Query 005150
Match_columns 711
No_of_seqs 274 out of 2037
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 18:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 4E-157 9E-162 1245.5 31.9 611 78-698 70-698 (785)
2 PTZ00130 heat shock protein 90 100.0 7E-151 1E-155 1297.9 59.2 609 78-697 63-709 (814)
3 PTZ00272 heat shock protein 83 100.0 2E-150 4E-155 1295.6 58.9 604 81-697 3-621 (701)
4 KOG0019 Molecular chaperone (H 100.0 1E-149 3E-154 1223.7 43.3 568 78-700 32-602 (656)
5 COG0326 HtpG Molecular chapero 100.0 3E-148 6E-153 1238.1 52.6 573 79-698 3-580 (623)
6 PRK05218 heat shock protein 90 100.0 8E-131 2E-135 1132.4 57.0 564 79-697 2-569 (613)
7 PRK14083 HSP90 family protein; 100.0 3E-119 7E-124 1027.5 52.4 529 82-697 2-548 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 3E-112 6E-117 960.7 35.5 427 268-698 1-449 (531)
9 COG0323 MutL DNA mismatch repa 99.9 7.5E-22 1.6E-26 229.1 13.5 293 89-476 4-334 (638)
10 PRK00095 mutL DNA mismatch rep 99.7 3.1E-17 6.7E-22 191.1 17.8 266 91-446 5-298 (617)
11 TIGR00585 mutl DNA mismatch re 99.7 5.6E-17 1.2E-21 174.6 17.6 232 98-419 17-266 (312)
12 PF13589 HATPase_c_3: Histidin 99.6 3.1E-16 6.8E-21 149.1 8.9 104 101-233 1-106 (137)
13 COG1389 DNA topoisomerase VI, 99.3 4.5E-12 9.8E-17 137.7 11.5 157 101-283 30-200 (538)
14 KOG1979 DNA mismatch repair pr 99.3 3.9E-11 8.4E-16 133.2 12.8 170 88-294 7-194 (694)
15 PRK04184 DNA topoisomerase VI 99.1 5E-10 1.1E-14 127.4 13.4 152 105-284 38-201 (535)
16 TIGR01052 top6b DNA topoisomer 99.0 1.2E-09 2.7E-14 123.1 12.7 150 105-284 30-192 (488)
17 PRK14868 DNA topoisomerase VI 99.0 1.3E-09 2.9E-14 126.5 12.1 147 106-284 49-207 (795)
18 PRK14867 DNA topoisomerase VI 98.9 8.1E-09 1.8E-13 119.8 12.6 149 106-284 39-198 (659)
19 PRK05559 DNA topoisomerase IV 98.9 2E-08 4.3E-13 117.8 15.6 153 103-284 37-199 (631)
20 KOG1978 DNA mismatch repair pr 98.9 9.2E-09 2E-13 117.2 11.5 157 95-284 12-179 (672)
21 TIGR01055 parE_Gneg DNA topois 98.7 3E-08 6.4E-13 116.0 8.8 158 104-294 31-203 (625)
22 smart00433 TOP2c Topoisomerase 98.7 8.6E-08 1.9E-12 111.8 11.7 155 106-292 4-170 (594)
23 PRK05644 gyrB DNA gyrase subun 98.4 5.8E-07 1.3E-11 105.6 9.6 156 105-292 39-204 (638)
24 TIGR01059 gyrB DNA gyrase, B s 98.4 7E-07 1.5E-11 105.5 9.9 157 105-292 32-197 (654)
25 PRK14939 gyrB DNA gyrase subun 98.3 1.2E-06 2.6E-11 103.9 9.5 155 105-294 39-208 (756)
26 PF02518 HATPase_c: Histidine 98.3 1.4E-06 3E-11 78.9 6.3 80 106-214 8-87 (111)
27 KOG1977 DNA mismatch repair pr 97.8 8.6E-06 1.9E-10 92.8 3.2 126 104-260 22-149 (1142)
28 TIGR01058 parE_Gpos DNA topois 97.4 0.00052 1.1E-08 80.9 10.1 160 106-294 37-206 (637)
29 cd00075 HATPase_c Histidine ki 97.1 0.0017 3.7E-08 55.5 7.4 86 106-220 3-92 (103)
30 smart00387 HATPase_c Histidine 97.1 0.0016 3.5E-08 56.5 7.4 80 106-214 8-87 (111)
31 PRK10604 sensor protein RstB; 96.9 0.0015 3.3E-08 73.4 7.1 78 106-213 322-399 (433)
32 PRK09470 cpxA two-component se 96.9 0.0023 4.9E-08 71.6 7.6 50 106-171 356-405 (461)
33 PRK10755 sensor protein BasS/P 96.8 0.0022 4.7E-08 69.8 6.9 76 106-213 250-325 (356)
34 PRK10549 signal transduction h 96.8 0.0024 5.2E-08 71.7 7.2 80 106-213 355-434 (466)
35 TIGR02916 PEP_his_kin putative 96.7 0.0022 4.9E-08 76.5 6.6 74 106-212 582-655 (679)
36 PRK11006 phoR phosphate regulo 96.7 0.0031 6.7E-08 70.7 6.9 79 106-212 320-398 (430)
37 TIGR01386 cztS_silS_copS heavy 96.7 0.0032 6.9E-08 70.2 7.0 79 106-212 356-434 (457)
38 TIGR02938 nifL_nitrog nitrogen 96.7 0.0038 8.2E-08 69.7 7.6 77 106-211 390-468 (494)
39 PRK11100 sensory histidine kin 96.6 0.0055 1.2E-07 68.5 8.0 51 106-170 371-421 (475)
40 PLN03128 DNA topoisomerase 2; 96.4 0.0099 2.2E-07 74.1 8.9 133 105-261 54-194 (1135)
41 TIGR02966 phoR_proteo phosphat 96.3 0.0074 1.6E-07 63.7 6.3 50 107-170 233-282 (333)
42 PRK15347 two component system 96.3 0.0072 1.6E-07 74.1 7.0 50 106-170 516-565 (921)
43 PRK15053 dpiB sensor histidine 96.2 0.011 2.5E-07 68.0 8.1 79 107-212 436-514 (545)
44 PRK10815 sensor protein PhoQ; 96.2 0.008 1.7E-07 69.0 6.7 49 106-170 381-429 (485)
45 TIGR02956 TMAO_torS TMAO reduc 96.2 0.011 2.4E-07 73.0 8.0 84 106-220 582-670 (968)
46 PHA02569 39 DNA topoisomerase 96.1 0.009 2E-07 70.2 6.7 159 105-294 47-222 (602)
47 PRK10364 sensor protein ZraS; 96.1 0.013 2.8E-07 66.2 7.8 51 106-170 351-401 (457)
48 PRK11086 sensory histidine kin 96.1 0.017 3.7E-07 66.0 8.7 54 106-171 436-489 (542)
49 PLN03237 DNA topoisomerase 2; 96.1 0.013 2.8E-07 73.8 8.1 164 105-296 79-260 (1465)
50 PTZ00109 DNA gyrase subunit b; 96.0 0.0092 2E-07 71.9 6.1 167 105-294 131-356 (903)
51 PTZ00108 DNA topoisomerase 2-l 96.0 0.015 3.2E-07 73.5 8.1 134 105-261 59-202 (1388)
52 COG0187 GyrB Type IIA topoisom 96.0 0.018 3.9E-07 66.6 8.0 163 103-295 36-210 (635)
53 PRK11466 hybrid sensory histid 96.0 0.014 3E-07 71.8 7.6 82 106-220 564-649 (914)
54 PRK09467 envZ osmolarity senso 96.0 0.014 3.1E-07 64.9 7.1 49 107-171 335-383 (435)
55 PRK09303 adaptive-response sen 95.8 0.021 4.5E-07 63.4 7.6 77 106-212 275-352 (380)
56 PRK11360 sensory histidine kin 95.8 0.017 3.7E-07 66.1 6.9 50 107-170 504-554 (607)
57 PRK11091 aerobic respiration c 95.6 0.029 6.3E-07 67.9 8.2 88 106-221 401-493 (779)
58 PRK10337 sensor protein QseC; 95.5 0.025 5.3E-07 63.4 6.8 47 107-171 356-402 (449)
59 PRK10841 hybrid sensory kinase 95.5 0.026 5.6E-07 69.9 7.4 78 106-212 565-642 (924)
60 PRK10618 phosphotransfer inter 95.5 0.032 6.8E-07 68.8 7.8 51 106-171 568-621 (894)
61 PRK11107 hybrid sensory histid 95.4 0.029 6.3E-07 68.7 7.5 87 106-221 411-506 (919)
62 TIGR03785 marine_sort_HK prote 95.3 0.032 7E-07 67.1 7.2 80 106-213 600-679 (703)
63 PRK13837 two-component VirA-li 95.0 0.07 1.5E-06 65.3 9.1 82 106-221 563-663 (828)
64 COG4191 Signal transduction hi 94.6 0.052 1.1E-06 62.6 6.0 50 110-171 504-553 (603)
65 PRK04069 serine-protein kinase 94.6 0.037 8E-07 54.1 4.2 88 105-219 44-131 (161)
66 TIGR01925 spIIAB anti-sigma F 94.6 0.11 2.4E-06 48.7 7.2 47 105-162 41-87 (137)
67 COG0642 BaeS Signal transducti 94.5 0.043 9.2E-07 56.9 4.7 49 106-169 231-279 (336)
68 COG3290 CitA Signal transducti 94.4 0.071 1.5E-06 61.0 6.5 76 106-211 430-505 (537)
69 PRK10490 sensor protein KdpD; 94.3 0.072 1.6E-06 65.9 6.6 51 106-170 781-831 (895)
70 PRK09835 sensor kinase CusS; P 94.0 0.082 1.8E-06 59.5 5.9 52 106-171 378-429 (482)
71 PRK09959 hybrid sensory histid 93.9 0.084 1.8E-06 67.0 6.4 50 106-170 831-885 (1197)
72 PRK03660 anti-sigma F factor; 93.5 0.29 6.2E-06 46.4 7.8 48 105-163 41-88 (146)
73 TIGR01924 rsbW_low_gc serine-p 93.4 0.13 2.8E-06 50.3 5.3 88 105-219 44-131 (159)
74 PRK10547 chemotaxis protein Ch 93.2 0.32 7E-06 58.1 9.2 55 108-168 390-448 (670)
75 PF13581 HATPase_c_2: Histidin 92.9 0.15 3.3E-06 46.9 4.8 81 105-217 33-113 (125)
76 PRK13557 histidine kinase; Pro 92.0 0.24 5.2E-06 56.4 6.0 21 150-170 325-345 (540)
77 COG5000 NtrY Signal transducti 91.2 0.47 1E-05 55.1 6.9 71 79-170 588-660 (712)
78 KOG0787 Dehydrogenase kinase [ 91.1 0.94 2E-05 49.9 8.8 122 105-266 262-383 (414)
79 COG3920 Signal transduction hi 90.6 0.42 9E-06 49.4 5.5 48 106-164 125-174 (221)
80 PRK11644 sensory histidine kin 90.4 0.26 5.7E-06 56.8 4.2 43 107-164 414-456 (495)
81 PRK10600 nitrate/nitrite senso 90.2 0.31 6.8E-06 56.9 4.7 43 107-164 473-515 (569)
82 COG2172 RsbW Anti-sigma regula 88.8 1.5 3.2E-05 42.5 7.3 86 105-223 42-130 (146)
83 PRK13560 hypothetical protein; 88.7 0.45 9.7E-06 57.1 4.6 45 107-164 715-762 (807)
84 COG3850 NarQ Signal transducti 88.5 0.52 1.1E-05 54.0 4.6 43 107-164 485-527 (574)
85 PRK11073 glnL nitrogen regulat 88.3 0.71 1.5E-05 49.7 5.4 50 106-170 240-301 (348)
86 KOG0019 Molecular chaperone (H 88.1 0.021 4.6E-07 65.5 -6.7 203 480-692 375-580 (656)
87 COG4585 Signal transduction hi 87.5 0.51 1.1E-05 52.0 3.8 48 105-167 281-328 (365)
88 COG2205 KdpD Osmosensitive K+ 83.7 3.8 8.3E-05 49.5 8.5 57 105-175 777-833 (890)
89 PRK10935 nitrate/nitrite senso 79.8 1.7 3.6E-05 50.3 3.9 42 107-163 475-517 (565)
90 COG2972 Predicted signal trans 78.9 4.1 8.9E-05 46.6 6.6 56 101-168 348-405 (456)
91 COG4251 Bacteriophytochrome (l 76.7 5.8 0.00013 46.7 6.8 67 139-221 657-729 (750)
92 COG5002 VicK Signal transducti 76.4 3.8 8.3E-05 45.0 5.0 55 140-208 363-419 (459)
93 COG0643 CheA Chemotaxis protei 75.7 2.1 4.5E-05 51.7 3.1 126 107-262 436-572 (716)
94 PRK13559 hypothetical protein; 74.6 3.3 7.1E-05 45.0 4.1 44 107-163 271-318 (361)
95 KOG1845 MORC family ATPases [C 71.9 3.2 6.9E-05 50.0 3.4 97 106-221 149-246 (775)
96 COG4192 Signal transduction hi 71.8 6.1 0.00013 44.8 5.2 54 106-175 567-623 (673)
97 cd03482 MutL_Trans_MutL MutL_T 71.7 6 0.00013 37.0 4.6 79 360-447 6-96 (123)
98 PF01119 DNA_mis_repair: DNA m 70.0 7.6 0.00016 35.9 4.8 91 366-465 9-115 (119)
99 cd03486 MutL_Trans_MLH3 MutL_T 67.9 9.5 0.00021 36.5 5.1 53 356-419 3-56 (141)
100 KOG0355 DNA topoisomerase type 64.0 7.8 0.00017 46.8 4.4 126 105-260 55-192 (842)
101 cd03484 MutL_Trans_hPMS_2_like 57.3 17 0.00038 34.8 4.8 63 379-447 43-115 (142)
102 cd00329 TopoII_MutL_Trans MutL 56.1 25 0.00055 30.7 5.4 52 358-418 4-56 (107)
103 cd03485 MutL_Trans_hPMS_1_like 53.5 23 0.00051 33.3 5.0 92 367-464 15-127 (132)
104 cd00782 MutL_Trans MutL_Trans: 51.2 25 0.00053 32.3 4.6 43 368-419 15-57 (122)
105 cd03483 MutL_Trans_MLH1 MutL_T 50.1 23 0.00051 33.2 4.4 92 366-466 14-124 (127)
106 COG3851 UhpB Signal transducti 46.5 24 0.00051 39.2 4.2 28 136-163 428-455 (497)
107 KOG1845 MORC family ATPases [C 45.0 14 0.00031 44.7 2.5 53 152-223 2-55 (775)
108 COG4564 Signal transduction hi 40.3 31 0.00067 37.9 3.8 55 100-167 352-408 (459)
109 PF04122 CW_binding_2: Putativ 37.7 89 0.0019 27.2 5.9 55 537-594 24-79 (92)
110 COG3852 NtrB Signal transducti 36.7 70 0.0015 35.0 5.8 58 106-167 244-305 (363)
111 COG3275 LytS Putative regulato 29.1 64 0.0014 37.2 4.2 50 105-164 458-507 (557)
112 cd03567 VHS_GGA VHS domain fam 22.8 1E+02 0.0022 29.7 3.8 52 447-502 79-139 (139)
113 COG2865 Predicted transcriptio 22.6 1.3E+02 0.0029 34.7 5.3 101 83-211 238-356 (467)
114 smart00481 POLIIIAc DNA polyme 21.8 1.2E+02 0.0026 24.7 3.6 57 514-572 3-61 (67)
115 COG1578 Uncharacterized conser 20.1 6E+02 0.013 27.4 9.0 26 567-592 153-183 (285)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-157 Score=1245.49 Aligned_cols=611 Identities=51% Similarity=0.896 Sum_probs=561.2
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
+.+++|.||++++|||++|+|+||.|++|||||||+||+||++|+|+++++++..+....++.|+|..|+.++.|.|.|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 35789999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCC-CCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCC
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS 236 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~-~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~ 236 (711)
|+|||++||+++|||||+|||++|+++++...+.+ .-..+||||||||||+|+|||+|+|+|++++ +.+|.|++++.
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNd-D~QyiWESdan- 227 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHND-DSQYIWESDAN- 227 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCC-ccceeeeccCc-
Confidence 99999999999999999999999999998633221 1237999999999999999999999999987 89999999986
Q ss_pred ceEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeeccccccccc--ccCCCCCCC--
Q 005150 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVE--EEEKPEEGE-- 312 (711)
Q Consensus 237 ~~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~--~~~~~~~~~-- 312 (711)
.|.|..++ +++..++||.|+|+||+++. +|+++..++++|++||+||+|||++|..++++.+++ ++++.+|.+
T Consensus 228 ~FsvseDp--rg~tL~RGt~ItL~LkeEA~-dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~e 304 (785)
T KOG0020|consen 228 SFSVSEDP--RGNTLGRGTEITLYLKEEAG-DYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTE 304 (785)
T ss_pred ceeeecCC--CCCcccCccEEEEEehhhhh-hhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccccccccccccc
Confidence 89999887 78889999999999999999 999999999999999999999999999997655544 433222211
Q ss_pred ----CCccc-cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEE
Q 005150 313 ----EQPEG-EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (711)
Q Consensus 313 ----~~~~~-~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll 387 (711)
.++++ ++++|.|++.+++|+|+++|+.+|||+|+|++|+++||..||+++.+++.+|++|+||++||.++|++||
T Consensus 305 d~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiL 384 (785)
T KOG0020|consen 305 DKEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSIL 384 (785)
T ss_pred chhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEE
Confidence 12222 3347889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcccccc-ccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHH
Q 005150 388 YIPGMGPLNNEEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVR 466 (711)
Q Consensus 388 ~iP~~~p~~~~~~~~-~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~ 466 (711)
|+|+.+|.++|+.+. ..+.+|+|||+||||+|++. +++|.||+||||||||+|||||||||+||++++|++|+|.|++
T Consensus 385 yVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvr 463 (785)
T KOG0020|consen 385 YVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVR 463 (785)
T ss_pred EeCCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999997666 56789999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccChHHHHH-HHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEe
Q 005150 467 KTFDMIQDISQSENKEDYKK-FWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLA 545 (711)
Q Consensus 467 k~~~~l~~la~~~d~e~y~~-f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~ 545 (711)
|+++||++++. ++|+. ||++||.+||+|++||+.||.+||+||||+||+++.+.+||++|++|||+.|+.|||++
T Consensus 464 K~LDmikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~Iyyma 539 (785)
T KOG0020|consen 464 KVLDMIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMA 539 (785)
T ss_pred HHHHHHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEec
Confidence 99999999992 57776 99999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCHHHHhhChhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHH
Q 005150 546 TDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWI 623 (711)
Q Consensus 546 ~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~ 623 (711)
|.|+.+++.|||+|.+.++||||||+++|+||||||.|.+|+|++|++|.++++.+++.+..+. +..+++|++|+.|+
T Consensus 540 Gssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~ 619 (785)
T KOG0020|consen 540 GSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWL 619 (785)
T ss_pred CCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877655443 56788999999999
Q ss_pred HH-HhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcC---CCCcccccCCCceEEECCCChHHHHHhhcc
Q 005150 624 KQ-QLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALG---DTSSLEFMRGRRILEINPDHPIVKDLNVRP 698 (711)
Q Consensus 624 k~-~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~---~~~~~~~~~~k~~LEINp~HpLI~~L~~~~ 698 (711)
|. +|.++|+++++|.||++|||++|++.+|||.+|+|||++|+.+ |.....|+.++++|||||.||||+.|+.+.
