.++...|++++.-.....
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-----~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~ 184 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-----HLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP 184 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch
Confidence 44445666777778888888877666666666654321 1111111111111233677788888888873222222
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.....+......+..+...++++.-...|.+++...-.... .-......+..+-..|...-..++-+.++...+..
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 22223333334444456668889999999999886544332 12344556666666666666566667777666655
No 429
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=69.21 E-value=42 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005145 603 LNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
+...|.-+-..|++++|+.+|.++++.+...+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33444555677999999999999999887754
No 430
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=68.18 E-value=46 Score=25.28 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
+..+...|...-..|+ +++|+.+|..|+..+.......+++..-..+.
T Consensus 6 a~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~ 53 (75)
T cd02656 6 AKELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKLLR 53 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3456667777777776 99999999999999877655444444444333
No 431
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.17 E-value=2.2e+02 Score=32.86 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005145 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
=.+|...|+|+.|+++.... +...-.++...|..++..++|..|.++|-+...-+++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 35788899988887765443 2234556888899999999999999999887655543
No 432
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.60 E-value=48 Score=25.32 Aligned_cols=49 Identities=22% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~ 270 (712)
+..++..|...-..|+ |++|+.+|..+++.+........++..-..+..
T Consensus 6 Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 6 AIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4567777877778886 999999999999999776655566655444443
No 433
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=67.03 E-value=1.4e+02 Score=29.83 Aligned_cols=187 Identities=13% Similarity=-0.035 Sum_probs=101.6
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005145 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~ 288 (712)
.+.+--.-.|+....++..|...+.-|. |..|-.++-.-..+. ..+++....++..--..-.-..+|+-|++-+
T Consensus 117 ~L~e~ynf~~e~i~~lykyakfqyeCGN-Y~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL 190 (432)
T KOG2758|consen 117 HLQEHYNFTPERIETLYKYAKFQYECGN-YSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDL 190 (432)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344445567889999999999999995 999988765544443 4455544555543333334467899999988
Q ss_pred HHhhchhhhhhcccchHHHHHHHHHHHH--------HHHHcCCHHHHHHHHH------HHHHHHHHHhCCCChhHHHHHH
Q 005145 289 EQSIEIPVIEEGQEHALAKFAGHMQLGD--------TYAMLGQLENSLMCYT------TGLEVQKQVLGETDPRVGETCR 354 (712)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~--------~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~~ 354 (712)
.+.-+......-. . .+..+.+..+ .+-.-+--+.-++.|- .+++. ..+..+.
T Consensus 191 ~rLre~IDs~~f~-~---~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllR 256 (432)
T KOG2758|consen 191 TRLREYIDSKSFS-T---SAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLR 256 (432)
T ss_pred HHHHHHHcccccc-c---HHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHH
Confidence 8876654211100 1 0111111111 1111111222222221 12221 2334566
Q ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 355 YLAEAHVQA-LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 355 ~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
+|+.+..-. .+...+++-+-+.+..-.-... ++ ....-.+++-.-+|+.|...++++-...
T Consensus 257 YLatAvvtnk~~rr~~lkdlvkVIqqE~ysYk--DP-----iteFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 257 YLATAVVTNKRRRRNRLKDLVKVIQQESYSYK--DP-----ITEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HHHHHhhcchHhhHHHHHHHHHHHHHhccccC--Cc-----HHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 666655544 5566677777776655433221 22 1223345566778999999888775443
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.99 E-value=2.5e+02 Score=32.34 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
.+-.+|...|+|++|+++... .+...-.++...|..++..++|..|.++|-+.+.-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~---------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIART---------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccC---------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 456789999999999987742 1234556788899999999999999999988765433
No 435
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=65.87 E-value=69 Score=31.72 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005145 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (712)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (712)
|..+|.+|+.+.|..+. .|+.||.++...|+.-.|+-+|-+++. -..| ...+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~--------p~nQLAvl~~~~~~~l~avy~y~Rsl~-----~~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN--------PYNQLAVLASYQGDDLDAVYYYIRSLA-----VRIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH--------HHHHHHHHHHHTT-HHHHHHHHHHHHS-----SSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC--------cccchhhhhccccchHHHHHHHHHHHh-----cCCC-cHHHHHHHHHHHHH
Confidence 68899999999998875 699999999999999999999998872 1222 35566677776666
No 436
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=65.48 E-value=13 Score=36.89 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005145 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (712)
|+.+|.+|+.+ .|.....++.||.++...|+.-.|+-+|-+++... .| ...+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~--------~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR--------IP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS--------B---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC--------CC-cHHHHHHHHHHHHH
Confidence 68899999999 88889999999999999999999999999998541 23 25667778777776
No 437
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=64.29 E-value=1.4e+02 Score=32.62 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=77.8
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHH
Q 005145 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AISKL 588 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~ 588 (712)
+..++....... +...+...+....+...+..++...+.. +.+..+|+......|....+...+.. +....
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-------CPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 444566555555 7777788888877777777777654433 34667777777777766666555544 33321
Q ss_pred HHhCCCCChHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005145 589 RAIGERKSAFF--GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 589 ~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
......+ ...++.++.....+|+..++....+++.++ .|....+...+......
