Query 005149
Match_columns 712
No_of_seqs 248 out of 968
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fh3_A Poly(A) RNA polymerase 100.0 4.1E-46 1.4E-50 395.4 23.8 259 38-333 12-335 (349)
2 3nyb_A Poly(A) RNA polymerase 100.0 1.4E-45 5E-50 390.8 25.0 252 35-333 14-298 (323)
3 4e8f_A Poly(A) RNA polymerase 100.0 6.4E-45 2.2E-49 396.8 23.3 289 30-334 32-364 (405)
4 2ikf_A RNA uridylyl transferas 100.0 1.2E-43 4.1E-48 379.7 16.4 253 42-332 28-349 (353)
5 3hj4_A Minor editosome-associa 100.0 1.7E-42 5.7E-47 374.1 21.4 275 39-333 4-366 (384)
6 1q79_A Poly(A) polymerase alph 100.0 1.5E-39 5.1E-44 363.4 27.5 252 44-336 40-353 (514)
7 2b4v_A RNA editing complex pro 100.0 4.1E-40 1.4E-44 364.5 19.8 291 27-335 5-441 (468)
8 2hhp_A Poly(A) polymerase; tem 100.0 1.2E-38 4.1E-43 357.2 29.8 252 44-336 27-340 (530)
9 3pq1_A Poly(A) RNA polymerase; 100.0 3.3E-38 1.1E-42 348.2 24.9 264 42-333 134-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.6 1.1E-14 3.9E-19 159.8 21.7 227 42-330 3-248 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.4 1.5E-11 5.3E-16 131.1 18.2 176 44-224 9-241 (349)
12 4at7_A Interleukin enhancer-bi 97.8 0.0011 3.6E-08 71.5 19.2 171 42-221 27-225 (364)
13 1no5_A Hypothetical protein HI 97.6 0.00016 5.4E-09 65.3 8.1 43 66-108 13-56 (114)
14 1wot_A Putative minimal nucleo 97.4 0.00031 1E-08 61.9 7.5 40 68-107 14-53 (98)
15 1ylq_A Putative nucleotidyltra 97.4 0.00023 7.8E-09 62.5 6.5 42 66-107 3-46 (96)
16 2rff_A Putative nucleotidyltra 96.6 0.0019 6.6E-08 58.4 4.9 46 62-107 11-61 (111)
17 4at7_B NF90, interleukin enhan 95.9 0.2 6.9E-06 54.4 16.8 79 46-124 16-137 (383)
18 4ebj_A Aminoglycoside nucleoti 95.1 0.016 5.3E-07 60.0 4.7 31 77-107 37-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.8 0.012 4.2E-07 59.9 3.0 44 65-108 14-60 (253)
20 3jz0_A Lincosamide nucleotidyl 89.2 0.66 2.3E-05 48.6 7.3 47 61-107 22-69 (287)
21 2fmp_A DNA polymerase beta; nu 61.6 21 0.00073 37.7 8.5 90 67-164 159-263 (335)
22 2fcl_A Hypothetical protein TM 51.5 59 0.002 31.1 9.0 42 62-103 14-60 (169)
23 2ihm_A POL MU, DNA polymerase 31.0 49 0.0017 35.3 5.3 57 66-123 162-220 (360)
24 1jms_A Terminal deoxynucleotid 28.6 88 0.003 33.7 6.8 41 67-108 183-224 (381)
25 2pbe_A AAD6, aminoglycoside 6- 27.2 46 0.0016 34.5 4.1 43 65-107 8-53 (294)
26 3er9_B Poly(A) polymerase cata 23.9 54 0.0019 36.0 3.9 72 34-105 129-209 (479)
27 2bcq_A DNA polymerase lambda; 23.9 70 0.0024 33.8 4.8 57 66-123 155-213 (335)
No 1
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=4.1e-46 Score=395.42 Aligned_cols=259 Identities=21% Similarity=0.330 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecCCcchh-HHHH
Q 005149 38 YWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-ALAN 115 (712)
Q Consensus 38 ~w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~~e-~l~~ 115 (712)
.+..++..+.+++++++||++|.++|+++++.|+++|+ .||+|+|++|||+++|+++|+||||+||..+..... .+..
T Consensus 12 ~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~ 91 (349)
T 4fh3_A 12 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIAL 91 (349)
T ss_dssp CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHH
Confidence 44567777888899999999999999999999999999 589999999999999999999999999998875533 3332
Q ss_pred HHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeec-------CeeEEeeeccCCcchhhHHHHHHHHHhCCChhhHH
Q 005149 116 DVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-------NIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKR 187 (712)
Q Consensus 116 ~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~-------gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p~fr~ 187 (712)
++...+.+ . ..+++.| +||||||||+++ ++.|||||++.+|+.++.++ ..++..+|+||+
T Consensus 92 ~~~~~~~~-------~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll---~~~~~~~~~~r~ 159 (349)
T 4fh3_A 92 QFYEELIA-------E--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLL---SSYTKLDARLKP 159 (349)
T ss_dssp HHHHHHHH-------T--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHH---HHHHHHCTTHHH
T ss_pred HHHHHHHh-------h--cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHH---HHHhhcCHHHHH
Confidence 33222221 1 1356667 999999999974 68999999999999999986 466778999999
Q ss_pred HHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHH-----------------------------------------------
Q 005149 188 SIILIKAWCYYESRILGAHHGLISTYALETLVL----------------------------------------------- 220 (712)
Q Consensus 188 LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL----------------------------------------------- 220 (712)
|+++||+||+ .+++++++.||||||+|++||+
T Consensus 160 l~~~iK~wak-~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~ 238 (349)
T 4fh3_A 160 MVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYS 238 (349)
T ss_dssp HHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCC
T ss_pred HHHHHHHHHH-HcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCcc
Confidence 9999999997 5667799999999999999983
Q ss_pred ------HHHHhhhc-CCCCCCceeeccCCcccCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCC-CCCCCCCC
Q 005149 221 ------YKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGF-DTNSRSFP 292 (712)
Q Consensus 221 ------~~FL~yYs-kFD~~~~~ISi~GpVplssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~-~~~~r~f~ 292 (712)
++||+||+ +|||++.+||++++... +.++.. .+......+ ........
