BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005147
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 97/264 (36%), Gaps = 92/264 (34%)
Query: 67 SLRQWL------DKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSF 118
+L+ W+ ++ +RSV CLHIF QI E V HS+G++ +++PS F M
Sbjct: 101 NLKDWMNGRCTIEERERSV----CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV 156
Query: 119 NHVSFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT 178
V D LVTA
Sbjct: 157 VKVG-----------------------------------------------DFGLVTAMD 169
Query: 179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWY 238
D E + + AY H V T Y
Sbjct: 170 QDEEEQTVLTPMPAYARHTGQVG---------------------------------TKLY 196
Query: 239 ASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKE 298
SPE++ G S DI+ LG++LFEL PFST E+ RT++ +R+ PP K+P E
Sbjct: 197 MSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCE 256
Query: 299 ASFCLWLLHPEPSGRPKMGELLQS 322
+L P P RP+ ++++
Sbjct: 257 YVMVQDMLSPSPMERPEAINIIEN 280
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 87/241 (36%), Gaps = 82/241 (34%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSFNHVSFIEXXXXXXXXXXXHEEGL 141
CLHIF QI E V HS+G++ +++PS F M V
Sbjct: 166 CLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVG------------------- 206
Query: 142 NTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVE 201
D LVTA D E + + AY TH V
Sbjct: 207 ----------------------------DFGLVTAMDQDEEEQTVLTPMPAYATHXGQVG 238
Query: 202 GMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL 261
T Y SPE++ G S DI+ LG++
Sbjct: 239 ---------------------------------TKLYMSPEQIHGNNYSHKVDIFSLGLI 265
Query: 262 LFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
LFEL FST E+ R ++ +R+ P K+P+E +L P P+ RP+ ++++
Sbjct: 266 LFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325
Query: 322 S 322
+
Sbjct: 326 N 326
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +DG+ A+ G +K ++VF+ + ++++ + C S S IA+
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAET--------GEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSS-ADPTLLASGSDDGSVKLWSINQ 692
+ + V++WD + +++ EH +V F++ ++ LLA+GS+D +KLW +NQ
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1114
Query: 691 N 691
+
Sbjct: 1115 D 1115
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
++ +S++ + ++W L E++ H V FS D LLA+G D+G +++W++
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNV 1156
Query: 691 NQAILLLHLVDVSFETKRTT 710
+ LL +S E T
Sbjct: 1157 SDGQLLHSCAPISVEEGTAT 1176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 719
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
S++F +++WD+++ + M H V FS D LLAS S DG+++LW + A
Sbjct: 720 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSA 775
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
IA S + V++W++ + + R H V + FS + L + SDD ++++W
Sbjct: 857 IALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK 913
Query: 691 ---NQAILLLHLVDVSFETKRTTVI 712
N AI+L +DV F+ T V+
Sbjct: 914 VCKNSAIVLKQEIDVVFQENETMVL 938
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 32/144 (22%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 666 IDFSSADPTLLASGSDDGSVKLWS 689
I F +AD L S S+D +++W+
Sbjct: 1009 IQF-TADGKTLISSSEDSVIQVWN 1031
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +DG+ A+ G +K ++VF+ + ++++ + C S S IA+
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAET--------GEKLLDIKAHEDEVLCCAFSSDDSYIAT 681
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSS-ADPTLLASGSDDGSVKLWSINQ 692
+ + V++WD + +++ EH +V F++ ++ LLA+GS+D +KLW +NQ
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1121
Query: 691 N 691
+
Sbjct: 1122 D 1122
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
++ +S++ + ++W L E++ H V FS D LLA+G D+G +++W++
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNV 1163
Query: 691 NQAILLLHLVDVSFETKRTT 710
+ LL +S E T
Sbjct: 1164 SDGQLLHSCAPISVEEGTAT 1183
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 726
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
S++F +++WD+++ + M H V FS D LLAS S DG+++LW + A
Sbjct: 727 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSA 782
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
IA S + V++W++ + + R H V + FS + L + SDD ++++W
Sbjct: 864 IALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK 920
Query: 691 ---NQAILLLHLVDVSFETKRTTVI 712
N AI+L +DV F+ T V+
Sbjct: 921 VCKNSAIVLKQEIDVVFQENETMVL 945
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 32/144 (22%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 666 IDFSSADPTLLASGSDDGSVKLWS 689
I F +AD L S S+D +++W+
Sbjct: 1016 IQF-TADGKTLISSSEDSVIQVWN 1038
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 402
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H VW + FS D T+ AS SDD +VKLW+ N +L
Sbjct: 403 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQLL 460
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 115
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N +L
Sbjct: 116 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLL 173
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDGQT 153
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG 211
Query: 693 AIL 695
+L
Sbjct: 212 QLL 214
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ NR+ S ++ + + ++ IAS
Sbjct: 229 FSPDGQTIASASDDKTVKLW--------NRNGQLLQTLTGHSSSVNGVAFRPDGQT-IAS 279
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N
Sbjct: 280 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN 333
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG 88
Query: 693 AIL 695
+L
Sbjct: 89 QLL 91
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 24 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDGQT 71
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG 129
Query: 693 AIL 695
+L
Sbjct: 130 QLL 132
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDGQT 194
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG 252
Query: 693 AIL 695
+L
Sbjct: 253 QLL 255
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDDQT 440
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG 498
Query: 693 AIL 695
+L
Sbjct: 499 QLL 501
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 238
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H V + F D +AS SDD +VKLW+ N +L
Sbjct: 239 ASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNRNGQLL 296
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F D + A+A +K +K++ + + + H V + S IAS
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 484
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N +L
Sbjct: 485 ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLL 542
