Your job contains 1 sequence.
>005149
MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSE
ERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSV
LEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIG
KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLN
GPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVD
PLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSG
QRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGG
VGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSS
LSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGL
ILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAA
NSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRR
NIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005149
(712 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081885 - symbol:AT3G51620 "AT3G51620" species... 823 5.9e-118 2
TAIR|locus:2078426 - symbol:AT3G56320 species:3702 "Arabi... 854 4.3e-94 2
TAIR|locus:2061868 - symbol:AT2G40520 "AT2G40520" species... 734 3.5e-78 3
TAIR|locus:2076795 - symbol:AT3G61690 species:3702 "Arabi... 642 5.3e-71 3
TAIR|locus:2063937 - symbol:HESO1 "HEN1 suppressor 1" spe... 126 3.0e-06 2
SGD|S000005243 - symbol:TRF5 "Non-canonical poly(A) polym... 130 9.1e-05 1
POMBASE|SPAC12G12.13c - symbol:cid14 "poly(A) polymerase ... 129 0.00013 1
POMBASE|SPCC663.12 - symbol:cid12 "poly(A) polymerase Cid... 123 0.00018 1
>TAIR|locus:2081885 [details] [associations]
symbol:AT3G51620 "AT3G51620" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 GO:GO:0016740 IPI:IPI00542850
RefSeq:NP_850678.2 UniGene:At.660 ProteinModelPortal:F4J4G2
PRIDE:F4J4G2 EnsemblPlants:AT3G51620.2 GeneID:824325
KEGG:ath:AT3G51620 OMA:VETPENG PhylomeDB:F4J4G2 Uniprot:F4J4G2
Length = 829
Score = 823 (294.8 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
Identities = 189/352 (53%), Positives = 228/352 (64%)
Query: 170 CFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSK 229
C+ E R++G H LI + E+ +L H S+ VLYKFLDYFSK
Sbjct: 191 CYYES--RILGAFHG------LISTYAL-ETLVLYIFHLFHSSLNGPLAVLYKFLDYFSK 241
Query: 230 FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR 289
FDWDSYCISLNGPV +SSLP++VVETPEN G DLLL+SEFLKEC+E +SVPSRGF+TN R
Sbjct: 242 FDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPR 301
Query: 290 SFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKF 349
F KHLNIVDPLKE NNLGRSVSKGNFYRIRSAFTYGARKLG + Q +E+++ ELRKF
Sbjct: 302 GFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKF 361
Query: 350 FSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSS-GITEN 408
FSN L RHGSGQRPDV D +P RYN + ++ + +E Q + ESE +SS G T N
Sbjct: 362 FSNMLLRHGSGQRPDVHDAIPFLRYNRY--NAILPASNHFQEGQVVNESESSSSSGATGN 419
Query: 409 CRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLN 468
R D E L GV +G + S P + +VSE R SGDAKDLAT +
Sbjct: 420 GRHDQEDSLDAGVSIPSTTGPDLS-----GSPGETV--PSVSEERFSGDAKDLATLRIQK 472
Query: 469 LVISNETSKCSSLSGEESKAR-HAPHLYFSSSTMGNGEIRNGNSEWKQQLNS 519
L IS++ K LS +ES + + H F+ M NGE+ NGN KQQ NS
Sbjct: 473 LEISDDAMKSPCLSDKESDSPLNGKHHSFNQ--MRNGEVLNGNGVGKQQENS 522