T Consensus 239 slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~-------------------~~k~~k-----~~~~~~~~~~~~~~~~~~ 294 (349)
T 4fh3_A 239 SLGSLLHGFFRFYAYKFEPREKVVTFRRPDGY-------------------LTKQEK-----GWTSATEHTGSADQIIKD 294 (349)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCC-------------------CBHHHH-----TCC---------------
T ss_pred cHHHHHHHHHHHhhhccCCCCceEEecCCCCc-------------------cchHHh-----cccccccccCcccccCCC
Confidence 45778886 58888888887643210 001100 000000000 00011122
Q ss_pred CCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHh
Q 005149 293 PKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH 333 (712)
Q Consensus 293 ~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~~ 333 (712)
.+.|||||||+++||+||+|+..++.+||.||++|++.|.+
T Consensus 295 ~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~ 335 (349)
T 4fh3_A 295 RYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNS 335 (349)
T ss_dssp CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999999999999999976
No 2
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-45 Score=390.78 Aligned_cols=252 Identities=21% Similarity=0.376 Sum_probs=209.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCceEEeeccccCCCCCCCCceEEeecCCcchh--
Q 005149 35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-- 111 (712)
Q Consensus 35 ~~~~w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~~e-- 111 (712)
..+.-..|+++|.+|+++++||++|.+.|+++++.|+++++. ||+++|++|||+++|+++|+||||++|..+....+
T Consensus 14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~ 93 (323)
T 3nyb_A 14 QKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR 93 (323)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHH
Confidence 346677899999999999999999999999999999999995 79999999999999999999999999998865422
Q ss_pred HHHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEee--cCeeEEeeeccCCcchhhHHHHHHHHHhCCChhhHHH
Q 005149 112 ALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (712)
Q Consensus 112 ~l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~--~gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p~fr~L 188 (712)
.+...+.+.|++. ..+.+|++| +||||||||++ .||.|||||++.+|+.++.++ ..++..+|.||+|
T Consensus 94 ~~l~~l~~~L~~~-------~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~l 163 (323)
T 3nyb_A 94 NNLYSLASHLKKK-------NLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLREL 163 (323)
T ss_dssp HHHHHHHHHHHHT-------TSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHH
T ss_pred HHHHHHHHHHhhC-------CCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH---HHHHHhhhhHHHH
Confidence 3445555555542 123578889 99999999997 599999999999999999885 5678889999999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCcHHHHHHHH------------------------HHHHHhhhc-CCCCCCceeecc-CC
Q 005149 189 IILIKAWCYYESRILGAHHGLISTYALETLV------------------------LYKFLDYFS-KFDWDSYCISLN-GP 242 (712)
Q Consensus 189 vlLIK~Wa~yesRil~a~~GgLSSYaL~lMV------------------------L~~FL~yYs-kFD~~~~~ISi~-Gp 242 (712)
+++||+||+ .+++++++.||||||+|++|| |+.||+||+ +|||++++||+. |.
T Consensus 164 v~~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 164 VLIVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHHHHH-HcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCC
Confidence 999999997 566779999999999999998 679999998 899999999998 32
Q ss_pred -cccCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCCCCCCCCCCCCCeEEcCCCCCCCCcCCCCCHHHHHHHH
Q 005149 243 -VRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIR 321 (712)
Q Consensus 243 -VplssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~~~~~r~f~~~~L~IeDPfdpsNNLGRSVsk~nf~rIR 321 (712)
..+. ++ .+.. ...+. ....||||||++++||+||+++ ++.+||
T Consensus 243 ~~~~~--------------------k~-------~~~~----~~~~~---~~~~l~IeDP~~~~~nigr~~~--~~~~I~ 286 (323)
T 3nyb_A 243 PVYFP--------------------KS-------TWSA----IQPIK---NPFSLAIQDPGDESNNISRGSF--NIRDIK 286 (323)
T ss_dssp EEEEE--------------------GG-------GCGG----GCSCS---CSSSCCBEETTEEEEETTTTCT--THHHHH
T ss_pred cceee--------------------HH-------hccc----ccccC---CCceEEEeCCCCCCcccccchH--HHHHHH
Confidence 1110 00 0100 00011 1346999999999999999987 699999
Q ss_pred HHHHHHHHHHHh
Q 005149 322 SAFTYGARKLGH 333 (712)
Q Consensus 322 ~AF~~aa~~L~~ 333 (712)
++|+.|++.|.+
T Consensus 287 ~~F~~A~~~L~~ 298 (323)
T 3nyb_A 287 KAFAGAFDLLTN 298 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 3
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=6.4e-45 Score=396.79 Aligned_cols=289 Identities=20% Similarity=0.274 Sum_probs=203.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecCCc
Q 005149 30 NQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (712)
Q Consensus 30 ~p~~i~~~~w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~ 108 (712)
.++.+.++.|++|++++.+|+++++||++|.+.|+++++.|+++|+ .||+++|++|||+++|+++|+||||++|..+..
T Consensus 32 ~~~~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~ 111 (405)
T 4e8f_A 32 CSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSR 111 (405)
T ss_dssp ------CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC-
T ss_pred CccccCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCC
Confidence 4456678999999999999999999999999999999999999999 589999999999999999999999999998763
Q ss_pred c-hhHHHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEe-e--c----CeeEEeeeccCCcchhhHHHHHHHHHh
Q 005149 109 V-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL-V--Q----NIVVDISFNQLGGLSTLCFLEQVDRLI 179 (712)
Q Consensus 109 ~-~e~l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~-~--~----gI~VDISfNn~~Gl~~s~fLe~Vd~~v 179 (712)
. .+.+..++.+.|++. ..+|+.| +||||||||+ + . ||.|||||++..|+.++.+++ .++
T Consensus 112 ~~~~~~l~~l~~~L~~~---------~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~---~y~ 179 (405)
T 4e8f_A 112 VQSDTIALQFYEELIAE---------GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLS---SYT 179 (405)
T ss_dssp --CTTHHHHHHHHHHHT---------TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHH---HHH
T ss_pred CCHHHHHHHHHHHHHhc---------CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHH---HHH
Confidence 2 133555666666542 1356677 9999999999 5 3 899999999999999999864 456
Q ss_pred CCChhhHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHHHHHH-hhhc-----CCC--CCCceeeccCCc-c-cCCCC
Q 005149 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFL-DYFS-----KFD--WDSYCISLNGPV-R-ISSLP 249 (712)
Q Consensus 180 ~~~p~fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL~~FL-~yYs-----kFD--~~~~~ISi~GpV-p-lssLp 249 (712)
..+|+||+|+++||+||+ .+++++++.||||||+|++||+ .|| +... ... +....+.+.|-- . ...+.
T Consensus 180 ~~~p~~r~Lv~~lK~wak-~rgl~~~~~GglsSY~l~lmvi-~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~ 257 (405)
T 4e8f_A 180 KLDARLKPMVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVL-YYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLE 257 (405)
T ss_dssp HHCTTHHHHHHHHHHHHH-HTTCCCTTTTSCCHHHHHHHHH-HHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGG
T ss_pred hhCHHHHHHHHHHHHHHH-HcCCCcCcCCCcChHHHHHHHH-HHHHhccCCCcCCchhhcccccccccCCeeeccccchh
Confidence 678999999999999997 5667799999999999999985 355 3211 000 000000000000 0 00000
Q ss_pred cccccCCCCCCCcccccHHHHHHHHhhcCCCC----------------CCCCCCC--------CCCCCCCeEEcCCCCCC
Q 005149 250 EVVVETPENSGGDLLLSSEFLKECVEQFSVPS----------------RGFDTNS--------RSFPPKHLNIVDPLKEN 305 (712)
Q Consensus 250 ~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~----------------rG~~~~~--------r~f~~~~L~IeDPfdps 305 (712)
+..........+++| .+||++|+.+|+... ++|.... .......|||||||+++
T Consensus 258 ~~~~~~n~~slg~LL--~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~ 335 (405)
T 4e8f_A 258 DIPPSQNYSSLGSLL--HGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEIS 335 (405)
T ss_dssp GSCCCSCCCCHHHHH--HHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTT
T ss_pred hhccccccccHHHHH--HHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcc
Confidence 000000011123344 266666655544221 1121100 00124579999999999
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 005149 306 NNLGRSVSKGNFYRIRSAFTYGARKLGHI 334 (712)
Q Consensus 306 NNLGRSVsk~nf~rIR~AF~~aa~~L~~i 334 (712)
+|+||+|+..++.+||.+|++|++.|.+.
