Query 005150
Match_columns 711
No_of_seqs 274 out of 2037
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 5E-152 2E-156 1306.4 46.2 605 80-697 3-628 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 2E-140 7E-145 1210.3 53.4 583 79-697 21-612 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 2E-137 7E-142 1182.2 44.8 572 80-696 4-582 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 1E-132 4E-137 1131.1 36.0 548 80-666 4-558 (559)
5 3hjc_A Heat shock protein 83-1 100.0 1E-104 4E-109 874.3 32.6 363 331-697 11-375 (444)
6 3q6m_A Heat shock protein HSP 100.0 1E-103 3E-108 862.4 31.1 356 338-697 2-359 (448)
7 2cge_A ATP-dependent molecular 100.0 3E-101 1E-105 843.7 35.0 354 339-697 1-356 (405)
8 1hk7_A Heat shock protein HSP8 100.0 8.1E-87 2.8E-91 692.6 24.9 286 339-629 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 4.3E-86 1.5E-90 691.6 22.1 290 339-650 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 1.8E-83 6.3E-88 662.2 24.4 263 337-603 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 3.4E-83 1.2E-87 658.4 23.5 257 337-597 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 3.2E-81 1.1E-85 647.6 20.1 260 337-598 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 2.3E-58 7.9E-63 480.0 23.1 253 78-337 21-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 7.1E-54 2.4E-58 447.3 19.2 254 79-337 4-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 8.6E-54 2.9E-58 436.6 17.7 210 78-294 22-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 4E-53 1.4E-57 432.6 22.5 210 79-297 15-224 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 7.3E-50 2.5E-54 412.3 22.0 220 78-306 35-254 (256)
18 3t0h_A Heat shock protein HSP 100.0 1E-48 3.6E-53 399.4 21.4 220 78-306 7-226 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.8E-47 6.3E-52 393.1 20.5 212 80-296 9-221 (236)
20 1yc1_A HSP 86, heat shock prot 100.0 1.2E-44 4E-49 377.3 21.5 217 79-304 44-260 (264)
21 2wer_A ATP-dependent molecular 100.0 2.1E-44 7.1E-49 367.0 22.1 214 80-301 3-216 (220)
22 2ior_A Chaperone protein HTPG; 100.0 1.8E-40 6.2E-45 341.0 18.9 208 79-294 23-232 (235)
23 1b63_A MUTL; DNA mismatch repa 99.9 3.1E-22 1.1E-26 215.5 14.8 283 98-465 19-329 (333)
24 1h7s_A PMS1 protein homolog 2; 99.8 2.6E-20 8.9E-25 202.6 12.3 167 88-286 14-195 (365)
25 3h4l_A DNA mismatch repair pro 99.8 4.4E-20 1.5E-24 200.5 10.1 282 99-466 21-356 (367)
26 3na3_A DNA mismatch repair pro 99.8 7.4E-20 2.5E-24 197.2 11.1 283 92-466 16-333 (348)
27 1sf8_A Chaperone protein HTPG; 99.8 1.2E-19 4E-24 168.3 8.5 74 618-697 12-85 (126)
28 1s16_A Topoisomerase IV subuni 99.3 1E-10 3.5E-15 128.1 18.1 160 105-294 33-204 (390)
29 3fv5_A DNA topoisomerase 4 sub 99.2 1.4E-11 4.8E-16 123.4 9.7 159 104-294 18-190 (201)
30 3cwv_A DNA gyrase, B subunit, 99.2 3.8E-10 1.3E-14 122.7 18.7 144 104-284 31-183 (369)
31 1kij_A DNA gyrase subunit B; t 99.2 1E-10 3.5E-15 128.2 13.6 160 105-294 34-205 (390)
32 1ei1_A DNA gyrase B, GYRB; ATP 99.2 5.1E-10 1.7E-14 122.7 17.7 160 103-294 34-206 (391)
33 1mu5_A Type II DNA topoisomera 98.9 1.5E-09 5E-14 121.8 7.8 150 105-284 34-197 (471)
34 2zbk_B Type 2 DNA topoisomeras 98.9 2.4E-09 8.2E-14 121.5 7.9 159 105-293 33-206 (530)
35 1zxm_A TOPO IIA ATPase, DNA to 98.8 1.9E-08 6.6E-13 110.3 10.7 151 105-284 54-220 (400)
36 4duh_A DNA gyrase subunit B; s 98.7 2E-08 6.8E-13 101.7 8.9 160 104-295 36-208 (220)
37 2q2e_B Type 2 DNA topoisomeras 98.7 1.6E-08 5.4E-13 116.6 6.3 160 105-294 39-212 (621)
38 4emv_A DNA topoisomerase IV, B 98.6 3E-07 1E-11 93.4 13.2 158 105-295 42-214 (226)
39 3lnu_A Topoisomerase IV subuni 98.3 8.5E-07 2.9E-11 97.2 8.9 160 104-294 51-223 (408)
40 3ttz_A DNA gyrase subunit B; p 98.3 1.6E-06 5.6E-11 86.3 8.9 142 104-295 32-181 (198)
41 1pvg_A DNA topoisomerase II; G 97.9 2.2E-05 7.4E-10 86.6 9.9 129 106-262 67-207 (418)
42 1ysr_A Sensor-type histidine k 97.3 0.00021 7.3E-09 65.9 5.2 75 106-212 49-123 (150)
43 3jz3_A Sensor protein QSEC; he 97.2 0.00011 3.9E-09 71.7 3.0 72 106-212 120-191 (222)
44 2btz_A Pyruvate dehydrogenase 97.2 0.00041 1.4E-08 75.4 7.6 116 106-263 234-349 (394)