Score = 748 (268.4 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 154/209 (73%), Positives = 171/209 (81%)
Query: 37 EYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPD 96
E W R EEAT+ II QV PT+VSE+RR+ VI YVQ+LIR LGCEV FGSVPLKTYLPD
Sbjct: 32 ELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPD 91
Query: 97 GDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVV 156
GDIDLTAFGGL EE LA V +VLERE+ N +++FVVKD QLIRAEVKLVKCLVQNIVV
Sbjct: 92 GDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVV 151
Query: 157 DISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALE 216
DISFNQ+GG+ TLCFLE++D LIGKDHLFKRSIILIKAWCYYESRILGA HGLISTYALE
Sbjct: 152 DISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALE 211
Query: 217 TLVLYKFLDYFSKFDWDSYCISLNGPVRI 245
TLVLY F + S SLNGP+ +
Sbjct: 212 TLVLYIFHLFHS---------SLNGPLAV 231
Score = 359 (131.4 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
Identities = 71/157 (45%), Positives = 96/157 (61%)
Query: 551 LDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDY 610
+ +N + V P S +PW E+ + YSG+ S G+P N LSDLSGDY
Sbjct: 533 IHINENENEHVGYEDLP-FASAVPWPQEDMHLHYSGHCVS----GTP---NMLSDLSGDY 584
Query: 611 ESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANG 670
ES SL WW+++ N SP+SP L Q + NSW++M+ +LPFRRN ++ANG
Sbjct: 585 ESQLNSLRFGRWWFDYVQNGPMSPLSPPGLPQLPNNNSWEVMRHALPFRRNAPTPVNANG 644
Query: 671 AVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPN 707
VPR +F+ + P M+PG FG+EE+PK RGTGTYFPN
Sbjct: 645 VVPRQVFFHVNPQMIPGPGFGIEELPKPRGTGTYFPN 681
>TAIR|locus:2078426 [details] [associations]
symbol:AT3G56320 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA;ISS]
InterPro:IPR002934 Pfam:PF01909 EMBL:CP002686 GO:GO:0016779
HOGENOM:HOG000084944 ProtClustDB:CLSN2680151 EMBL:BT008327
EMBL:AK228086 IPI:IPI00522650 RefSeq:NP_191191.2 UniGene:At.23883
UniGene:At.71191 ProteinModelPortal:Q7Y227 IntAct:Q7Y227
PaxDb:Q7Y227 PRIDE:Q7Y227 EnsemblPlants:AT3G56320.1 GeneID:824799
KEGG:ath:AT3G56320 TAIR:At3g56320 eggNOG:NOG311156
InParanoid:Q7Y227 OMA:ERESEFH PhylomeDB:Q7Y227
Genevestigator:Q7Y227 Uniprot:Q7Y227
Length = 603
Score = 854 (305.7 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 181/353 (51%), Positives = 233/353 (66%)
Query: 34 IGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTY 93
I A+ W AEE I+ +QP +VS+ R +IDYV+ LI ++ G EVF FGSVPLKTY
Sbjct: 35 IDADSWMIAEERAHEILCTIQPALVSDRSRNEIIDYVRTLIMSHEGIEVFSFGSVPLKTY 94
Query: 94 LPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQN 153
LPDGDIDLT N+++ +CS L+ E++ +EF D Q I A+VK++KC ++N
Sbjct: 95 LPDGDIDLTVLTKQNMDDDFYGQLCSRLQNEERE--SEFHATDVQFIPAQVKVIKCNIRN 152
Query: 154 IVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTY 213
I VDISFNQ GL LCFLEQVD+L G+DHLFKRSIIL+KAWCYYESRILGA+ GLISTY
Sbjct: 153 IAVDISFNQTAGLCALCFLEQVDQLFGRDHLFKRSIILVKAWCYYESRILGANTGLISTY 212
Query: 214 ALETLVLYKFLDYFSK--------FDWDSYCISL---NGPVRISSLPEVVVETPE----- 257
AL LVLY + S + + Y S N + ++ P + PE
Sbjct: 213 ALAVLVLYIINLFHSSLSGPLAVLYKFLDYYGSFDWNNYCISVNG-PVPISSLPELTAAS 271
Query: 258 -NSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGN 316