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 133 ----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQE 188 (620)
T ss_pred ----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHH
Confidence 1111111 112333788899999999999999999988 55555555555544433
No 438
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=63.86 E-value=22 Score=37.20 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcC-CHhHHHHHHHHhhchhhhh---hcccchHHHHHHHHHHHHHHHHcCCHHHHH--------HH
Q 005145 263 ELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE---EGQEHALAKFAGHMQLGDTYAMLGQLENSL--------MC 330 (712)
Q Consensus 263 ~~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~--------~~ 330 (712)
....++..+|..|.... +.-.|+.++.++++..... .....+.. -.++.-|...-+..+-. .+
T Consensus 243 ~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~-----p~~ay~~~re~~~~~elE~lv~D~d~~ 317 (615)
T KOG0508|consen 243 SRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLE-----PVLAYGYGREVNNREELEELVEDPDEM 317 (615)
T ss_pred hHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCC-----chhhhhhhhhcCCHHHHHHHhcChHHH
Confidence 34566667777765433 4566777777777664320 00011110 01111111111111111 22
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005145 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (712)
Q Consensus 331 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~ 403 (712)
--+++-+.++++|+.+|+........|.+|...|+++..++++.-|+.+.++...|-.+..+..+...+.++.
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 3356777788899999998888888899999999999999999999999999988877777777777666553
No 439
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.78 E-value=1.6e+02 Score=29.10 Aligned_cols=140 Identities=12% Similarity=0.040 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-----hHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005145 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-----RVGETCRYLA-EAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
.+-.-+..+.-..+|..|+..++++++..........+ +....+..+| .++..+++|.+++.+..+-...-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 45556677777889999999999999876321111111 2222233333 46678899999888876655443333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 384 ~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
. +.++-.-..+|.+.+++...++.-..-+..-........-..+-..+-.++.=.|.+++|+++..
T Consensus 117 P-------pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 P-------PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2 23444555678888998888777665542211111111122223344455566899999998874
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.71 E-value=30 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--HHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFE--EARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~--~al~~ 629 (712)
..+..+|-.+..+|++++|+.+|. -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 356778999999999999999954 55544
No 441
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.57 E-value=26 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHH--HHHHhcc
Q 005145 670 DEKRRLAELLKEAGRVRSRKAQSLE--TLLDANS 701 (712)
Q Consensus 670 ~~~~~la~~~~~~g~~~~A~~~~l~--~~l~~~p 701 (712)
+.+..+|..+..+|++++|. ..|. -+...++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~-~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAI-HFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhcc
Confidence 45788999999999999999 8844 5554443
No 442
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.22 E-value=1.8e+02 Score=29.51 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.+-+.-|..+...|++.++..++.+++-+
T Consensus 214 Yv~Yl~~lf~a~n~dv~kg~~~~~e~~gi 242 (449)
T COG3014 214 YVSYLSGLFYALNGDVNKGLGYLNEAYGI 242 (449)
T ss_pred HHHHHHHHhcccCccHhHHHHHHHHHhcc
Confidence 34455566777778888998888888877
No 443
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.95 E-value=64 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-CCChhhHHHHHH
Q 005145 606 MGLACVQRYSINEAVELFEEARSILEQECG-PYHPDTLGVYSN 647 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~~~ 647 (712)
.|.-.-..|++++|+.+|.++++.+..... ..+|.....+..
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~ 54 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRA 54 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 344455679999999999999998876543 234444333333
No 444
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.55 E-value=52 Score=31.47 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=63.5
Q ss_pred HHHcCCHhHHHHHHHHhhchhhhhhc---ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005145 275 YCSLGQYNEAIPVLEQSIEIPVIEEG---QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
.+..|+|+.|+++..-+++.....+. .+.+...+.-...-+......|+.-+. .++.....+. ....-.+.-.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHHH
Confidence 45679999999999999987543322 122222233334444455555552211 1222322232 211222334455
Q ss_pred HHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHHhcCC
Q 005145 352 TCRYLAEAHV---------QALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 352 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.+..+|..+. ..++...|+.++++|+.+.++.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 6666777673 456888999999999999887764
No 445
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.45 E-value=5.5e+02 Score=35.04 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH---HHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005145 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT---DVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
..+.+.+..|.+....|-++.++..+.+...+- .-.+..+.. .-+.+|.... ..+..+++...
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp--------~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~ 2799 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLP--------NVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIE 2799 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccC--------cchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHh
Confidence 345566666667777777777766666555441 111222222 2233333332 22333343333
Q ss_pred hCC---CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 005145 549 DAP---GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (712)
Q Consensus 549 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~ 610 (712)
+.- =.....+..+...|....+.|+.++|-..|..|+++.... ..+|...|...
T Consensus 2800 sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l--------~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2800 STNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGL--------GKAWAEWGKYL 2856 (3550)
T ss_pred cccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhh--------HHHHHHHHHHH
Confidence 220 0112445677788999999999999999999999986443 34555555433
No 446
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.84 E-value=69 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 606 MGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
.|.-+-..|++++|+.+|.++++.+.....
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 344455679999999999999998877654
No 447
>PF13041 PPR_2: PPR repeat family
Probab=61.52 E-value=25 Score=24.02 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
.+|+.+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46777888899999999999999988764
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.10 E-value=2.1e+02 Score=29.78 Aligned_cols=60 Identities=8% Similarity=-0.037 Sum_probs=41.2
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 005145 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 582 (712)
...+..++..++|..|...|..++..... +........+..+ |..++..-++++|.++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLS--AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccC--hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34556788999999999999999866322 2222223344444 445567889999999998
No 449
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.08 E-value=15 Score=21.68 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466778899999999999999998654
No 450
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=2.8e+02 Score=30.45 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=77.0
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHH
Q 005145 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN-ALRIY 504 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~ 504 (712)
...+....... +...+...++...+.-.+..++.. ++..+.+..+|+......|....+...+.. +....