T Consensus 620 k~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri 698 (785)
T KOG0020|consen 620 KDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRI 698 (785)
T ss_pred HhhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHh
Confidence 97 5679999999999999999999999999999999999999976 334445688999999999999999998653
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=6.7e-151 Score=1297.95 Aligned_cols=609 Identities=45% Similarity=0.767 Sum_probs=544.1
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
.+.++|+||+|+++||+||+++|||+|+||||||||||+|||+|+||++++++.+..+...+.|+|..|.++++|+|+||
T Consensus 63 ~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 63 SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999888777889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
|||||++||.++|||||+|||+.|+++++. .+.+..+||||||||||+|||||+|+|+||+++ +.+|.|++.|++.
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~---~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~ 218 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAK 218 (814)
T ss_pred CCCCCHHHHHHHhhhhcccccHHHHHHhhc---cCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCc
Confidence 999999999999999999999999998873 234578999999999999999999999999987 7789999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCC--C-CCC--
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP--E-EGE-- 312 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~--~-~~~-- 312 (711)
|+|.+.+ .+...++||+|+|||++++. +|++.++|+++|++||.||+|||++++.+++.++++++++. + +++
T Consensus 219 y~I~e~~--~~~~~~rGT~I~LhLked~~-efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T PTZ00130 219 FTIYKDP--RGSTLKRGTRISLHLKEDAT-NLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYD 295 (814)
T ss_pred EEEEECC--CCCCCCCCcEEEEEECCchh-hhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccc
Confidence 9999874 23356899999999999998 99999999999999999999999998755444333221100 0 110
Q ss_pred --CCcc-ccccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEe
Q 005150 313 --EQPE-GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYI 389 (711)
Q Consensus 313 --~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~i 389 (711)
++++ ++.+++.|++++++++|+.+|+.+|||+|+++++++|+|++||+.+++++++||+|+||++||+++|+|||||
T Consensus 296 ~~e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYI 375 (814)
T PTZ00130 296 SVKVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYI 375 (814)
T ss_pred cccccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEe
Confidence 0111 1223556777778889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHH
Q 005150 390 PGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTF 469 (711)
Q Consensus 390 P~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~ 469 (711)
|+.+|+.++. .....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++
T Consensus 376 P~~ap~~~~~-~~~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil 453 (814)
T PTZ00130 376 PSRAPSINDH-LFTKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKIL 453 (814)
T ss_pred cCCCccchhh-hhhccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHH
Confidence 9999997764 2235789999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc----------------------------cChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCC
Q 005150 470 DMIQDISQS----------------------------ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSE 521 (711)
Q Consensus 470 ~~l~~la~~----------------------------~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~ 521 (711)
++|++++++ ++|++|.+||++||.+||+||++|+.|+++|++||||+||.++
T Consensus 454 ~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~~ 533 (814)
T PTZ00130 454 DTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLHP 533 (814)
T ss_pred HHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCCC
Confidence 999999841 5789999999999999999999999999999999999999753
Q ss_pred CceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCC
Q 005150 522 EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLEL 601 (711)
Q Consensus 522 ~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l 601 (711)
+++||+||++||+++|+.|||+++++++++++|||+|.|+++|||||||++||||+||++|++|+|++|++|+++++++
T Consensus 534 -~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~ 612 (814)
T PTZ00130 534 -KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITF 612 (814)
T ss_pred -CccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCC
Q 005150 602 GDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGR 679 (711)
Q Consensus 602 ~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k 679 (711)
+..++++. ++.++++++|++|++++|+++|.+|++|+||++||||||++++|++++|+|||++|.+ ++.+..++.++
T Consensus 613 ~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~~~~~k 691 (814)
T PTZ00130 613 ELTEDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIKAMSGQ 691 (814)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccccccCC
Confidence 54332211 3345679999999999999999999999999999999999999999999999999863 22222456689
Q ss_pred ceEEECCCChHHHHHhhc
Q 005150 680 RILEINPDHPIVKDLNVR 697 (711)
Q Consensus 680 ~~LEINp~HpLI~~L~~~ 697 (711)
++|||||+||||++|+.+
T Consensus 692 ~iLEINp~Hpii~~L~~~ 709 (814)
T PTZ00130 692 KILEINPDHPIMIDLLKR 709 (814)
T ss_pred eEEEECCCCHHHHHHHHH
Confidence 999999999999999743
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.9e-150 Score=1295.60 Aligned_cols=604 Identities=49% Similarity=0.857 Sum_probs=543.6
Q ss_pred ceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCC
Q 005150 81 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG 160 (711)
Q Consensus 81 e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiG 160 (711)
|+|+||||+++||+||+|+|||++++|||||||||+|||+|+||.+++++.+......+.|+|..|.+..+|+|+|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999887666778999999988899999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEE
Q 005150 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (711)
Q Consensus 161 Mt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i 240 (711)
||++||.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|+||+++ +.+|.|+++|++.|+|
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~----~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~-~~~~~W~s~~~g~y~i 157 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEA----GGDMSMIGQFGVGFYSAYLVADRVTVTSKNNS-DESYVWESSAGGTFTI 157 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhc----cCCccccCCCCcceEEEEEeccEEEEEEecCC-CceEEEEECCCCcEEE
Confidence 999999999999999999999988762 34678999999999999999999999999876 5799999999999999
Q ss_pred EeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCC------CCCCC--
Q 005150 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEK------PEEGE-- 312 (711)
Q Consensus 241 ~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~------~~~~~-- 312 (711)
.+.+ ....++||+|+|||++++. +|++.++|+++|++||.|++|||+++.+++++.+++++++ +++++
T Consensus 158 ~~~~---~~~~~~GT~I~L~Lk~d~~-ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (701)
T PTZ00272 158 TSTP---ESDMKRGTRITLHLKEDQM-EYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEP 233 (701)
T ss_pred EeCC---CCCCCCCCEEEEEECCchH-HhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccc
Confidence 8864 3345899999999999998 9999999999999999999999999865544433322110 00111
Q ss_pred ---CCcc--ccccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEE
Q 005150 313 ---EQPE--GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (711)
Q Consensus 313 ---~~~~--~~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll 387 (711)
++++ ++++++.++++++.++|+++|+.+|||+|+++++++++|++||++++++|.+||+|+||++||+++|+|||
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~ll 313 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIM 313 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEE
Confidence 1111 12234567777788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHH
Q 005150 388 YIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRK 467 (711)
Q Consensus 388 ~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k 467 (711)
|||+.+|+++|+ .....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|
T Consensus 314 yiP~~~~~~~~~-~~~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~k 391 (701)
T PTZ00272 314 FVPKRAPFDMFE-PNKKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKK 391 (701)
T ss_pred EeCCCCccchhh-hhhccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHH
Confidence 999999999875 2335789999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecC
Q 005150 468 TFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD 547 (711)
Q Consensus 468 ~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~ 547 (711)
++++|+++| +++++|++||++||.+||+|+++|++|+++|++||||+||.++++++||+||++|||++|+.|||++|+
T Consensus 392 i~~~l~~la--~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~ 469 (701)
T PTZ00272 392 CLEMFDEVA--ENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGD 469 (701)
T ss_pred HHHHHHHHh--hCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCC
Confidence 999999999 468999999999999999999999999999999999999986678999999999999999999999999
Q ss_pred CHHHHhhChhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHH
Q 005150 548 SLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQ 625 (711)
Q Consensus 548 s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~ 625 (711)
|++++++|||+|.|+++|||||||+||||||||++|++|+|++|++|+++++++++.++++. ++.++++++|++|+++
T Consensus 470 s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~ 549 (701)
T PTZ00272 470 SKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKE 549 (701)
T ss_pred CHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764332211 3445689999999999
Q ss_pred HhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 626 QLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 626 ~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
+|+++|.+|++|+||+++|||||++++|++++|+|||++|++++..+..++.++++|||||+||||++|+++
T Consensus 550 ~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~ 621 (701)
T PTZ00272 550 VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRR 621 (701)
T ss_pred HhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999876443333456789999999999999999864
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-149 Score=1223.69 Aligned_cols=568 Identities=49% Similarity=0.815 Sum_probs=543.9
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
.+.|+|.|||++++||++++|++||++++||||||+||+||++|+||.++++|+.+ ..++.|+|++++++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 45689999999999999999999999999999999999999999999999999876 6789999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
|||||++||.++|||||+|||++|++.+++ ++.+.+.|||||+||||+|+||++|+|+||+++ +.+|.|++.+++.
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealke---a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~-~e~y~Wes~~~gs 185 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKE---AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPA-DEGLQWTSNGRGS 185 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHh---cccchhhhhhcccchhhhhhhhheeEEeeccCC-CcceeeecCCCCc
Confidence 999999999999999999999999999984 467888999999999999999999999999988 5599999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
|++...+ ...+||+|+||||++.. +|+++.+|+++|++||.|+.|||+++++
T Consensus 186 ~~v~~~~-----~~~rGTki~l~lKe~~~-ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------- 237 (656)
T KOG0019|consen 186 YEIAEAS-----GLRTGTKIVIHLKEGDC-EFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------- 237 (656)
T ss_pred eEEeecc-----CccccceEEeeehhhhh-hhccHhHHHHHHhhccccccccchhhhh----------------------
Confidence 9999875 48999999999999998 9999999999999999999999999884
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
.+|..+|||+|+|.+|+.|+|.+||++++++|++|+++.||++||+++||+++|||.++|+++
T Consensus 238 -----------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~l 300 (656)
T KOG0019|consen 238 -----------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSM 300 (656)
T ss_pred -----------------hhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchh
Confidence 299999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
|++ +.+.+||+|||+||||+|+|. +++|+||+||+|||||+|||||+|||+||+++++++||+.|++|++++|.+++
T Consensus 301 F~~-~kk~n~i~Ly~rrv~I~d~~~-~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a- 377 (656)
T KOG0019|consen 301 FDM-RKKKNGIKLYARRVLITDDAG-DLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLA- 377 (656)
T ss_pred hhh-hhccCceEEEEEEEecCchhH-HHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 984 478899999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHh-hcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhCh
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKR-LAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~-l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP 556 (711)
+|+|+|++||++||++||+|+++|.+|+++ +++||||+||+++++++||++|+.||+++|+.|||++++|+.++++||
T Consensus 378 -~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp 456 (656)
T KOG0019|consen 378 -KDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSP 456 (656)
T ss_pred -hhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcch
Confidence 799999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEE
Q 005150 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKV 634 (711)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V 634 (711)
|+|.++++|+|||||++||||+++++|.+|+|++|++|+++++++++.++++. ++.+++|+.||.|||+.|+++|++|
T Consensus 457 ~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV 536 (656)
T KOG0019|consen 457 YYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKV 536 (656)
T ss_pred HHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 99999999999999999999999999999999999999999999985544333 5667799999999999999999999
Q ss_pred EEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhcccc
Q 005150 635 QVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVRPLH 700 (711)
Q Consensus 635 ~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~~~~ 700 (711)
.+|+||+++||||+++++||+++|+|+|+||+..+++..++|.++++|||||+||||+.|.++...
T Consensus 537 ~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~ 602 (656)
T KOG0019|consen 537 TVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRES 602 (656)
T ss_pred EecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988999999999999999999999977643
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-148 Score=1238.09 Aligned_cols=573 Identities=47% Similarity=0.786 Sum_probs=535.9
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..+++.||+|+++|+++|+|+|||||+||||||||||+|||+|+||.++++|.......+++|+|.+|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 35789999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~ 238 (711)
||||++|++++|||||+|||++|++.+.+. . ++..+||||||||||||||||+|+|+||+++++.+++|+|+|+|.|
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~--~-~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~y 159 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSED--Q-KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEY 159 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccc--c-ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCce
Confidence 999999999999999999999999998752 2 5789999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCC-CCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 239 YVIREETDPEKLLK-RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 239 ~i~~~~~~~~~~~~-~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
+|.+++ ..+ +||+|+|||+++.. +|+++++|+++|++||.||++||++.+++.. +
T Consensus 160 tv~~~~-----~~~~~GT~I~L~Lk~~e~-efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~------~------------ 215 (623)
T COG0326 160 TVEDID-----KEPRRGTEITLHLKEEED-EFLEEWRLREIVKKYSDHIAYPIYIEGEKEK------D------------ 215 (623)
T ss_pred EEeecc-----CCCCCCcEEEEEECCchH-HHhhhhHHHHHHHHHhcccccceEEeeeccc------c------------
Confidence 999985 344 69999999999988 9999999999999999999999999765311 0
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
+...+|+.+|.++|+|+|+++++++++|++||+++.++|.+||.|+|+++||.+++.++||||+.+||++
T Consensus 216 ----------~~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl 285 (623)
T COG0326 216 ----------EEVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDL 285 (623)
T ss_pred ----------ccchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCccc
Confidence 0034789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
|. +..++|++||||||||+|+|. +|||+||+||+|||||+|||||||||+||+|++++.||+.|++|++++|++||
T Consensus 286 ~~--~~~k~glkLYv~rVfI~Dd~~-~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La- 361 (623)
T COG0326 286 FR--RDRKRGLKLYVNRVFIMDDAE-DLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLA- 361 (623)
T ss_pred cc--ccccCCcEEEEeeeEEeCChh-hhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 86 556899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeec-cCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhCh
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTS-KSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts-~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP 556 (711)
+++||+|.+||++||.+||+|+++|++|+++|++||||.|| .++.+++||+||++|||++|+.|||++|+|..++++||
T Consensus 362 ~~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP 441 (623)
T COG0326 362 KDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSP 441 (623)
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCc
Confidence 68899999999999999999999999999999999999995 45679999999999999999999999999999999999
Q ss_pred hHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhH--h-hHhhHHHHHHHHHHHHHHhCCceeE
Q 005150 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEV--K-ERETKQEFNLLCDWIKQQLGDKVAK 633 (711)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~--~-~~~~~~~~~~L~~~~k~~L~~kV~~ 633 (711)
++|.++++|||||+|+|+||+++|..+.+|+|++|++|+++++++....++ . .++.+.+|++|++++|+.|+++|.+
T Consensus 442 ~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~ 521 (623)
T COG0326 442 HLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKD 521 (623)
T ss_pred hHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCccce
Confidence 999999999999999999999999999999999999999999987665433 2 2566778999999999999999999
Q ss_pred EEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhcc
Q 005150 634 VQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVRP 698 (711)
Q Consensus 634 V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~~ 698 (711)
|++|+||+++|||++.+..+++.+|+|+|++|++.. ...+++|||||+||||++|....
T Consensus 522 Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~------~~~k~ilEiNp~h~lv~~L~~~~ 580 (623)
T COG0326 522 VRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEV------PESKKILEINPNHPLVKKLASLE 580 (623)
T ss_pred eEeecccCCCcceeecCccchhHHHHHHHHhccccC------CccccceeeCcccHHHHHHHhcc
Confidence 999999999999999999999999999999977542 25789999999999999998765
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=8.1e-131 Score=1132.37 Aligned_cols=564 Identities=48% Similarity=0.793 Sum_probs=522.1
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..|+++||+|+++|+++|+++||++|++|||||||||+|||+|+||.+++++....+..+++|+|.++.++++|+|+|||
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 81 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNG 81 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECC
Confidence 36899999999999999999999999999999999999999999999999988776677889999999888899999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCC-CCCeEEEEEecCCc
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR-SDKQYVWEAEADSS 237 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~-~~~~~~w~~~~~~~ 237 (711)
+|||++|+..+|++||+||++.|.++++.. ...+..+||+|||||||+||||++|+|.||+.+ ++.++.|.+.+++.
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~--~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~ 159 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGD--QKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGE 159 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhcc--cccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCce
Confidence 999999999999999999999999888531 123568999999999999999999999999987 56799999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
|.+.+.+ ..++||+|+|+|+++++ +|++.++|+++|++||.|+++||+++++
T Consensus 160 ~~i~~~~-----~~~~GT~I~l~Lk~~~~-e~~e~~~i~~li~kys~~l~~PI~~~~~---------------------- 211 (613)
T PRK05218 160 YTIEEIE-----KEERGTEITLHLKEDED-EFLDEWRIRSIIKKYSDFIPVPIKLEKE---------------------- 211 (613)
T ss_pred eEEeECC-----CCCCCcEEEEEECcchh-hhcCHHHHHHHHHHHHhcCCCCEEEecc----------------------
Confidence 9999863 34899999999999998 9999999999999999999999999542
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
+|+++|+++|+|+++++++++++|..||+.+++++.+||+++|++++|++.|+|+||+|+.+|+++
T Consensus 212 --------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~ 277 (613)
T PRK05218 212 --------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDL 277 (613)
T ss_pred --------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccch
Confidence 468899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
++ +...++++||||||||+|+++ +|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++|.+++
T Consensus 278 ~~--~~~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la- 353 (613)
T PRK05218 278 FN--RDRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLA- 353 (613)
T ss_pred hh--hcccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 74 446789999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChh
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPF 557 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~ 557 (711)
++|+++|++||++||.+||+||++|++++++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++||+
T Consensus 354 ~~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~ 432 (613)
T PRK05218 354 KNDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPH 432 (613)
T ss_pred hhCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChH
Confidence 689999999999999999999999999999999999999996 5689999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCC-ch-hHh-hHhhHHHHHHHHHHHHHHhCCceeEE
Q 005150 558 LEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGD-ED-EVK-ERETKQEFNLLCDWIKQQLGDKVAKV 634 (711)
Q Consensus 558 lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~-~~-e~~-~~~~~~~~~~L~~~~k~~L~~kV~~V 634 (711)
+|.|+++|+|||++++|+||+++++|.+|+|++|++|+++++++.+ .+ ++. .+..++++++|++|+++.|+++|++|
T Consensus 433 ~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V 512 (613)
T PRK05218 433 LELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDV 512 (613)
T ss_pred HHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceEE
Confidence 9999999999999999999999999999999999999999998765 11 111 13445689999999999999999999
Q ss_pred EEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 635 QVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 635 ~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
++|+||+++|||+++++++++++|+|+|++|++ .+..++++|||||+||||++|++.