+G +LLL +FL+ CVE +S P++ D+N FP KHLNIVDPLK +NNLG+SV++GN
Sbjct: 272 PENGHELLLDEKFLRNCVELYSAPTKAVDSNGLEFPIKHLNIVDPLKYSNNLGKSVTQGN 331
Query: 317 FYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPV 369
RIR AFT GARKL +LS P +++ L KFF N+L+R+G GQR DV DPV
Sbjct: 332 VQRIRHAFTLGARKLRDVLSLPGDTMGWRLEKFFRNSLERNGKGQRQDVNDPV 384
Score = 102 (41.0 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 42/147 (28%), Positives = 66/147 (44%)
Query: 572 TIPWSTEEF--NFSYSGYHASPRTVGSPRAA-----NSLSDLSGDYESHQISLNHVWWWY 624
T+ W E+F N + V P A + LS+LSGD++S L + ++
Sbjct: 356 TMGWRLEKFFRNSLERNGKGQRQDVNDPVTAFGTGRSELSELSGDFDSSFGRLVYGQMYH 415
Query: 625 EHALNSS----YSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPM 680
H+L + Y P+S L + WD+++ + +R+N S N + F P+
Sbjct: 416 GHSLPGTFQHGYIPVSSHL-------SGWDIVRHLVTYRKNEFHLRSLNVSTSMQPF-PL 467
Query: 681 TPPMLPGASFGMEEMPKHRGTGTYFPN 707
LP G + M K RGTGTY P+
Sbjct: 468 HS--LPN---GCQNMRKTRGTGTYIPD 489
Score = 37 (18.1 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 471 ISNE-TSKCSSLSGEES 486
I N+ S C +LSGE S
Sbjct: 519 IDNDGASSCCNLSGEVS 535
>TAIR|locus:2061868 [details] [associations]
symbol:AT2G40520 "AT2G40520" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA;ISS]
InterPro:IPR002934 Pfam:PF01909 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016779 EMBL:AY924760
IPI:IPI00525074 RefSeq:NP_001078031.1 RefSeq:NP_001118485.1
RefSeq:NP_001118486.1 RefSeq:NP_850331.1 UniGene:At.37036
UniGene:At.68912 ProteinModelPortal:Q5BPR8 PRIDE:Q5BPR8
EnsemblPlants:AT2G40520.1 EnsemblPlants:AT2G40520.2
EnsemblPlants:AT2G40520.3 EnsemblPlants:AT2G40520.4 GeneID:818647
KEGG:ath:AT2G40520 TAIR:At2g40520 HOGENOM:HOG000084944
InParanoid:Q5BPR8 OMA:EKFFREC PhylomeDB:Q5BPR8
ProtClustDB:CLSN2680151 Genevestigator:Q5BPR8 Uniprot:Q5BPR8
Length = 502
Score = 734 (263.4 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
Identities = 161/352 (45%), Positives = 222/352 (63%)
Query: 32 TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLK 91
T I AE W AE Q I+ +QP ++E R +I +Q L+ LG EV+ FGS+PLK
Sbjct: 26 TPIEAEVWLIAEARAQEILCAIQPNYLAERSRNKIISNLQTLLWERLGIEVYLFGSMPLK 85
Query: 92 TYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLV 151
TYLPDGDIDLT EE A VC VLE E N ++ V Q ++A+VK++KC +
Sbjct: 86 TYLPDGDIDLTVLTHHASEEDCARAVCCVLEAEMGN--SDLQVTGVQYVQAKVKVIKCSI 143
Query: 152 QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLIS 211
+++ DISFNQL GL LCFLEQVD+ G+DHLFK+SIIL+KAWC+YESRILGA+ GLIS
Sbjct: 144 RDVAFDISFNQLAGLGALCFLEQVDKAFGRDHLFKKSIILVKAWCFYESRILGANSGLIS 203
Query: 212 TYALETLVLYKF-LDYFSK-------FDWDSYCISL---NGPVRISSLPEVVVETP---E 257
TYAL LVL + Y S + + +Y S N V ++ P + P E
Sbjct: 204 TYALAILVLNIVNMSYSSLSGPLAVLYKFINYYGSFDWKNYCVTVTG-PVPISSLPDITE 262
Query: 258 NSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNF 317
++ L +F +EC+E +S + + + + FP K+ NI+DPLK +NNLGRSV+KGN
Sbjct: 263 TGNHEVFLDEKFFRECMELYSGETGVVEASRKYFPVKYYNILDPLKHSNNLGRSVTKGNM 322
Query: 318 YRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPV 369
R+R+ F G +KL +L+ P E++ +L KFF+ +L+R+G GQR DV++PV