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 34555555555 777778888888888888888877 788888999999988887776666655544 44442
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
... ..........+ .++.....+|+..++...+.++..+.+..
T Consensus 133 ~~~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 133 PDN--AEFLGHLIRFY-QLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred cch--HHHHhhHHHHH-HHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 210 00000112222 36888888899999999999988887765
No 451
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.80 E-value=14 Score=21.82 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005145 671 EKRRLAELLKEAGRVRSRKAQSLETLLDA 699 (712)
Q Consensus 671 ~~~~la~~~~~~g~~~~A~~~~l~~~l~~ 699 (712)
+|..+-..|.+.|++++|. +.|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~-~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEAL-EVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHH-HHHHHHhHC
Confidence 4677889999999999999 999988764
No 452
>PRK09169 hypothetical protein; Validated
Probab=58.56 E-value=5.4e+02 Score=33.62 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCh
Q 005145 616 INEAVELFEEARSILEQECGPYHP 639 (712)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~p 639 (712)
+.+.-.+-+-++.+........+|
T Consensus 763 wp~~~~c~~a~~~La~~lg~~~~p 786 (2316)
T PRK09169 763 WPQEPACQQAALLLAERLGSAGLP 786 (2316)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCc
Confidence 333334444455555554444444
No 453
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.48 E-value=70 Score=35.73 Aligned_cols=180 Identities=12% Similarity=0.046 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHhcC
Q 005145 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN---RTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.+.+..++-..|....+|+.-+++.+..-.+-.... ......+.+..+..+. +-|+-++|+...-.+++.-..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~---vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~- 275 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK---VVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP- 275 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh---hhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC-
Confidence 355566777778888999988877766544410000 0011112222333333 347778888777777765322
Q ss_pred CCCCCChhHHHHHHHHHHHHHH---------cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-HHHH
Q 005145 508 VPGVPPEEIASGLTDVSSIYES---------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDS 577 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 577 (712)
.. ...++..|++|.. .+..+.|+++|++|.+..+... .-.+++.++...|+ |+..
T Consensus 276 ----va---pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~--------sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 276 ----VA---PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY--------SGINLATLLRAAGEHFENS 340 (1226)
T ss_pred ----CC---CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh--------ccccHHHHHHHhhhhccch
Confidence 22 3345666666654 4567889999999988766442 22355666666553 4444
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHH
Q 005145 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACV---QRYSINEAVELFEEARSI 629 (712)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~ 629 (712)
.++-.-++.+-.-++....-....-|...|..+. -.+++.+|+..-+...++
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 4444434443333333322222223333332222 346777777766666655
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.25 E-value=66 Score=27.49 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 005145 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (712)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (712)
=..+++++++.+...-.-.+++....+|...+... ++ +.++|.-.... +.-...+..|...|..+...|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g 113 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAG 113 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcC
Confidence 34556666665544322344666677777777653 33 44455443321 333455667888899999999
Q ss_pred CHHHHHHHHHH
Q 005145 573 NYSDSYDSFKN 583 (712)
Q Consensus 573 ~~~~A~~~~~~ 583 (712)
++.+|...|+.
T Consensus 114 ~~~~A~~iy~~ 124 (125)
T smart00777 114 RYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHc
Confidence 99999998864
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=58.12 E-value=1.6e+02 Score=27.29 Aligned_cols=131 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005145 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (712)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (712)
+++=.+.=++++.+..... .+...+......|++++|...+++|............-...++.-|.+-..+
T Consensus 12 L~e~d~~REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~ 82 (204)
T COG2178 12 LQEKDKAREEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTAL 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchH
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHHHh
Q 005145 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM----------YNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~~~A~~~~~~al~~~~ 505 (712)
..|-+|...|.-.-.-......+-..........+|.+ ....|+++.|..+++-.-.++.
T Consensus 83 QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~ 152 (204)
T COG2178 83 QEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYE 152 (204)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
No 456
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=57.95 E-value=1.9e+02 Score=28.14 Aligned_cols=183 Identities=16% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005145 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
..+|.+....++|++.+.+.++++++... ......-.+.|..+|- ..|....+...+.. ++.-.... + ..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~-~--~~ 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESR-G--NE 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhcc-C--ch
Confidence 34677777888888888888887664210 0111222333344432 24555555555554 22211100 0 11
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC--C--cHHHHHHHHHHHHHHc-----CC-----HHHHHHH
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ--S--TVAGIEAQMGVMYYML-----GN-----YSDSYDS 580 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~--~~~~~~~~la~~~~~~-----g~-----~~~A~~~ 580 (712)
. ...+..-|.. .=-++=..+....+.+.....-+. . .....+-..|..|... |+ .+.|...
T Consensus 76 ~----~~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 D----HVASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred H----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0 0011111110 001233344555555554432211 1 1111222334444332 22 4588999
Q ss_pred HHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005145 581 FKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 581 ~~~al~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
|+.|++++.. +.+.+|..++.+++.---.|.-+++.++|..+.++|++-.-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999876 566665555555555445566779999999887777765443
No 457
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.25 E-value=85 Score=23.98 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
.+..++..|...-..|+ |++|+.+|..+++.+........++..-..+.