T Consensus 513 ~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~ 569 (613)
T PRK05218 513 RLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADE 569 (613)
T ss_pred EEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhc
Confidence 999999999999999999999999999998752 123378999999999999999864
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=3.1e-119 Score=1027.54 Aligned_cols=529 Identities=24% Similarity=0.349 Sum_probs=463.0
Q ss_pred eecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe-cCCCcEEEEEeCCCC
Q 005150 82 KFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIG 160 (711)
Q Consensus 82 ~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~L~I~DnGiG 160 (711)
.++||+|+++|+++|+++||++|.+|||||||||+|||+++++.. + ..+.+|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 589999999999999999999999999999999999999988642 1 2346888877 777899999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEE
Q 005150 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (711)
Q Consensus 161 Mt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i 240 (711)
||++++.++|++||.||++.|. +. ..+..+||+|||||||+||||++|+|.||+.+++.++.|++.+++.|++
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-----~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i 146 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-----FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSV 146 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-----ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEE
Confidence 9999999999999999987753 21 1346799999999999999999999999998667899999999999999
Q ss_pred EeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCcccccc
Q 005150 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKK 320 (711)
Q Consensus 241 ~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
...+ ....++||+|+|+++++.. +|++++++++++++||.|++|||++++++
T Consensus 147 ~~~~---~~~~~~GT~I~L~l~~d~~-~~~~~~~i~~li~~ys~~i~~pI~l~~~~------------------------ 198 (601)
T PRK14083 147 RKLE---TERAEPGTTVYLRPRPDAE-EWLERETVEELAKKYGSLLPVPIRVEGEK------------------------ 198 (601)
T ss_pred EeCC---CCCCCCCCEEEEEecCchh-hhccHHHHHHHHHHHhccCCCCcccCCce------------------------
Confidence 8752 2356899999999999988 99999999999999999999999996521
Q ss_pred ccccccccccccceeeccCCcccccCCCCCC--HHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEE-eeCCCCCCc
Q 005150 321 TKKTTKTEKYWDWELANETKPIWMRNPKEIE--KDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLY-IPGMGPLNN 397 (711)
Q Consensus 321 ~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~--~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~-iP~~~p~~~ 397 (711)
+.+|+.+|||++++++++ +++|.+||+.+++ .+||+|+|+++||+.. +|+|| +|..+|++
T Consensus 199 -------------~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~- 261 (601)
T PRK14083 199 -------------GGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA- 261 (601)
T ss_pred -------------eeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc-
Confidence 579999999999999998 9999999999998 5999999999999765 78888 69998874
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
..++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|+++|
T Consensus 262 ------~~~~v~LY~~rVfI~d~~~-~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la- 333 (601)
T PRK14083 262 ------ARRKHRVYLKRMLLSEEAE-NLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLA- 333 (601)
T ss_pred ------ccCceEEEeeeeEeecchh-hhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecC-CHHHHhhCh
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD-SLKSAKSAP 556 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~-s~~~~~~sP 556 (711)
++|+++|++||++||.+||+||++|++|+++|++||||+||. +.+||+||++|| +.|||++++ +..+++
T Consensus 334 ~~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~--- 403 (601)
T PRK14083 334 TTDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA--- 403 (601)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH---
Confidence 689999999999999999999999999999999999999997 569999999996 589999996 555554
Q ss_pred hHHHHhhCCcEEEEcCCCchHHHHHHHhh-ccCcceeeccccccC--CCCchhHhhHhhHHHHHHHHHHHHHHhCCceeE
Q 005150 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQT-FNEKKFVDISKEDLE--LGDEDEVKERETKQEFNLLCDWIKQQLGDKVAK 633 (711)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDe~~l~~L~~-~~~~~f~~V~~~~~~--l~~~~e~~~~~~~~~~~~L~~~~k~~L~~kV~~ 633 (711)
+.|+++|+|||+|++||||+++++|.+ |+|++|++|+++++. +...+ ...++++++|++|++++|++++.+
T Consensus 404 --~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~L~~~~~~ 477 (601)
T PRK14083 404 --PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT----PEEELALRPFLAEAREVLAPFGCD 477 (601)
T ss_pred --HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc----hhhHHHHHHHHHHHHHHhCccceE
Confidence 699999999999999999999999998 999999999998773 43222 123567999999999999987444
Q ss_pred E-EEeecCCCCCeEEEeCCCCccHHHHHHHHHH-hcCCCCc--------ccccCCCceEEECCCChHHHHHhhc
Q 005150 634 V-QVSKRLSSSPCVLVSGKFGWSANMERLMKAQ-ALGDTSS--------LEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 634 V-~vS~rL~dsP~~lv~~e~g~s~~Merimkaq-~~~~~~~--------~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
| ++|+||+++|||++.++++ +|+++|++. ++.++.+ ..+..++++|||||+||||++|.+.
T Consensus 478 v~~~s~rl~~~Pa~~v~~e~~---~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~ 548 (601)
T PRK14083 478 VVIRHFEPADLPALYLHDRAA---QHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL 548 (601)
T ss_pred EEEEcCCCCCCCEEEEeCchh---HHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc
Confidence 5 8888999999999998743 566666432 1111111 1233578999999999999999864
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=2.8e-112 Score=960.66 Aligned_cols=427 Identities=53% Similarity=0.915 Sum_probs=368.1
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCC---C--C-CC-------CCcc-------ccccccccccc
Q 005150 268 EFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP---E--E-GE-------EQPE-------GEKKTKKTTKT 327 (711)
Q Consensus 268 e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~---~--~-~~-------~~~~-------~~~~~~~~~~~ 327 (711)
+|+++++|++||++||+|++|||+++.++.+++++++++++ + + ++ ++++ .++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999988777666644411 0 0 00 0111 02245677888
Q ss_pred cccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccc
Q 005150 328 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN 407 (711)
Q Consensus 328 ~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~ 407 (711)
+++++|+++|+.+|||+|+|++|++++|++||+.++++|++||+|+||++||+++|+||||||+.+|+++|.+. ...++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-KKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS-TT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhh-hcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988633 45789
Q ss_pred eEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHH
Q 005150 408 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKF 487 (711)
Q Consensus 408 i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f 487 (711)
|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++|++++ +|+++|++|
T Consensus 160 ikLY~rrVfI~d~~~-~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNFE-ELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSCG-GSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchhh-cccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcE
Q 005150 488 WENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIE 567 (711)
Q Consensus 488 ~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~e 567 (711)
|++||.+||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||++|+|++++++|||+|.|+++|||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCe
Q 005150 568 VLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPC 645 (711)
Q Consensus 568 VL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V~vS~rL~dsP~ 645 (711)
||||++|||++||++|++|+|++|++|+++++++++.++++. +..+++|++|++|+++.||++|.+|++|.||+++||
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa 396 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPA 396 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSE
T ss_pred EEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcc
Confidence 999999999999999999999999999999999877655433 566788999999999999999999999999999999
Q ss_pred EEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhcc
Q 005150 646 VLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVRP 698 (711)
Q Consensus 646 ~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~~ 698 (711)
|++++++|+|++|+|||+||++++..+..++.++++|||||+||||++|+++.
T Consensus 397 ~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~ 449 (531)
T PF00183_consen 397 VLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLV 449 (531)
T ss_dssp EEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHH
T ss_pred eeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhh
Confidence 99999999999999999999987666666778899999999999999999764
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.86 E-value=7.5e-22 Score=229.09 Aligned_cols=293 Identities=19% Similarity=0.257 Sum_probs=205.0
Q ss_pred HHHHHHHHHHccCCC-----chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCC
Q 005150 89 VSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMT 162 (711)
Q Consensus 89 ~~~Ll~lL~~~LYs~-----~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt 162 (711)
|+.|-+.++|+|.++ |.++|||||+||+|| +..+|+|.++.++ ..|+|+|||+||+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA------------------GAt~I~I~ve~gG~~~I~V~DNG~Gi~ 65 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDA------------------GATRIDIEVEGGGLKLIRVRDNGSGID 65 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhccccc------------------CCCEEEEEEccCCccEEEEEECCCCCC
Confidence 667888889999887 899999999999999 5579999988876 5599999999999
Q ss_pred HHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce-EEE
Q 005150 163 KEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVI 241 (711)
Q Consensus 163 ~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~-~i~ 241 (711)
++|+..++.++|+| |+....| -......|..|-+++|+..| .+++|+||..+...++.|...|+..- .+.
T Consensus 66 ~~Dl~la~~rHaTS-------KI~~~~D-L~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~ 136 (638)
T COG0323 66 KEDLPLALLRHATS-------KIASLED-LFRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVK 136 (638)
T ss_pred HHHHHHHHhhhccc-------cCCchhH-HHHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCccccccc
Confidence 99999999999999 3432000 01235788888899999999 77999999877778888988887554 444
Q ss_pred eccCCCCCCCCCCeEEEEE------------ecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCC
Q 005150 242 REETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE 309 (711)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~------------Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~ 309 (711)
+. ..+.||+|++. +|.+.+ || .+|.++|++|+. .++.|.+
T Consensus 137 p~------a~~~GTtVeV~dLF~NtPaRrKflks~~~-E~---~~i~~vv~r~AL-ahp~I~F----------------- 188 (638)
T COG0323 137 PA------AHPVGTTVEVRDLFYNTPARRKFLKSEKT-EF---GHITELINRYAL-AHPDISF----------------- 188 (638)
T ss_pred CC------CCCCCCEEEehHhhccChHHHHhhcccHH-HH---HHHHHHHHHHHh-cCCCeEE-----------------
Confidence 43 45679999998 454444 43 789999999996 4455655
Q ss_pred CCCCCccccccccccccccccccceeeccCC---cccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeEEEE
Q 005150 310 EGEEQPEGEKKTKKTTKTEKYWDWELANETK---PIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRS 385 (711)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~---~iw~r~~~~i~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ 385 (711)
.+.++++ .+-..+.. ....+..+.+++ .+...+..++...+| +++.|
T Consensus 189 ------------------------~l~~~gk~~~~~~~~~~~----~~~~~ri~~i~G~~~~~~~l~i~~~~~~-~~l~G 239 (638)
T COG0323 189 ------------------------SLSHNGKLRIELLKLPGT----GDLEERIAAVYGTEFLKNALPIENEHED-LRLSG 239 (638)
T ss_pred ------------------------EEEECCceeeEEEecCCC----CcHHHHHHHHhCHHHHHhhcccccCCCc-eEEEE
Confidence 3344444 22222211 122235666664 455556667777665 88999
Q ss_pred EEEeeCCCCCCccccccccccceEEEeeeeeeccCCC--------CCCCccc---ccccceeecCCCCCCccc---hHh-
Q 005150 386 VLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFD--------GELFPRY---LSFVKGVVDSDDLPLNVS---REI- 450 (711)
Q Consensus 386 ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~--------~~llP~y---l~Fv~GVVDS~dLplNvS---RE~- 450 (711)
++..|... +.++..+++|||+|+|.|..- .+.||.- +.++.=-+|...+-.||. +|.
T Consensus 240 ~v~~P~~~--------r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVr 311 (638)
T COG0323 240 YVSLPEFT--------RASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVR 311 (638)
T ss_pred Eecccccc--------cCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEE
Confidence 99989532 567789999999999999751 2567652 344444578888888885 332
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHhh
Q 005150 451 LQESRIVRIMRKRLVRKTFDMIQDIS 476 (711)
Q Consensus 451 lQ~~~~l~~I~~~l~~k~~~~l~~la 476 (711)
|.+. +.|.+-|.+.+.+.|.+..
T Consensus 312 f~~~---~~i~~~I~~~I~~~L~~~~ 334 (638)
T COG0323 312 FSDE---RLVHDLIYEAIKEALAQQG 334 (638)
T ss_pred ecCH---HHHHHHHHHHHHHHHHhcc
Confidence 2222 3344455555555555443
No 10
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.74 E-value=3.1e-17 Score=191.12 Aligned_cols=266 Identities=18% Similarity=0.237 Sum_probs=171.1
Q ss_pred HHHHHHHHccCC-----CchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHH
Q 005150 91 RLMDLIVHSLYS-----HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKE 164 (711)
Q Consensus 91 ~Ll~lL~~~LYs-----~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~e 164 (711)
.|-+-+++.|.+ +|..+|+|||+||+||. ...|.|.+..+ ...|+|+|||.||+.+
T Consensus 5 ~L~~~v~~~IaAgevI~~~~svvkElveNsiDAg------------------at~I~v~i~~~g~~~i~V~DnG~Gi~~~ 66 (617)
T PRK00095 5 LLPPQLANQIAAGEVVERPASVVKELVENALDAG------------------ATRIDIEIEEGGLKLIRVRDNGCGISKE 66 (617)
T ss_pred ECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCC------------------CCEEEEEEEeCCeEEEEEEEcCCCCCHH
Confidence 344444444444 58999999999999993 34666666444 3589999999999999
Q ss_pred HHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEecc
Q 005150 165 ELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREE 244 (711)
Q Consensus 165 el~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~ 244 (711)
++...+..+++|.-..+ +.+ ......|..|.|+.|+..|+ +++|.||..+.+.+|.+...++....+.+.
T Consensus 67 ~~~~~~~~~~tsKi~~~-~dl-------~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~- 136 (617)
T PRK00095 67 DLALALARHATSKIASL-DDL-------EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKPA- 136 (617)
T ss_pred HHHHHhhccCCCCCCCh-hHh-------hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceecc-
Confidence 99998888887732211 011 12357899999999999886 899999997766777776655432222222
Q ss_pred CCCCCCCCCCeEEEEE-e---cCCCccCCC-----cHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCc
Q 005150 245 TDPEKLLKRGTQITLY-L---KEDDKYEFS-----EPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQP 315 (711)
Q Consensus 245 ~~~~~~~~~GT~I~L~-L---k~~~~~e~~-----~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (711)
..++||+|++. | -+... .|+ +..+|.+++++|+. +...|.+..
T Consensus 137 -----~~~~GT~V~v~~LF~n~P~Rr-kflk~~~~e~~~i~~~v~~~Al-~~p~i~f~l--------------------- 188 (617)
T PRK00095 137 -----AHPVGTTIEVRDLFFNTPARR-KFLKSEKTELGHIDDVVNRLAL-AHPDVAFTL--------------------- 188 (617)
T ss_pred -----cCCCCCEEEechhhccCcHHH-HhccCcHHHHHHHHHHHHHHhh-cCCCcEEEE---------------------
Confidence 35799999996 1 01111 222 23578999999985 333454422
Q ss_pred cccccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCC
Q 005150 316 EGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGP 394 (711)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p 394 (711)
.++.+.+|..++. ..+.++...+++ .+...+..+....+ .+.+.|++..|...
T Consensus 189 --------------------~~~~~~~~~~~~~----~~~~~~i~~i~g~~~~~~l~~~~~~~~-~~~i~g~is~p~~~- 242 (617)
T PRK00095 189 --------------------THNGKLVLQTRGA----GQLLQRLAAILGREFAENALPIDAEHG-DLRLSGYVGLPTLS- 242 (617)
T ss_pred --------------------EECCEEEEEeCCC----CCHHHHHHHHhCHHhHhheEEEeccCC-CEEEEEEEeCcccc-
Confidence 2233344544432 245667777774 33344555554434 48899988877543
Q ss_pred CCccccccccccceEEEeeeeeeccCC---------CCCCCcc--c-ccccceeecCCCCCCcc
Q 005150 395 LNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPR--Y-LSFVKGVVDSDDLPLNV 446 (711)
Q Consensus 395 ~~~~~~~~~~~~~i~LYv~rv~I~d~~---------~~~llP~--y-l~Fv~GVVDS~dLplNv 446 (711)
+.....+.+|||+++|.+.. . .++|. | ..++.--||...+-.||
T Consensus 243 -------~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~-~~~~~~~~P~~~l~i~~~~~~~DvNv 298 (617)
T PRK00095 243 -------RANRDYQYLFVNGRYVRDKLLNHAIRQAYH-DLLPRGRYPAFVLFLELDPHQVDVNV 298 (617)
T ss_pred -------cCCCcceEEEECCcEecCHHHHHHHHHHHH-HhccCCCCcEEEEEEEeChHhccccc
Confidence 33457889999999998732 2 45553 2 33444456777777787
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=5.6e-17 Score=174.58 Aligned_cols=232 Identities=19% Similarity=0.216 Sum_probs=145.3
Q ss_pred HccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005150 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQS 176 (711)
Q Consensus 98 ~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt~eel~~~l~tIa~S 176 (711)
.....++..+|+|||+||+||. ...|.|.+..++ ..|+|.|||.||+.+++...+....+|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~------------------a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAG------------------ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4556778999999999999993 235555554444 359999999999999998777666655
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEec-CCCCCeEEEEEecCCceEEEeccCCCCCCCCCCe
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKS-PRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~-~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT 255 (711)
-...+. . .......|.+|.|++|...+| +++|.|+. .+.+.++.|...|+ .+.... ....++||
T Consensus 79 k~~~~~-~-------~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~---~~~~~~GT 143 (312)
T TIGR00585 79 KIQSFE-D-------LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEIK---PAPRPVGT 143 (312)
T ss_pred CCCChh-H-------hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCcccc---cccCCCcc
Confidence 322211 0 123467899999999999997 89999998 56577888874433 122211 12457999
Q ss_pred EEEEE-ec---CCCccCCC-----cHHHHHHHHHHhcCC---CCCCeEEeecccccccccccCCCCCCCCCccccccccc
Q 005150 256 QITLY-LK---EDDKYEFS-----EPTRIQGLVKNYSQF---VSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (711)
Q Consensus 256 ~I~L~-Lk---~~~~~e~~-----~~~~i~~li~~ys~f---i~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (711)
+|++. |- +..+ .++ +...+.+++.+|+-. +.|.+...
T Consensus 144 tV~v~~lf~n~p~r~-~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~------------------------------ 192 (312)
T TIGR00585 144 TVEVRDLFYNLPVRR-KFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD------------------------------ 192 (312)
T ss_pred EEEEchhhccCchhh-hhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC------------------------------
Confidence 99997 11 0001 121 135789999999952 23333321
Q ss_pred cccccccccceeeccCCc-ccccCCCCCCHHHHHH-HHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCcccc
Q 005150 324 TTKTEKYWDWELANETKP-IWMRNPKEIEKDEYHE-FYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEI 400 (711)
Q Consensus 324 ~~~~~~~~~~~~~N~~~~-iw~r~~~~i~~eey~~-fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~ 400 (711)
++. ++..... .....+ .+..+++ .....|..++....+.+.++|++.-|...+
T Consensus 193 ---------------~~~~~~~~~~~---~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~v~G~is~p~~~~------ 248 (312)
T TIGR00585 193 ---------------GKKVLQLSTKP---NQSLKERRIRSVFGTAVLSKLFPLLEWEDGDLQLEGFISEPNVTR------ 248 (312)
T ss_pred ---------------CEEEEEEcCCC---CCCHHHHHHHHHhChHhHhhceeeecccCCCEEEEEEEcCccccc------
Confidence 111 1111111 112344 3566664 344555555533344588999777666541
Q ss_pred ccccccc-eEEEeeeeeecc
Q 005150 401 MNPKTKN-IRLYVKRVFISD 419 (711)
Q Consensus 401 ~~~~~~~-i~LYv~rv~I~d 419 (711)
..... +.+|||+++|..
T Consensus 249 --~~~~~~q~ifvNgR~v~~ 266 (312)
T TIGR00585 249 --SRRSGWQFLFINGRPVEL 266 (312)
T ss_pred --CCCCcceEEEECCcEecc
Confidence 12334 899999999865
No 12
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.65 E-value=3.1e-16 Score=149.09 Aligned_cols=104 Identities=33% Similarity=0.480 Sum_probs=78.8
Q ss_pred CCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHHHHhhhhccCch
Q 005150 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTS 179 (711)
Q Consensus 101 Ys~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~ 179 (711)
|+. ..+|+|||+||+||.+. .+.|.|..+ .+...|.|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~----------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT----------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH----------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCC----------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 555 88999999999999864 245666555 3468999999999999999998 7788888543
Q ss_pred hHHHHhhhcccCCCCCccccccccc-cceeeeeeeEEEEEEecCCCCCeEEEEEe
Q 005150 180 KFLKALKENNDLGADNGLIGQFGVG-FYSAFLVAQKVVVSTKSPRSDKQYVWEAE 233 (711)
Q Consensus 180 ~f~~~~~~~~~~~~d~~~IGqFGIG-f~S~F~vad~v~V~Sr~~~~~~~~~w~~~ 233 (711)
.. .+...+|+||+| ++|+|+++++++|+|+..+....+.|...