Sbjct: 323 VRLRNCFMLGVQKLRDVLTLPGENVGWKLEKFFNVSLERNGKGQRQDVEEPV 374
Score = 44 (20.5 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 600 ANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSP 634
A S L GD++ ++ +L + W++ +L++ P
Sbjct: 381 AADYSQLKGDFDRYRNNLIYGKWFHGESLHNWLPP 415
Score = 40 (19.1 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 686 PGASFGMEEMPKHR---GTGTYFP 706
P + +++ P +R GTGTY P
Sbjct: 444 PTSMPNIKQSPNNRRSNGTGTYIP 467
>TAIR|locus:2076795 [details] [associations]
symbol:AT3G61690 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR002934 Pfam:PF01909 EMBL:CP002686 GO:GO:0016779
IPI:IPI00523694 RefSeq:NP_191728.2 UniGene:At.21960
ProteinModelPortal:F4JFF2 PRIDE:F4JFF2 EnsemblPlants:AT3G61690.1
GeneID:825342 KEGG:ath:AT3G61690 OMA:ESSWDGS Uniprot:F4JFF2
Length = 1303
Score = 642 (231.1 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 134/233 (57%), Positives = 167/233 (71%)
Query: 1 MGDLRDWSPEPNGAVFGERXXXXXXXXXXNQTA-IGAEYWQRAEEATQGIIAQVQPTVVS 59
MG+ W+ P G + T + AE W +AE+ T +IA +QP S
Sbjct: 1 MGEHESWAASPPSPS-GLHPNGLLPGKAASVTRPLDAERWAKAEDRTAKLIACIQPNPPS 59
Query: 60 EERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG-LNVEEALANDV 117
E+RR AV YV+RLI + ++F FGSVPLKTYLPDGDIDLTAF N++++ AN V
Sbjct: 60 EDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKTYLPDGDIDLTAFSANQNLKDSWANLV 119
Query: 118 CSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDR 177
+LE+E++N+ AEF VK+ Q I+AEVK++KCLV+NIVVDISFNQ+GGL TLCFLE+VD
Sbjct: 120 RDMLEKEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQIGGLCTLCFLEEVDH 179
Query: 178 LIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKF 230
I ++HLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLY F + + F
Sbjct: 180 YINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFYLFNNSF 232
Score = 435 (158.2 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 88/195 (45%), Positives = 126/195 (64%)
Query: 170 CFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSK 229
C+ E R++G H LI + E+ +L + ++++ VLY+FL++FSK
Sbjct: 198 CYYES--RILGAHHG------LISTYAL-ETLVLYIFYLFNNSFSGPLEVLYRFLEFFSK 248
Query: 230 FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR 289
FDW ++C+SL GPV +SSLP+V E P G+L +S F + C ++V + +
Sbjct: 249 FDWQNFCLSLWGPVPVSSLPDVTAEPPRRDVGELRVSEAFYRACSRVYAVNIAPQEIQGQ 308
Query: 290 SFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKF 349
F KH N++DPL+ENNNLGRSVSKGNF+RIRSAFT GA+KL +L P+E+L E+ +F
Sbjct: 309 PFVSKHFNVIDPLRENNNLGRSVSKGNFFRIRSAFTLGAKKLTRLLECPKENLIHEVNQF 368
Query: 350 FSNTLDRHGSGQRPD 364
F NT +RHGSG+RPD
Sbjct: 369 FMNTWERHGSGRRPD 383
Score = 94 (38.1 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 61/238 (25%), Positives = 94/238 (39%)
Query: 482 SGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLI 541
SG ES AP + M E+ N + +G V +LP + + G
Sbjct: 895 SGSESTVSLAP--FILGHGMQQNEVDNSGYTFYP---TGPPVPIVA--MLPMYNYQAG-- 945
Query: 542 LLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAAN 601
+ L +H VE NH P ++ S + S R S
Sbjct: 946 --GNATSDALASHHSVDEGVE-NHEPCKSFDSSRGLDQSEIVVSSH--STRMGSSAEQVE 1000