45 2e0a_A Pyruvate dehydrogenase 97.2 0.00045 1.5E-08 75.2 7.1 117 106-263 233-349 (394)
46 1id0_A PHOQ histidine kinase; 97.1 0.00037 1.3E-08 64.2 4.8 49 106-170 47-95 (152)
47 4ew8_A Sensor protein DIVL; si 97.1 0.00041 1.4E-08 70.1 5.4 49 106-168 158-206 (268)
48 2q8g_A [pyruvate dehydrogenase 97.0 0.00063 2.1E-08 74.3 6.7 117 106-263 246-362 (407)
49 3sl2_A Sensor histidine kinase 97.0 0.00018 6.1E-09 68.6 1.9 79 106-212 46-126 (177)
50 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00027 9.2E-09 76.6 3.3 59 106-170 241-299 (388)
51 1bxd_A ENVZ(290-450), protein 97.0 0.0003 1E-08 65.8 3.2 75 106-212 50-124 (161)
52 1y8o_A [pyruvate dehydrogenase 97.0 0.0006 2.1E-08 74.9 5.6 118 106-263 256-373 (419)
53 1th8_A Anti-sigma F factor; SP 96.9 0.00074 2.5E-08 62.2 5.2 85 105-220 41-125 (145)
54 4gfh_A DNA topoisomerase 2; to 96.9 0.0035 1.2E-07 77.1 12.1 147 106-282 62-223 (1177)
55 3d36_A Sporulation kinase B; G 96.9 0.00049 1.7E-08 68.2 3.9 51 106-170 126-176 (244)
56 3a0y_A Sensor protein; ATP-LID 96.4 0.0022 7.5E-08 58.7 4.3 50 107-170 51-100 (152)
57 2c2a_A Sensor histidine kinase 96.4 0.0021 7E-08 64.8 4.4 52 106-170 141-194 (258)
58 1b3q_A Protein (chemotaxis pro 96.4 0.003 1E-07 68.4 5.7 55 107-167 110-168 (379)
59 3ehg_A Sensor kinase (YOCF pro 96.2 0.0031 1E-07 56.9 4.1 46 106-166 43-88 (128)
60 3ehh_A Sensor kinase (YOCF pro 95.7 0.0077 2.6E-07 58.7 4.7 45 107-166 134-178 (218)
61 3zxq_A Hypoxia sensor histidin 95.7 0.0058 2E-07 54.3 3.4 44 106-165 42-85 (124)
62 3zxo_A Redox sensor histidine 95.6 0.0052 1.8E-07 54.9 2.5 44 106-165 46-89 (129)
63 1i58_A Chemotaxis protein CHEA 95.5 0.0096 3.3E-07 57.0 4.5 59 107-167 51-109 (189)
64 1r62_A Nitrogen regulation pro 95.1 0.0096 3.3E-07 54.7 2.9 52 106-170 51-112 (160)
65 3a0r_A Sensor protein; four he 94.4 0.024 8.3E-07 58.9 4.1 49 106-168 247-295 (349)
66 4fpp_A Phosphotransferase; fou 89.2 0.35 1.2E-05 48.6 5.2 46 107-166 150-197 (247)
67 3ke6_A Protein RV1364C/MT1410; 77.9 1.8 6.2E-05 46.8 4.8 74 105-220 299-373 (399)
68 1ixm_A SPO0B, protein (sporula 72.6 2.4 8.4E-05 41.4 3.7 54 109-170 111-166 (192)
69 2lnd_A De novo designed protei 27.8 1.4E+02 0.0049 24.9 6.3 57 526-586 39-98 (112)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-152 Score=1306.36 Aligned_cols=605 Identities=48% Similarity=0.809 Sum_probs=526.5
Q ss_pred cceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 005150 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (711)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 159 (711)
.|+|.||||+++|+++|+++||||+++|||||||||+||++|+||.++++++.+.+...+.|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999988889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceE
Q 005150 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (711)
Q Consensus 160 GMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~ 239 (711)
|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|+||+++ +.++.|+++|++.|+
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~----~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~-~~~~~W~s~g~~~~t 157 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNAGGSFT 157 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCS----SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTT-SCEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhc----ccchhhcCCCCchhHHHhhcCcEEEEEEccCC-CceEEEEEcCCceEE
Confidence 9999999999999999999999888763 35678999999999999999999999999987 679999999999999
Q ss_pred EEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCC-----------
Q 005150 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP----------- 308 (711)
Q Consensus 240 i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~----------- 308 (711)
|.++. .+...++||+|+|+|++++. +|++.++|+++|++||+|++|||+++.++++++++++++++
T Consensus 158 i~~~~--~~~~~~~GT~I~L~Lk~d~~-e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~ 234 (677)
T 2cg9_A 158 VTLDE--VNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEK 234 (677)
T ss_dssp EEECC--SSCCCSSEEEEEEEECTTGG-GGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------