T Consensus 63 ~~-----------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 63 SE-----------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp HH-----------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred ch-----------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 11 124579999999 88999999999999999886666666543
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.34 E-value=4.5e-12 Score=137.66 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=106.7
Q ss_pred CCCc----hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005150 101 YSHK----EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQ 175 (711)
Q Consensus 101 Ys~~----~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~eel~~~l~tIa~ 175 (711)
|++| ...++|||.||.|||+....+ +.+.|+|... ++-.+++|+|||+|++.+++.+.||++-.
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 5555 468999999999999864433 4456666543 45578999999999999999999999987
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceeeee-----eeEEEEEEecCCCCCeEEEEEecC---CceEEEeccCCC
Q 005150 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLV-----AQKVVVSTKSPRSDKQYVWEAEAD---SSSYVIREETDP 247 (711)
Q Consensus 176 Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~v-----ad~v~V~Sr~~~~~~~~~w~~~~~---~~~~i~~~~~~~ 247 (711)
+++ |. ...+.-||+|||..++.+. +.-|.|+|+..+++.++..+..-| ++-.|......+
T Consensus 99 gSK--fh----------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~ 166 (538)
T COG1389 99 GSK--FH----------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVE 166 (538)
T ss_pred cch--hh----------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhccccc
Confidence 642 31 1235679999998666665 578999999988777776554433 111222111113
Q ss_pred CCCCCCCeEEEEEecCCCccCCCcHHH-HHHHHHHhc
Q 005150 248 EKLLKRGTQITLYLKEDDKYEFSEPTR-IQGLVKNYS 283 (711)
Q Consensus 248 ~~~~~~GT~I~L~Lk~~~~~e~~~~~~-i~~li~~ys 283 (711)
+...+|||+|+|+++..|- . ...+ +.+.+++-+
T Consensus 167 ~~~~~hGT~Vel~~~~~~~-~--~~~qgi~eYlkrta 200 (538)
T COG1389 167 NPGGWHGTRVELELKGVWY-R--AKRQGIYEYLKRTA 200 (538)
T ss_pred CCCCCCceEEEEEecccch-h--hcccCHHHHHHHHh
Confidence 3345799999999998754 1 1123 555555543
No 14
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.25 E-value=3.9e-11 Score=133.21 Aligned_cols=170 Identities=24% Similarity=0.261 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHccCCC-----chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCC
Q 005150 88 EVSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGM 161 (711)
Q Consensus 88 e~~~Ll~lL~~~LYs~-----~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGM 161 (711)
.|++|-+.++|.|.++ |.-+|+|||.|+.|| +...|.|.+-.++ +.|.|.|||.|+
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA------------------~ST~I~V~vk~GGLKLlQisDnG~GI 68 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDA------------------NSTSIDVLVKDGGLKLLQISDNGSGI 68 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccC------------------CCceEEEEEecCCeEEEEEecCCCcc
Confidence 4677777888888776 889999999999999 5668998886665 678999999999
Q ss_pred CHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEE
Q 005150 162 TKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVI 241 (711)
Q Consensus 162 t~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~ 241 (711)
-++||.-...+..+|--.+|.+ +. .....|..|-.+-|+--| -+|+|+|+..++..+|.-... ||...
T Consensus 69 ~reDl~ilCeRftTSKL~kFED-L~-------~lsTyGFRGEALASiShV-A~VtV~TK~~~~~cayrasY~-DGkm~-- 136 (694)
T KOG1979|consen 69 RREDLPILCERFTTSKLTKFED-LF-------SLSTYGFRGEALASISHV-AHVTVTTKTAEGKCAYRASYR-DGKMI-- 136 (694)
T ss_pred chhhhHHHHHHhhhhhcchhHH-HH-------hhhhcCccHHHHhhhhhe-eEEEEEEeecCceeeeEEEee-ccccc--
Confidence 9999998777888884333311 11 234566777778777777 679999999886667765433 33221
Q ss_pred eccCCCCCCCCCCeEEEEE------------ecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEee
Q 005150 242 REETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQ 294 (711)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~------------Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~ 294 (711)
..+ ..-....||.|++. |+.... || .+|..++.+|+-+ +-.|.+..
T Consensus 137 ~~p--KpcAgk~GT~I~vedLFYN~~~Rrkal~~~~E-E~---~ki~dlv~ryAIH-n~~VsFs~ 194 (694)
T KOG1979|consen 137 ATP--KPCAGKQGTIITVEDLFYNMPTRRKALRNHAE-EY---RKIMDLVGRYAIH-NPRVSFSL 194 (694)
T ss_pred cCC--CCccCCCceEEEehHhhccCHHHHHHhcCcHH-HH---HHHHHHHHHHhee-CCCcceEE
Confidence 111 11245799999997 444443 44 6899999999963 23444444
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.11 E-value=5e-10 Score=127.44 Aligned_cols=152 Identities=28% Similarity=0.351 Sum_probs=98.8
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec---CCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f 181 (711)
..+|+|||+||+||++.... ...+.|.+... .+...|+|+|||+||+.+++...|+.+..+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 46799999999999853110 02344555432 22367999999999999999988877643321 1
Q ss_pred HHHhhhcccCCCCCccccccccccceeeeeee-----EEEEEEecCCCCCeEEEEEecC----CceEEEeccCCCCCCCC
Q 005150 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAEAD----SSSYVIREETDPEKLLK 252 (711)
Q Consensus 182 ~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad-----~v~V~Sr~~~~~~~~~w~~~~~----~~~~i~~~~~~~~~~~~ 252 (711)
. ......|++|+|+.++.+++. .+.|.|+..+...++.++..-+ +.-.+.... ......
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~--~~~~~~ 172 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREE--VDWDRW 172 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccc--cCCCCC
Confidence 1 013456999999999988764 5899998765333555544311 111111111 012457
Q ss_pred CCeEEEEEecCCCccCCCcHHHHHHHHHHhcC
Q 005150 253 RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 253 ~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 284 (711)
+||+|.+.++.++. . ...+|.+++++++-
T Consensus 173 ~GT~V~V~l~~~~~-~--~~~~I~e~i~r~Al 201 (535)
T PRK04184 173 HGTRVELEIEGDWY-R--AKQRIYEYLKRTAI 201 (535)
T ss_pred CCEEEEEEECCcCh-h--hHHHHHHHHHHHHH
Confidence 99999999987654 2 25789999999886
No 16
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.04 E-value=1.2e-09 Score=123.06 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=97.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC--C-CcEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--E-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~-~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f 181 (711)
..+++|||.||+||++... ....|.|.+.. . ...|+|+|||.||+.+++...|.....+++
T Consensus 30 ~~VlkELVeNAIDA~~~~g-------------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK--- 93 (488)
T TIGR01052 30 TTVIHELVTNSLDACEEAG-------------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSK--- 93 (488)
T ss_pred HHHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCc---
Confidence 3588999999999985310 11244444432 2 247999999999999999988887543321
Q ss_pred HHHhhhcccCCCCCccccccccccceeeeeee-----EEEEEEecCCCCCeEEEEEe-----cCCceEEEeccCCCCCCC
Q 005150 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAE-----ADSSSYVIREETDPEKLL 251 (711)
Q Consensus 182 ~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad-----~v~V~Sr~~~~~~~~~w~~~-----~~~~~~i~~~~~~~~~~~ 251 (711)
+. ......|++|+|+.++.+++. .++|.|+..+...++..+.. .++. -+...+ .....
T Consensus 94 ---~~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~--~~~~~ 161 (488)
T TIGR01052 94 ---FH------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGE--WNKPG 161 (488)
T ss_pred ---cc------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceee--cCCCC
Confidence 11 123456999999999988875 39999998765555555543 1221 111111 11112
Q ss_pred CCCeEEEEEecCCCccCCCcHHHHHHHHHHhcC
Q 005150 252 KRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 252 ~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 284 (711)
.+||+|++.....+. .+ ...+|.+++++++-
T Consensus 162 ~~GT~V~v~f~~~~~-r~-~k~~i~e~l~~~Al 192 (488)
T TIGR01052 162 WRGTRIELEFKGVSY-RR-SKQGVYEYLRRTAV 192 (488)
T ss_pred CCceEEEEEECCcee-ec-cHHHHHHHHHHHHh
Confidence 589999999765433 21 34789999999886
No 17
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.02 E-value=1.3e-09 Score=126.55 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=98.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC--CcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE--NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
.+|+|||.||+||+.. ....+.|.|.+... ...|+|+|||+||+.+++...|..++++++ |
T Consensus 49 tVLkNLIeNALDAs~~-------------~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f-- 111 (795)
T PRK14868 49 TAVKEAVDNALDATEE-------------AGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--F-- 111 (795)
T ss_pred HHHHHHHHHHHHhCcc-------------cCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--c--
Confidence 5788999999999732 01112455444333 357999999999999999999988875431 1
Q ss_pred HhhhcccCCCCCccccccccccceeeeeee-----EEEEEEecCCCCCeEEEEE--ecCC-ceEE--EeccCCCCCCCCC
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEA--EADS-SSYV--IREETDPEKLLKR 253 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~vad-----~v~V~Sr~~~~~~~~~w~~--~~~~-~~~i--~~~~~~~~~~~~~ 253 (711)
. .....-|+.|+|+.++.+++. .+.|.|+..+...++.|+. +++. .-.| .... ....++
T Consensus 112 --~------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~---~~~~~~ 180 (795)
T PRK14868 112 --H------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT---TWDRPH 180 (795)
T ss_pred --c------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec---ccCCCC
Confidence 1 011345899999999988864 4899999876566765543 3332 1122 1111 124679
Q ss_pred CeEEEEEecCCCccCCCcHHHHHHHHHHhcC
Q 005150 254 GTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 254 GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 284 (711)
||+|++.|..++. ...+|.+++++++.
T Consensus 181 GT~IeV~Lf~N~p----AR~kI~eyl~r~Al 207 (795)
T PRK14868 181 GTRIELEMEANMR----ARQQLHDYIKHTAV 207 (795)
T ss_pred ceEEEEEEEccCc----hhhhHHHHHHHHHh
Confidence 9999999876543 24679999999885
No 18
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.90 E-value=8.1e-09 Score=119.77 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=88.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHHHhhh-hccCchhHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTI-AQSGTSKFLK 183 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~eel~~~l~tI-a~Sgt~~f~~ 183 (711)
..++|||.||+||+.... ..+.+.|.+..... ...|+|.|||.||+.+++...|... +.|
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atS------- 100 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGS------- 100 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccC-------
Confidence 678999999999975210 01223444433222 2459999999999999999988773 332
Q ss_pred HhhhcccCCCCCccccccccccceeeeeeeE-----EEEEEecCCCCCe--EEEEEec--CCceEEEeccCCCCCCCCCC
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQ--YVWEAEA--DSSSYVIREETDPEKLLKRG 254 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~-----v~V~Sr~~~~~~~--~~w~~~~--~~~~~i~~~~~~~~~~~~~G 254 (711)
++. .-....|+.|+|+.++.++++. +.|.|+..+ +.. +.|...- .+. .+.... .....++|
T Consensus 101 K~~------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~-G~~f~i~L~i~i~~n~G-~I~~~~--~~~~~~~G 170 (659)
T PRK14867 101 KMH------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGD-GKIHEMEIKMSVEKNEG-DIVSHK--VREGFWRG 170 (659)
T ss_pred ccc------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCC-CEEEEEEEEEEecccCC-eecccc--cCCCCCCC
Confidence 111 0124568999999888766543 578888643 332 2332221 111 111110 01235799
Q ss_pred eEEEEEecCCCccCCCcHHHHHHHHHHhcC
Q 005150 255 TQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 255 T~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 284 (711)
|+|++.+++-.- ... +..+.+++++++.
T Consensus 171 T~Ie~~V~dLFy-nR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 171 TRVEGEFKEVTY-NRR-EQGPFEYLRRISL 198 (659)
T ss_pred cEEEEEEeecee-chh-hHHHHHHHHHHHH
Confidence 999977654211 111 2348899999885
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.89 E-value=2e-08 Score=117.77 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=98.5
Q ss_pred CchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--------HHhhhh
Q 005150 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIA 174 (711)
Q Consensus 103 ~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~--------~l~tIa 174 (711)
++...|+|||.||+|++.. .....|.|.++++ +.|+|+|||.||+.+.... .|+++-
T Consensus 37 gl~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lh 101 (631)
T PRK05559 37 GLHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLH 101 (631)
T ss_pred hhhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecc
Confidence 3567999999999999621 1234777777665 4899999999999998876 666632
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCC
Q 005150 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKR 253 (711)
Q Consensus 175 ~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~ 253 (711)
.+| ++.. ......-|..|+|..++-.++++++|.|+..+. .|.++..++.. -.+.... +.....+
T Consensus 102 ags------Kf~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~--~~~~~~~ 167 (631)
T PRK05559 102 AGG------KFSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVG--TAGKRKT 167 (631)
T ss_pred ccC------ccCC----ccccccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccc--cccCCCC
Confidence 222 1211 112357899999999999999999999997552 24443333311 1111111 1111579
Q ss_pred CeEEEEEecCCC-ccCCCcHHHHHHHHHHhcC
Q 005150 254 GTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 254 GT~I~L~Lk~~~-~~e~~~~~~i~~li~~ys~ 284 (711)
||+|++...... ...-.+...|.+.+++++-
T Consensus 168 GT~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~ 199 (631)
T PRK05559 168 GTRVRFWPDPKIFDSPKFSPERLKERLRSKAF 199 (631)
T ss_pred CcEEEEEECHHHcCCcccCHHHHHHHHHHHHh
Confidence 999999742210 0012355778888988874
No 20
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.87 E-value=9.2e-09 Score=117.23 Aligned_cols=157 Identities=22% Similarity=0.267 Sum_probs=104.7
Q ss_pred HHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC-CCcEEEEEeCCCCCCHHHHHHHHhhh
Q 005150 95 LIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMTKEELVDCLGTI 173 (711)
Q Consensus 95 lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DnGiGMt~eel~~~l~tI 173 (711)
|-+.+...+..++|+|||.||.|| +...|+|.++. +-..|.|.|||.|+++.+..-.-..+
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDA------------------GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh 73 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDA------------------GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH 73 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCccc------------------CCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhh
Confidence 334566667789999999999999 44577777654 45789999999999999987633344
Q ss_pred hccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCC
Q 005150 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKR 253 (711)
Q Consensus 174 a~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~ 253 (711)
-+|.-..|-+ + ......|..|-.+-|.-.+|+ |.|+|++.....|..|..+..|... ...+ -..++
T Consensus 74 ~TSKi~~f~D-l-------~~l~T~GFRGEALSsLCa~~d-v~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~----~ar~~ 139 (672)
T KOG1978|consen 74 TTSKIVSFAD-L-------AVLFTLGFRGEALSSLCALGD-VMISTRSHSAKVGTRLVYDHDGHII-QKKP----VARGR 139 (672)
T ss_pred hhhcccchhh-h-------hhhhhhhhHHHHHHhhhhccc-eEEEEeeccCccceeEEEccCCcee-eecc----ccCCC
Confidence 4553333311 1 123567888888855555644 8899998766678889888776643 2111 25689
Q ss_pred CeEEEEE-----ecCCCccCCCc-----HHHHHHHHHHhcC
Q 005150 254 GTQITLY-----LKEDDKYEFSE-----PTRIQGLVKNYSQ 284 (711)
Q Consensus 254 GT~I~L~-----Lk~~~~~e~~~-----~~~i~~li~~ys~ 284 (711)
||+|.+. |.-... +|-. -.++..++.-|+.
T Consensus 140 GTTV~v~~LF~tLPVR~k-ef~r~~Kref~k~i~li~~y~l 179 (672)
T KOG1978|consen 140 GTTVMVRQLFSTLPVRRK-EFQRNIKRKFVKLISLIQAYAL 179 (672)
T ss_pred CCEEEHhhhcccCCCchH-HhhcchhhhhhhHHhhHHHHHh
Confidence 9999997 211111 1111 1467778888887
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.70 E-value=3e-08 Score=115.99 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=100.4
Q ss_pred chhhHHHhhhhHhh---HHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHHHh-
Q 005150 104 KEVFLRELVSNASD---ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLG- 171 (711)
Q Consensus 104 ~~iflRELIqNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee--------l~~~l~- 171 (711)
+...|+|||.||+| |. ...+|.|.++.+ +.|+|.|||.||+.++ +...|+
T Consensus 31 ~~~lv~ElvdNsiDE~~ag-----------------~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAG-----------------FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhcC-----------------CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 56799999999999 41 234777777665 7999999999999988 766663
Q ss_pred hhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCC
Q 005150 172 TIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKL 250 (711)
Q Consensus 172 tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~ 250 (711)
.+|.| ++.. ..-....|..|+|..++-.++.+++|.|+..+. .|.++..++.. -.+.... +...
T Consensus 93 lhags-------K~~~----~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~--~~~~~~~~G~~~~~~~~i~--~~~~ 157 (625)
T TIGR01055 93 LHAGG-------KFSN----KNYHFSGGLHGVGISVVNALSKRVKIKVYRQGK--LYSIAFENGAKVTDLISAG--TCGK 157 (625)
T ss_pred ccccC-------CCCC----CcceecCCCcchhHHHHHHhcCeEEEEEEECCe--EEEEEEECCeEcccccccc--ccCC
Confidence 33433 2221 112357899999999999999999999997653 25444444321 0111110 1112
Q ss_pred CCCCeEEEEEecCCCc-cCCCcHHHHHHHHHHhcCCC-CCCeEEee
Q 005150 251 LKRGTQITLYLKEDDK-YEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 294 (711)
Q Consensus 251 ~~~GT~I~L~Lk~~~~-~e~~~~~~i~~li~~ys~fi-~~pI~~~~ 294 (711)
..+||+|++.-....- ..-.+..+|.+.+++++-.- ..-|.+++
T Consensus 158 ~~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 158 RLTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred CCCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 4599999985322100 01234578899998887522 24444443
No 22
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.68 E-value=8.6e-08 Score=111.84 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=93.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccCc
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~~l~tIa~Sgt 178 (711)
..|+|||.||+||..+ .....|.|.++.++ .|+|+|||.||+.+... +.+.++...|.