Query: 602 SLSD-LSGDYESHQISLNHVWWWYEHALNSSYSPM---SPQLL--SQFQSKNSWDLMQRS 655
+D L+GD+ SH +L + NS + P+ +P ++ + Q + WD R
Sbjct: 1001 RKNDILNGDFISHWQNLQYG----RSCQNSQHPPVLYPAPVVVPPAYLQGRLPWDGPGRP 1056
Query: 656 LPFRRNIIPQMSANGA--VPRPLFYPMT--PPML-PGASFGMEEMPKHR-GTGTYFPN 707
L + N + Q+ G VP P++ PP + P + E P++R GTGTYFPN
Sbjct: 1057 LAYT-NAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYA---NETPRYRSGTGTYFPN 1110
Score = 59 (25.8 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 35/143 (24%), Positives = 56/143 (39%)
Query: 558 SSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISL 617
S+ V+S SL S T YS +S R SP++ +S +D+S S+ +
Sbjct: 529 STRVDSIRKKSLES----ETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVNSYYDEV 584
Query: 618 NHVWWWYEHALNSSYSPMSPQ----LLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVP 673
V ++N +S Q L++ S PF N + G +P
Sbjct: 585 GSV------SVNEDFSVAGEQEEQDLVNSMTSVTGQGF-NGHFPFPFNF-----STGHLP 632
Query: 674 RPLFYPMTPPMLPGASFGMEEMP 696
+P+TP +L +G MP
Sbjct: 633 ----FPITPSILASMGYGQRNMP 651
Score = 52 (23.4 bits), Expect = 5.6e-66, Sum P(3) = 5.6e-66
Identities = 38/143 (26%), Positives = 57/143 (39%)
Query: 435 RTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHL 494
RT + GN A S+TR SG + + N IS + + G S RH
Sbjct: 1133 RTDHHSDREGNWNAGSKTRGSGRNHNNRNQAD-NKPISRQ-DRSDRHWG--SSYRHESSS 1188
Query: 495 YFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGI--LPTHYKETGLILLNGQDENQLD 552
Y S+ NG IR+ S+ A N+ G+ LP K+ + G + +
Sbjct: 1189 Y-SAHHSQNGPIRSNTSQ--------DASGNIAYGMYRLPPGMKQNSVTSSEGHNVPSVM 1239
Query: 553 V------NHGASSPVESNHHPSL 569
+ N+ +SP E N + SL
Sbjct: 1240 MFYPYGHNNVYNSPSEHNEYGSL 1262
Score = 45 (20.9 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 421 VGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSK 465
VG VSG S RT +E +S +G S TR S AKD K
Sbjct: 788 VGSRSVSGASSVRSRTSSE--SSWDG---STTRGSKPAKDRRNRK 827
Score = 44 (20.5 bits), Expect = 9.1e-66, Sum P(3) = 9.1e-66
Identities = 27/112 (24%), Positives = 42/112 (37%)
Query: 577 TEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWW-YEHALNSSYSPM 635
T+ + ++A +T GS R N+ + S Q + W Y H +SSYS
Sbjct: 1134 TDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQDRSDRHWGSSYRHE-SSSYSAH 1192
Query: 636 SPQLLSQFQSKNSWDL-------MQRSLP-FRRNIIPQMSANGAVPRPLFYP 679
Q +S S D M R P ++N + + +FYP
Sbjct: 1193 HSQN-GPIRSNTSQDASGNIAYGMYRLPPGMKQNSVTSSEGHNVPSVMMFYP 1243
Score = 40 (19.1 bits), Expect = 3.1e-65, Sum P(3) = 3.1e-65
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 473 NETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILP 532
N ++ L S R + + T+G+ + +S + + S + + T G P
Sbjct: 760 NRLTRGDDLENSHSPVRGSSQIQSEERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKP 819
Score = 39 (18.8 bits), Expect = 5.6e-66, Sum P(3) = 5.6e-66
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 309 GRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSG 360
GR ++ N + TYG R + QP + + ++N R+ SG
Sbjct: 1054 GRPLAYTN--AVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANETPRYRSG 1103
>TAIR|locus:2063937 [details] [associations]