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+ G +K ++VF+ + ++E+ + C S IA+
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAET--------GEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSINQ 692
+ + V++W+ +++ EH +V F+ S+ LLA+GS D +KLW +NQ
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSA 671
++ + +++S C + +++ IA + G +++ ++ +++ +H++ VW I F++
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 672 DPTLLASGSDDGSVKLWS--INQAILL 696
+ TL++S SDD +++W+ +++ I L
Sbjct: 1021 EKTLISS-SDDAEIQVWNWQLDKCIFL 1046
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
C S+ ++ +S++ + ++W L E+R H V FS D TLLA+G D+G
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNG 1155
Query: 684 SVKLWSINQAILL 696
+++W+++ LL
Sbjct: 1156 EIRIWNVSNGELL 1168
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F D A V+KK+K++ +++ E + E + + NS +A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--NSMTGELVHTYDEHSEQVNCCHFT----NSSHHLLLAT 724
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
+ + +++WD+++ + M H V FS D LLAS S DG++KLW A
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDKLLASCSADGTLKLWDATSA 781
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW++ + H+ V S D S D T +S S D + K+WS
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH-DATKFSSTSADKTAKIWSF 1120
Query: 691 NQAILLLH 698
+ +L LH
Sbjct: 1121 D-LLLPLH 1127
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-----NQAILL 696
V++W+ + + R H V + FS + L S SDD +++LW N A++L
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS-SDDQTIRLWETKKVCKNSAVML 928
Query: 697 LHLVDVSFETKRTTVI 712
VDV F+ V+
Sbjct: 929 KQEVDVVFQENEVMVL 944
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAGAP-VSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAGAP-VSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC-----------DAIINENRDIHYPVVEMASRSKLSSIC 624
F DGE + A G NK +V+ D+ N++ + +S + S+C
Sbjct: 72 FSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 625 WNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID-FSSADPTLLASGSDDG 683
++ K +A+ + ++++WD+ +++ ++ HE+ ++S+D F S D L SGS D
Sbjct: 131 FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDR 187
Query: 684 SVKLWSINQAILLLHLVDVSFETKRTTV 711
+V++W + L L S E TTV
Sbjct: 188 TVRIWDLRTGQCSLTL---SIEDGVTTV 212
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMRE--------HERRVWSIDFSSADPTLLASGSDDGS 684
IA+ + + V+VWD S + L E + H+ V+S+ F+ D + SGS D S
Sbjct: 222 IAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRS 279
Query: 685 VKLWSINQA 693
VKLW++ A
Sbjct: 280 VKLWNLQNA 288
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS--QI 633
F DG+ A ++ I++++ ENR I M + I Y S ++
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI-----ENRKI-----VMILQGHEQDIYSLDYFPSGDKL 180
Query: 634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
S + + V++WD+ Q + E V ++ S D +A+GS D +V++W
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 694 ILLLHL 699
L+ L
Sbjct: 240 FLVERL 245
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W + +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 696 LLHL 699
L L
Sbjct: 145 LKTL 148
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 184 GQCLKTLID 192
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 209
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 210 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 689 SI 690
++
Sbjct: 268 NL 269
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILL 696
++ L
Sbjct: 224 YSKGKCL 230
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W + +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 696 LLHL 699
L L
Sbjct: 145 LKTL 148
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 184 GQCLKTLID 192
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 209
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 210 --ILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 689 SI 690
++
Sbjct: 268 NL 269
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D +KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWD 223
Query: 690 INQAILL 696
++ L
Sbjct: 224 YSKGKCL 230
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE AA+ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLAASSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 LLHL 699
L L
Sbjct: 145 LKTL 148
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 184 GQCLKTLID 192
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 209
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 210 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 689 SI 690
++
Sbjct: 268 NL 269
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILL 696
++ L
Sbjct: 224 YSKGKCL 230
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 LLHL 699
L L
Sbjct: 148 LKTL 151
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 187 GQCLKTLID 195
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 212
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 213 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 689 SI 690
++
Sbjct: 271 NL 272
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILL 696
++ L
Sbjct: 227 YSKGKCL 233
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 55 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 108 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 696 LLHL 699
L L
Sbjct: 166 LKTL 169
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 204
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 205 GQCLKTLID 213
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 181 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 230
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 231 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 689 SI 690
++
Sbjct: 289 NL 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 244
Query: 690 INQAILL 696
++ L
Sbjct: 245 YSKGKCL 251
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 53 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 106 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 696 LLHL 699
L L
Sbjct: 164 LKTL 167
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 202
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 203 GQCLKTLID 211
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 179 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 228
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 229 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 689 SI 690
++
Sbjct: 287 NL 288
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 242
Query: 690 INQAILL 696
++ L
Sbjct: 243 YSKGKCL 249
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 LLHL 699
L L
Sbjct: 145 LKTL 148