T Consensus 4 ~~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~ 68 (594)
T smart00433 4 HLVDEIVDNAADEALA--------------GYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGG 68 (594)
T ss_pred EEEeeehhcccchhcc--------------CCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccC
Confidence 3689999999999521 12447777776654 99999999999954321 11122222221
Q ss_pred hhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEE
Q 005150 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (711)
Q Consensus 179 ~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~ 258 (711)
+ | . ........|..|+|..++-.++.+++|.|+..+. .|.+....+|. .+.+... .......||+|+
T Consensus 69 k-f----d----~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~-~~~~~~~-~~~~~~~GT~V~ 135 (594)
T smart00433 69 K-F----D----DDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGK-PLSEPKI-IGDTKKDGTKVT 135 (594)
T ss_pred C-C----C----CCCccccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCe-ECcccee-cCCCCCCCcEEE
Confidence 1 1 1 1122347899999999999999999999998753 34444432221 1111100 012347999999
Q ss_pred EEecCCCccCC-----CcHHHHHHHHHHhcCCCCCCeEE
Q 005150 259 LYLKEDDKYEF-----SEPTRIQGLVKNYSQFVSFPIYT 292 (711)
Q Consensus 259 L~Lk~~~~~e~-----~~~~~i~~li~~ys~fi~~pI~~ 292 (711)
.. ++.. .| .+...|.+.++.++- +..-|.+
T Consensus 136 F~--Pd~~-~F~~~~~~~~~~i~~rl~~~A~-l~pgl~i 170 (594)
T smart00433 136 FK--PDLE-IFGMTTDDDFELLKRRLRELAF-LNKGVKI 170 (594)
T ss_pred EE--ECHH-HhCCcccchHHHHHHHHHHHHh-cCCCcEE
Confidence 64 3322 22 233678888888874 3333443
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.43 E-value=5.8e-07 Score=105.61 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=94.1
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~~l~tIa~Sg 177 (711)
...|+|||.||+|-.. . .....|.|.++.+ +.|+|+|||.||+.+.-. +.+.++..+|
T Consensus 39 ~~~v~ElvdNaiDe~~-------------a-g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEAL-------------A-GYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhccccccc-------------C-CCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 3578899999999421 0 1234777777664 599999999999986211 1122222222
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEE
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQI 257 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I 257 (711)
.+ | . ........|..|+|..++-.++++++|.|+..+. +|.....++.. +.+... .+.....||+|
T Consensus 104 ~k-f----d----~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~--~~~~~~-~~~~~~~GT~I 169 (638)
T PRK05644 104 GK-F----G----GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVP--VTPLEV-IGETDETGTTV 169 (638)
T ss_pred Cc-c----C----CCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeE--ccCccc-cCCcCCCCcEE
Confidence 11 1 1 1112347899999999999999999999997653 55554444321 111110 11235799999
Q ss_pred EEEecCCCc---cCCCcHHHHHHHHHHhcCCCCCCeEE
Q 005150 258 TLYLKEDDK---YEFSEPTRIQGLVKNYSQFVSFPIYT 292 (711)
Q Consensus 258 ~L~Lk~~~~---~e~~~~~~i~~li~~ys~fi~~pI~~ 292 (711)
+.. ++.. ..-++...|.+.++.++- +...|.+
T Consensus 170 ~F~--Pd~~~F~~~~~e~~~i~~rl~~~A~-l~pgl~i 204 (638)
T PRK05644 170 TFK--PDPEIFETTEFDYDTLATRLRELAF-LNKGLKI 204 (638)
T ss_pred EEE--ECHHHcCCcccCHHHHHHHHHHHHh-hCCCcEE
Confidence 964 2222 022355788899998885 3333433
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.42 E-value=7e-07 Score=105.48 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=93.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel-------~~~l~tIa~Sg 177 (711)
...++|||.||+|-.. . .....|.|.++.+ +.|+|.|||.||+.+-- .+.+.++..+|
T Consensus 32 ~~vv~Elv~NaiDe~~-------------a-g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM-------------A-GYCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhccccccc-------------c-CCCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 4678899999999320 0 1134777777654 46999999999998611 01111222222
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEE
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQI 257 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I 257 (711)
.+ | . ........|..|+|..|+-.++++++|.|+..+. .|..+..++.. +.+... .+.....||+|
T Consensus 97 ~k-f----~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~--~~~l~~-~~~~~~~GT~V 162 (654)
T TIGR01059 97 GK-F----D----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIP--LGPLEV-VGETKKTGTTV 162 (654)
T ss_pred Cc-c----C----CCcceecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCc--ccCcee-ccCCCCCCcEE
Confidence 11 1 1 1122357899999999999999999999997653 24444443321 111000 11245799999
Q ss_pred EEEecCCC--ccCCCcHHHHHHHHHHhcCCCCCCeEE
Q 005150 258 TLYLKEDD--KYEFSEPTRIQGLVKNYSQFVSFPIYT 292 (711)
Q Consensus 258 ~L~Lk~~~--~~e~~~~~~i~~li~~ys~fi~~pI~~ 292 (711)
+..-.+.. . .-.+...|.+.++.++- +.-.|.+
T Consensus 163 ~F~pdp~~F~~-~~~e~~~i~~rl~~~A~-l~pgl~i 197 (654)
T TIGR01059 163 RFWPDPEIFET-TEFDFDILAKRLRELAF-LNSGVKI 197 (654)
T ss_pred EEEEChHHhCC-cccCHHHHHHHHHHhhc-cCCCeEE
Confidence 96632210 1 12355789999999884 4434444
No 25
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.35 E-value=1.2e-06 Score=103.92 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=95.0
Q ss_pred hhhHHHhhhhHhh-HHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH----------HHHHHHhhh
Q 005150 105 EVFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE----------ELVDCLGTI 173 (711)
Q Consensus 105 ~iflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~e----------el~~~l~tI 173 (711)
...|+|||.||+| |++ .....|+|.++.+ +.|+|+|||.||+.+ |+. |+ .
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~ 99 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-V 99 (756)
T ss_pred hhhhhHhhccccccccc---------------CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-e
Confidence 4689999999999 210 1134777777664 599999999999997 544 22 2
Q ss_pred hccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce-EEEeccCCCCCCCC
Q 005150 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVIREETDPEKLLK 252 (711)
Q Consensus 174 a~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~~~ 252 (711)
..+|.+ +. ...-.-.-|.-|+|..++-.++++++|.|+..+. .|..+...+..- .+... +....
T Consensus 100 lhAggK-----fd----~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~----g~~~~ 164 (756)
T PRK14939 100 LHAGGK-----FD----QNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVV----GETDK 164 (756)
T ss_pred ecccCC-----CC----CCcccccCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCcccc----CCcCC
Confidence 233322 21 1112236799999999999999999999997653 344443333211 11111 12357
Q ss_pred CCeEEEEEecCCC-ccCCCcHHHHHHHHHHhcCCCC--CCeEEee
Q 005150 253 RGTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQFVS--FPIYTWQ 294 (711)
Q Consensus 253 ~GT~I~L~Lk~~~-~~e~~~~~~i~~li~~ys~fi~--~pI~~~~ 294 (711)
+||+|+..-.... ...-++...|.+.++.++- +. .-|.+++
T Consensus 165 ~GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA~-lnpgl~i~l~d 208 (756)
T PRK14939 165 TGTEVRFWPSPEIFENTEFDYDILAKRLRELAF-LNSGVRIRLKD 208 (756)
T ss_pred CCcEEEEEECHHHcCCcccCHHHHHHHHHHHhh-cCCCCEEEEec
Confidence 9999999632110 0012355778888888874 44 4444443
No 26
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.28 E-value=1.4e-06 Score=78.86 Aligned_cols=80 Identities=29% Similarity=0.480 Sum_probs=58.7
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
..+.||++||+|+... ...+.|.+..+.+...|+|.|||.||+.+++...+....++
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~--------- 64 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS--------- 64 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS---------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc---------
Confidence 5789999999999753 13455555555667889999999999999998766433222
Q ss_pred hhcccCCCCCccccccccccceeeeeeeE
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~ 214 (711)
..+....+.+|+|++.+..++++
T Consensus 65 ------~~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 65 ------DKSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ------SSSSGGSSSSSHHHHHHHHHHHH
T ss_pred ------cccccccCCCChHHHHHHHHHHH
Confidence 11344567799999999888664
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.85 E-value=8.6e-06 Score=92.82 Aligned_cols=126 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh-hhhccCchhHH
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG-TIAQSGTSKFL 182 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~-tIa~Sgt~~f~ 182 (711)
-..+|+||+.|++||. ...|.|.++-..-.+.|.|||.||+++||.. || +-++| +|.
T Consensus 22 la~~VeElv~NSiDA~------------------At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TS---K~h 79 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAE------------------ATCVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTS---KCH 79 (1142)
T ss_pred HHHHHHHHHhhccccC------------------ceEEEEEecCceeEEEEEecCCCccHHHHHH-HHhhhhhh---hce
Confidence 4679999999999993 4577777777788999999999999999975 44 33333 222
Q ss_pred HHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEE-ecCCceEEEeccCCCCCCCCCCeEEEEE
Q 005150 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEA-EADSSSYVIREETDPEKLLKRGTQITLY 260 (711)
Q Consensus 183 ~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~-~~~~~~~i~~~~~~~~~~~~~GT~I~L~ 260 (711)
... + .......|..|-.++|+.=++. ++|+|++.+-..+|...- -.+.....-+++ ..+...||+|+++
T Consensus 80 -~~n---d-l~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD---~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 80 -SVN---D-LENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID---VTRASSGTTVTVY 149 (1142)
T ss_pred -ecc---c-cccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc---cccccCCcEEEeH
Confidence 111 1 1234678899999999887744 667888766444443111 111111222222 2356899999998
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.43 E-value=0.00052 Score=80.94 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=92.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHHHhhhhccCc
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSGT 178 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel-------~~~l~tIa~Sgt 178 (711)
..+.|+|.||+|=.. ......|.|.+++ ++.|+|.|||.||+-+-- .+.+.++..+|.
T Consensus 37 hlv~EIvdNavDE~~--------------ag~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVL--------------AGYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhh--------------cCCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 467799999999521 1123477777774 469999999999986421 111112222322
Q ss_pred hhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEE
Q 005150 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (711)
Q Consensus 179 ~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~ 258 (711)
+ | . ...-...-|.-|+|.-.+=.++++++|.++..+......|+. ++. .+.+... .+....+||+|+
T Consensus 102 k-f----d----~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~--Gg~-~~~~l~~-~~~~~~~GT~V~ 168 (637)
T TIGR01058 102 K-F----D----QGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFEN--GGK-IVQSLKK-IGTTKKTGTLVH 168 (637)
T ss_pred c-C----C----CCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEec--CCc-CcCCccc-ccCCCCCceEEE
Confidence 1 1 1 111224669999999999999999999999755222223432 111 1111110 112346999999
Q ss_pred EEecCCC--ccCCCcHHHHHHHHHHhcCCC-CCCeEEee
Q 005150 259 LYLKEDD--KYEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 294 (711)
Q Consensus 259 L~Lk~~~--~~e~~~~~~i~~li~~ys~fi-~~pI~~~~ 294 (711)
.....+- . .-++.+.|.+-++..+-.. ..-|.+++
T Consensus 169 F~PD~~iF~~-~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 169 FHPDPTIFKT-TQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEeCHHHcCC-CccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 8854321 1 1135567777777766422 35666654
No 29
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.12 E-value=0.0017 Score=55.50 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=57.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.+++||+.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999531 123345555555445678999999999999987655432111
Q ss_pred hhcccCCCCCccccccccccceeeeeee----EEEEEEe
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTK 220 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad----~v~V~Sr 220 (711)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112234578999988877766 5555543
No 30
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.11 E-value=0.0016 Score=56.55 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=53.8
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.||+.||.++... ...+.|.+..+.....|.|.|+|.||+.+++...+.....+
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~--------- 64 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT--------- 64 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC---------
Confidence 4678899999888521 13456666665556789999999999998887655432211
Q ss_pred hhcccCCCCCccccccccccceeeeeeeE
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~ 214 (711)
..+....+..|+|+..+-.++++
T Consensus 65 ------~~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 65 ------DGRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred ------CCCCCCCCcccccHHHHHHHHHH
Confidence 00123456789999988777554
No 31
>PRK10604 sensor protein RstB; Provisional
Probab=96.95 E-value=0.0015 Score=73.43 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=50.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||+||+.+. .+.+.|.+..+.+.-.|+|+|||.||+.+++..-+....+..
T Consensus 322 ~vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~-------- 377 (433)
T PRK10604 322 RVLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD-------- 377 (433)
T ss_pred HHHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC--------
Confidence 46888899988772 134566666665567799999999999999876554322210
Q ss_pred hhcccCCCCCccccccccccceeeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad 213 (711)
......-|.+|+|++-+-.+++
T Consensus 378 ------~~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 378 ------PSRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred ------CCCCCCCCCccchHHHHHHHHH
Confidence 0111223668999976555533
No 32
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.87 E-value=0.0023 Score=71.62 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=37.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
..+.+||+||..+. ...+.|++..+.+.-.|+|.|||+||+.+++...+.
T Consensus 356 ~~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 405 (461)
T PRK09470 356 SALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFR 405 (461)
T ss_pred HHHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcC
Confidence 35888999988762 134566666666666799999999999998876553
No 33
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.83 E-value=0.0022 Score=69.77 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=49.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
..+..||+||..+.. ..+.+.|.+..+.+.-.|+|+|||+||+++++...+...-+.
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM--------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC---------
Confidence 468889999887731 124456666555556789999999999999987544221100
Q ss_pred hhcccCCCCCccccccccccceeeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad 213 (711)
+ ..-|.+|+|++-+-.+++
T Consensus 307 --------~-~~~~g~GlGL~i~~~i~~ 325 (356)
T PRK10755 307 --------D-SRYGGIGLGLSIVSRITQ 325 (356)
T ss_pred --------C-CCCCCcCHHHHHHHHHHH
Confidence 0 012457999987766644
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.81 E-value=0.0024 Score=71.74 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=50.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
..+.+||.||+.+.. ..+.+.|.+..+.+.-.|+|+|||.||+++++..-+...-+..
T Consensus 355 qvl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~-------- 412 (466)
T PRK10549 355 QLFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE-------- 412 (466)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC--------
Confidence 357788888888731 1234455555555556789999999999998876553322110
Q ss_pred hhcccCCCCCccccccccccceeeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad 213 (711)
+......|..|+|++-+-.+++
T Consensus 413 ------~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 413 ------GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred ------CCcCCCCCCCcHHHHHHHHHHH
Confidence 1112244678999986655544
No 35
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.73 E-value=0.0022 Score=76.46 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=47.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
..+.+||+||.++.. ..+.+.|++..+.+.-.|+|+|||.||+++.+.+.+-.-..+
T Consensus 582 ~vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~--------- 638 (679)
T TIGR02916 582 RVLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDT--------- 638 (679)
T ss_pred HHHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCC---------
Confidence 367888888888841 123455555554555679999999999999855544221111
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.+. +..|+|++.+-.++
T Consensus 639 ------~~~----~G~GLGL~i~~~iv 655 (679)
T TIGR02916 639 ------TKG----AGMGIGVYECRQYV 655 (679)
T ss_pred ------CCC----CCcchhHHHHHHHH
Confidence 011 56799998876653
No 36
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.69 E-value=0.0031 Score=70.70 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=49.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+|++||.++.. ....+.|.+..+.+.-.|+|.|||+||+.+++...+...-+..
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD-------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc--------
Confidence 567889999998842 1233444444454556799999999999999876443211110
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.......|..|+|++-|-.++
T Consensus 378 ------~~~~~~~~G~GLGL~ivk~iv 398 (430)
T PRK11006 378 ------KARSRQTGGSGLGLAIVKHAL 398 (430)
T ss_pred ------CCCCCCCCCCchHHHHHHHHH
Confidence 001122356799997766553
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.68 E-value=0.0032 Score=70.17 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=49.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||.||.++.. .++.+.|++..+.+.-.|+|.|||.||+.+++...+...-++..
T Consensus 356 ~~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~------- 414 (457)
T TIGR01386 356 RAISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP------- 414 (457)
T ss_pred HHHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc-------
Confidence 467888888887731 12344555555444457999999999999988876644322210
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.....-+..|+|++-+--++
T Consensus 415 -------~~~~~~~g~GlGL~i~~~~~ 434 (457)
T TIGR01386 415 -------ARSNSGEGTGLGLAIVRSIM 434 (457)
T ss_pred -------ccCCCCCCccccHHHHHHHH
Confidence 01112355889987765553
No 38
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.67 E-value=0.0038 Score=69.74 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=48.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe--cCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
..+.+|+.||.++.... ......|.|.. ..+.-.|+|.|||+||+.+....-|...-++
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~------- 450 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT------- 450 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc-------
Confidence 47899999999996421 01123455543 3444679999999999998887655432211
Q ss_pred HhhhcccCCCCCccccccccccceeeee
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLV 211 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~v 211 (711)
.....+.-|+|++.+-.+
T Consensus 451 ----------~~~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 451 ----------KGGSRKHIGMGLSVAQEI 468 (494)
T ss_pred ----------CCCCCCCCcccHHHHHHH
Confidence 011144578898776655
No 39
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.57 E-value=0.0055 Score=68.54 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=36.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
..+.+||.||..+.. +++.+.|.+..+.+.-.|+|+|||.||+.+++...+
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~ 421 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIF 421 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 457888889888731 123445555555555679999999999999887655
No 40
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.36 E-value=0.0099 Score=74.07 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=78.1
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~~l~tIa~Sg 177 (711)
.-.+.|.|.||.|-.. | +..-..|.|.++.+++.|+|.|||.||+-+--. +.+.++...|
T Consensus 54 ~ki~dEIldNAvDe~~--~-----------~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 54 YKIFDEILVNAADNKQ--R-----------DPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHHHhh--h-----------cCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 3578899999999731 1 112347888888877899999999999865211 1111222223
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCC-ceEEEeccCCCCCCCCCCeE
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS-SSYVIREETDPEKLLKRGTQ 256 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~-~~~i~~~~~~~~~~~~~GT~ 256 (711)
.+ | . .......-|.-|+|...+=.++.+++|.+.....+..|.-+...+- .-...... ......+||+
T Consensus 121 gk-F----d----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~--~~~~~~~GT~ 189 (1135)
T PLN03128 121 SN-F----D----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKIT--SCKASENWTK 189 (1135)
T ss_pred cc-c----C----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceec--cCCCCCCceE
Confidence 21 2 1 1122347799999999999999999999983332333432222221 00011111 1112359999
Q ss_pred EEEEe
Q 005150 257 ITLYL 261 (711)
Q Consensus 257 I~L~L 261 (711)
|+..-
T Consensus 190 ItF~P 194 (1135)
T PLN03128 190 ITFKP 194 (1135)
T ss_pred EEEEE
Confidence 99874
No 41
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.27 E-value=0.0074 Score=63.69 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=34.8
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
++.+||.||+++.. ....+.|.+....+.-.|.|.|||.||+.+.+...+
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if 282 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLT 282 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhc
Confidence 68889999887731 123344444444445679999999999999887544
No 42
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.25 E-value=0.0072 Score=74.13 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=36.7
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++..||+||+.+.. .+.+.|++..+.+.-.|+|+|||+||+.+++..-+
T Consensus 516 ~il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 516 QILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 467789999998731 24455665555555679999999999999987654
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.23 E-value=0.011 Score=68.00 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=48.2
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHhh
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~~ 186 (711)
.+.+|++||.+|+.+.. .+...+.|.+..+.+.-.|.|.|||.||+.++...-|.. +.+.+
T Consensus 436 vl~nLl~NAi~~~~~~~----------~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk-------- 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRSD----------EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR-------- 496 (545)
T ss_pred HHHHHHHHHHHHHhhCC----------CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC--------
Confidence 58899999999974210 111223444433334456899999999999988765532 22210
Q ss_pred hcccCCCCCccccccccccceeeeee
Q 005150 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.. --|..|+|++.+-.++
T Consensus 497 -------~~-~~~g~GlGL~ivk~iv 514 (545)
T PRK15053 497 -------AD-EPGEHGIGLYLIASYV 514 (545)
T ss_pred -------CC-CCCCceeCHHHHHHHH
Confidence 11 1244699998876663
No 44
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.22 E-value=0.008 Score=69.00 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=35.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++..||.||+.++. ..+.|.+..+.+.-.|+|+|||.||+.+++..-+
T Consensus 381 ~vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF 429 (485)
T PRK10815 381 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIF 429 (485)
T ss_pred HHHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 367888889888842 2345665555555679999999999999987654
No 45
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.16 E-value=0.011 Score=72.99 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
.++..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++..-|....+.