symbol:HESO1 "HEN1 suppressor 1" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IDA] [GO:0071076 "RNA 3'
uridylation" evidence=IMP] GO:GO:0005634 GO:GO:0005737
EMBL:CP002685 GO:GO:0071076 GO:GO:0016779 UniGene:At.21484
UniGene:At.37137 EMBL:BT015881 EMBL:BT020198 IPI:IPI00527276
RefSeq:NP_181504.2 ProteinModelPortal:Q5XET5 SMR:Q5XET5
IntAct:Q5XET5 PRIDE:Q5XET5 EnsemblPlants:AT2G39740.1 GeneID:818559
KEGG:ath:AT2G39740 TAIR:At2g39740 InParanoid:Q5XET5 OMA:VEDPFEQ
PhylomeDB:Q5XET5 ProtClustDB:CLSN2681710 Genevestigator:Q5XET5
Uniprot:Q5XET5
Length = 511
Score = 126 (49.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 48/185 (25%), Positives = 88/185 (47%)
Query: 47 QGIIAQVQPTVVSEERRKAVIDYVQRLIRNY---LGCEVFPFGSVPLKTYLPDGDIDLTA 103
Q I+ ++PT + R VID ++ ++++ G V PFGS + GD+D++
Sbjct: 12 QEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGDLDISV 71
Query: 104 --FGGLNVEEALANDVCSVLEREDQN-KAAEFVVKDAQLIRAEVKLVKCLV--QNIVVDI 158
F G ++ ++L + +A+ K +I A V ++K + Q I DI
Sbjct: 72 DLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQRISCDI 131
Query: 159 SFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETL 218
S + L GL FL + + G+ F+ ++L+K W + I + G ++Y+L L
Sbjct: 132 SIDNLDGLLKSRFLFWISEIDGR---FRDLVLLVKEWAKAHN-INDSKTGTFNSYSLSLL 187
Query: 219 VLYKF 223
V++ F
Sbjct: 188 VIFHF 192
Score = 63 (27.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 275 EQFSV-PSRG-FDT--NSRSFPPK--HLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGA 328
++F V P G ++T ++ ++ PK L + DP ++ N RSVS+ N RI F +
Sbjct: 269 QEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPVNAARSVSRRNLDRIAQVFQITS 328
Query: 329 RKL 331
R+L
Sbjct: 329 RRL 331
>SGD|S000005243 [details] [associations]
symbol:TRF5 "Non-canonical poly(A) polymerase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IGI] [GO:0043629 "ncRNA polyadenylation" evidence=IGI]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0007067 "mitosis" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IGI;IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IGI]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IGI] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI] [GO:0071044 "histone mRNA catabolic process"
evidence=IGI] [GO:0071050 "snoRNA polyadenylation" evidence=IGI]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IGI] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IGI;ISS;IMP;IDA] [GO:0007049
"cell cycle" evidence=IEA] InterPro:IPR002934 Pfam:PF01909
SGD:S000005243 Pfam:PF03828 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0046872 EMBL:BK006947 GO:GO:0031499
GO:GO:0071039 GO:GO:0071035 GO:GO:0071036 GO:GO:0071037
GO:GO:0071038 GO:GO:0071044 EMBL:U23084 eggNOG:COG5260
GO:GO:0004652 InterPro:IPR002058 OrthoDB:EOG43BQXK GO:GO:0071042
GO:GO:0071051 GeneTree:ENSGT00400000022055 GO:GO:0034475
HOGENOM:HOG000246586 GO:GO:0071050 EMBL:U47282 EMBL:Z71575
PIR:S60401 RefSeq:NP_014100.2 ProteinModelPortal:P48561 SMR:P48561
IntAct:P48561 MINT:MINT-1776475 STRING:P48561 EnsemblFungi:YNL299W
GeneID:855417 KEGG:sce:YNL299W KO:K12596 OMA:DFNDERD NextBio:979271