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 184 GQCLKTLID 192
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 209
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 210 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 689 SI 690
++
Sbjct: 268 NL 269
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILL 696
++ L
Sbjct: 224 YSKGKCL 230
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 48 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 101 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 696 LLHL 699
L L
Sbjct: 159 LKTL 162
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 197
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 198 GQCLKTLID 206
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 174 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 223
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 224 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 689 SI 690
++
Sbjct: 282 NL 283
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 237
Query: 690 INQAILL 696
++ L
Sbjct: 238 YSKGKCL 244
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 696 LLHL 699
L L
Sbjct: 145 LKTL 148
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 184 GQCLKTLID 192
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 209
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 210 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 689 SI 690
++
Sbjct: 268 NL 269
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILL 696
++ L
Sbjct: 224 YSKGKCL 230
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 LLHL 699
L L
Sbjct: 148 LKTL 151
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 187 GQCLKTLID 195
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 212
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 213 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 689 SI 690
++
Sbjct: 271 NL 272
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILL 696
++ L
Sbjct: 227 YSKGKCL 233
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 30 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 83 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 696 LLHL 699
L L
Sbjct: 141 LKTL 144
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 179
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 180 GQCLKTLID 188
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 156 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 205
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 206 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 689 SI 690
++
Sbjct: 264 NL 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 219
Query: 690 INQAILL 696
++ L
Sbjct: 220 YSKGKCL 226
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 696 LLHL 699
L L
Sbjct: 142 LKTL 145
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 181 GQCLKTLID 189
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 206
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 207 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 689 SI 690
++
Sbjct: 265 NL 266
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQAILL 696
++ L
Sbjct: 221 YSKGKCL 227
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 32 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 85 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 696 LLHL 699
L L
Sbjct: 143 LKTL 146
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 181
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 182 GQCLKTLID 190
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 158 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 207
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 208 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 689 SI 690
++
Sbjct: 266 NL 267
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 221
Query: 690 INQAILL 696
++ L
Sbjct: 222 YSKGKCL 228
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 36 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 89 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 696 LLHL 699
L L
Sbjct: 147 LKTL 150
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 185
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 186 GQCLKTLID 194
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 162 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 211
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 212 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 689 SI 690
++
Sbjct: 270 NL 271
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 225
Query: 690 INQAILL 696
++ L
Sbjct: 226 YSKGKCL 232
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 27 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 80 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 696 LLHL 699
L L
Sbjct: 138 LKTL 141
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 176
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 177 GQCLKTLID 185
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 153 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 202
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 203 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 689 SI 690
++
Sbjct: 261 NL 262
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 216
Query: 690 INQAILL 696
++ L
Sbjct: 217 YSKGKCL 223
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 696 LLHL 699
L L
Sbjct: 142 LKTL 145
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 181 GQCLKTLID 189
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 206
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 207 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 689 SI 690
++
Sbjct: 265 NL 266
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQAILL 696
++ L
Sbjct: 221 YSKGKCL 227
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F + L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 696 LLHL 699
L L
Sbjct: 148 LKTL 151
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLVD 701
L L+D
Sbjct: 187 GQCLKTLID 195
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 576 FDRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
F+RDG L ++ + +++ +C + ++ + V+ + K
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY---------- 212
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI--DFSSADPTLLASGSDDGSVKLW 688
I ++ + +++WD S+ + L H+ + I +FS + SGS+D V +W
Sbjct: 213 --ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 689 SI 690
++
Sbjct: 271 NL 272
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILL 696
++ L
Sbjct: 227 YSKGKCL 233
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D Y LG++ FE PFSTG E+ + LR + PP