T Consensus 336 ~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~ 364 (405)
T 4e8f_A 336 HNVGRTVSSSGLYRIRGEFMAASRLLNSR 364 (405)
T ss_dssp CBTTTTCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999989999999999999999774
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.2e-43 Score=379.71 Aligned_cols=253 Identities=20% Similarity=0.268 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccc-cCCCCCCCCceEEeecCCcch---------
Q 005149 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVP-LKTYLPDGDIDLTAFGGLNVE--------- 110 (712)
Q Consensus 42 le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~-tGL~LP~SDIDL~V~~~~~~~--------- 110 (712)
+.+++.+++..+.++.+|.+.|+++++.|+++|+ .||+++|++|||++ +|+++|+||||++|+.+..+.
T Consensus 28 l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~ 107 (353)
T 2ikf_A 28 VGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAAT 107 (353)
T ss_dssp HHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCS
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchh
Confidence 3556666667788999999999999999999999 58999999999997 999999999999998763211
Q ss_pred -------hHHHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEee-cCeeEEeeeccCCcchhhHHHHHHHHHhCC
Q 005149 111 -------EALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV-QNIVVDISFNQLGGLSTLCFLEQVDRLIGK 181 (712)
Q Consensus 111 -------e~l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~-~gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~ 181 (712)
.++..++.++|++. . .+.+|+.| +||||||||++ .||+|||||++.+|+.+++++ ..++..
T Consensus 108 ~~~~~~~~~~l~~l~~~L~~~-----~--~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n~~g~~~t~ll---~~~~~~ 177 (353)
T 2ikf_A 108 QVAKGLQADILAKLARVIRQK-----H--LSWNVEEVRRTRVPVVRVKGGGAVDFDITAYRRNGVRNSALL---RAYFEQ 177 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----C--TTSEEEEECSSSSCEEEEECSSSCEEEEEESCCHHHHHHHHH---HHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhc-----C--CCCceEEecccceeEEEEEcCCCcEEEEEecCccHHHHHHHH---HHHHHh
Confidence 12233344444431 1 13578778 99999999999 499999999999999999986 456778
Q ss_pred ChhhHHHHHHHHHHHHHhhCccCCCC-CCCcHHHHHHHHH----------------------------------------
Q 005149 182 DHLFKRSIILIKAWCYYESRILGAHH-GLISTYALETLVL---------------------------------------- 220 (712)
Q Consensus 182 ~p~fr~LvlLIK~Wa~yesRil~a~~-GgLSSYaL~lMVL---------------------------------------- 220 (712)
+|+||+|+++||+||+ .+++++++. ||||||+|++||+
T Consensus 178 ~p~~r~l~~~iK~wa~-~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~s 256 (353)
T 2ikf_A 178 NPPCRWLSMSIKRWSK-QTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLE 256 (353)
T ss_dssp STTHHHHHHHHHHHHH-HTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHH
T ss_pred CccHHHHHHHHHHHHH-HcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCccc
Confidence 8999999999999997 566779999 9999999999982
Q ss_pred -----HHHHhhhc-CCCCCCceeeccCCcccCCCCcccccCCCCCCCcccccHHHHH--HHHhhcCCCCCCCCCCCCCCC
Q 005149 221 -----YKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLK--ECVEQFSVPSRGFDTNSRSFP 292 (712)
Q Consensus 221 -----~~FL~yYs-kFD~~~~~ISi~GpVplssLp~~~~e~pe~~~g~lLL~~efLr--~~~~~fs~~~rG~~~~~r~f~ 292 (712)
++||+||+ +|||++++||++.+..+ .++... .....+. +. +. ...
T Consensus 257 lg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~--------------------~k~~~~w~~~~~~~~----~~--~~-~~~ 309 (353)
T 2ikf_A 257 LGTQVLDFLHFFLHEFDSDKQVISLNRPGIT--------------------TKEELDWTKSAEDFA----RM--NG-EKV 309 (353)
T ss_dssp HHHHHHHHHHHHHHTSCTTTEEECSSSSSCE--------------------EHHHHTCSHHHHTTC----EE--TT-EEC
T ss_pred HHHHHHHHHHHhccccCcCceEEEcCCCcce--------------------echhhcccccccccc----cc--cC-CCC
Confidence 35677776 57777777776532110 011100 0000000 00 00 112
Q ss_pred CCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005149 293 PKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLG 332 (712)
Q Consensus 293 ~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~ 332 (712)
.+.|||||||+++||+||+|++.++.+||.+|++|++.+.
T Consensus 310 ~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 310 HYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp CCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred cceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999998753
No 5
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.7e-42 Score=374.10 Aligned_cols=275 Identities=19% Similarity=0.232 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecCCcch-----hH
Q 005149 39 WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-----EA 112 (712)
Q Consensus 39 w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~~-----e~ 112 (712)
-+++++||.+|+++++||++|.+.|++++++|+++|+ .||+++|++|||+++|+++|+||||+||..+.... +.
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~ 83 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMER 83 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHH
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccch
Confidence 3679999999999999999999999999999999999 59999999999999999999999999999865321 11
Q ss_pred H-HHHHHHHHHHHhhccccccceeeeEEEEeeeeeEEEeec--CeeEEeeeccCCcchhhHHHHHHHHHhCCCh-hhHHH
Q 005149 113 L-ANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQVDRLIGKDH-LFKRS 188 (712)
Q Consensus 113 l-~~~V~~iL~~~~~~~~a~f~V~~V~vI~ArVPIIK~~~~--gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p-~fr~L 188 (712)
. ...+..+++ .. +......++.|.+++||||||||++. ||.|||||||..|+.++.+++ .++..+| ++|+|
T Consensus 84 ~~~~~~lrll~-L~-k~~~~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~---~y~~~~p~rlr~L 158 (384)
T 3hj4_A 84 VDEQNNKRMTR-FG-KEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILC---AIRQVFPDFYGAY 158 (384)
T ss_dssp HHHHHHHHHHH-HH-HHHHHHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHH---HHHHTSHHHHHHH
T ss_pred hhHHHHHHHHH-HH-hhcccCCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHH---HHHhcCcHHHHHH
Confidence 1 111111111 00 11112345677777999999999985 999999999999999999864 4566645 69999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCcHHHHHHHH-------------------------------------------------
Q 005149 189 IILIKAWCYYESRILGAHHGLISTYALETLV------------------------------------------------- 219 (712)
Q Consensus 189 vlLIK~Wa~yesRil~a~~GgLSSYaL~lMV------------------------------------------------- 219 (712)
+++||+||+ .+++++++.||||||+|++||
T Consensus 159 vllvK~Wak-~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~ 237 (384)
T 3hj4_A 159 IHLVKAWGK-AREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDE 237 (384)
T ss_dssp HHHHHHHHH-HTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHH
T ss_pred HHHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcc
Confidence 999999997 567779999999999999998
Q ss_pred ---------HHHHHhhhcCCCCCCceeeccCCcccCCCCccccc--------------------CCCCCCCcccccHHHH
Q 005149 220 ---------LYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVE--------------------TPENSGGDLLLSSEFL 270 (712)
Q Consensus 220 ---------L~~FL~yYskFD~~~~~ISi~GpVplssLp~~~~e--------------------~pe~~~g~lLL~~efL 270 (712)
|++||+||++|||++++|||+.|..+.+++..+++ ..+.+ .+++.-+
T Consensus 238 sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~ 313 (384)
T 3hj4_A 238 KLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDG----PLDENDF 313 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC----SCCHHHH
T ss_pred cHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCC----CCCCCcc
Confidence 23699999999999999999988776665543321 11110 0011111
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHh
Q 005149 271 KECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH 333 (712)
Q Consensus 271 r~~~~~fs~~~rG~~~~~r~f~~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~~ 333 (712)
..-+.. +...++ ..+...||| |+..+|+||.|......+||.+|++|++.|.+
T Consensus 314 ~~~~~~--------~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (384)
T 3hj4_A 314 SASMQN--------ETTQRP-SNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLID 366 (384)
T ss_dssp HHHHHH--------HHHTSC-SSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTT
T ss_pred ccccCc--------cccccc-cccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhc
Confidence 000000 000011 145689999 99999999999999999999999999998865
No 6
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.5e-39 Score=363.41 Aligned_cols=252 Identities=22% Similarity=0.297 Sum_probs=198.5
Q ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh-----------------cCCceEEeeccccCCCCCCCCceEEee
Q 005149 44 EATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDGDIDLTAF 104 (712)
Q Consensus 44 ~ei~e~v~~--I~PT~eE~~~R~~VI~~Vq~lI~~~-----------------p~a~V~~FGS~~tGL~LP~SDIDL~V~ 104 (712)
.++.+++.. +.||+||.++|++|+++|+++|++| ++++|++|||+++|+++|+||||++|+
T Consensus 40 ~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v 119 (514)
T 1q79_A 40 QKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV 119 (514)
T ss_dssp HHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeEEEe
Confidence 344444443 8899999999999999999999977 479999999999999999999999999
Q ss_pred cCCcc-hhHHHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeecCeeEEeeeccCCcch---------------
Q 005149 105 GGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGGLS--------------- 167 (712)
Q Consensus 105 ~~~~~-~e~l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~gI~VDISfNn~~Gl~--------------- 167 (712)
++... .++++..+..+|++. ..+++|++| +|+||||||+..||.|||+|++..+..