T Consensus 5 ~A~~l~~~Ave~d~~~~-y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir 53 (75)
T cd02677 5 QAAELIRLALEKEEEGD-YEAAFEFYRAGVDLLLKGVQGDSSPERREAVK 53 (75)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34566777777777886 99999999999999987655555555544443
No 458
>PF13041 PPR_2: PPR repeat family
Probab=57.15 E-value=45 Score=22.73 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.+|+.+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 57888889999999999999999998764
No 459
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.04 E-value=2.3e+02 Score=28.99 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCCC
Q 005145 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL-DIHKDNGSP 386 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 386 (712)
+..+..++......+.....+....+|+.-.... ......++..+-.+....++|.-+..++.--+ +++.....
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h- 176 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH- 176 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC-
Confidence 3456677777777788777788888887765432 11444556666677777888877776665433 33222222
Q ss_pred CCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005145 387 ASLEE-AADRRLMGLICETKGDHEAALEHLVLAS 419 (712)
Q Consensus 387 ~~~~~-a~~~~~la~~~~~~g~~~~A~~~~~~al 419 (712)
.++.. ...++.-|.+|....+++.|+.+|..++
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 22222 2334445778889999999999999886
No 460
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=56.76 E-value=22 Score=37.10 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhCCCCCCcHHHH-HHHHHHHHHHcCCHHHHHHHH--------HHHH
Q 005145 516 IASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGI-EAQMGVMYYMLGNYSDSYDSF--------KNAI 585 (712)
Q Consensus 516 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~--------~~al 585 (712)
...++..+|..|... .+.-.|+.++.++++..... +........ --.++.-|...-+..+-.+.+ -+++
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~-~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaL 322 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESD-GESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQAL 322 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhc-cccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHHH
Confidence 455566666666543 35667888888888766542 111000000 001111111111111111111 2344
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005145 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
-+.+.+.+..++.........|-+|...|+++..++++.-|+.+.++.+.|-.|.+...+...|.++..+
T Consensus 323 iirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 323 IIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 4444454444444444445567899999999999999999999999999999999999999999887654
No 461
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.32 E-value=2.5e+02 Score=32.83 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhc----CC
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRIYEK----PV 508 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~----~~ 508 (712)
|..|+.+|...|++++|++.+.+...-... ........+-.+-..+...+.- +-..++..-.+..... ++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 566777888888888888888776653210 0122222333333333333332 3333333332221111 00
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--------cCCHHHHHH
Q 005145 509 PGVPPE-EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--------LGNYSDSYD 579 (712)
Q Consensus 509 ~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~ 579 (712)
.. ... .....-.....-|+.....+-++.|++.++...... +. .....++..|.. .++-+++.+
T Consensus 583 t~-~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~E 655 (877)
T KOG2063|consen 583 TS-EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-ST-----LLHTVLLKLYLEKVLEQASTDGKGEEAPE 655 (877)
T ss_pred ec-cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-ch-----HHHHHHHHHHHHHHhhccCchhccccchh
Confidence 00 011 001111112223456677888899999988765542 11 112222222222 122335555
Q ss_pred H--HHHHHHHHHHhCCCCChH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 580 S--FKNAISKLRAIGERKSAF------FGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 580 ~--~~~al~~~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
. .++..........-++.. ....|...+.++.++|+.++|+..|-.-+.
T Consensus 656 ~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 656 TTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 5 444444433322111111 124667778888899999999998866554
No 462
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.26 E-value=25 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
+|+.+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356677889999999999999998754
No 463
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.87 E-value=92 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005145 606 MGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
.|.-.-..|++++|+.+|..+++.+.....
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 344455669999999999999998877653
No 464
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.82 E-value=2.2e+02 Score=27.89 Aligned_cols=120 Identities=11% Similarity=-0.033 Sum_probs=83.7
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005145 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (712)
...-..|+.+...++.+.+.... ++...-.++. ...+..+-++++.+.+ .+.|....++...-.+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYT--------VW~yRr~iL~~l~~dL~~El~~l~eI~------e~npKNYQvWHHRr~i 121 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYT--------VWQYRRVILRHLMSDLNKELEYLDEII------EDNPKNYQVWHHRRVI 121 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccch--------HHHHHHHHHHHhHHHHHHHHHHHHHHH------HhCccchhHHHHHHHH
Confidence 34456677777778777665542 2333333332 3345667777777666 4566667778777778
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 442 YLSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 442 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
....|++. .-++..+.++.. +.....+|...-.+...-+.++.-+.+..+.++.-
T Consensus 122 ve~l~d~s~rELef~~~~l~~--------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDD--------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHhcCcccchHHHHHHHHhc--------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88888887 667777777775 56667788888888888888999999998888763
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.13 E-value=27 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 476 VFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+|..+-..|.+.|++++|..+|.+....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677888899999999999999987653
No 466
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.68 E-value=1e+02 Score=23.53 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=27.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHHH
Q 005145 608 LACVQRYSINEAVELFEEARSILEQEC-GPYHPDTLGVYSNL 648 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~p~~~~~~~~L 648 (712)
.-.-..|++++|+.+|..+++.+.... ...+|.....+...
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k 55 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQK 55 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 334457899999999999999887755 33445444443333
No 467
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.76 E-value=2.6e+02 Score=27.63 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005145 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-----AVASVFVRL-ADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.+-.-+..+.-..||..|+...+++++..........+ ..-..+..+ ..++..++++.+++.+.-+-.+.-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 33444566666778888888888888876332111111 111122222 245778899999887766655543332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005145 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
++ .++..-..+|.+.+++....+.-..-+.. +.+.+....-.-+-..+-.++.=.|.+++|.++..
