BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005149
(712 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 49/296 (16%)
Query: 49 IIAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
I + PT RK ++ + Q +++ + ++ FGS K YLP D+DL
Sbjct: 248 FIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPE 307
Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL--VQNIVVDISFNQLG 164
+ D+ + + K A + Q+I A V ++K + + + VDISFNQ G
Sbjct: 308 HHYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPG 363
Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFL 224
GL T C + V+ + K + +I+IK + + + G +S+YA+ LV+
Sbjct: 364 GLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRA-LNEVFLGGLSSYAIVCLVV---- 415
Query: 225 DYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGF 284
+ L+ + S+ E E++ G LLL EFL+ +QF + G
Sbjct: 416 ----------SFLQLHPRLSTGSMRE------EDNFGVLLL--EFLELYGKQFYYDAVGI 457
Query: 285 DTNSRSF-------------PPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYG 327
++ F P L+I DP+ N++ +S S+G R+++ F G
Sbjct: 458 AVHNGGFYFSKKKMGWLKPNQPYLLSIQDPVDFQNDVSKS-SRG-LLRVKATFANG 511
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R+ V+ ++ ++++ + +V FGS YLP DIDL FG E + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFG--KWERPPLQLLEQAL 68
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQVDRLI 179
+ + + V D +A V ++K Q + VDISFN G+ F++ +
Sbjct: 69 RKHNVAEPCSIKVLD----KATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YM 121
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISL 239
K L I+++K + + + G IS+Y+L L+ FL + D +L
Sbjct: 122 KKYSLLPYLILVLKQFL-LQRDLNEVFTGGISSYSL-ILMAISFLQLHPRIDARRADENL 179
Query: 240 NGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVE-----QFSVPSRGFDTNSRSFPPK 294
++VE E G + +LK + + + + P
Sbjct: 180 G---------MLLVEFFELYGRNF----NYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPS 226
Query: 295 HLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 336
L I DPL N++GRS S G +++ F Y L H +S
Sbjct: 227 MLCIEDPLLPGNDVGRS-SYGAM-QVKQVFDYAYIVLSHAVS 266
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R+ V+ ++ ++++ + +V FGS YLP DIDL FG E + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKW--ERPPLQLLEQAL 68
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQVDRLI 179
+ + + V D +A V ++K Q + VDISFN G+ F++ +
Sbjct: 69 RKHNVAEPCSIKVLD----KATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YM 121
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISL 239
K L I+++K + + + G IS+Y+L L+ FL + D +L
Sbjct: 122 KKYSLLPYLILVLKQFL-LQRDLNEVFTGGISSYSL-ILMAISFLQLHPRIDARRADENL 179
Query: 240 NGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVE-----QFSVPSRGFDTNSRSFPPK 294
++VE E G + +LK + + + + P
Sbjct: 180 G---------MLLVEFFELYGRNF----NYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPS 226
Query: 295 HLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 336
L I DPL N++GRS S G +++ F Y L H +S
Sbjct: 227 MLCIEDPLLPGNDVGRS-SYGAM-QVKQVFDYAYIVLSHAVS 266
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 115/308 (37%), Gaps = 66/308 (21%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG----- 106
+ P E+ R V++ ++ +I+ + +V FGS YLP DIDL FG
Sbjct: 131 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 190
Query: 107 -LNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQL 163
+EEAL + ED K L +A V ++K + VDISFN
Sbjct: 191 LWTLEEALRKHKVA---DEDSVKV---------LDKATVPIIKLTDSFTEVKVDISFNVQ 238
Query: 164 GGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKF 223
G+ ++ K + ++L+ + + G I +Y+L L+ F
Sbjct: 239 NGVRAADLIKD----FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSL-FLMAVSF 293
Query: 224 LDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRG 283
L + D CI P + G LL+ EF + F+ G
Sbjct: 294 LQLHPRED---ACI------------------PNTNYGVLLI--EFFELYGRHFNYLKTG 330
Query: 284 FDTNS---------------RSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGA 328
+ P L I DPL+ N++GRS S G +++ AF Y
Sbjct: 331 IRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRS-SYGAM-QVKQAFDYAY 388
Query: 329 RKLGHILS 336
L H +S
Sbjct: 389 VVLSHAVS 396
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 66/308 (21%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG----- 106
+ P E+ R V+ ++ +I+ + +V FGS YLP DIDL FG
Sbjct: 145 MSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 204
Query: 107 -LNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQL 163
+EEAL + ED K L +A V ++K + VDISFN
Sbjct: 205 LWTLEEALRKHKVA---DEDSVKV---------LDKATVPIIKLTDSFTEVKVDISFNVQ 252
Query: 164 GGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKF 223
G+ ++ K + ++L+ + + G I +Y+L L+ F
Sbjct: 253 NGVRAADLIKD----FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSL-FLMAVSF 307
Query: 224 LDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRG 283
L + D CI P + G LL+ EF + F+ G
Sbjct: 308 LQLHPRED---ACI------------------PNTNYGVLLI--EFFELYGRHFNYLKTG 344
Query: 284 FDTNS---------------RSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGA 328
+ P L I DPL+ N++GRS S G +++ AF Y
Sbjct: 345 IRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRS-SYGAM-QVKQAFDYAY 402
Query: 329 RKLGHILS 336