Genevestigator:P48561 GermOnline:YNL299W Uniprot:P48561
Length = 642
Score = 130 (50.8 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 97/462 (20%), Positives = 180/462 (38%)
Query: 39 WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDG 97
W +E + + + P+ + R ID ++R ++ + ++ FGS YLP
Sbjct: 175 WLTSE--IKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGS 232
Query: 98 DIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLV--QNIV 155
DID N ++ N + L R +NK ++ +++ V ++K + +
Sbjct: 233 DIDCVV-NSRNRDKEDRNYIYE-LARHLKNKG--LAIRMEVIVKTRVPIIKFIEPQSQLH 288
Query: 156 VDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYAL 215
+D+SF + GL + + R D R ++LI + R+ H G + + +
Sbjct: 289 IDVSFERTNGLEAAKLIREWLR----DSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTV 344
Query: 216 ETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVE 275
LV Y FL+ + + + N V + E+ +N G D + S + +
Sbjct: 345 ICLV-YSFLNMHPRIKSNDIDVLDNLGVLLIDFFELY---GKNFGYDDVAIS--ISDGYA 398
Query: 276 QFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL--GH 333
+ +P + T S L I DP NNN+ R N I+ AF GA +L
Sbjct: 399 SY-IPKSCWRTLEPSRSKFSLAIQDPGDPNNNISRG--SFNMKDIKKAFA-GAFELLVNK 454
Query: 334 ILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSG--TELCRE 391
+ D + K + ++ GQ+ D D L + + + T + +E
Sbjct: 455 CWELNSATFKDRVGKSILGNVIKY-RGQKRDFNDERDLVQNKAIIENERYHKRRTRIVQE 513
Query: 392 DQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSE 451
D I ++E + E ++D+ A+ K K G E + P + G + +
Sbjct: 514 DLFINDTE--DLPVEEIYKLDEPAKKKQKAKKDKREG-EIKKSAIPSPPPDFGVSRSKLK 570
Query: 452 TRLSG-DAKDLATSKNLNLVISNETSKCSSLSGEESKARHAP 492
++ D L NL++ S+ S ++ K R P
Sbjct: 571 RKVKKTDQGSLLHQNNLSIDDLMGLSENDQESDQDQKGRDTP 612
>POMBASE|SPAC12G12.13c [details] [associations]
symbol:cid14 "poly(A) polymerase Cid14" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0016075
"rRNA catabolic process" evidence=IGI] [GO:0016077 "snoRNA
catabolic process" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031125 "rRNA 3'-end processing"
evidence=IGI] [GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630
"ncRNA polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0065007 "biological regulation" evidence=NAS]
InterPro:IPR002934 Pfam:PF01909 PomBase:SPAC12G12.13c Pfam:PF03828
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006397
GO:GO:0003723 GO:GO:0031499 GO:GO:0043630 GO:GO:0016075
GO:GO:0016077 GO:GO:0016078 eggNOG:COG5260 GO:GO:0004652
InterPro:IPR002058 PIR:S62544 RefSeq:NP_001018181.1
ProteinModelPortal:Q9UTN3 STRING:Q9UTN3
EnsemblFungi:SPAC12G12.13c.1 GeneID:3361384 KEGG:spo:SPAC12G12.13c
KO:K03514 OMA:LISHEEE OrthoDB:EOG43BQXK NextBio:20811434
GO:GO:0065007 GO:GO:0007000 GO:GO:0031125 Uniprot:Q9UTN3
Length = 684
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 51/180 (28%), Positives = 84/180 (46%)
Query: 50 IAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108
I + PT RK ++ + Q +++ + ++ FGS K YLP D+DL +
Sbjct: 249 IDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEH 308
Query: 109 VEEALANDVCSVLEREDQNKAAEFVVKDAQLIR-AEVKLVKCL--VQNIVVDISFNQLGG 165
D+ + + K A + Q+I A V ++K + + + VDISFNQ GG