T Consensus 117 -----Pp---kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 -----PP---KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred -----CH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 33 34455556788999988877766655543 22111111111122234445555799999988773
No 468
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.20 E-value=1.1e+02 Score=23.37 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (712)
+...|.-+-..|+|++|+.+|.++++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344455566788999999999998888665
No 469
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.72 E-value=1.7e+02 Score=26.15 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC------------------------------CCCCHHHHHHHHHHH
Q 005145 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN------------------------------GKPSLELVMCLHVIA 272 (712)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~------------------------------~~~~~~~~~~l~~la 272 (712)
.....++..+..|+ .++|+....+|...++.... ..............+
T Consensus 4 ~~i~~Ar~aL~~g~-~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQGD-TDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 34567888889987 99999999998887753210 000122344556678
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005145 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 336 (712)
.-....|+...|.+.++.+-.-.. .....-|..........+..+...|++.+|...+..++.
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~ei~-~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGSEID-ITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-EEE-EEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcccce-eeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999987643211 111223344455567888999999999999999988875
No 470
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=49.05 E-value=43 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
.|..+-.++.+.|+++.|..+|....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999988665
No 471
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=48.63 E-value=3.4e+02 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcCC----C----CCCChhHHHHHHHHHHHHHHc--c-------cHHHHHHHHHHHHHHHHhC
Q 005145 491 RESKSYCENALRIYEKPV----P----GVPPEEIASGLTDVSSIYESM--N-------ELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 491 ~~A~~~~~~al~~~~~~~----~----~~~~~~~~~~~~~la~~~~~~--g-------~~~~A~~~~~~al~~~~~~ 550 (712)
..|+.+|+..+..+.... + .+.......+++.+|++|.+. + .+..++.+|+.++..+...
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~ 342 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKH 342 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457777888777766421 1 111223567888999998876 3 4455555555555555443
No 472
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=31 Score=34.83 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 397 LMGLICETKGDHEAALEHLVLASMTMIAND-------------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
..+.-.+..++++.|..-|.+++....... ........+.+++.+-+..+.+..|+.....++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 345556777888888888887775544100 11122344567788888889998888887777763
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.+....+++..+..+....++++|++.++.+...
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 6777889999999999999999999999998776
No 473
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.33 E-value=1.2e+02 Score=35.13 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=52.2
Q ss_pred HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 005145 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608 (712)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~ 608 (712)
..|++..|+-.+..++-.....+...+....-...-+..+-..|....|+.+|.+++..+....-... ....++.++.
T Consensus 287 ee~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~--edh~~f~i~~ 364 (960)
T KOG1938|consen 287 EEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFA--EDHLYFTILH 364 (960)
T ss_pred cCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchh--HHhHHHhHHH
Confidence 34455666666666665542222222211111112345566677899999999999987654322211 1245566666
Q ss_pred HHHHhCCHHHHHHHHHHHHHH
Q 005145 609 ACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~ 629 (712)
.|.-. ..+.|-..|.+.+..
T Consensus 365 ~y~l~-~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 365 VYLLC-QEDDADEEFSKLIAD 384 (960)
T ss_pred hhhhh-cchhHHHHHHHHHhh
Confidence 44433 335566666665544
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.04 E-value=57 Score=25.22 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005145 604 NQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
...|..+...|+.++|+.+|++++..+.+-+.-
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai 44 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAV 44 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 334444556689999999999999988776653
No 475
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=47.23 E-value=29 Score=30.98 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC------C------------------------C--CCcHHHHHHHHHHH
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAP------G------------------------Q--QSTVAGIEAQMGVM 567 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~------------------------~--~~~~~~~~~~la~~ 567 (712)
....++..+..|+.++|...+.+|........ . . ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 44667788889999999999998876654210 0 0 01123345567778
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
....|+...|.+.++-+-.-..-....-|-.........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999999888776522000000000111223455677888999999999999998875
No 476
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.04 E-value=48 Score=19.96 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..|..+...+.+.|+++.|..+|+...+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35778889999999999999999887653
No 477
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.74 E-value=6.5 Score=43.29 Aligned_cols=175 Identities=11% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005145 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (712)
.....+..-+..+...|++..|...+.+.-...- . ...........+.+....|+++.|+..+... .. ..+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L---~-~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~-~~l--- 92 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQL---S-PSQQARYQLLRARLALAQGDPEQALSLLNAQ-DL-WQL--- 92 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccC---C-hHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-Cc-ccC---
Confidence 3455667778899999999999998886652110 1 1122234456788899999999999988751 11 111
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHccchhhhCCCChhHHHHHH
Q 005145 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTYDAIGREEKLGTANPDVDDEKR 673 (712)
Q Consensus 595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~ 673 (712)
........+...+.++...|++-+|...+-..-.++... ..... ...+|..|..+= .................|.
T Consensus 93 ~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~--~~~~~N~~~iW~~L~~l~--~~~L~~~~~~~~~~l~GWl 168 (536)
T PF04348_consen 93 PPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLLPDP--QERQENQDQIWQALSQLP--PEQLQQLRRASEPDLQGWL 168 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCh--HHHHHHHHHHHHHHHcCC--HHHHHhhhcCCCHHHHHHH
Confidence 122234566778899999999888888766655543210 00111 111122121110 0012223333444456788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005145 674 RLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 674 ~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.|+.++...+....+....++.....+|+
T Consensus 169 ~La~i~~~~~~~p~~l~~al~~Wq~~yP~ 197 (536)
T PF04348_consen 169 ELALIYRQYQQDPAQLKQALNQWQQRYPN 197 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhCcC
Confidence 89888888544444333566666666665
No 478
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.02 E-value=50 Score=19.44 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005145 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
|+++.|...|++++.. .|.....+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 5678899999999987 66666666655543
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.83 E-value=1.1e+02 Score=23.59 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005145 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
+...|..+-..|+.++|+.+|++++.......