T Consensus 582 ~il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-------- 638 (968)
T TIGR02956 582 QVLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA-------- 638 (968)
T ss_pred HHHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc--------
Confidence 478899999998831 24466666666666 779999999999999987665432211
Q ss_pred hhhcccCCCCCccccccccccceeeeeee----EEEEEEe
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTK 220 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad----~v~V~Sr 220 (711)
.....-|..|+|++-|-.+++ ++.|.|.
T Consensus 639 --------~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~ 670 (968)
T TIGR02956 639 --------DGRRRSGGTGLGLAISQRLVEAMDGELGVESE 670 (968)
T ss_pred --------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEec
Confidence 111223567899876654432 4455444
No 46
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.14 E-value=0.009 Score=70.23 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=87.4
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--H--------Hhhhh
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--C--------LGTIA 174 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~--~--------l~tIa 174 (711)
...+.|+|.||+|-..+ ++. .....|.|.++ ++.|+|+|||.||+-+--.+ . ..++.
T Consensus 47 ~hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~L 113 (602)
T PHA02569 47 VKIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRT 113 (602)
T ss_pred eeeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEee
Confidence 34677999999996310 110 12347877777 67899999999998653211 0 11223
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCC
Q 005150 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRG 254 (711)
Q Consensus 175 ~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~G 254 (711)
.+|.+ | + +.-...-|.-|+|.-.+=.++.+++|+++..+ ..|.-+... |. ...+.. .+....+|
T Consensus 114 haGgk-F-d--------~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~--~~~~q~f~~-G~-~~~~~~--~~~~~~~G 177 (602)
T PHA02569 114 KAGSN-F-D--------DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGK--NEVTVNCSN-GA-ENISWS--TKPGKGKG 177 (602)
T ss_pred ccccc-c-C--------CcceeeCCcCCccceeeeccchhhheEEEcCC--EEEEEEecC-Cc-ccCCcc--cCCCCCCc
Confidence 33322 2 1 11234679999999888899999999886433 223222121 21 111111 12234699
Q ss_pred eEEEEEecCCC---ccCCC--cHHHHHHHHHHhcCCCC--CCeEEee
Q 005150 255 TQITLYLKEDD---KYEFS--EPTRIQGLVKNYSQFVS--FPIYTWQ 294 (711)
Q Consensus 255 T~I~L~Lk~~~---~~e~~--~~~~i~~li~~ys~fi~--~pI~~~~ 294 (711)
|+|+..-...- . +|- ....|.+-++..+ |+. .-|.+++
T Consensus 178 T~V~F~PD~~iF~~~-~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 178 TSVTFIPDFSHFEVN-GLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred cEEEEEECHHHhCCC-ccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 99988743321 1 221 1244555555554 343 5566654
No 47
>PRK10364 sensor protein ZraS; Provisional
Probab=96.13 E-value=0.013 Score=66.17 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=36.8
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
..+..||.||.+|.. ..+.+.|.+..+.+.-.|+|+|||.||+.+.+...+
T Consensus 351 ~il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 357788889999852 123445555555555689999999999999887654
No 48
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.10 E-value=0.017 Score=66.03 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=37.8
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
.++.+|+.||.+|... .....+.|++..+.+.-.|.|.|||.||+.+++...|.
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~ 489 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFD 489 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHh
Confidence 3577999999999631 01233445554444456789999999999999876653
No 49
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.09 E-value=0.013 Score=73.83 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=94.0
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~~l~tIa~Sg 177 (711)
.-.+.|.|.||.|-..+ +..-..|.|.++.+++.|+|.|||-||+-+--. ..+.++...|
T Consensus 79 ~kifdEIldNAvDe~~r-------------~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 79 YKIFDEILVNAADNKQR-------------DPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhhHHHHhhhhHhHHhh-------------cCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc
Confidence 45788999999997311 112347888888778899999999999865211 1111222333
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeE--EEEEecCC-ceEEEeccCCCCCCCCCC
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADS-SSYVIREETDPEKLLKRG 254 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~--~w~~~~~~-~~~i~~~~~~~~~~~~~G 254 (711)
.+ | . .......-|.-|+|.-.+=.++.+++|.++....+..| .|...-+. .-.+... .....+|
T Consensus 146 gk-F----d----d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~----~~~~~~G 212 (1465)
T PLN03237 146 SN-Y----D----DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK----CKKSENW 212 (1465)
T ss_pred cc-C----C----CCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc----CCCCCCc
Confidence 21 2 1 11223577999999999999999999999832223344 45431111 1111111 1123699
Q ss_pred eEEEEEecCC---CccCCCcHHHHHHHHHH---hcCCC--CCCeEEeecc
Q 005150 255 TQITLYLKED---DKYEFSEPTRIQGLVKN---YSQFV--SFPIYTWQEK 296 (711)
Q Consensus 255 T~I~L~Lk~~---~~~e~~~~~~i~~li~~---ys~fi--~~pI~~~~~~ 296 (711)
|+|+..-... .. + ++.+.+..+.++ .+.|+ ..-|++++++
T Consensus 213 T~VtF~PD~eiF~~~-~-fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 213 TKVTFKPDLAKFNMT-H-LEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred eEEEEEECHHHhCCc-e-EcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 9998873221 11 2 344555444333 34455 3677777654
No 50
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.02 E-value=0.0092 Score=71.92 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=93.1
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~~l~tIa~Sg 177 (711)
...+.|+|.||+|=... ..--.|.|.+++ ++.|+|+|||-||+-+.-. +...|+..+|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 45789999999995211 123377777765 4799999999999874321 1222334454
Q ss_pred chhHHHHh----hhc--------------------------ccC--CCCCccccccccccceeeeeeeEEEEEEecCCCC
Q 005150 178 TSKFLKAL----KEN--------------------------NDL--GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSD 225 (711)
Q Consensus 178 t~~f~~~~----~~~--------------------------~~~--~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~ 225 (711)
.+ |-... ..+ .+. +.=...-|.-|||.-.+=.++.+++|.++..+
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-- 272 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-- 272 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC--
Confidence 32 21100 000 000 00023678999999888899999999999865
Q ss_pred CeEEEEEecCCceEEEeccCCCCCC-CCCCeEEEEEec-CC-CccC-C--------------CcHHHHHHHHHHhcCCCC
Q 005150 226 KQYVWEAEADSSSYVIREETDPEKL-LKRGTQITLYLK-ED-DKYE-F--------------SEPTRIQGLVKNYSQFVS 287 (711)
Q Consensus 226 ~~~~w~~~~~~~~~i~~~~~~~~~~-~~~GT~I~L~Lk-~~-~~~e-~--------------~~~~~i~~li~~ys~fi~ 287 (711)
..|.-+...+ . .+.+... .+.. ..+||+|+..-. +. .. . . ++...|.+-++.++ |+.
T Consensus 273 K~y~q~F~rG-~-~v~pLkv-ig~~~~~tGT~VtF~PD~~~IF~-~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLN 347 (903)
T PTZ00109 273 KIYSIELSKG-K-VTKPLSV-FSCPLKKRGTTIHFLPDYKHIFK-THHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLN 347 (903)
T ss_pred EEEEEEeCCC-c-ccCCccc-cCCcCCCCceEEEEEeCcchhcC-ccccccccccccccccccCHHHHHHHHHHHh-ccC
Confidence 2332222222 1 1111110 0112 358999988754 32 10 1 0 24456777777766 343
Q ss_pred --CCeEEee
Q 005150 288 --FPIYTWQ 294 (711)
Q Consensus 288 --~pI~~~~ 294 (711)
.-|.+++
T Consensus 348 pGL~I~L~D 356 (903)
T PTZ00109 348 PGLTFYLVD 356 (903)
T ss_pred CCcEEEEEe
Confidence 5566654
No 51
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.01 E-value=0.015 Score=73.49 Aligned_cols=134 Identities=21% Similarity=0.288 Sum_probs=80.2
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------H-HHhhhhcc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------D-CLGTIAQS 176 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~-------~-~l~tIa~S 176 (711)
...+.|.|.||.|-..+ ++ ....-..|.|.++.+.+.|+|.|||.||+-+--. + .|+.+-++
T Consensus 59 ~ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 45788999999997421 00 0112358888888877899999999999864211 1 12222233
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeE--EEEEecCCceEEEeccCCCCCCCCCC
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADSSSYVIREETDPEKLLKRG 254 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~--~w~~~~~~~~~i~~~~~~~~~~~~~G 254 (711)
| + | . .......-|.-|+|...+=.++.+++|.+.....+..| .|...... ...+... ......+|
T Consensus 129 g-k-f----d----d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~--~~~p~i~-~~~~~~~G 195 (1388)
T PTZ00108 129 S-N-Y----D----DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSK--KSEPRIT-SYDGKKDY 195 (1388)
T ss_pred c-c-C----C----CCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcC--CCCCccC-CCCCCCCc
Confidence 2 1 2 1 11233578999999999999999999999987333434 45421101 0111110 00011689
Q ss_pred eEEEEEe
Q 005150 255 TQITLYL 261 (711)
Q Consensus 255 T~I~L~L 261 (711)
|+|+..-
T Consensus 196 T~VtF~P 202 (1388)
T PTZ00108 196 TKVTFYP 202 (1388)
T ss_pred eEEEEEe
Confidence 9998874
No 52
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.018 Score=66.65 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=96.3
Q ss_pred CchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH-------HHhhhhc
Q 005150 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD-------CLGTIAQ 175 (711)
Q Consensus 103 ~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~-------~l~tIa~ 175 (711)
+...-+.|.|.||.|=-- .+ ..-.|.|.++ .++.|+|.|||-||+-+-=.. .+.|.-.
T Consensus 36 GLhHlv~EVvDNsiDEal------------aG--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LH 100 (635)
T COG0187 36 GLHHLVWEVVDNSIDEAL------------AG--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLH 100 (635)
T ss_pred cceeeEeEeeechHhHHh------------hC--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeec
Confidence 345678999999999631 11 3347777776 568999999999998764111 1222223
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCC
Q 005150 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (711)
Q Consensus 176 Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~G 254 (711)
.|.+ | . .+.-...=|--|||.--+=.++++++|.++..+ .-|.-.-..+.. -.+.... ......+|
T Consensus 101 AGGK-F----d----~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig--~~~~~~~G 167 (635)
T COG0187 101 AGGK-F----D----NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIG--STDTKKTG 167 (635)
T ss_pred cCcc-c----C----CCccEeecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceecc--cCCCCCCc
Confidence 3321 1 1 111123568899999888899999999999875 223222222221 1222221 11244689
Q ss_pred eEEEEEecCCC---ccCCCcHHHHHHHHHHhcCCC-CCCeEEeec
Q 005150 255 TQITLYLKEDD---KYEFSEPTRIQGLVKNYSQFV-SFPIYTWQE 295 (711)
Q Consensus 255 T~I~L~Lk~~~---~~e~~~~~~i~~li~~ys~fi-~~pI~~~~~ 295 (711)
|+|+..-.+.. . +| +...|.+.++.++=.. ...|.+.++
T Consensus 168 T~V~F~PD~~iF~~~-~f-~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 168 TKVRFKPDPEIFGET-EF-DYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred cEEEEEcChHhcCCc-cc-CHHHHHHHHHHHhccCCCCEEEEEec
Confidence 99988743321 1 22 4567777777766432 366777553
No 53
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.97 E-value=0.014 Score=71.78 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=51.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
..+..||+||+.+.. .+.+.|.+..+.+.-.|.|.|||+||+.+++...|...-+.
T Consensus 564 qil~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 619 (914)
T PRK11466 564 QVITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV--------- 619 (914)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC---------
Confidence 367889999998831 24455555555555679999999999999987655321110
Q ss_pred hhcccCCCCCccccccccccceeeeeee----EEEEEEe
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTK 220 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad----~v~V~Sr 220 (711)
....|..|+|++-|-.+++ ++.|.|.
T Consensus 620 ---------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~ 649 (914)
T PRK11466 620 ---------SGKRGGTGLGLTISSRLAQAMGGELSATST 649 (914)
T ss_pred ---------CCCCCCCcccHHHHHHHHHHcCCEEEEEec
Confidence 0112567899876655533 3455444
No 54
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.96 E-value=0.014 Score=64.93 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
++.+||.||+.+. .+.+.|.+..+.+.-.|+|.|||.||+.+++...+.
T Consensus 335 il~NLl~NA~k~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~ 383 (435)
T PRK09467 335 ALANLVVNAARYG----------------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQ 383 (435)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcC
Confidence 5666777766552 134455555554456799999999999999876553
No 55
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.84 E-value=0.021 Score=63.38 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=46.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
-++..||.||+.+.. ..+.+.|.+....+ .-.|.|.|||.||+.+++...|...-+.
T Consensus 275 qvl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~-------- 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRL-------- 332 (380)
T ss_pred HHHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeC--------
Confidence 467888999988741 12333333332223 3568999999999999887655321110
Q ss_pred hhhcccCCCCCccccccccccceeeeee
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.....-+..|+|++-|..++
T Consensus 333 --------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 333 --------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred --------CCCCCCCcccccHHHHHHHH
Confidence 01112346899998777663
No 56
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.78 E-value=0.017 Score=66.13 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=35.3
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCCHHHHHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt~eel~~~l 170 (711)
++.+||.||+.+.. ..+.+.|.+..+.+. -.|.|+|||+||+.+++...+
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 57788888888742 123445555545455 779999999999999886544
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.61 E-value=0.029 Score=67.87 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=55.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
-++..||.||.++. ..+.+.|.+... .+.-.|+|.|||+||+.+++..-|...-+.
T Consensus 401 qvl~NLl~NAik~~---------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-------- 457 (779)
T PRK11091 401 QILWNLISNAVKFT---------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-------- 457 (779)
T ss_pred HHHHHHHHHHHHhC---------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc--------
Confidence 46789999999884 124456666655 334578999999999999987655432211
Q ss_pred hhhcccCCCCCccccccccccceeeeee----eEEEEEEec
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVA----QKVVVSTKS 221 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~va----d~v~V~Sr~ 221 (711)
+ ........|.-|+|++-+-.+. -++.|.|..
T Consensus 458 -~----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 458 -K----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred -c----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 0 0011223466788887665543 356665553
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=95.54 E-value=0.025 Score=63.41 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=33.3
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
++++||.||..+.. ....|.|.... ..|.|.|||.||+++++...+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~ 402 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGE 402 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcc
Confidence 67889999888831 11245554432 3799999999999999876553
No 59
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.51 E-value=0.026 Score=69.94 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=49.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
-.+..||+||+.+.. .+.+.|.+..+.+.-.|.|.|||+||+.+++..-+...-+.+
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~-------- 621 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG-------- 621 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC--------
Confidence 478889999998831 234556665554456789999999999999876553221110
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.......+..|+|++-|-.++
T Consensus 622 ------~~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 622 ------TGVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred ------CCCCCCCCCeehhHHHHHHHH
Confidence 001112345789987776553
No 60
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.46 E-value=0.032 Score=68.82 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=35.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC---CcEEEEEeCCCCCCHHHHHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
-++..||+||..+.. .+.+.|.+..... .-.|.|.|||+||+.+++..-+.
T Consensus 568 QVL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFe 621 (894)
T PRK10618 568 KILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHF 621 (894)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcC
Confidence 467789999998841 2344555544322 24689999999999999876543
No 61
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.42 E-value=0.029 Score=68.74 Aligned_cols=87 Identities=18% Similarity=0.336 Sum_probs=52.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC--CC---cEEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--EN---GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~---~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~ 180 (711)
..+..||+||+.+.. .+.+.|.+.... ++ -.|.|.|||+||+++++..-+...-+..
T Consensus 411 ~vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--- 472 (919)
T PRK11107 411 QIITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD--- 472 (919)
T ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC---
Confidence 367899999998842 234455554322 21 3589999999999999876553221110
Q ss_pred HHHHhhhcccCCCCCccccccccccceeeeeee----EEEEEEec
Q 005150 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (711)
Q Consensus 181 f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad----~v~V~Sr~ 221 (711)
.......|..|+|++-|-.+++ ++.|.|..
T Consensus 473 -----------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 -----------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred -----------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 0111234678999877655533 45555543
No 62
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.31 E-value=0.032 Score=67.06 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=50.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++..||.||.++.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++..-+...-+. .
T Consensus 600 ~il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~-~------- 657 (703)
T TIGR03785 600 QMLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSV-R------- 657 (703)
T ss_pred HHHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeec-C-------
Confidence 467889999998842 123355555555555679999999999999987655332211 0
Q ss_pred hhcccCCCCCccccccccccceeeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad 213 (711)
.....--+..|+|++-+-.+++
T Consensus 658 ------~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 658 ------DQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ------CCCCCCCCCccHHHHHHHHHHH
Confidence 0011112358999988766644
No 63
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.03 E-value=0.07 Score=65.32 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=52.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec---------------CCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---------------PENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
..+.+||+||..+.. ..+.+.|.+... .+.-.|.|.|||+||+.+++...|
T Consensus 563 qvl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 563 QVLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh
Confidence 467889999999852 123455555543 223468999999999999887544
Q ss_pred hhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeee----eEEEEEEec
Q 005150 171 GTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVA----QKVVVSTKS 221 (711)
Q Consensus 171 ~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~va----d~v~V~Sr~ 221 (711)
...- + . . . |..|+|++.|-.++ =++.|.|..
T Consensus 629 e~F~-~---------------~-~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 629 EPFF-T---------------T-R-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred CCcc-c---------------C-C-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 2111 0 0 1 1 66789988775553 356776653
No 64
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.64 E-value=0.052 Score=62.56 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=36.3
Q ss_pred HhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 110 ELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 110 ELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
-||+||.||+.- .....+.|+..-+.+.-.|+|+|||.|+..+-+...|.
T Consensus 504 NLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFe 553 (603)
T COG4191 504 NLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFE 553 (603)
T ss_pred HHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcC
Confidence 489999999742 11233455555556667899999999999998877664
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.63 E-value=0.037 Score=54.11 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=53.4
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
..++.|++.||+....+ + .....+.|.+....+.-.|.|.|+|.||+.+.+...+. .....