T Consensus 120 ~p~~~~~~dff~~l~~~L~~~-------~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ 192 (514)
T 1q79_A 120 APRHVDRSDFFTSFYDKLKLQ-------EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKN 192 (514)
T ss_dssp ECTTSCHHHHTTHHHHHHHTC-------TTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCCTTCGGGGTT
T ss_pred cCCcCCHHHHHHHHHHHHhcC-------ccCceEEEecCCcccEEEEEECCeeEEEEEecCCcccCcccccCCchhhhcc
Confidence 98765 356666777777642 246889999 999999999999999999999865321
Q ss_pred ----------hhHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHH---------------HHH
Q 005149 168 ----------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLV---------------LYK 222 (712)
Q Consensus 168 ----------~s~fLe~Vd~~v~~~p~fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMV---------------L~~ 222 (712)
..+..++|.+++..++.||.++++||+||+ ++++++++.||||||+|++|| |..
T Consensus 193 ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak-~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~LL~~ 271 (514)
T 1q79_A 193 LDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK-RHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHK 271 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 123456678889999999999999999997 566778999999999999999 568
Q ss_pred HHhhhcCCCCCCceeeccCCcccCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCeEEcCC
Q 005149 223 FLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR-SFPPKHLNIVDP 301 (712)
Q Consensus 223 FL~yYskFD~~~~~ISi~GpVplssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~~~~~r-~f~~~~L~IeDP 301 (712)
||++|++|||++ ||.+..+.+ +.+- .+.|..... ......|+|+||
T Consensus 272 FF~~y~~~dw~~-------pV~l~~~~~----------~~l~----------------~~~w~p~~~~~dr~~~m~IidP 318 (514)
T 1q79_A 272 FFLVFSKWEWPN-------PVLLKQPEE----------CNLN----------------LPVWDPRVNPSDRYHLMPIITP 318 (514)
T ss_dssp HHHHHHSCCTTS-------CBCSSCCCC----------CSSC----------------CCCCCTTTCGGGGGCSSCBBCS
T ss_pred HHHHHhcCCCCC-------CeEecccCC----------CCCC----------------CcccCCccCCcCcccceeEeCC
Confidence 999999999986 222211100 0000 012211100 001245999999
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 005149 302 LKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 336 (712)
Q Consensus 302 fdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~~il~ 336 (712)
++|++|+|++|++.++++|++||++|++.|.+++.
T Consensus 319 ~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~ 353 (514)
T 1q79_A 319 AYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILL 353 (514)
T ss_dssp SSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998774
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=4.1e-40 Score=364.50 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=196.6
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeecc-ccCCCCCCCCceEEee
Q 005149 27 VPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSV-PLKTYLPDGDIDLTAF 104 (712)
Q Consensus 27 ~~p~p~~i~~~~w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~-~tGL~LP~SDIDL~V~ 104 (712)
.++....-..+.|..+...+.+......+++++.+.|..++++|+++|+ .||+|+|++|||+ ++|+++|+||||+||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~ 84 (468)
T 2b4v_A 5 LPSTKLNPSPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACM 84 (468)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEE
T ss_pred CCCccCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEe
Confidence 3444555577899999999999999999999999999999999999999 5899999999999 6999999999999999
Q ss_pred cCCcchhH--HH---HHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEe----e-----------------------
Q 005149 105 GGLNVEEA--LA---NDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL----V----------------------- 151 (712)
Q Consensus 105 ~~~~~~e~--l~---~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~----~----------------------- 151 (712)
.+...... -+ .++.++|++.. ..+.+.+|+.| +||||||||+ +
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~ 160 (468)
T 2b4v_A 85 FDDPYPSHEVQAKRTDKLRTVIKRYV----PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALL 160 (468)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHHTTS----CHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEE
T ss_pred cCCCCccchhhHHHHHHHHHHHHHhc----cccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccc
Confidence 87432111 11 23445555421 12224678889 9999999997 1
Q ss_pred --------------------------------------------------------------------------------
Q 005149 152 -------------------------------------------------------------------------------- 151 (712)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (712)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~ 240 (468)
T 2b4v_A 161 DVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVP 240 (468)
T ss_dssp EEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCC
T ss_pred cccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccc
Confidence
Q ss_pred --cCeeEEeeeccCCcchhhHHHHHHHHHhCCChh-hHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHHHHHHhhhc
Q 005149 152 --QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHL-FKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFS 228 (712)
Q Consensus 152 --~gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p~-fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL~~FL~yYs 228 (712)
.||+|||||| ..|+.++.++ ..++..+|+ +|+|+++||+||+ .+++++++.||||||+|++||+ .||+...
T Consensus 241 ~~~gi~~DISfn-~~gi~nS~ll---~~y~~~dpr~~r~Lvl~vK~Wak-~r~Ln~~~~G~LsSYal~lMVI-~fLQ~~~ 314 (468)
T 2b4v_A 241 EMFMYRWDISFV-GYGVKNSYLI---RHYLHNGPVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFI-YYLLVTR 314 (468)
T ss_dssp GGGSSCEEEESC-SHHHHHHHHH---HHHHHHSCTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHH-HHHHHTT
T ss_pred cccceEEEEecc-hhHHHHHHHH---HHHHhhChHHHHHHHHHHHHHHH-HcCCCCccCCCccHHHHHHHHH-HHHHhcC
Confidence 1578999998 9999999986 456777899 9999999999997 5667789999999999999985 4554432
Q ss_pred CCCCCCceeeccCCcc--cCCCCccc-----ccCCCCCCCcccccHHHHHHHHhhcCCCCC---------------CCCC
Q 005149 229 KFDWDSYCISLNGPVR--ISSLPEVV-----VETPENSGGDLLLSSEFLKECVEQFSVPSR---------------GFDT 286 (712)
Q Consensus 229 kFD~~~~~ISi~GpVp--lssLp~~~-----~e~pe~~~g~lLL~~efLr~~~~~fs~~~r---------------G~~~ 286 (712)
...+- ..|+. +..++... .+......+++| .+||++|+.+|+.... +|..