L H +S
Sbjct: 403 VVLSHAVS 410
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 47 QGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFG 105
+ +A + P+ E R I ++ ++ + ++ FGS YLP DID
Sbjct: 184 KDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTS 243
Query: 106 GLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQN--IVVDISFNQL 163
L +E+ N + +N A E V + +A V ++K + + I +D+SF +
Sbjct: 244 ELGGKESRNNLYSLASHLKKKNLATEVEV----VAKARVPIIKFVEPHSGIHIDVSFERT 299
Query: 164 GGLSTLCFL-EQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYK 222
G+ + E +D G R ++LI + R+ H G + +++ LV +
Sbjct: 300 NGIEAAKLIREWLDDTPG-----LRELVLIVKQFLHARRLNNVHTGGLGGFSIICLV-FS 353
Query: 223 FL 224
FL
Sbjct: 354 FL 355
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 27/281 (9%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRNY-LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE 111
V P + + RK +++ +Q IR L E+ +GS+ + T L D+D++ V E
Sbjct: 31 VSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDVS-LKSPRVGE 89
Query: 112 ALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCF 171
V VL R+ + A+F A++ R + LV V I VD++F G C
Sbjct: 90 LEKRRVTMVL-RKYLDADADFH-SSARVPR--INLVD--VSGIGVDLTF----GNDKACR 139
Query: 172 LEQVDRLIGKDH-LFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKF 230
++ + ++H +F R ++L+K W + E + HHG I++ AL +++ F K
Sbjct: 140 TAELQKAYNEEHPIFGRLLMLLKHWLF-ERDLENVHHGGIASCALSYMLIGWLEMRFHKK 198
Query: 231 DWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRS 290
DS P+R + L + +L + + V + +G+ +
Sbjct: 199 GIDSEV----QPIR-ALLQKFFYFWGVEWTYELFVLRPLTGQIVPKL---QKGWLNEVQ- 249
Query: 291 FPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 331
P L+I DP+ NN++G+ + + I++AF A +L
Sbjct: 250 --PNLLSIEDPIDRNNDIGKQSFQISM--IKAAFVASANEL 286
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R ID ++R ++ + ++ FGS YLP DID N ++ N + L
Sbjct: 197 RNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDIDCVV-NSRNRDKEDRNYIYE-L 254
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQLGGLSTLCFLEQVDRLI 179
R +NK ++ +++ V ++K + + +D+SF + GL + + R
Sbjct: 255 ARHLKNKG--LAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLR-- 310
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLD 225
D R ++LI + R+ H G + + + LV Y FL+
Sbjct: 311 --DSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLV-YSFLN 353
>sp|Q5IS45|NMDE1_PANTR Glutamate receptor ionotropic, NMDA 2A OS=Pan troglodytes GN=GRIN2A
PE=2 SV=1
Length = 1464
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 566 HPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWW 622
HP M + W ++ +F+ GY PR V + + G +E+H +SL H W
Sbjct: 335 HP-FMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENHTLSLRHAVW 390
>sp|Q12879|NMDE1_HUMAN Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens GN=GRIN2A
PE=1 SV=1
Length = 1464
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 566 HPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWW 622
HP M + W ++ +F+ GY PR V + + G +E+H +SL H W
Sbjct: 335 HP-FMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENHTLSLRHAVW 390
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 296 LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 331
L I DP + ++N+GR+VS YRIR F +R L
Sbjct: 326 LAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLL 361
>sp|O60114|YG65_SCHPO Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15C4.05 PE=3 SV=1
Length = 1428
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 511 SEWKQQLNSGSAEK-NVTSGILP-THYKETGLILLNGQDENQLDVNHGASSPVESNHHPS 568
++W+QQL S SAEK V LP T ++ET +++ + +QL + G + +S P+
Sbjct: 610 NKWRQQLESESAEKFKVFRNQLPATMFRET---IIDAVNNSQLLIISGDTGCGKSTQIPA 666
Query: 569 LMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLS-DLSGDYESHQISLNHVWWWYEHA 627
+ + ST+ + Y PR + + AN +S +L G+ S + +H Y
Sbjct: 667 FL--LENSTKNGK-AVKIYVTEPRRISAISLANRVSQELGGNPPSAR---SHELVGYSVR 720
Query: 628 LNSSYSPMSP 637
L+S +P++P
Sbjct: 721 LDSKCTPLTP 730
>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens
GN=VPS13C PE=1 SV=1
Length = 3753
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 587 YHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSY------------SP 634
+ P+ P + + L Y+ HQIS +H W ++ ++ SP
Sbjct: 3119 WEVKPKQKWKPFSQKQIILLEQSYQKHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSP 3178
Query: 635 MSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEE 694
+ LS Q + QRSL R + + + +P +F + P+ P S ++
Sbjct: 3179 IKRDFLSGIQIEFKQSSHQRSLRAR---LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDS 3235
Query: 695 MPK 697
PK
Sbjct: 3236 EPK 3238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,892,938
Number of Sequences: 539616
Number of extensions: 12188348
Number of successful extensions: 22175
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 22151
Number of HSP's gapped (non-prelim): 61
length of query: 712
length of database: 191,569,459
effective HSP length: 125
effective length of query: 587
effective length of database: 124,117,459
effective search space: 72856948433
effective search space used: 72856948433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)