Sbjct: 193 TAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKXKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 83 ECLHIFRQIVEIVYAAHSQGIVVHNVRP-SCFVMSSFN 119
E +FRQI+E + HSQGI+ N++P + F+ S N
Sbjct: 117 EYWRLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRN 154
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VWD++ +++T+++ H V S+ S D +L AS DG +LW + +
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTK 227
Query: 693 A 693
Sbjct: 228 G 228
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 81 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 139
Query: 114 VM 115
++
Sbjct: 140 LI 141
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 243
Query: 298 EASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAA 338
E + LL +P RP E+L++ + + ER A
Sbjct: 244 EKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNERHTA 284
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 201 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 257
Query: 298 EASFCLWLLHPEPSGRPKMGELLQS 322
E + LL +P RP E+L++
Sbjct: 258 EKTLLQKLLSKKPEDRPNTSEILRT 282
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 84 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 142
Query: 114 VM 115
++
Sbjct: 143 LI 144
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 80 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 138
Query: 114 VM 115
++
Sbjct: 139 LI 140
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 576 FDRDGELFAAAGVNKKIKVF----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS 631
F D +A ++ IK++ EC I+E + H V S + ++
Sbjct: 480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-------NTLQP 532
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
I S++++ V+VW++S ++ + + H V ++ S D +L ASG DG V LW +
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591
Query: 692 QAILLLHL 699
+ L L
Sbjct: 592 EGKKLYSL 599
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 53/178 (29%)
Query: 576 FDRDGELFAAAGVNKKIKV-----FEC--------------------DAIINENRDIHYP 610
FD G+L A+ + IK+ FEC D I++ +RD
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 611 VVEMASRSKLSSIC----WNSYIK-----SQIASSNFEGVVQVWDVSRSQVLTEMREHER 661
+ E+ + + + W ++ + IAS + + V+VW V+ + E+REH
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 662 RVWSIDFS------------------SADPT-LLASGSDDGSVKLWSINQAILLLHLV 700
V I ++ S P L SGS D ++K+W ++ + L+ LV
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 577 DRDGELFAAAGVNKKIKVF-----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS 631
++DG L A+ ++ ++V+ EC A + E+R + + A S SSI + ++
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV-VECISWAPESSYSSISEATGSET 301
Query: 632 Q--------IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
+ + S + + +++WDVS L + H+ V + F S +L S +DD
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDK 360
Query: 684 SVKLW 688
++++W
Sbjct: 361 TLRVW 365
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
I S + ++VWD + + + HE V S+DF P ++ +GS D +VK+W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVW 407
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+A+ +G++ +WDV + + ++ ++ HE +W + F ++P L + S+DGS+ W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 227 MKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRV 286
+K+ + T ++ +PE + + +DI+ LG+ EL + GE M +R
Sbjct: 175 IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIEL----AKGEPPNSDMHPMRVLF 230
Query: 287 L-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSEFL 325
L PP L+ F K F L+ +PS RP ELL+ +F+
Sbjct: 231 LIPKNNPPTLVGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFI 275
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMR---EHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ S N + V++WD+ Q L ++ +H+ V + F + + + SDDG+VKLW
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWD 388
Query: 690 INQAILLLHLV 700
+ + +LV
Sbjct: 389 LKTGEFIRNLV 399
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y ++ S ++ +V+VWD L ++ H RV+S+ F D + SGS D S+++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303
Query: 688 WSI 690
W +
Sbjct: 304 WDV 306
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+ S + + ++VWDV + + H+ ++ +L SG+ D +VK+W I
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIK 347
Query: 692 QAILL 696
L
Sbjct: 348 TGQCL 352
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
+ ++I S + + ++VW + L + H VWS S ++ SGS D ++K+
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKV 183
Query: 688 WS 689
W+
Sbjct: 184 WN 185
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQA 693
S+ Q+
Sbjct: 169 SLGQS 173
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL--LASGSDDGSVKLWS 689
+++WD + + H V F+ PTL + SGS+DG++K+W+
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNV---SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQA 693
S+ Q+
Sbjct: 169 SLGQS 173
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL--LASGSDDGSVKLWS 689
+++WD + + H V F+ PTL + SGS+DG++K+W+
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNV---SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
+ DG A +K + ++E D E I V++ S+ + + W+ ++ +AS
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECI--SVLQEHSQD-VKHVIWHPS-EALLAS 170
Query: 636 SNFEGVVQVW-DVSRS-QVLTEMREHERRVWSIDFSSADPTL-LASGSDDGSVKLW 688
S+++ V++W D + + + HE VWS DF + L SGSDD +V++W
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 673 PTLLASGSDDGSVKLWSINQA 693
T+LA+G DDG V WS+ +A
Sbjct: 309 KTILATGGDDGIVNFWSLEKA 329
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQA 693
S+ Q+
Sbjct: 169 SLGQS 173
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL--LASGSDDGSVKLWS 689
+++WD + + H V F+ PTL + SGS+DG++K+W+
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNV---SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQA 693
S+ Q+
Sbjct: 169 SLGQS 173
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL--LASGSDDGSVKLWS 689
+++WD + + H V F+ PTL + SGS+DG++K+W+
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNV---SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 180 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 238
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 239 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 277
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 176 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 234
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 235 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 273
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 187 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 245
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 246 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 284