T Consensus 315 ~lP~v------~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL--~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~ 386 (468)
T 2b4v_A 315 QVLWV------DPWSLPHPAHLPRYPDFSPLYDCDPTELGRLL--HGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNF 386 (468)
T ss_dssp SSCCC------CGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHH--HHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCC
T ss_pred cCCCC------CcccccchhhcccccCCCcccccCccCHHHHH--HHHHHHHccccCCCCcEEEecCCcceecccccccc
Confidence 21100 00000 00000000 000000122333 2566666555543211 1110
Q ss_pred --CCCCCCCCCeEEcCCCCC----CCCcCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 005149 287 --NSRSFPPKHLNIVDPLKE----NNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 335 (712)
Q Consensus 287 --~~r~f~~~~L~IeDPfdp----sNNLGRSVsk~nf~rIR~AF~~aa~~L~~il 335 (712)
+.+.-....|||||||++ ++|+||+|+..++.+||.+|+.|++.|.+..
T Consensus 387 ~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 387 PQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp GGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 000001236999999999 9999999998899999999999999998754
No 8
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-38 Score=357.22 Aligned_cols=252 Identities=19% Similarity=0.302 Sum_probs=197.9
Q ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhc-----------------CCceEEeeccccCCCCCCCCceEEee
Q 005149 44 EATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNYL-----------------GCEVFPFGSVPLKTYLPDGDIDLTAF 104 (712)
Q Consensus 44 ~ei~e~v~~--I~PT~eE~~~R~~VI~~Vq~lI~~~p-----------------~a~V~~FGS~~tGL~LP~SDIDL~V~ 104 (712)
.++.+++.. +.||++|.++|++|++.|+++|++|+ +++|++|||+++|+++|+||||++|+
T Consensus 27 ~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~~v~ 106 (530)
T 2hhp_A 27 DSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVV 106 (530)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeEEEe
Confidence 344444433 89999999999999999999999884 69999999999999999999999999
Q ss_pred cCCcc-hhHHHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeecCeeEEeeeccCCc--------c--------
Q 005149 105 GGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGG--------L-------- 166 (712)
Q Consensus 105 ~~~~~-~e~l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~gI~VDISfNn~~G--------l-------- 166 (712)
++... .+++...+..+|++ ...+++|++| +|+||||||+..||.|||+|++..+ +
T Consensus 107 ~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ 179 (530)
T 2hhp_A 107 VPKHVTREDFFTVFDSLLRE-------RKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRN 179 (530)
T ss_dssp ECTTCCHHHHHHHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTCCSCCGGGGTT
T ss_pred cCCcCCHHHHHHHHHHHHhc-------CCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCcccCCCchhhhhc
Confidence 98754 34566677766654 2246889999 9999999999999999999987632 1
Q ss_pred ---------hhhHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHH---------------HHH
Q 005149 167 ---------STLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLV---------------LYK 222 (712)
Q Consensus 167 ---------~~s~fLe~Vd~~v~~~p~fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMV---------------L~~ 222 (712)
...+..++|.+++...+.||.++++||+||+ ++++++++.||||||+|++|| |..
T Consensus 180 ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak-~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~LL~~ 258 (530)
T 2hhp_A 180 LDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQ-RRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNR 258 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1123456678899999999999999999997 566778999999999999999 568
Q ss_pred HHhhhcCCCCCCceeeccCCcccCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCeEEcCC
Q 005149 223 FLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNS-RSFPPKHLNIVDP 301 (712)
Q Consensus 223 FL~yYskFD~~~~~ISi~GpVplssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~~~~~-r~f~~~~L~IeDP 301 (712)
||++|++|||++ .|.+. .+.+ +.+- .+.|.... ..-....|+|+||
T Consensus 259 FF~~y~~~dw~~-pV~l~------~~~~----------g~~~----------------~~~w~p~~~~~d~~~~m~Ii~P 305 (530)
T 2hhp_A 259 FFIILSEWNWPQ-PVILK------PIED----------GPLQ----------------VRVWNPKIYAQDRSHRMPVITP 305 (530)
T ss_dssp HHHHHHHCCTTS-CEESS------CCCC----------CSSC----------------SCCCCTTTCHHHHTCSSCEECS
T ss_pred HHHHHhcCCCCC-ceEec------ccCC----------CCcc----------------ccccCcccCCCCCccceeEECC
Confidence 999999999985 33332 1100 0000 01121100 0001356999999
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 005149 302 LKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 336 (712)
Q Consensus 302 fdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~~il~ 336 (712)
++|++|++++|++.++++|++||++|++.|.+++.
T Consensus 306 ~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~ 340 (530)
T 2hhp_A 306 AYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340 (530)
T ss_dssp SSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998764
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=348.23 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecCCcch----------
Q 005149 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE---------- 110 (712)
Q Consensus 42 le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~~---------- 110 (712)
++++|.+|+++++||++|.++|..+++.|+++|+ .||+|+|++|||++|||++|+|||||||..+....
T Consensus 134 l~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~ 213 (464)
T 3pq1_A 134 IDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNF 213 (464)
T ss_dssp HHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccch
Confidence 7999999999999999999999999999999999 59999999999999999999999999997653110
Q ss_pred -----------hH-HHHHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeec--CeeEEeeeccCCcchhhHHHHHH
Q 005149 111 -----------EA-LANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQV 175 (712)
Q Consensus 111 -----------e~-l~~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~--gI~VDISfNn~~Gl~~s~fLe~V 175 (712)
+. ..+.+...+.+..++.. ..+.+|+.| +||||||||++. ||.|||||||..|+.+++|+
T Consensus 214 ~le~~~k~l~seR~~~~~iL~~la~~L~~~~--~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll--- 288 (464)
T 3pq1_A 214 LMEFQVKNVPSERIATQKILSVLGECLDHFG--PGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELL--- 288 (464)
T ss_dssp --EECCCCCSCHHHHHHHHHHHHHHHHHHSS--TTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHH---
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHhcC--CCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHH---
Confidence 00 11223333333332211 134688888 999999999996 99999999999999999986
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHhhCccCCCCCC-CcHHHHHHHHHHHHHhhhc--CCC----C-----CCceeeccCC-
Q 005149 176 DRLIGKDHLFKRSIILIKAWCYYESRILGAHHGL-ISTYALETLVLYKFLDYFS--KFD----W-----DSYCISLNGP- 242 (712)
Q Consensus 176 d~~v~~~p~fr~LvlLIK~Wa~yesRil~a~~Gg-LSSYaL~lMVL~~FL~yYs--kFD----~-----~~~~ISi~Gp- 242 (712)
..++..+|++|+|+++||+||+ .+++++++.|| ||||+|++||+ .|||... -.. - .....-+.|.