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 34444555566888888888888888877643
No 480
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.95 E-value=1.7e+02 Score=28.71 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005145 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
........++=..+...++++.|..+.++.+.+ .|..+.-+...|.+|.++|.+.-|++-+...++.+..
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 344566677778888999999999999999998 7777777888999999999999999999998887544
No 481
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.84 E-value=4.2e+02 Score=28.30 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHH
Q 005145 231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG 310 (712)
Q Consensus 231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 310 (712)
.+..|| ...|-.-...++.-+ +..|.. ....+.++..+|.|+.|...+.-+-.+. +..+. +
T Consensus 299 ~~~~gd-~~aas~~~~~~lr~~------~~~p~~---i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~~-----~ 359 (831)
T PRK15180 299 QLADGD-IIAASQQLFAALRNQ------QQDPVL---IQLRSVIFSHLGYYEQAYQDISDVEKII----GTTDS-----T 359 (831)
T ss_pred HhhccC-HHHHHHHHHHHHHhC------CCCchh---hHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCch-----H
Confidence 455676 777766666666543 222333 3345888999999999998886654432 12221 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005145 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
...+-.....+|++++|.....-.+.- .-+..++...-+.....+|-++++..++.+.+.+.+.
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 344455667778888887766554432 1122233333344445567788888888888877654
No 482
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.76 E-value=4.4e+02 Score=28.53 Aligned_cols=180 Identities=9% Similarity=0.042 Sum_probs=103.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005145 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (712)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (712)
+-.++...-.+.-....+.+.+.+ ...-.++..++.+|... ..++-..++++..+.. ....
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------fnDv 132 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------FNDV 132 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------chhH
Confidence 334444455556666777777776 22345788899999888 4566666777777662 2223
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005145 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
..-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-.. --.+.+.-+... ..+-...+...
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~fl~l~---~kiqt~lg~~~-- 203 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFFLRLQ---KKIQTKLGEGR-- 203 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHHHHHH---HHHHHhhccch--
Confidence 444567777766 88999999999998765332 1112223333333221 122333322222 22222333221
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005145 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
...++..+-.-|....++.+|++.+.-.++. +.....+..++...+..
T Consensus 204 -~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 204 -GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRD 251 (711)
T ss_pred -HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHH
Confidence 1233444446677778999999988888876 44555566666655543
No 483
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.34 E-value=1.5e+02 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005145 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
......+...+..|++.-|.++...++.. +|+...+....+.+|..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHH
Confidence 34556677778899999999999999988 88888899999999988875
No 484
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.30 E-value=6.5e+02 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 005145 604 NQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
..|+.-+..++++-+|.....+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 3445555555666666555555544
No 485
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.61 E-value=1.4e+02 Score=22.87 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEI 254 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~ 254 (712)
.+..+...|...=..|+ |++|+.+|..|++.+-.
T Consensus 5 kai~Lv~~A~~eD~~gn-y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGN-AEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhh-HHHHHHHHHHHHHHHHH
Confidence 34566677766667775 99999999999999865
No 486
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.52 E-value=4.2e+02 Score=27.69 Aligned_cols=58 Identities=16% Similarity=-0.019 Sum_probs=38.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 005145 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYT 332 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~ 332 (712)
.+..++..++|..|...|++++..... +.... .+..+..+ |..++..-++++|.++++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~~--~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS--AVNHT--FYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC--hhhhh--HHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455678899999999999998865311 11111 23334444 445566778899999998
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.29 E-value=3.1e+02 Score=32.10 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhCCCC
Q 005145 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQ 553 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~ 553 (712)
-+..|+.+|...|++++|++++.+...-... ........+..+-..+...+.. +-..++-.-.+...+.. +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-he
Confidence 4667899999999999999999988764310 1122233333344444444433 44444444443332221 10
Q ss_pred C------CcHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 554 Q------STVAGI-EAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 554 ~------~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
. ...+.. -.....-|......+-++.|++.++...+
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR 622 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc
Confidence 0 000001 11122234566778888999999887643
No 488
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=42.23 E-value=52 Score=31.72 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005145 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (712)
-....|.+++..|+..+...++...+..+.+..+..|+...+|+.|..+|..|+.++..
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999988888888888888888889999999999999999999998654
No 489
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=41.75 E-value=3.8e+02 Score=27.01 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-
Q 005145 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG- 510 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 510 (712)
......+-..+ ..+++.+.++..++.+.. .|.........+.++.+.| ++.+.......+..+-..+++
T Consensus 100 ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~--------~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L 169 (301)
T TIGR03362 100 ADRVADYQELL-AQADWAALLQRVEQSLSL--------APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGL 169 (301)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcCh
Q ss_pred -------CCChhHHHHHHHH------------------------------HHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005145 511 -------VPPEEIASGLTDV------------------------------SSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (712)
Q Consensus 511 -------~~~~~~~~~~~~l------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (712)
..+.....+...| +..+...+..+.|+..++..+... ..