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 185 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 243
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 244 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 282
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ F +K+ WYA PE L + S AS
Sbjct: 141 ATRNILVENENRVKIGDFGL-TKVLPQDKEFFKVKEPGESPIFWYA-PESLTESKFSVAS 198
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 199 DVWSFGVVLYELF 211
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 186 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 245
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 246 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 281
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 288
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 289 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 327
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 365
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 366 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 404
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 196 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 255
Query: 289 P 289
P
Sbjct: 256 P 256
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ + +K+ WYA PE L + S AS
Sbjct: 142 ATRNILVENENRVKIGDFGL-TKVLPQDKEYYKVKEPGESPIFWYA-PESLTESKFSVAS 199
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 200 DVWSFGVVLYELF 212
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 182 WYA-PESLTESKFSVASDVWSFGVVLYELF 210
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ L K
Sbjct: 186 YIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSK 245
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ S C L+ P+ R
Sbjct: 246 --EAVSICKGLMTKHPAKR 262
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 188 WYA-PESLTESKFSVASDVWSFGVVLYELF 216
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 214 WYA-PESLTESKFSVASDVWSFGVVLYELF 242
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 190 WYA-PESLTESKFSVASDVWSFGVVLYELF 218
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 181 WYA-PESLTESKFSVASDVWSFGVVLYELF 209
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 189 WYA-PESLTESKFSVASDVWSFGVVLYELF 217
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 187 WYA-PESLTESKFSVASDVWSFGVVLYELF 215
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 231 LLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL 287
+L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 174 VLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYS 233
Query: 288 PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 234 IPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 270
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 195 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 254
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 255 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 294
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 187 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 246
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 247 --EAVAICKGLMTKHPGKR 263
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 256
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 257 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 296
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 246
Query: 693 AILLLHL 699
L L
Sbjct: 247 GKHLYTL 253
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 200 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 259
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 260 AHILDQAPKARKF 272
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN 133
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 223
Query: 693 AILLLHL 699
L L
Sbjct: 224 GKHLYTL 230
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 508 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 567
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 568 --EAVAICKGLMTKHPGKR 584
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 181 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 240
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 241 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 276
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF 638
+G L +A+ + I +++ +A E+R I + + + + W+ +S S
Sbjct: 198 NGYLLSASD-DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 256
Query: 639 EGVVQVWDV---SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ + +WD + S+ + H V + F+ +LA+GS D +V LW + L
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 696 LLHLVDVSFETKRTTVI 712
LH SFE+ + +
Sbjct: 317 KLH----SFESHKDEIF 329
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 250 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T +Y SPE P + SDI+ LG +L+EL F G K + + P L
Sbjct: 188 TPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSL 247
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+ S L P RP + +L+ F+
Sbjct: 248 HYSYDLR-SLVSQLFKRNPRDRPSVNSILEKGFI 280
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF 638
+G L +A+ + I +++ +A E+R I + + + + W+ +S S
Sbjct: 196 NGYLLSASD-DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 254
Query: 639 EGVVQVWDV---SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ + +WD + S+ + H V + F+ +LA+GS D +V LW + L
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 696 LLHLVDVSFETKRTTVI 712
LH SFE+ + +
Sbjct: 315 KLH----SFESHKDEIF 327
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 248 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF 638
+G L +A+ + I +++ +A E+R I + + + + W+ +S S
Sbjct: 194 NGYLLSASD-DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252
Query: 639 EGVVQVWDV---SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ + +WD + S+ + H V + F+ +LA+GS D +V LW + L
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 696 LLHLVDVSFETKRTTVI 712
LH SFE+ + +
Sbjct: 313 KLH----SFESHKDEIF 325
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 246 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G A G++ K V+ NEN V M + S C + QI +++ +
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGD 175
Query: 640 GVVQVWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSI 690
G +WDV Q+L H V +D + S SG D +W +
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ VWDV + ++ + HE RV ++ S D T SGS D ++++W+
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRV-SPDGTAFCSGSWDHTLRVWA 354
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSI 690
VWD+ Q + HE V S+ + S D ASGSDD + +L+ +
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDL 269