T Consensus 289 ~~y~~~dprlr~Lvl~vK~Wak-~r~Ln~~~~Gg~LsSYsL~lMVI-~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~ 366 (464)
T 3pq1_A 289 YIYGALDSRVRALVFSVRCWAR-AHSLTSSIPGAWITNFSLTMMVI-FFLQRRSPPILPTLDSLKTLADAEDKCVIEGNN 366 (464)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HTTSSCC--CCSCCHHHHHHHHH-HHHHSCC-------CCSHHHHTTC---------
T ss_pred HHHHHhCccHHHHHHHHHHHHH-HhCCCccccCCCcCcHHHHHHHH-HHHHccCCCcCCChHHhccccCcccceeecccc
Confidence 5678889999999999999997 56677899998 99999999996 6888753 110 0 0000001110
Q ss_pred cc-cCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCCCCCCCCCCCCCeEEcCCCCCCCCcCCCCCHHHHHHHH
Q 005149 243 VR-ISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIR 321 (712)
Q Consensus 243 Vp-lssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~~~~~r~f~~~~L~IeDPfdpsNNLGRSVsk~nf~rIR 321 (712)
+. ...+..+........-++|| .+||++|+ .|+ |....|+| ..|++|+|+...+.|++
T Consensus 367 ~~F~~dl~~l~~~~N~~slgeLL--~gFF~yYa-~FD------------f~~~vIsI------~~Nvs~nV~~~~~~r~~ 425 (464)
T 3pq1_A 367 CTFVRDLSRIKPSQNTETLELLL--KEFFEYFG-NFA------------XXXXXXXX------XXXXXXXVSQSQLQKFV 425 (464)
T ss_dssp ------------CCCCCCHHHHH--HHHHHHGG-GCC------------CCCCCCCC------C-------CHHHHHHHH
T ss_pred ccccccHhhcCCCCCcCCHHHHH--HHHHHHHH-hCC------------Cccccccc------ccccccccCHHHHHHHH
Confidence 00 00111110000111224555 49999987 464 23344677 89999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005149 322 SAFTYGARKLGH 333 (712)
Q Consensus 322 ~AF~~aa~~L~~ 333 (712)
.+++.|+..|.+
T Consensus 426 ~~~r~a~~il~~ 437 (464)
T 3pq1_A 426 DLARESAWILQQ 437 (464)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.63 E-value=1.1e-14 Score=159.84 Aligned_cols=227 Identities=19% Similarity=0.224 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEeeccccCCCCCC-CCceEEeecCCcch-hHHHHHHHH
Q 005149 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPD-GDIDLTAFGGLNVE-EALANDVCS 119 (712)
Q Consensus 42 le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~~~p~a~V~~FGS~~tGL~LP~-SDIDL~V~~~~~~~-e~l~~~V~~ 119 (712)
+++.+.+|+++|.|+++|.+.-+.+++.|...|+. .++++...||++.||+|++ +||||.|..+.... +++...-..
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46778999999999999988888889999999987 5689999999999999996 99999999986543 333222233
Q ss_pred HHHHHhhccccccceeeeEEE-EeeeeeEEEeecCeeEEe--eeccCCc--chh-hHHHHHHHHHhCCCh-hhHHHHHHH
Q 005149 120 VLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDI--SFNQLGG--LST-LCFLEQVDRLIGKDH-LFKRSIILI 192 (712)
Q Consensus 120 iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~gI~VDI--SfNn~~G--l~~-s~fLe~Vd~~v~~~p-~fr~LvlLI 192 (712)
+++.+.+ +.. + .|.-|-|.....|++||| ++.-..| +.+ .+....-.+++.... .++.+++++
T Consensus 82 ~~~e~l~---------~~~-~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLL 151 (437)
T 1r89_A 82 IGKAVLD---------SYE-IRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLL 151 (437)
T ss_dssp HHHHHSS---------SEE-EEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHHH---------Hhh-hhccCCceEEEEecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHH
Confidence 3333321 122 4 678888888888999998 4443332 322 222111223333211 178999999
Q ss_pred HHHHHHhhCccC--CCCCCCcHHHHHHHHHHHHHhhhcCC--------CCCCceeeccCCcccCCCCcccccCCCCCCCc
Q 005149 193 KAWCYYESRILG--AHHGLISTYALETLVLYKFLDYFSKF--------DWDSYCISLNGPVRISSLPEVVVETPENSGGD 262 (712)
Q Consensus 193 K~Wa~yesRil~--a~~GgLSSYaL~lMVL~~FL~yYskF--------D~~~~~ISi~GpVplssLp~~~~e~pe~~~g~ 262 (712)
|+|++ ..++++ ...+|+|||++.||+++ |+.| +|.. ++.|
T Consensus 152 K~f~k-~~~~ygse~k~~gfSsYllELLv~~-----yG~f~~vl~~~~~w~~-~~~I----------------------- 201 (437)
T 1r89_A 152 KGFLK-ANGIYGAEYKVRGFSGYLCELLIVF-----YGSFLETVKNARRWTR-RTVI----------------------- 201 (437)
T ss_dssp HHHHH-HTTCBCCSTTTCCBCHHHHHHHHHH-----HSSHHHHHHHHTTCCT-TEEE-----------------------
T ss_pred HHHHH-hCCcCCCcccCCCCCHHHHHHHHHH-----HcCHHHHHHHHHHhCC-CeEE-----------------------
Confidence 99987 566665 47789999999999974 3332 2221 0000
Q ss_pred ccccHHHHHHHHhhcCCCCCCCCCCCCCCCCCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHH
Q 005149 263 LLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARK 330 (712)
Q Consensus 263 lLL~~efLr~~~~~fs~~~rG~~~~~r~f~~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~~ 330 (712)
+ |. .+. ..| ..+|.|.||.||.||+|++++..++.++..+.+...+.