Sbjct: 309 HYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPGG 364
Query: 166 LSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILG-AHHGLISTYALETLVLYKFL 224
L T C + V+ + K + +I+IK + R L G +S+YA+ LV+ FL
Sbjct: 365 LKT-CLV--VNGFMKKYPALRPLVIIIKH--FLNMRALNEVFLGGLSSYAIVCLVV-SFL 418
>POMBASE|SPCC663.12 [details] [associations]
symbol:cid12 "poly(A) polymerase Cid12" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000077 "DNA damage checkpoint"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007094
"mitotic spindle assembly checkpoint" evidence=IGI] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0031048
"chromatin silencing by small RNA" evidence=IGI;IMP] [GO:0031134
"sister chromatid biorientation" evidence=IMP] [GO:0031379
"RNA-directed RNA polymerase complex" evidence=IDA] [GO:0031380
"nuclear RNA-directed RNA polymerase complex" evidence=IDA]
[GO:0043631 "RNA polyadenylation" evidence=ISM] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051315 "attachment of spindle
microtubules to kinetochore involved in mitotic sister chromatid
segregation" evidence=IMP] PomBase:SPCC663.12 Pfam:PF03828
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 GO:GO:0007094
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723
GO:GO:0030702 GO:GO:0031048 GO:GO:0031134 eggNOG:COG5260
GO:GO:0004652 InterPro:IPR002058 PIR:T41543 RefSeq:NP_588273.1
ProteinModelPortal:O74518 STRING:O74518 EnsemblFungi:SPCC663.12.1
GeneID:2539423 KEGG:spo:SPCC663.12 KO:K11700 OrthoDB:EOG4B8NQ6
NextBio:20800587 GO:GO:0031380 GO:GO:0043631 Uniprot:O74518
Length = 336
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 72/282 (25%), Positives = 129/282 (45%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRNY-LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE 111
V P + + RK +++ +Q IR L E+ +GS+ + T L D+D++ V E
Sbjct: 31 VSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDVS-LKSPRVGE 89
Query: 112 ALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCF 171
V VL R+ + A+F A++ R + LV V I VD++F G C
Sbjct: 90 LEKRRVTMVL-RKYLDADADFH-SSARVPR--INLVD--VSGIGVDLTF----GNDKACR 139
Query: 172 LEQVDRLIGKDH-LFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDY-FSK 229
++ + ++H +F R ++L+K W + E + HHG I++ AL + +L +L+ F K
Sbjct: 140 TAELQKAYNEEHPIFGRLLMLLKHWLF-ERDLENVHHGGIASCAL-SYMLIGWLEMRFHK 197
Query: 230 FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR 289
DS P+R + L + +L + + V + +G+
Sbjct: 198 KGIDSEV----QPIR-ALLQKFFYFWGVEWTYELFVLRPLTGQIVPKLQ---KGW---LN 246
Query: 290 SFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 331
P L+I DP+ NN++G+ + + I++AF A +L
Sbjct: 247 EVQPNLLSIEDPIDRNNDIGKQSFQISM--IKAAFVASANEL 286
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 712 702 0.00082 121 3 11 22 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 628 (67 KB)
Total size of DFA: 392 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.00u 0.12s 68.12t Elapsed: 00:00:05
Total cpu time: 68.00u 0.12s 68.12t Elapsed: 00:00:06
Start: Mon May 20 18:51:36 2013 End: Mon May 20 18:51:42 2013