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L +A+ + I +++ A+ E + + + + + + W+ +S S +
Sbjct: 191 GHLLSASD-DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADD 249
Query: 640 GVVQVWDV---SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL 696
+ +WD + S+ + H V + F+ +LA+GS D +V LW + L
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 697 LHLVDVSFETKRTTVI 712
LH SFE+ + +
Sbjct: 310 LH----SFESHKDEIF 321
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 331 TILASSGTDRRLNVWDLSK 349
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSK-LSSICWNSYIKSQ-- 632
F +G+ A G++ +F + +RD + PV + + K +S C Y+ Q
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSS--QADRDGNMPVSRVLTGHKGYASSC--QYVPDQET 171
Query: 633 -IASSNFEGVVQVWDVSRSQVLTEMRE-----HERRVWSIDFSSADPTLLASGSDDGSVK 686
+ + + + +WDV+ Q ++ H V S+ +S + + SGS D +V+
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 687 LWSI 690
LW +
Sbjct: 232 LWDL 235
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+EL PF+ +K
Sbjct: 165 ILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y +PE L G+ A+D++ LG+ + E+ C LR LPP+
Sbjct: 222 YMAPELLQGS-YGTAADVFSLGLTILEVACNMEL-PHGGEGWQQLRQGYLPPEFTAGLSS 279
Query: 298 EA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
E S + +L P+P R LL L +P
Sbjct: 280 ELRSVLVMMLEPDPKLRATAEALLALPVLRQP 311
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
+++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKG 193
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ S +++ + VWDV++ + L + H R++S + + S S D ++++W +
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLEN 341
Query: 693 AILLLHL 699
L+ L
Sbjct: 342 GELMYTL 348
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+EL PF+ +K
Sbjct: 165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+EL PF+ +K
Sbjct: 165 ILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D +++ SGS D ++K+W+I A LL H
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 155 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 207
Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRV--LPPQL-----LLKFPKEASFCLWLLH 307
+G+ L E+ P +G L + V PP+L L+F + CL
Sbjct: 208 MGLSLVEMAVGRYPIGSGSGSMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLI--- 264
Query: 308 PEPSGRPKMGELLQSEFLNEPRDSMEEREAA 338
P+ R + +L+ F+ R EE + A
Sbjct: 265 KNPAERADLKQLMVHAFIK--RSDAEEVDFA 293
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 41 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D +++ SGS D ++K+W+I A LL H
Sbjct: 101 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 141
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 219
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D +++ SGS D ++K+W+I A LL H
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D +++ SGS D ++K+W+I A LL H
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKG 193
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+ S +++ + VWDV++ + L + H R++S + + S S D ++++W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDL 339
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D +++ SGS D ++K+W+I A LL H
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 331
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHR 285
K+ L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R
Sbjct: 197 KRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDS 256
Query: 286 VLPPQL--LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLN 326
LPP++ L K F +L EPS R ELL FL
Sbjct: 257 -LPPRVKDLHKVSSVLRGFLDLMLVREPSQRATAQELLGHPFLK 299
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQAILLLHL 699
L S D + +W + +L L
Sbjct: 147 LLSAGXDNVILVWDVGTGAAVLTL 170
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 610 PVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE--HERRVWSI 666
PV+ + +K + + W+ ++ + S+ + V+ VWDV + + H ++S+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 667 DFSSADPTLLASGSDDGSVKL 687
D+S D L+ + D V++
Sbjct: 183 DWSR-DGALICTSCRDKRVRV 202
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRT 278
T Y +PE LA P S A D + +GV+ + L C + E+T +
Sbjct: 170 TPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES 213
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS 270
++ T Y SPE+ G +DIY +G++L+E+ PF+
Sbjct: 172 VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y + S + + +++WD+ L + HE V I F D + SG+ DG +K+
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKV 360
Query: 688 WSINQAI 694
W + A+
Sbjct: 361 WDLVAAL 367
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S++ + ++VW+ S + + + H+R + + + L+ SGS D +++LW I
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI 323
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y +I S + +++WD + + + H V + + D ++ +GS D +V++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRV 197
Query: 688 WSINQAILLLHLV 700
W +N +L L+
Sbjct: 198 WDVNTGEMLNTLI 210
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y + I + + + V+VWDV+ ++L + H V + F++ ++ + S D S+ +
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAV 237
Query: 688 WSI 690
W +
Sbjct: 238 WDM 240
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 109 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 161
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 162 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 212
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 213 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272
Query: 324 FL 325
F+
Sbjct: 273 FI 274
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 114 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 166
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 167 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 217
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 218 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 277
Query: 324 FL 325
F+
Sbjct: 278 FI 279
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ---AILLLH 698
+ V S+D ++ SGS D ++K+W+I A LL H
Sbjct: 107 KSDVXSVDIDKKASXII-SGSRDKTIKVWTIKGQCLATLLGH 147
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
I S+ + V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIXLWNL 225
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++E F + T Y SPE L G S SDI+
Sbjct: 139 ILVNSRGEIKLCDFGVSGQLIDEMANEF-------VGTRSYMSPERLQGTHYSVQSDIWS 191
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 192 MGLSLVEM 199
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQAILLLHL 699
L S D + +W + +L L
Sbjct: 147 LLSAGCDNVILVWDVGTGAAVLTL 170
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 610 PVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE--HERRVWSI 666
PV+ + +K + + W+ ++ + S+ + V+ VWDV + + H ++S+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 667 DFSSADPTLLASGSDDGSVKL 687