T Consensus 202 ---d----------~~---~~~----~~~-~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~ 248 (437)
T 1r89_A 202 ---D----------VA---KGE----VRK-GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFMEA 248 (437)
T ss_dssp ---E----------GG---GTE----EEE-CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS
T ss_pred ---e----------cC---CCc----ccC-CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHhC
Confidence 0 00 000 112 45689999999999999999988888777666544433
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.35 E-value=1.5e-11 Score=131.06 Aligned_cols=176 Identities=25% Similarity=0.365 Sum_probs=97.3
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHh-hc-C----C---ceEEeeccccCCCCCC-CCceEEeecCCcc--h
Q 005149 44 EATQGII-AQVQPTVVSEERRKAVIDYVQRLIRN-YL-G----C---EVFPFGSVPLKTYLPD-GDIDLTAFGGLNV--E 110 (712)
Q Consensus 44 ~ei~e~v-~~I~PT~eE~~~R~~VI~~Vq~lI~~-~p-~----a---~V~~FGS~~tGL~LP~-SDIDL~V~~~~~~--~ 110 (712)
..+++|+ +.|+|+.++...-+..++.|...|+. .. + . +++..||++.|++|++ |||||+|+.+... +
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 3567777 89999999988777888889988885 21 1 2 6778899999999995 9999999987521 1
Q ss_pred h------HHHHHHHHHHHHHhhccccccceeeeEEE--Eeeeee-EEEee------cCeeEEee--eccCCcc-------
Q 005149 111 E------ALANDVCSVLEREDQNKAAEFVVKDAQLI--RAEVKL-VKCLV------QNIVVDIS--FNQLGGL------- 166 (712)
Q Consensus 111 e------~l~~~V~~iL~~~~~~~~a~f~V~~V~vI--~ArVPI-IK~~~------~gI~VDIS--fNn~~Gl------- 166 (712)
+ .+.+.+.+.|+..... ..+.+ .+++. .-+.|- |.+.. .++.|||- |++.+.+
T Consensus 89 ~~~~~~~~~l~~i~~~L~~~~~~--~~~~~-~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~ 165 (349)
T 1px5_A 89 DQLRRRGEFIQEIRRQLEACQRE--QKFKV-TFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPN 165 (349)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH--CCCSS-EEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCC
T ss_pred hHHhhHHHHHHHHHHHHHHhhhh--hcccc-ceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCC
Confidence 2 2234444445443321 11211 22221 113452 44443 47889963 4532211
Q ss_pred -------------------hhhHHHHHHHHHh-CCChhhHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHHHHHH
Q 005149 167 -------------------STLCFLEQVDRLI-GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFL 224 (712)
Q Consensus 167 -------------------~~s~fLe~Vd~~v-~~~p~fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL~~FL 224 (712)
...++.+.=.+++ .+...+|.||+|||+|.+. . .......+++||+|++|+++.+-
T Consensus 166 ~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~-~-~~~~~~~~~ssy~lELL~~~a~e 241 (349)
T 1px5_A 166 PEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQT-C-KKTHGNKLPPQYALELLTVYAWE 241 (349)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHH-H-HTTCSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHH-h-hhcccCCCCChHHHHHHHHHHHH
Confidence 0111111101222 3345789999999999742 2 12233578999999999976544
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.78 E-value=0.0011 Score=71.45 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh---cCC------ceEEeeccccCCCCCC-CCceEEeecCCcchh
Q 005149 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNY---LGC------EVFPFGSVPLKTYLPD-GDIDLTAFGGLNVEE 111 (712)
Q Consensus 42 le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~~~---p~a------~V~~FGS~~tGL~LP~-SDIDL~V~~~~~~~e 111 (712)
+.+++.+=-..|.||++|...-..++.+|+++|... |+. .|...||++.|+++.+ -|+|++|++...-..
T Consensus 27 ~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT~ 106 (364)
T 4at7_A 27 FSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTL 106 (364)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCCBH
T ss_pred HHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCCCH
Confidence 333444444789999999999999999999998842 443 5889999999999995 789999998653222
Q ss_pred H----HHHHHHHHHHHHhhccccccceee--eEEE--EeeeeeEEEee--------cCe--eEEeeeccCCcchhhHHHH
Q 005149 112 A----LANDVCSVLEREDQNKAAEFVVKD--AQLI--RAEVKLVKCLV--------QNI--VVDISFNQLGGLSTLCFLE 173 (712)
Q Consensus 112 ~----l~~~V~~iL~~~~~~~~a~f~V~~--V~vI--~ArVPIIK~~~--------~gI--~VDISfNn~~Gl~~s~fLe 173 (712)
. +.++|..-|..............+ +.+. .|.|-|+--.. ... +..++...+..++.++|.+
T Consensus 107 e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhAkWfq 186 (364)
T 4at7_A 107 EAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFE 186 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCCCcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhhHHHH
Confidence 2 445555555543210000000011 1112 23333321111 122 2223444455555555554
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHHH
Q 005149 174 QVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLY 221 (712)
Q Consensus 174 ~Vd~~v~~~p~fr~LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL~ 221 (712)
... .+...+.+++++|..++ |. +..+.|+.|+|.+|+.|
T Consensus 187 ---~na-~~s~v~~lIRIlkDlc~---R~--~~w~pL~~waLELL~~~ 225 (364)
T 4at7_A 187 ---ENA-SQSTVKVLIRLLKDLRI---RF--PGFEPLTPWILDLLGHY 225 (364)
T ss_dssp ---HHC-CCHHHHHHHHHHHHHHH---HC--GGGTTCCHHHHHHHHHH
T ss_pred ---hhc-cccccceeehhhHHHHH---hc--CCcCCCCHHHHHHHHHH
Confidence 222 24556789999999874 32 23367999999999964
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.59 E-value=0.00016 Score=65.28 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhh-cCCceEEeeccccCCCCCCCCceEEeecCCc
Q 005149 66 VIDYVQRLIRNY-LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (712)
Q Consensus 66 VI~~Vq~lI~~~-p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~ 108 (712)
.++.|+++++.+ ....|+.|||++.|-+.++|||||+|.....
T Consensus 13 ~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP 56 (114)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC
Confidence 455667777755 4578999999999999999999999998754
No 14
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.42 E-value=0.00031 Score=61.89 Aligned_cols=40 Identities=28% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCceEEeeccccCCCCCCCCceEEeecCC
Q 005149 68 DYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (712)
Q Consensus 68 ~~Vq~lI~~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~ 107 (712)
+.++.+++++.-..|+.|||++.|-+.|+|||||+|....
T Consensus 14 ~~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 14 EAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 3344444455557899999999999999999999998764
No 15
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.41 E-value=0.00023 Score=62.48 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=35.5
Q ss_pred HHHHHHHHHHh-hcCCceEEeeccccCCCCCC-CCceEEeecCC
Q 005149 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPD-GDIDLTAFGGL 107 (712)
Q Consensus 66 VI~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~-SDIDL~V~~~~ 107 (712)
+++.+.+.+++ ++..+|..|||++.|-+.|+ |||||+|+.+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 45667777775 55689999999999999999 99999998764
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0019 Score=58.37 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH----hhcC-CceEEeeccccCCCCCCCCceEEeecCC
Q 005149 62 RRKAVIDYVQRLIR----NYLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (712)
Q Consensus 62 ~R~~VI~~Vq~lI~----~~p~-a~V~~FGS~~tGL~LP~SDIDL~V~~~~ 107 (712)
.+.++++.+++++. .+++ ..|..|||++.|-+.++|||||+|....
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34555555555554 3445 5799999999999999999999998764
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=95.89 E-value=0.2 Score=54.38 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh---hcC---------------------------------------CceE
Q 005149 46 TQGIIAQVQPTVVSEERRKAVIDYVQRLIRN---YLG---------------------------------------CEVF 83 (712)
Q Consensus 46 i~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~~---~p~---------------------------------------a~V~ 83 (712)
+..=.+.|-|+++|.+.-+.++..++++++. |.+ +-|.
T Consensus 16 vmaKH~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVM 95 (383)
T 4at7_B 16 VMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVM 95 (383)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEE
T ss_pred hhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeee
Confidence 3444467999999999999999999998883 310 1166
Q ss_pred EeeccccCCCCC-CCCceEEeecCCcchhHHHHHHHHHHHHH
Q 005149 84 PFGSVPLKTYLP-DGDIDLTAFGGLNVEEALANDVCSVLERE 124 (712)
Q Consensus 84 ~FGS~~tGL~LP-~SDIDL~V~~~~~~~e~l~~~V~~iL~~~ 124 (712)
-.|+++-||.|. +-++||||++...-...+.+.|...|...
T Consensus 96 RVG~laKGlLLkGd~~veLVvlck~kPT~~ll~~va~~L~~q 137 (383)
T 4at7_B 96 RVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQ 137 (383)
T ss_dssp ECHHHHHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHHHHHH
T ss_pred EeceecccceECCCCceeEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 799999999997 58999999987655556666666655443
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=95.15 E-value=0.016 Score=59.96 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=27.3
Q ss_pred hcC-CceEEeeccccCCCCCCCCceEEeecCC
Q 005149 77 YLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (712)
Q Consensus 77 ~p~-a~V~~FGS~~tGL~LP~SDIDL~V~~~~ 107 (712)
+++ .+|..|||++.|-+.++|||||+|+...