T Consensus 44 ~lav~Ea~~Nai~Hg~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYK-------E----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCC-----
Confidence 35899999999998521 0 01234566666666667899999999999776543221 00000
Q ss_pred hhhcccCCCCCccccccccccceeeeeeeEEEEEE
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~S 219 (711)
...+... .-|+|++-+-.++|++.+.+
T Consensus 105 ------~~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ------KPIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ------CcccccC--CCceeHHHHHHHHHhEEEEc
Confidence 0001111 23777777777788887764
No 66
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.56 E-value=0.11 Score=48.72 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=30.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMT 162 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt 162 (711)
..++.||++||..+. |. + .....+.|.+....+.-.|.|.|+|.||+
T Consensus 41 ~~~l~eli~Nai~h~----~~----~---~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 41 KTAVSEAVTNAIIHG----YE----E---NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHhc----cC----C---CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 357899999988541 10 0 11233455555555556789999999997
No 67
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.54 E-value=0.043 Score=56.89 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=35.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDC 169 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~ 169 (711)
..+..||.||.+|+. .+.+.|.+....+.-.|.|.|||.||+++++...
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~i 279 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERI 279 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHh
Confidence 478899999999951 2334444444333468999999999999996543
No 68
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=94.45 E-value=0.071 Score=60.99 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=48.8
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
+.|.-||.||.||..+ . .....+.+.+..+.+.-.|.|.|||+||+++.....+ ..|.|.+
T Consensus 430 tIlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF-e~G~Stk------- 490 (537)
T COG3290 430 TILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF-EKGVSTK------- 490 (537)
T ss_pred HHHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH-hcCcccc-------
Confidence 5677799999999742 0 1123344444444444568999999999998887444 3455521
Q ss_pred hhcccCCCCCccccccccccceeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLV 211 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~v 211 (711)
--|..|+|+|-+=..
T Consensus 491 -----------~~~~rGiGL~Lvkq~ 505 (537)
T COG3290 491 -----------NTGGRGIGLYLVKQL 505 (537)
T ss_pred -----------CCCCCchhHHHHHHH
Confidence 146789998765443
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.26 E-value=0.072 Score=65.85 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
..+..||+||..+.. ....+.|.+..+.+.-.|.|.|||.||+.+++..-|
T Consensus 781 qVL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 831 (895)
T PRK10490 781 RVLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIF 831 (895)
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhc
Confidence 467889999988841 123345555544455679999999999999886544
No 70
>PRK09835 sensor kinase CusS; Provisional
Probab=93.98 E-value=0.082 Score=59.55 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=35.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~ 171 (711)
.++.+||.||+.+.. +...+.|++..+.+.-.|.|.|||.||+.+++...+.
T Consensus 378 ~vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~ 429 (482)
T PRK09835 378 RAISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFD 429 (482)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC
Confidence 467788888777731 1233455555555556799999999999999876543
No 71
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.92 E-value=0.084 Score=67.01 Aligned_cols=50 Identities=30% Similarity=0.412 Sum_probs=34.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe---cCCC--cEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP---DPEN--GTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~L~I~DnGiGMt~eel~~~l 170 (711)
..+..||.||+++.. .+.+.|.+.. +.+. -.|.|.|||+||+.+++..-+
T Consensus 831 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 885 (1197)
T PRK09959 831 QVLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLF 885 (1197)
T ss_pred HHHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhh
Confidence 478899999999952 1334444432 2222 357999999999999987654
No 72
>PRK03660 anti-sigma F factor; Provisional
Probab=93.47 E-value=0.29 Score=46.37 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=31.0
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTK 163 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ 163 (711)
..++.|++.||+... +. . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 357899999988542 11 0 011335555555555567899999999975
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.35 E-value=0.13 Score=50.29 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
..++.|++.||+...-. ....+.+.|.+..+.+.-.+.|+|+|.|++.+.+...+. ....
T Consensus 44 ~lav~Ea~~Nai~ha~~-----------~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~------ 103 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-----------EGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG------ 103 (159)
T ss_pred HHHHHHHHHHHHHhccC-----------CCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC------
Confidence 35899999999988411 011234566666665566789999999998776553221 1100
Q ss_pred hhhcccCCCCCccccccccccceeeeeeeEEEEEE
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~S 219 (711)
.........-|.|++-+=.++|.+.+.+
T Consensus 104 -------~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 -------SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred -------CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234888888888889888865
No 74
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.21 E-value=0.32 Score=58.10 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=33.7
Q ss_pred HHHhhhhHhhHHHH----hhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH
Q 005150 108 LRELVSNASDALDK----LRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (711)
Q Consensus 108 lRELIqNA~DA~~k----~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~ 168 (711)
|..||.||+|+.-. |+.... ...+.+.|......+.-.|+|.|||.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~gk------p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAGK------NSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcCC------CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999998521 111100 01233444444444445689999999999998764
No 75
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.90 E-value=0.15 Score=46.89 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=54.8
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
..++.|++.||+..... ......+.|++..++..-.|.|+|+|.|++.........
T Consensus 33 ~lav~E~~~Nav~H~~~-----------~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP-----------GDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC-----------CCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 46899999999999521 001234566666777778899999999988875542110
Q ss_pred hhhcccCCCCCccccccccccceeeeeeeEEEE
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVV 217 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V 217 (711)
........-|.|++-+-.++|++.+
T Consensus 89 --------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0112334567777777788899988
No 76
>PRK13557 histidine kinase; Provisional
Probab=92.04 E-value=0.24 Score=56.36 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=17.3
Q ss_pred cEEEEEeCCCCCCHHHHHHHH
Q 005150 150 GTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 150 ~~L~I~DnGiGMt~eel~~~l 170 (711)
-.|+|.|||.||+.++...-|
T Consensus 325 ~~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 325 VSIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEEcCCCCCCHHHHHhcc
Confidence 368999999999998876544
No 77
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=91.20 E-value=0.47 Score=55.12 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=46.7
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC--cEEEEEe
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITD 156 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~L~I~D 156 (711)
+++.+.+..|.+.|-+ ++--||+||.+|++++.-... ..-.|+++.+..+ -.+.|+|
T Consensus 588 g~epl~~~~D~~~l~Q------------vf~NliKNA~EAi~~~~~~e~---------~~~~i~~~~~~~~g~i~v~V~D 646 (712)
T COG5000 588 GGEPLIGMADATLLGQ------------VFGNLLKNAAEAIEAVEAEER---------RTALIRVSLDDADGRIVVDVID 646 (712)
T ss_pred CCCceeeecCHHHHHH------------HHHHHHHhHHHHhhhcccccC---------CcceEEEEEecCCCeEEEEEec
Confidence 3445555656543333 334589999999986442211 1126777776654 4579999
Q ss_pred CCCCCCHHHHHHHH
Q 005150 157 TGIGMTKEELVDCL 170 (711)
Q Consensus 157 nGiGMt~eel~~~l 170 (711)
||.|++.+++.+.+
T Consensus 647 NGkG~p~e~r~r~~ 660 (712)
T COG5000 647 NGKGFPRENRHRAL 660 (712)
T ss_pred CCCCCChHHhhhhc
Confidence 99999999987765
No 78
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.13 E-value=0.94 Score=49.86 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=73.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
.-.+-||..||..|.-+. .....+ +-+++.|.|...+++-+|.|+|-|=|++..++...| .-+.|.-.
T Consensus 262 ~ymlfElfKNamrATve~--h~~~~~----~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~----- 329 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEH--HGDDGD----ELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAP----- 329 (414)
T ss_pred HHHHHHHHHHHHHHHHHH--hccCCC----CCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCC-----
Confidence 346889999999996432 111111 124466666666678899999999999999987544 34444211
Q ss_pred hhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEEEEecCC
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKED 264 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~~ 264 (711)
+...+ +.....+--||.|+.-+=.++. .. +|...+... .+.||.+.++||..
T Consensus 330 -~~~~d-~~~~~plaGfG~GLPisrlYa~-------yf------------~Gdl~L~Sl-------eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 330 -APSSD-NNRTAPLAGFGFGLPISRLYAR-------YF------------GGDLKLQSL-------EGIGTDVYIYLKAL 381 (414)
T ss_pred -CCCCC-CCCcCcccccccCCcHHHHHHH-------Hh------------CCCeeEEee-------eccccceEEEeccC
Confidence 11000 1113467778888865444322 11 122233332 47999999999987
Q ss_pred Cc
Q 005150 265 DK 266 (711)
Q Consensus 265 ~~ 266 (711)
..
T Consensus 382 s~ 383 (414)
T KOG0787|consen 382 SM 383 (414)
T ss_pred Cc
Confidence 66
No 79
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.60 E-value=0.42 Score=49.44 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=33.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCC--cEEEEEeCCCCCCHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTKE 164 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~L~I~DnGiGMt~e 164 (711)
.++-||++||.-... . . .+.+.++|.+..+.++ ..++|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf----~--~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAF----L--S-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcC----C--C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 477899999988731 1 0 1234455666665554 589999999999865
No 80
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.36 E-value=0.26 Score=56.84 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=29.4
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~e 164 (711)
.+.|++.||..+.. .+.+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 56788889887631 23345555444445679999999999854
No 81
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.21 E-value=0.31 Score=56.90 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=29.7
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~e 164 (711)
.++|+|+||..+- ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 5788888877662 123345555555445679999999999875
No 82
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=88.76 E-value=1.5 Score=42.54 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=54.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
.+++-|++.||+.+--+ ...+.+.+.|.+..+++.-.++|+|.|.|+ +++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~----------~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~--~~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYK----------LDPSEGEIRIEVSLDDGKLEIRIWDQGPGI--EDLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhh----------cCCCCceEEEEEEEcCCeEEEEEEeCCCCC--CCHHHhcCCC-----------
Confidence 68999999999998422 111124566666677777889999999664 4444444211
Q ss_pred hhhcccCCCCCcccccc---ccccceeeeeeeEEEEEEecCC
Q 005150 185 LKENNDLGADNGLIGQF---GVGFYSAFLVAQKVVVSTKSPR 223 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqF---GIGf~S~F~vad~v~V~Sr~~~ 223 (711)
....+.- |.|++-+=.+.|+|.+.....+
T Consensus 99 ----------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 99 ----------DTTAEGLQEGGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred ----------CCCCcccccccccHHHHhhhheeEEEEeccCC
Confidence 1122233 6777666667788888755443
No 83
>PRK13560 hypothetical protein; Provisional
Probab=88.70 E-value=0.45 Score=57.10 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=30.1
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC--C-CcEEEEEeCCCCCCHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--E-NGTITITDTGIGMTKE 164 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~-~~~L~I~DnGiGMt~e 164 (711)
.+.+|++||+.+... +.....|.|.... + .-.|.|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999998421 1122345554432 2 3568999999999875
No 84
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=88.49 E-value=0.52 Score=53.98 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=33.2
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~e 164 (711)
.|||-++||.-.- .+..+.|.+....+..+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 6899999998772 234556666666677899999999998865
No 85
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=88.31 E-value=0.71 Score=49.71 Aligned_cols=50 Identities=24% Similarity=0.273 Sum_probs=32.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC-------C-----CcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-------E-----NGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-------~-----~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++..||+||.+|... ....|.|.... + .-.|.|.|||.||+.+.....|
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF 301 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLF 301 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhcc
Confidence 4688999999999621 12234443211 1 1258999999999998775433
No 86
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=0.021 Score=65.48 Aligned_cols=203 Identities=7% Similarity=-0.132 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHH
Q 005150 480 NKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLE 559 (711)
Q Consensus 480 d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE 559 (711)
+...+.++|+.|...+..++-++--....--... ....-.-...-|.+++ .+.+++-..++....+..-+.+.....
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 4457889999999888888776644443333332 1111111234566666 555667777888877776677766777
Q ss_pred HHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchh-H--hhHhhHHHHHHHHHHHHHHhCCceeEEEE
Q 005150 560 KLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDE-V--KERETKQEFNLLCDWIKQQLGDKVAKVQV 636 (711)
Q Consensus 560 ~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e-~--~~~~~~~~~~~L~~~~k~~L~~kV~~V~v 636 (711)
.-.+-++|++..-+..+.||.+.+.+|....++......+-.-..+. + .+++.+++.+..-.-+ +.| | ..+
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~ef-e~l-c----k~m 525 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEF-EEL-C----KWM 525 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHH-HHH-H----HHH
Confidence 77888999999999999999999999998888888887764322221 1 1112222222221111 122 2 224
Q ss_pred eecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHH
Q 005150 637 SKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVK 692 (711)
Q Consensus 637 S~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~ 692 (711)
..+|.+ +|+-|+..+.++.++..|+..+-...+.|...|++++..+.|+.|-+..
T Consensus 526 K~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~ 580 (656)
T KOG0019|consen 526 KEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA 580 (656)
T ss_pred HHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc
Confidence 567876 9998888889999999999877555677777789999999999987754
No 87
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.52 E-value=0.51 Score=51.97 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=37.6
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~ 167 (711)
.-+++|.|.||.-.- .+..+.|++..+.+.-.|+|.|||.|.+.+...
T Consensus 281 ~rivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 281 FRIVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 358999999998773 235567777777777889999999999987654
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=83.69 E-value=3.8 Score=49.47 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=42.2
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQ 175 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~ 175 (711)
+-+|--||.||.-.- .+...++|.+..+.+.-.+.|.|||.|++.+++..-|-...+
T Consensus 777 eQVLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r 833 (890)
T COG2205 777 EQVLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYR 833 (890)
T ss_pred HHHHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhc
Confidence 346667889988762 123446666677777788999999999999999987755443
No 89
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.80 E-value=1.7 Score=50.28 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=27.5
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTK 163 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~ 163 (711)
.+.||+.||..+. ..+.+.|.+... .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~---------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHA---------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcC---------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 5678888877652 123345554444 23356899999999985
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=78.86 E-value=4.1 Score=46.55 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=38.2
Q ss_pred CCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe--cCCCcEEEEEeCCCCCCHHHHHH
Q 005150 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVD 168 (711)
Q Consensus 101 Ys~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~L~I~DnGiGMt~eel~~ 168 (711)
+-+|...+-=||.||.-|+-+. ..+...|.|.. ..+.-.+.|.|||.||++.-...
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 3467778888999999997431 11233555543 32335689999999999987653
No 91
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=76.72 E-value=5.8 Score=46.65 Aligned_cols=67 Identities=19% Similarity=0.388 Sum_probs=42.7
Q ss_pred ceEEEEec--CCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeee---
Q 005150 139 LEIRIKPD--PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ--- 213 (711)
Q Consensus 139 ~~I~I~~d--~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad--- 213 (711)
..|.|..+ ++..++.|.|||+|++..-+.+-|.-.-+ +. ....+-| -|+|++-|-.+++
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqR---------l~------s~~~y~g-tG~GL~I~kkI~e~H~ 720 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQR---------LH------SRDEYLG-TGLGLAICKKIAERHQ 720 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHh---------cC------chhhhcC-CCccHHHHHHHHHHhC
Confidence 46666644 34688999999999999887765532111 11 1223455 8999987766643
Q ss_pred -EEEEEEec
Q 005150 214 -KVVVSTKS 221 (711)
Q Consensus 214 -~v~V~Sr~ 221 (711)
++-|.|+.
T Consensus 721 G~i~vEs~~ 729 (750)
T COG4251 721 GRIWVESTP 729 (750)
T ss_pred ceEEEeecC
Confidence 55666653
No 92
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.38 E-value=3.8 Score=45.00 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=36.4
Q ss_pred eEEEEecC--CCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCcccccccccccee
Q 005150 140 EIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSA 208 (711)
Q Consensus 140 ~I~I~~d~--~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~ 208 (711)
+|.+.+.. ..-.|.|.|+|+|++++++..-|-++-+-. .......|-=|.|++-+
T Consensus 363 ~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvd--------------kARsR~~gGTGLGLaIa 419 (459)
T COG5002 363 RITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVD--------------KARSRKMGGTGLGLAIA 419 (459)
T ss_pred eEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhh--------------hhhhhcCCCCchhHHHH
Confidence 55554433 335689999999999999998876544321 11234667788888543
No 93
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=75.74 E-value=2.1 Score=51.70 Aligned_cols=126 Identities=22% Similarity=0.183 Sum_probs=67.3
Q ss_pred hHHHhhhhHhhHHH----HhhhhhccCCCCCCCCCCceEEEEecC-CC-cEEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005150 107 FLRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDP-EN-GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (711)
Q Consensus 107 flRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~-~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~ 180 (711)
-|.=||-||+|..- .|+- .+......|.+..-. ++ -.|+|+|+|-|++.+-+...-..-|--. .+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~-~~ 506 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLIT-EE 506 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCC-hH
Confidence 35567889999852 2221 112234577776533 33 4589999999999998876322111100 00
Q ss_pred HHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEE-----EEEecCCceEEEeccCCCCCCCCCCe
Q 005150 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYV-----WEAEADSSSYVIREETDPEKLLKRGT 255 (711)
Q Consensus 181 f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~-----w~~~~~~~~~i~~~~~~~~~~~~~GT 255 (711)
=.+.+. +.. -+.+=|...|.=+++|+=.|.+ +-|.. .+. -+|...|.. ..++||
T Consensus 507 ~a~~lS-------d~E---i~~LIF~PGFSTa~~VtdvSGR---GVGMDVVk~~I~~-LgG~I~V~S-------~~G~GT 565 (716)
T COG0643 507 EAETLS-------DEE---ILNLIFAPGFSTAEQVTDVSGR---GVGMDVVKTNIEQ-LGGSISVSS-------EPGKGT 565 (716)
T ss_pred HhccCC-------HHH---HHHHHhcCCCCcchhhhcccCC---ccCHHHHHHHHHH-cCCEEEEEe-------cCCCCe
Confidence 000011 111 1223366777777887666654 22221 111 135555554 358999
Q ss_pred EEEEEec
Q 005150 256 QITLYLK 262 (711)
Q Consensus 256 ~I~L~Lk 262 (711)
+++|+|.
T Consensus 566 ~Fti~LP 572 (716)
T COG0643 566 TFTIRLP 572 (716)
T ss_pred EEEEecC
Confidence 9999985
No 94
>PRK13559 hypothetical protein; Provisional
Probab=74.60 E-value=3.3 Score=44.95 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=26.6
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe--cC--CCcEEEEEeCCCCCCH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DP--ENGTITITDTGIGMTK 163 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~--~~~~L~I~DnGiGMt~ 163 (711)
++.||+.||+.+.. . ....+ .|+|.. .. +.-.|.+.|||.|+..
T Consensus 271 vl~nLi~NA~k~~~------~-----~~~~g--~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------L-----SADQG--RISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------c-----cCCCc--EEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67789999977621 0 01123 444444 32 2357888999998654
No 95
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=71.91 E-value=3.2 Score=50.04 Aligned_cols=97 Identities=24% Similarity=0.341 Sum_probs=56.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
-++-||+.||+|=+..+.....-+ .+..--...|+...-..+. |.|||.||..+-+..++.....+ +.
T Consensus 149 ~a~aeLldnalDEi~~~~tf~~vd--~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~-k~------ 216 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATFVRVD--YINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSS-KK------ 216 (775)
T ss_pred ChhhhhccccccccccccceEEee--eecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhh-hh------
Confidence 478999999999875422110000 0000000011111111111 67899999999888877543332 21
Q ss_pred hhcccCCCCCccccccccccceeee-eeeEEEEEEec
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKS 221 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~-vad~v~V~Sr~ 221 (711)
+-...+||.|.||...-| ++..+.|.+|.