D+S D L+ + D V++
Sbjct: 183 DWSR-DGALICTSCRDKRVRV 202
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAI 694
+ +
Sbjct: 214 REGM 217
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAI 694
+ +
Sbjct: 214 REGM 217
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAI 694
+ +
Sbjct: 214 REGM 217
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPFS--TGEEKTRTMSSLRHRVLPPQL 291
+++PE S SD++ G+L++E+F P+ T E +S HR+ P L
Sbjct: 171 WSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQ-GHRLYRPHL 229
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
+ + W H P RP +LL S
Sbjct: 230 ASDTIYQIMYSCW--HELPEKRPTFQQLLSS 258
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 185 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 219
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAI 694
+ +
Sbjct: 214 REGM 217
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 224
Query: 691 NQAI 694
+ +
Sbjct: 225 REGM 228
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 186 IVGTTAYXAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 233
Query: 292 LL 293
LL
Sbjct: 234 LL 235
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 189 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 236
Query: 292 LL 293
LL
Sbjct: 237 LL 238
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 29/107 (27%)
Query: 30 VELTHGDHLRNQGGL-----SGVCE--------------NEAAIDPFVHAIEWGDVSLRQ 70
+EL HG HL ++ + +G C NE AI+ +H R+
Sbjct: 107 MELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHG-------FRE 159
Query: 71 WLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
LD +R + +I RQI ++ H+QGI +++P F+ S+
Sbjct: 160 SLDFVQREKLIS---NIMRQIFSALHYLHNQGICHRDIKPENFLFST 203
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+Q S + + ++VWD+++ VL+ R H +V + S ++ S S+D + LW
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLME-- 234
P+N L A C + +G L + + N + + + E + F Q +L +
Sbjct: 137 PSNILLNAECHVKVADFG----LSRSFVNIRRVTNNIPL-SINENTENFDDDQPILTDYV 191
Query: 235 -TNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSL 282
T WY +PE L G+ + D++ LG +L E+ C P G + TM+ L
Sbjct: 192 ATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPG---SSTMNQL 240
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L +A+ + + +++ +A E + + + + + + W+ +S S +
Sbjct: 193 GHLLSASD-DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 640 GVVQVWDVSRSQVLTE----MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ +WD +RS ++ + H V + F+ +LA+GS D +V LW + L
Sbjct: 252 QKLMIWD-TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 696 LLHLVDVSFETKRTTVI 712
LH +FE+ + +
Sbjct: 311 KLH----TFESHKDEIF 323
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L +A+ + + +++ +A E + + + + + + W+ +S S +
Sbjct: 193 GHLLSASD-DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 640 GVVQVWDVSRSQVLTE----MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ +WD +RS ++ + H V + F+ +LA+GS D +V LW + L
Sbjct: 252 QKLXIWD-TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 696 LLHLVDVSFETKRTTVI 712
LH +FE+ + +
Sbjct: 311 KLH----TFESHKDEIF 323
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPFSTGEEKTRTMSSLRH--RVLPPQL 291
+ +PE + S SD++ GVLL+E+F P+ + S LR R+ P+
Sbjct: 267 WMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPE- 325
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
P+ L H +P RP+ EL++
Sbjct: 326 -YSTPEIYQIMLDCWHRDPKERPRFAELVE 354
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS---S 636
+FA+AG + +++ A E + Y + +LS + W+ +++A+ S
Sbjct: 178 AHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS 236
Query: 637 NFEGVVQVWDV--SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+ + + +WD+ + + + T + H++ + S+D+ D LL S D +V LW
Sbjct: 237 DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 606 DIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ----VLTEMREHER 661
D P+ + SK + + W S+ IA + G ++++ + + + H
Sbjct: 56 DSEKPIASLQVDSKFNDLDW-SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114
Query: 662 RVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V ++ F++ +LASG ++G + +W +N+
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFEL---FCPFSTGEEKT 276
+ +PE L A DI+ LGVLL+ + + PF+ G + T
Sbjct: 186 FVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT 227
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 70 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 126
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 127 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 186
Query: 696 L 696
+
Sbjct: 187 V 187
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 227
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 228 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 256
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 170 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 228
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 229 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 257
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L A +K + V+E ++E + V + + + W+ + +AS++++
Sbjct: 117 GNLLATCSRDKSVWVWE----VDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYD 171
Query: 640 GVVQVWDVSRSQ--VLTEMREHERRVWSIDFSSADPT--LLASGSDDGSVKLW 688
V+++ + HE VWS+ F DP+ LAS SDD +V++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAF---DPSGQRLASCSDDRTVRIW 221
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 34 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 90
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150
Query: 696 L 696
+
Sbjct: 151 V 151
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 33 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 696 L 696
+
Sbjct: 150 V 150
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 29 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 85
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 86 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 145
Query: 696 L 696
+
Sbjct: 146 V 146
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+Q S + V+VWD+S+ VL H V + T+ S +DG + LW
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 33 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 696 L 696
+
Sbjct: 150 V 150
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 183 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 211
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
+ D +F ++ +K +KV++ + + + D+ + E +S + S +A
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTL--QTADV-FNFEETVYSHHMSPV---STKHCLVAV 161
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
VQ+ D+ ++ H + + ++ +S +LA+ S D VKLW + +A