T Consensus 170 ~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~----~s 245 (301)
T TIGR03362 170 LELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA----RE 245 (301)
T ss_pred hhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----CC
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005145 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
..........++.++...|.++-|..+|+...+..+...
T Consensus 246 ~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~ 284 (301)
T TIGR03362 246 PRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLG 284 (301)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
No 490
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=39.69 E-value=6.7e+02 Score=29.23 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhC-----------------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHH
Q 005145 347 PRVGETCRYLAEAHVQAL-----------------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE 409 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~ 409 (712)
|........++.-+.... ...+-.++..+.+........ ........+..-|.+.-..|--+
T Consensus 531 P~LIf~~lkL~r~~~~~~~~~~~~~~~~~~~~~~~~~~kifkfi~~~i~~L~~~~~-~~~lalkL~Lq~A~~AD~~~~e~ 609 (762)
T PF03635_consen 531 PPLIFAALKLARRIKDLKQKYPNNAIKDDDEDWEKKCKKIFKFIHQCISALYQIHP-SSELALKLYLQAAIVADQCGLEE 609 (762)
T ss_dssp HHHHHHHHHHHHHHHCCC---------CT-TTHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHHHHhhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHhccC-chhhhHHHHHHHHHHHHhhCcHH
Q ss_pred HHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Q 005145 410 AALEHLVLASMTMI-ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHPAVASVFVRLADMYNR 486 (712)
Q Consensus 410 ~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~ 486 (712)
-|.++|.+|..+++ ...+......+...+...+.....+. .+.|+.....+...... ..|+..++...-+.+++.
T Consensus 610 iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~--~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~ 687 (762)
T PF03635_consen 610 IAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFS--EENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWS 687 (762)
T ss_dssp HHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC
Q ss_pred cC----------CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005145 487 TG----------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 487 ~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.. +-...+++++++++++.....+...-....-..+....|+..|...--.++....+++..+.
T Consensus 688 ~~~~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~ 761 (762)
T PF03635_consen 688 TEISEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKEN 761 (762)
T ss_dssp -B-TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC
T ss_pred CCCCccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcC
No 491
>PRK12798 chemotaxis protein; Reviewed
Probab=39.53 E-value=4.8e+02 Score=27.49 Aligned_cols=214 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005145 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (712)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (712)
+.....+.-+..|..-|..|+ ..+|...+..... ....+.+.-.+....-..+...+..+|+.+|+.+--+
T Consensus 107 d~~~~~d~~L~~g~laY~~Gr-~~~a~~~La~i~~-------~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl- 177 (421)
T PRK12798 107 DKLGNFDQRLADGALAYLSGR-GREARKLLAGVAP-------EYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL- 177 (421)
T ss_pred CCCChhhHHHHHHHHHHHcCC-HHHHHHHhhcCCh-------hhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh-
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005145 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (712)
.......-.++..--.+....|+.+++..+-.+-+..+.. .+.....+..+........ -+.-...+..
T Consensus 178 -----aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~-----S~YA~~F~~~F~~~~~~~~-d~~~~~~l~~ 246 (421)
T PRK12798 178 -----APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH-----SPYASQFAQRFVDLVVRLD-DEIRDARLVE 246 (421)
T ss_pred -----CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhcc-ccccHHHHHH
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005145 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (712)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (712)
.+... +......+|..++..-...|+.+-|.-.-.+++.+. .........+....+....-..++++|+..+
T Consensus 247 ~ls~~------d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~--~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L 318 (421)
T PRK12798 247 ILSFM------DPERQRELYLRIARAALIDGKTELARFASERALKLA--DPDSADAARARLYRGAALVASDDAESALEEL 318 (421)
T ss_pred HHHhc------CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHccCcccHHHHHHHH
Q ss_pred HH
Q 005145 456 QK 457 (712)
Q Consensus 456 ~~ 457 (712)
..
T Consensus 319 ~~ 320 (421)
T PRK12798 319 SQ 320 (421)
T ss_pred hc
No 492
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.20 E-value=1.1e+02 Score=31.30 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005145 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (712)
...+..++......+. +...+....+|+..+.... -....++..+-.+....++|.-+..++.--+.-.....+
T Consensus 102 ~~lc~~l~~~~~~~~~-p~~gi~ii~~av~k~~~~~-----~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~ 175 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNK-PLRGIRIIMQAVDKMQPSN-----GQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANP 175 (422)
T ss_pred HHHHHHHHHHHHhcCC-ccccchHHHHHHHHhccCc-----cchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCC
Confidence 4455666777776665 7777788888877664321 122334444556666777777766665433322111122
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
..++...+..++.-|.++....+|+.|+.+|..++-+
T Consensus 176 h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 176 HLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3344434444566678888999999999999998876
No 493
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.13 E-value=1.8e+02 Score=22.23 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred HhCCHHHHHHHHHHHHHHHHH
Q 005145 612 QRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~ 632 (712)
..|++++|+.+|..|++.+..
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 468999999999999998766
No 494
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=38.11 E-value=3e+02 Score=24.70 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005145 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
++-+-|...++..+..... .- .-.+...+..+-...|.|.+|..++.+.++.- ....+..+|..++++
T Consensus 71 ~N~eLa~~tLEnLvt~snT------Ki-kEiA~leqva~kis~~~~~eaK~LlnkIi~nk-----~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSNT------KI-KEIAALEQVAIKISEKKYSEAKQLLNKIIENK-----EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHccch------HH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh-----hHHHHHHHHHHHHHH
Confidence 4555566666665544211 11 11233344445567789999999999988752 234556778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.....+-.--++--++..+.+--..++..|+.+.+-...+..-...|.-.+|...++..+.-
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 87766544334444444444444455566777777666777777889999999998887653
No 495
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=38.11 E-value=97 Score=33.19 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=7.0
Q ss_pred cccccccccc
Q 005145 5 IMDDIHEEGV 14 (712)
Q Consensus 5 ~~~~~~~~~~ 14 (712)
|.+|+|.+|.