T Consensus 217 -------e~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 217 -------EANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred -------hhhhhhhhhccccccchhhhccceeEeehh
Confidence 123578999999988766 78888888884
No 96
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=71.80 E-value=6.1 Score=44.83 Aligned_cols=54 Identities=31% Similarity=0.187 Sum_probs=37.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQ 175 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~L~I~DnGiGMt~eel~~~l~tIa~ 175 (711)
-++--|+-||+|||.- .++.|.+..+. +.-.|-|.|||-|-..+-+ ..|.+--+
T Consensus 567 QVlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~-dkLl~PFt 623 (673)
T COG4192 567 QVLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELV-DKLLTPFT 623 (673)
T ss_pred HHHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHH-HHhcCCcc
Confidence 3566789999999842 33577776644 3568999999999987554 44544333
No 97
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=71.68 E-value=6 Score=37.00 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=46.9
Q ss_pred HHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCC--------CCCCcc--
Q 005150 360 KKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFD--------GELFPR-- 428 (711)
Q Consensus 360 k~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~--------~~llP~-- 428 (711)
..+++ ++.+.|..+.... +.+.++|++.-|... +..++.+.+|||+++|.+..- +.++|.
T Consensus 6 ~~v~G~~~~~~li~i~~~~-~~~~i~G~is~p~~~--------r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~ 76 (123)
T cd03482 6 ADILGEDFAEQALAIDEEA-GGLRLSGWIALPTFA--------RSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGR 76 (123)
T ss_pred HHHhCHHHHhccceEeccC-CCEEEEEEEeCchhc--------cCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCC
Confidence 34442 3345555454333 358999988767643 345678999999999976531 134443
Q ss_pred -cccccceeecCCCCCCccc
Q 005150 429 -YLSFVKGVVDSDDLPLNVS 447 (711)
Q Consensus 429 -yl~Fv~GVVDS~dLplNvS 447 (711)
...++.=-||.+.+-.||.
T Consensus 77 ~P~~vL~l~ipp~~vDvNVh 96 (123)
T cd03482 77 HPAYVLYLELDPAQVDVNVH 96 (123)
T ss_pred CcEEEEEEEcChHheeeccC
Confidence 1333444456666667764
No 98
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=69.97 E-value=7.6 Score=35.92 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=49.8
Q ss_pred cCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCC--------CCCCcc--c-ccccc
Q 005150 366 FLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFD--------GELFPR--Y-LSFVK 434 (711)
Q Consensus 366 ~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~--------~~llP~--y-l~Fv~ 434 (711)
+.+.|..+....+ .+.++|++.-|... +.....+.+|||+|+|.+..- ++.+|. | ..++.
T Consensus 9 ~~~~l~~i~~~~~-~~~i~G~is~p~~~--------~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~ 79 (119)
T PF01119_consen 9 FASNLIEIDSEDE-DFSIEGYISKPDVS--------RSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLF 79 (119)
T ss_dssp HHCCEEEEEEEEC-CEEEEEEEE-SSCS--------BSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEE
T ss_pred HHhccEEEeccCC-CEEEEEEEECchhc--------cCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEE
Confidence 4466766765545 49999988877633 445689999999999987630 124443 1 22333
Q ss_pred eeecCCCCCCccc---hHhh--hccHHHHHHHHHHH
Q 005150 435 GVVDSDDLPLNVS---REIL--QESRIVRIMRKRLV 465 (711)
Q Consensus 435 GVVDS~dLplNvS---RE~l--Q~~~~l~~I~~~l~ 465 (711)
=-++.+.+-.||. ||.. .++.++..|++.+.
T Consensus 80 i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~ 115 (119)
T PF01119_consen 80 IEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIR 115 (119)
T ss_dssp EE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHH
T ss_pred EEcchHHccccccccceEEEecCHHHHHHHHHHHHH
Confidence 3345556666665 4543 33345455444443
No 99
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=67.88 E-value=9.5 Score=36.50 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeecc
Q 005150 356 HEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD 419 (711)
Q Consensus 356 ~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d 419 (711)
.+....+++ ...+.|..++...+ .+.++|++.-|... .+..+.+|||+++|.+
T Consensus 3 ~~~i~~i~G~~~~~~l~~v~~~~~-~~~v~G~is~p~~~----------sk~~q~ifVN~R~v~~ 56 (141)
T cd03486 3 LSVFKQIYGLVLAQKLKEVSAKFQ-EYEVSGYISSEGHY----------SKSFQFIYVNGRLYLK 56 (141)
T ss_pred HHHHHHHhChhhhccEEEeecccC-cEEEEEEEcCCCCC----------CCceEEEEECCEEech
Confidence 344556664 34455666665544 48999988777622 3578899999999965
No 100
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=63.97 E-value=7.8 Score=46.78 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=68.4
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhcc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~--------~l~tIa~S 176 (711)
.-..-|.+-||.| - .| ++ .--.|.+.++++...|.|.+||-|+.-+.... -+|.+-+|
T Consensus 55 ~ki~dEilvNaad-k--~r-----d~------~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-K--QR-----DP------KMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHHHhhcccc-c--cc-----CC------CcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 3455688899999 3 22 22 23478888899999999999999997544321 34444455
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEe--cCCCCCeEEEEEecC--CceEEEeccCCCCCCCC
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK--SPRSDKQYVWEAEAD--SSSYVIREETDPEKLLK 252 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr--~~~~~~~~~w~~~~~--~~~~i~~~~~~~~~~~~ 252 (711)
+ .+.. ......-|+-|.|-.-|-..+-+..|.|. ..+......|...-. ..-.+... ..+
T Consensus 121 s------ny~d----~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~------~~~ 184 (842)
T KOG0355|consen 121 S------NYDD----DEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS------TDE 184 (842)
T ss_pred c------ccCC----CccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC------CCC
Confidence 3 1221 11123445555554444444444445444 333333446754321 11122221 223
Q ss_pred CCeEEEEE
Q 005150 253 RGTQITLY 260 (711)
Q Consensus 253 ~GT~I~L~ 260 (711)
.+|+|++.
T Consensus 185 ~yTkitF~ 192 (842)
T KOG0355|consen 185 DYTKITFS 192 (842)
T ss_pred CcceEEeC
Confidence 49999886
No 101
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=57.31 E-value=17 Score=34.80 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=36.7
Q ss_pred ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCCC--------CCCcc--cccccceeecCCCCCCccc
Q 005150 379 GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDG--------ELFPR--YLSFVKGVVDSDDLPLNVS 447 (711)
Q Consensus 379 g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~~--------~llP~--yl~Fv~GVVDS~dLplNvS 447 (711)
+.+.++|++.-|.... .+.....+.+|||+++|.++.-. .+++. +..|+.--|+.+.+-.||.
T Consensus 43 ~~~~i~G~is~p~~~~------~r~~~~~q~~fVN~R~V~~~~l~~aI~~~y~~~~~~~~P~~vL~i~vp~~~vDvNVh 115 (142)
T cd03484 43 SEVKITGYISKPSHGC------GRSSSDRQFFYINGRPVDLKKVAKLINEVYKSFNSRQYPFFILNISLPTSLYDVNVT 115 (142)
T ss_pred CcEEEEEEECCCcccC------CCCCCCcEEEEECCeecCCHHHHHHHHHHHHHhcCcCCcEEEEEEEeCCcceeeeeC
Confidence 4588888777663221 13456789999999999764210 11111 2333444567766767764
No 102
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=56.07 E-value=25 Score=30.74 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHhcc-cCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 005150 358 FYKKTFNE-FLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (711)
Q Consensus 358 fyk~~~~~-~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~ 418 (711)
+...+++. ..+.+..++...+ .++++|++..|... +.....+.+|||+++|.
T Consensus 4 ~i~~~~g~~~~~~~~~~~~~~~-~~~v~g~l~~~~~~--------~~~~~~~~~fvN~r~v~ 56 (107)
T cd00329 4 RLAEILGDKVADKLIYVEGESD-GFRVEGAISYPDSG--------RSSKDRQFSFVNGRPVR 56 (107)
T ss_pred HHHHHhCHHhHhhcEEEeccCC-CEEEEEEEeCCccC--------cccCCcEEEEEcCeEEc
Confidence 44455532 2234444554433 48888988766653 22457899999999997
No 103
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=53.45 E-value=23 Score=33.35 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCCcceeeeccc-ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeecc-CC-----C---CCCC---cc---cc
Q 005150 367 LDPLAYTHFTTE-GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD-DF-----D---GELF---PR---YL 430 (711)
Q Consensus 367 ~~pl~~~h~~~e-g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d-~~-----~---~~ll---P~---yl 430 (711)
.+.|..+....+ +.+.++|++.-|.... .+..+..+.+|||+++|.+ .. . ..++ |. ..
T Consensus 15 ~~~li~i~~~~~~~~~~i~G~is~p~~~~------~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~ 88 (132)
T cd03485 15 AANMVPVQSTDEDPQISLEGFLPKPGSDV------SKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPV 88 (132)
T ss_pred HhccEEEeccCCCCcEEEEEEECCCCcCC------CcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCE
Confidence 345655655542 3588999777664321 1335688999999999987 31 1 1233 21 13
Q ss_pred cccceeecCCCCCCccc---hHhhh--ccHHHHHHHHHH
Q 005150 431 SFVKGVVDSDDLPLNVS---REILQ--ESRIVRIMRKRL 464 (711)
Q Consensus 431 ~Fv~GVVDS~dLplNvS---RE~lQ--~~~~l~~I~~~l 464 (711)
.++.--+|...+-.||+ ||.+- ++.++..|++.+
T Consensus 89 ~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v 127 (132)
T cd03485 89 FFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLL 127 (132)
T ss_pred EEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHH
Confidence 34444567777778886 45443 334555554443
No 104
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=51.15 E-value=25 Score=32.35 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeecc
Q 005150 368 DPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD 419 (711)
Q Consensus 368 ~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d 419 (711)
+.|..+++..+ .+.++|++.-|... +..+..+.+|||+++|.+
T Consensus 15 ~~l~~i~~~~~-~~~i~G~is~~~~~--------~~~~~~q~~fVN~R~v~~ 57 (122)
T cd00782 15 KNLIEVELESG-DFRISGYISKPDFG--------RSSKDRQFLFVNGRPVRD 57 (122)
T ss_pred hcceEEeccCC-CEEEEEEEECchhh--------cCCCccEEEEECCeEecC
Confidence 34555555443 48899977766542 345678999999999975
No 105
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=50.15 E-value=23 Score=33.21 Aligned_cols=92 Identities=11% Similarity=0.201 Sum_probs=55.5
Q ss_pred cCCCcceeeeccc---ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCC--------CCCCccc---cc
Q 005150 366 FLDPLAYTHFTTE---GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFD--------GELFPRY---LS 431 (711)
Q Consensus 366 ~~~pl~~~h~~~e---g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~--------~~llP~y---l~ 431 (711)
+.+.|..+....+ +.+.++|++.-|... ..++.+.+|||+|+|.+..= .+++|.- ..
T Consensus 14 ~~~~li~i~~~~~~~~~~~~i~G~is~p~~~---------~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~ 84 (127)
T cd03483 14 VANELIEVEISDDDDDLGFKVKGLISNANYS---------KKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFV 84 (127)
T ss_pred HHhcceEEecccCCcCCcEEEEEEEcCchhc---------CCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEE
Confidence 3455655554442 458999988767543 13467899999999987531 1455542 33
Q ss_pred ccceeecCCCCCCccc---hHhhhcc--HHHHHHHHHHHH
Q 005150 432 FVKGVVDSDDLPLNVS---REILQES--RIVRIMRKRLVR 466 (711)
Q Consensus 432 Fv~GVVDS~dLplNvS---RE~lQ~~--~~l~~I~~~l~~ 466 (711)
|+.=-||.+.+-.||. ||..-.+ .++..|++.|.+
T Consensus 85 ~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~ 124 (127)
T cd03483 85 YLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVED 124 (127)
T ss_pred EEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHH
Confidence 3444568888888886 5544333 444554444433
No 106
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=46.55 E-value=24 Score=39.20 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCCCCH
Q 005150 136 AGDLEIRIKPDPENGTITITDTGIGMTK 163 (711)
Q Consensus 136 ~~~~~I~I~~d~~~~~L~I~DnGiGMt~ 163 (711)
+.++.|.+..+.+.-.+.|+|||+|++.
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 3455666666555567899999999764
No 107
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=45.02 E-value=14 Score=44.72 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=35.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeee-eeeEEEEEEecCC
Q 005150 152 ITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKSPR 223 (711)
Q Consensus 152 L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~-vad~v~V~Sr~~~ 223 (711)
+...|+|+||+.+++...... ......||++|=|+.|.-| +++.+.+.|+...
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f-------------------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~ 55 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF-------------------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKES 55 (775)
T ss_pred cccccCCCCcCchhhhhhhhh-------------------cccccccccccCcccccccccCcccceeecccc
Confidence 567899999999998865421 0234567777777766543 5666666666543
No 108
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=40.29 E-value=31 Score=37.90 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=36.8
Q ss_pred cCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe--cCCCcEEEEEeCCCCCCHHHHH
Q 005150 100 LYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELV 167 (711)
Q Consensus 100 LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~L~I~DnGiGMt~eel~ 167 (711)
|-....+++.-.+|-|.--+++. .+..+|.|-+ ..+.-+++|+|||.|++-.+..
T Consensus 352 l~~e~~talyRv~QEaltNIErH-------------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIERH-------------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh-------------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 33444566777778777777641 2445666655 3445789999999999877654
No 109
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=37.75 E-value=89 Score=27.22 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=41.6
Q ss_pred CCceEEEEecCCH-HHHhhChhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeec
Q 005150 537 KQNAIYYLATDSL-KSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDI 594 (711)
Q Consensus 537 ~Qk~IYY~~~~s~-~~~~~sP~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V 594 (711)
+.+.+|.+.|.+. +.+..+|+. ...|..||+..+.+++.+...|......++.-|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a---~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLA---AKNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHH---HhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4568999999885 445555543 457899999999999999999998866665554
No 110
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=36.69 E-value=70 Score=35.01 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=31.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC----CcEEEEEeCCCCCCHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE----NGTITITDTGIGMTKEELV 167 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----~~~L~I~DnGiGMt~eel~ 167 (711)
-++--||.||..|+.-+- ... ...++. ..+.+++.+... .-.|.|.|||.|.+.+-..
T Consensus 244 Qv~LNlVrNAaqA~~~~~-~~~-g~I~Lr--TR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 244 QVFLNLVRNAAQALGGRA-DEG-GEIILR--TRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred HHHHHHHHHHHHHhcCCC-CCC-ceEEEE--eccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 467789999999974200 000 000000 122333333222 2458899999999876443
No 111
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=29.08 E-value=64 Score=37.22 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=32.8
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~e 164 (711)
.-.+-=||.||.-..-. ...+.+.+.|.+..+..+-.+.|+|||.|...+
T Consensus 458 ~filQPLVENAIKHG~~----------~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 458 SFILQPLVENAIKHGIS----------QLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhhhHHHHHHHHhccc----------chhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 33455688888876421 112345556666655556779999999999986
No 112
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.77 E-value=1e+02 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=34.4
Q ss_pred chHhhhccHHHHHHH---------HHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhhhcccC
Q 005150 447 SREILQESRIVRIMR---------KRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVED 502 (711)
Q Consensus 447 SRE~lQ~~~~l~~I~---------~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G~~eD 502 (711)
||+.+++ +++.+. ..+..|++++|...+. .-...-++.+.|..--+.|+++|
T Consensus 79 s~~Fl~e--l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~--~f~~~p~~~~~Y~~Lk~~G~i~~ 139 (139)
T cd03567 79 KFRFLNE--LIKLVSPKYLGSRTSEKVKTKIIELLYSWTL--ELPHEPKIKEAYDMLKKQGIIKD 139 (139)
T ss_pred hHHHHHH--HHHHhccccCCCCCCHHHHHHHHHHHHHHHH--HhcccchHHHHHHHHHHCCCcCC
Confidence 3555443 666664 4777888888888883 11223357788888888898875
No 113
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=22.56 E-value=1.3e+02 Score=34.71 Aligned_cols=101 Identities=30% Similarity=0.380 Sum_probs=59.4
Q ss_pred ecchhhHHHHHHHHHHccC--------------CCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC
Q 005150 83 FEYQAEVSRLMDLIVHSLY--------------SHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 148 (711)
Q Consensus 83 ~~Fq~e~~~Ll~lL~~~LY--------------s~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~ 148 (711)
+-++++ +++..+-.++- .-|..+|||+|.||+=.-| | +. ....+.|.|..
T Consensus 238 l~~~v~--~~i~fikrn~~~~~~v~~l~r~~v~dyP~~alREai~NAv~HRD---Y---s~-----~~~~v~I~iyd--- 301 (467)
T COG2865 238 LPEQVE--RAISFIKRNLNVPYVVEGLRRVEVWDYPLEALREAIINAVIHRD---Y---SI-----RGRNVHIEIYD--- 301 (467)
T ss_pred HHHHHH--HHHHHHHHhcCCceeecceeEeecccCCHHHHHHHHHHHHHhhc---c---cc-----CCCceEEEEEC---
Confidence 444443 67777765532 2278899999999986632 1 11 11245555543
Q ss_pred CcEEEEEeCC---CCCCHHHHHHHHhhhhccCchh-HHHHhhhcccCCCCCccccccccccceeeee
Q 005150 149 NGTITITDTG---IGMTKEELVDCLGTIAQSGTSK-FLKALKENNDLGADNGLIGQFGVGFYSAFLV 211 (711)
Q Consensus 149 ~~~L~I~DnG---iGMt~eel~~~l~tIa~Sgt~~-f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~v 211 (711)
..|.|.-.| .||+.+++.+. .|=.+. .+..+- .+..+|=+.|.|+-=+|-.
T Consensus 302 -DRieI~NPGgl~~gi~~~~l~~~-----~s~~RNp~LA~~l------~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 302 -DRIEITNPGGLPPGITPEDLLKG-----RSKSRNPVLAKVL------RDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred -CeEEEECCCCCCCCCChhHcccC-----CCcccCHHHHHHH------HHhhhHHHhCccHHHHHHH
Confidence 478898766 58888888653 332221 111111 2457888999998555544
No 114
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.80 E-value=1.2e+02 Score=24.66 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=34.6
Q ss_pred ceeeccCC-CceeCHHHHHHhcccCCceEEEEecCCHHHHhh-ChhHHHHhhCCcEEEEcC
Q 005150 514 RFYTSKSE-EELISLDEYVENMGEKQNAIYYLATDSLKSAKS-APFLEKLVQKDIEVLYLI 572 (711)
Q Consensus 514 rF~Ts~~~-~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~-sP~lE~~~~kG~eVL~l~ 572 (711)
..+|..+. ++.+++++|+++.++..=...-++.-+ .+.. -++.+.+++.|+.||+..
T Consensus 3 H~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 3 HVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred ccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEEEE
Confidence 34666654 567889999998876543455555433 1222 234566677888887654
No 115
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=6e+02 Score=27.40 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=14.8
Q ss_pred EEEEcCC-----CchHHHHHHHhhccCccee
Q 005150 567 EVLYLIE-----PIDEVAIQNLQTFNEKKFV 592 (711)
Q Consensus 567 eVL~l~d-----piDe~~l~~L~~~~~~~f~ 592 (711)
.|+|++| .+|-+++..+.++......
T Consensus 153 ~VlYl~DNaGEi~FD~vlie~ik~~~~~vv~ 183 (285)
T COG1578 153 SVLYLTDNAGEIVFDKVLIEVIKELGKKVVV 183 (285)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhcCCceEE
Confidence 5555555 3566666666666544333
Done!