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 696 LLHLVD 701
L +D
Sbjct: 222 CLITLD 227
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 595 FECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT 654
+ C A+ + RD +P V R + ++ W + SS+F+ ++VWD + Q
Sbjct: 82 YTCKAVCSIGRD--HPDVH---RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-A 135
Query: 655 EMREHERRVWSIDFS--SADPTLLASGSDDGSVKL 687
++ E V+S S S L+A G+ V+L
Sbjct: 136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 163 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 215
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 216 MGLSLVEM 223
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 198 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 250
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 251 MGLSLVEM 258
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 87 IFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIE 125
+FRQIV V HSQG +++P + ++ + I+
Sbjct: 113 VFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLID 151
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
+ N E ++ + + T WY +PE L A S A D++ G +
Sbjct: 166 AAD--------NSEPTGQQS-----GMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLW 688
V +W
Sbjct: 79 VLIW 82
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 196 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 224
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 184 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 212
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 180 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 208
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y +PE L G S SDI+
Sbjct: 146 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMAPERLQGTHYSVQSDIWS 198
Query: 258 LGVLLFEL 265
+G+ L EL
Sbjct: 199 MGLSLVEL 206
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEE 274
T Y SPE L S +SD++ LG ++++L PF G E
Sbjct: 197 TAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNE 239
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 132 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 163
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSL--RHRVLPPQLLLKF 295
+ +PE + + S SD++ GVLL+EL TGE R + L + V +L L
Sbjct: 180 WMAPEVIRASMFSKGSDVWSYGVLLWELL----TGEVPFRGIDGLAVAYGVAMNKLALPI 235
Query: 296 PKE-----ASFCLWLLHPEPSGRPKMGELL 320
P A +P+P RP +L
Sbjct: 236 PSTCPEPFAKLMEDCWNPDPHSRPSFTNIL 265
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
++ E Q M + + T WY +PE L A S A D++ G +
Sbjct: 166 AADNS-----------EPTGQQSGMTE--YVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
++ E Q M + + T WY +PE L A S A D++ G +
Sbjct: 166 AADNS-----------EPTGQQSGMTE--XVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
S++ +G +++W H + + S + D + S S DGSV+LWS+ Q
Sbjct: 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI--SCSMDGSVRLWSLKQNT 321
Query: 695 LL-LHLVD 701
LL L +VD
Sbjct: 322 LLALSIVD 329
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H RQI+E + H I+ +V+P C +++S
Sbjct: 134 HYMRQILEALRYCHDNNIIHRDVKPHCVLLAS 165
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80
Query: 685 VKLW 688
V +W
Sbjct: 81 VLIW 84
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H RQI+E + H I+ +V+P C +++S
Sbjct: 136 HYMRQILEALRYCHDNNIIHRDVKPHCVLLAS 167
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 212 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFXRRLKE-GTRMRAPD 270
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 271 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 299
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 109 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 140
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 109 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 140
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
VLVE + KI D + + +E K+ +K WYA PE L + ASD++
Sbjct: 157 VLVESEHQVKIGDFGL-TKAIETDKEXXTVKDDRDSPVFWYA-PECLMQSKFYIASDVWS 214
Query: 258 LGVLLFELF 266
GV L EL
Sbjct: 215 FGVTLHELL 223
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
H +QI+E + HS GIV N++P +++S
Sbjct: 108 HCIQQILESIAYCHSNGIVHRNLKPENLLLAS 139
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
VLVE + KI D + + +E K+ +K WYA PE L + ASD++
Sbjct: 145 VLVESEHQVKIGDFGL-TKAIETDKEXXTVKDDRDSPVFWYA-PECLMQSKFYIASDVWS 202
Query: 258 LGVLLFELF 266
GV L EL
Sbjct: 203 FGVTLHELL 211
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 259 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 317
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 318 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 346
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 266 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 324
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 325 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 353
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 216 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 274
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 275 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 268 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 326
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 327 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 355
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSADP---TLLASGSDD 682
Y ++A+ + + +++++V +++ + HE VW +D+ A P T+LAS S D
Sbjct: 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILASCSYD 76
Query: 683 GSVKLW 688
G V +W
Sbjct: 77 GKVMIW 82
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 261 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 319
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 320 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 348
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 212 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 270
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 271 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 299
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPF---STGEEKTRTMSSLRHRVLPPQ 290
+ +PE + + SD++ GVLL+E+F P+ EE R + R+ P
Sbjct: 207 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE-GTRMRAPD 265
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
+ W H EPS RP EL++
Sbjct: 266 YTTPEMYQTMLDCW--HGEPSQRPTFSELVE 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,510,997
Number of Sequences: 62578
Number of extensions: 766349
Number of successful extensions: 2779
Number of sequences better than 100.0: 238
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 2282
Number of HSP's gapped (non-prelim): 500
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)