T Consensus 19 vssgi~inge 28 (782)
T PF07218_consen 19 VSSGIHINGE 28 (782)
T ss_pred hhccceeccc
Confidence 5677777765
No 496
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=37.85 E-value=46 Score=33.71 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=71.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005145 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-----------ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
..+.-.+..++++.|..-+.+++......... ........+.+++.+-...+.+..|+.....++.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 34555677788888888888877665421100 0111223456677777888888888776665553
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005145 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
..+....+++..+..+....++++|++.++.+...
T Consensus 304 ---~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 ---DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ---cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 56667788999999999999999999999999876
No 497
>COG3899 Predicted ATPase [General function prediction only]
Probab=37.16 E-value=7.7e+02 Score=29.21 Aligned_cols=262 Identities=16% Similarity=0.047 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005145 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
.+..++..|+.....-. +..|+.++..++.+.......+........+......-+..+++..+..++...+..
T Consensus 438 l~~l~l~Ag~ka~~~~a-~~~A~~~~~~~~~ll~~~~~~~~~~l~l~~~~~~~~~a~~~~~~~~~e~~~~~~~~~----- 511 (849)
T COG3899 438 LAELNLLAGRKAKLRSA-YSAAISYLERGLSLLLADAWQNQYLLALMLHRLAAENAYLRGQFELSESLIEVVLIC----- 511 (849)
T ss_pred HHHHHHhcchhhhhchh-hHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH-----
Confidence 34455666666666655 899999999999887543211111111111111122223345555555555533322
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005145 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (712)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (712)
..........+......+..+++..+|+..-..++......... .+.....+..........++ ......+ .
T Consensus 512 -~~~~~~~~~~~~~~i~~~~~q~~~~~ai~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~ 583 (849)
T COG3899 512 -AASNLDGAKVYELVIQAYTAQKQRLEAIALGQNALQLLGIAFPE-KPCLAELNQAGEEINQLLGD-----RAIEELL-N 583 (849)
T ss_pred -hhhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHhhhh-----hhHHHHH-h
Confidence 12222233445555555667777777777755555443322211 11111111111111111111 0011111 1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHH
Q 005145 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA----SMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFA 454 (712)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~ 454 (712)
.+....+... ....+......+-|..+...+... .......++......++...+.+... .+++..+..+
T Consensus 584 ~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gn~~~s~~~~~~~~~~~~~~~~~~~~~y~~ 658 (849)
T COG3899 584 LPAMTDPDKL-----AALRILLNLILALFLTAPNLFPLIILTIVTLSLKYGNSSESAAAYVRYGDILNSFLGDFEKAYEF 658 (849)
T ss_pred ChhccchhHH-----HHHHHHHHhhHHHHhhchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111111111 111111111122222222222222 22223345555556666666655554 4888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 005145 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRI 503 (712)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 503 (712)
...++....... .......+..++......... .+++..+...+..
T Consensus 659 ~~~a~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (849)
T COG3899 659 GKLALQLLEKFN---AKELKSKWYLEAGVFILHWNDHLKETISLFKEGLVA 706 (849)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 888888766542 333344444455544444444 4455555555444
No 498
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.10 E-value=1.4e+02 Score=29.32 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005145 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (712)
Q Consensus 263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 338 (712)
.....+.++=..+...++++.|....++.+.+. |+++.. +...|.+|.++|.+.-|+.-+...++.+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~-----P~dp~e----irDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLN-----PEDPYE----IRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC-----CCChhh----ccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 345566677788899999999999999999886 666543 6778999999999999999999877774
No 499
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=36.55 E-value=1.9e+02 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc-CCCChhh
Q 005145 610 CVQRYSINEAVELFEEARSILEQEC-GPYHPDT 641 (712)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~p~~ 641 (712)
.-..|++++|..+|..+++.+.... ...+|..
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~ 48 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPER 48 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence 3345899999999999999887754 3334433
No 500
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.11 E-value=1.2e+02 Score=34.12 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHH
Q 005145 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE---TKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 422 (712)
+...+.+..++-..|....+|+.-+++.+..-.+- +.... .....+.+..+.++. .-|+-++|+...-.+++
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP-~t~~v--ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve-- 271 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP-DTLKV--VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE-- 271 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCc-chhhh--hccCceEEEeeehhcccCCCccHHHHHHHHHHHHH--
Confidence 33445666777778888889988887776544332 11100 000001111222222 35777888777655543
Q ss_pred HhCCCChhHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 005145 423 IANDQDAEVASVDCSIGDTYL---------SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 489 (712)
.. .+.....|+..|++|- ..+..+.|+.+|++|.+. .|. ..+-.+++.++...|+
T Consensus 272 -~e--g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--------eP~-~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 272 -KE--GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--------EPL-EYSGINLATLLRAAGE 335 (1226)
T ss_pred -hc--CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--------Cch-hhccccHHHHHHHhhh
Confidence 22 2223344555566554 345567889999999886 443 2344566666666654
Done!