T Consensus 37 ~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 37 YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 444 5799999999999999999999999764
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.84 E-value=0.012 Score=59.88 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH-hhc--CCceEEeeccccCCCCCCCCceEEeecCCc
Q 005149 65 AVIDYVQRLIR-NYL--GCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (712)
Q Consensus 65 ~VI~~Vq~lI~-~~p--~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~ 108 (712)
.+++.+...++ .+. -..|..|||++.|-+.++|||||+|.....
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 34444444444 344 267999999999999999999999987643
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.24 E-value=0.66 Score=48.57 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC-ceEEeeccccCCCCCCCCceEEeecCC
Q 005149 61 ERRKAVIDYVQRLIRNYLGC-EVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (712)
Q Consensus 61 ~~R~~VI~~Vq~lI~~~p~a-~V~~FGS~~tGL~LP~SDIDL~V~~~~ 107 (712)
+..+++++.|.+.++.-+.+ .|..+||+++|-.-.-||||++++...
T Consensus 22 ~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 22 LKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 44566778888877765664 588999999998888899999999865
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=61.59 E-value=21 Score=37.75 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHHHHHHHh-hcCCceEEeeccccCCCCCCCCceEEeecCCcc-----hhHHHHHHHHHHHHHhhccccccceeeeEEE
Q 005149 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-----EEALANDVCSVLEREDQNKAAEFVVKDAQLI 140 (712)
Q Consensus 67 I~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~-----~e~l~~~V~~iL~~~~~~~~a~f~V~~V~vI 140 (712)
.+.|.+.++. -++++|.+-|||.-|--. .+|||++|..+... ...+...|...|... .+ +.++...
T Consensus 159 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~------~~-v~~~l~~ 230 (335)
T 2fmp_A 159 QDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKV------HF-ITDTLSK 230 (335)
T ss_dssp HHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHT------TS-EEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhC------Cc-ceeeeec
Confidence 3444444443 367999999999988765 68999999987321 123455555555542 12 2333222
Q ss_pred -EeeeeeE-EEee-------cCeeEEeeeccCC
Q 005149 141 -RAEVKLV-KCLV-------QNIVVDISFNQLG 164 (712)
Q Consensus 141 -~ArVPII-K~~~-------~gI~VDISfNn~~ 164 (712)
..+.-+| ++.. .++.|||-+-...
T Consensus 231 g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~ 263 (335)
T 2fmp_A 231 GETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKD 263 (335)
T ss_dssp CSSEEEEEECCCCCTTCCCCCCEEEEEEECCGG
T ss_pred CCceEEEEEEeCCcccccCCCceEEEEEEECHH
Confidence 3444333 2222 2789999886543
No 22
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=51.52 E-value=59 Score=31.05 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhh--cCCceEEeecccc---CCCCCCCCceEEe
Q 005149 62 RRKAVIDYVQRLIRNY--LGCEVFPFGSVPL---KTYLPDGDIDLTA 103 (712)
Q Consensus 62 ~R~~VI~~Vq~lI~~~--p~a~V~~FGS~~t---GL~LP~SDIDL~V 103 (712)
.|+.+.+.+++++... -++.-..-||++. |+-.+.-||||.+
T Consensus 14 ~~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i 60 (169)
T 2fcl_A 14 IRPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQT 60 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEe
Confidence 3566666677777643 4788889999984 7778899999999
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=30.99 E-value=49 Score=35.35 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHHHHHHh-hcCCceEEeeccccCCCCCCCCceEEeecCCcc-hhHHHHHHHHHHHH
Q 005149 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALANDVCSVLER 123 (712)
Q Consensus 66 VI~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~-~e~l~~~V~~iL~~ 123 (712)
+.+.|.+.++. -|+++|.+-|||.-|--. .+|||++|..+... ...+...|...|..
T Consensus 162 i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~ 220 (360)
T 2ihm_A 162 LQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQS 220 (360)
T ss_dssp HHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHh
Confidence 33444444543 478999999999988766 67999999977532 33455555555544
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=28.64 E-value=88 Score=33.72 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=30.4
Q ss_pred HHHHHHHHHh-hcCCceEEeeccccCCCCCCCCceEEeecCCc
Q 005149 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (712)
Q Consensus 67 I~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~ 108 (712)
.+.|.+.++. -++++|.+-|||.-|--. .+|||++|..+..
T Consensus 183 a~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~ 224 (381)
T 1jms_A 183 SMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEA 224 (381)
T ss_dssp HHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCc
Confidence 3334444443 478999999999988766 5799999998754
No 25
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=27.23 E-value=46 Score=34.54 Aligned_cols=43 Identities=19% Similarity=-0.024 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhcCC-ceEEeeccccCC--CCCCCCceEEeecCC
Q 005149 65 AVIDYVQRLIRNYLGC-EVFPFGSVPLKT--YLPDGDIDLTAFGGL 107 (712)
Q Consensus 65 ~VI~~Vq~lI~~~p~a-~V~~FGS~~tGL--~LP~SDIDL~V~~~~ 107 (712)
++++.|.+..+.-..+ -|..-||.+++- .-.-||+||+++...
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 5677777777655554 478899999966 666799999999874
No 26
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=23.93 E-value=54 Score=35.96 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHhh---cCCceEEeeccccCCCCCC---CCceEEee
Q 005149 34 IGAEYWQRAEEATQGIIAQVQPTVVSEERRKA---VIDYVQRLIRNY---LGCEVFPFGSVPLKTYLPD---GDIDLTAF 104 (712)
Q Consensus 34 i~~~~w~~le~ei~e~v~~I~PT~eE~~~R~~---VI~~Vq~lI~~~---p~a~V~~FGS~~tGL~LP~---SDIDL~V~ 104 (712)
.+.....++.+++..-+.-.+|.+.+...|.. ++..|.++++++ -.-....||||.+-+--|+ +|||+.=.
T Consensus 129 ~d~~s~~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT 208 (479)
T 3er9_B 129 YNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT 208 (479)
T ss_dssp -CGGGGHHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES
T ss_pred echHHHHHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee
Confidence 34444444433333333334555544555654 477777777754 4678999999998886665 99999765
Q ss_pred c
Q 005149 105 G 105 (712)
Q Consensus 105 ~ 105 (712)
.
T Consensus 209 N 209 (479)
T 3er9_B 209 N 209 (479)
T ss_dssp S
T ss_pred c
Confidence 3
No 27
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=23.92 E-value=70 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHHHHHHHHHh-hcCCceEEeeccccCCCCCCCCceEEeecCCcc-hhHHHHHHHHHHHH
Q 005149 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALANDVCSVLER 123 (712)
Q Consensus 66 VI~~Vq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~-~e~l~~~V~~iL~~ 123 (712)
+.+.|.+.++. -++++|.+-|||.-|--. .+|||++|..+... ...+...|...|.+
T Consensus 155 ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~ 213 (335)
T 2bcq_A 155 IEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQ 213 (335)
T ss_dssp HHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHh
Confidence 34445555553 367999999999988766 67999999977532 22344445444443
Done!