T ss_pred EeecC--CCCCCCCCeEEEEEEcchhh-ccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccc
Confidence 98852 12356899999999999998 99999999999999999999999998666544444322110
Q ss_pred -CC---CCCCcc-c---cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccce
Q 005150 309 -EE---GEEQPE-G---EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGE 380 (711)
Q Consensus 309 -~~---~~~~~~-~---~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~ 380 (711)
++ +..+++ + ++++++|++++++++|+.+|+.+|||+|+|++|++|+|.+||++++++|++||+|+||++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~ 314 (677)
T 2cg9_A 235 KDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 314 (677)
T ss_dssp ---------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSS
T ss_pred ccccccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEeccccc
Confidence 00 000111 1 123455667777899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHH
Q 005150 381 VEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIM 460 (711)
Q Consensus 381 ~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I 460 (711)
++|+||||||+.+||++|+ ++...++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 315 ~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I 392 (677)
T 2cg9_A 315 LEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 392 (677)
T ss_dssp SCEEEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHH
T ss_pred ceEEEEEEEcCCCchhhhh-hhhccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHH
Confidence 9999999999999999986 2445789999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCce
Q 005150 461 RKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNA 540 (711)
Q Consensus 461 ~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~ 540 (711)
|+.|++|++++|.+|| +++++|++||++||++||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.
T Consensus 393 ~~~l~kkvl~~l~~la--~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~ 470 (677)
T 2cg9_A 393 RKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKN 470 (677)
T ss_dssp HHHHHHHHHHHHHHHH--SCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCE
T ss_pred HHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCce
Confidence 9999999999999999 47899999999999999999999999999999999999998777899999999999999999
Q ss_pred EEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHH
Q 005150 541 IYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNL 618 (711)
Q Consensus 541 IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~ 618 (711)
|||++|+|++++++|||+|.|+++|||||||++||||+||++|.+|+|++|++|+++ ++|++.+++++ ++.+++|++
T Consensus 471 IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~ 549 (677)
T 2cg9_A 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEP 549 (677)
T ss_dssp EEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHH
T ss_pred EEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 98876443322 445678999
Q ss_pred HHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 619 LCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 619 L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
||+|||++|+++|.+|++|+||+++|||||++++||+++|+|||++|+++++.+.+++.++++|||||+||||++|..+
T Consensus 550 L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~ 628 (677)
T 2cg9_A 550 LTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKR 628 (677)
T ss_dssp HHHHHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999877666666677889999999999999999764
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2e-140 Score=1210.33 Aligned_cols=583 Identities=51% Similarity=0.902 Sum_probs=492.8
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..|++.||+++++|+++|+++||+++++|||||||||+||++|+||.++++++.+.++..+.|+|.+++++++|+|+|||
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnG 100 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 100 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999999887777899999999888999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCC-CCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~-~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
+|||++||.++|++||+||++.|+++++.....+ .+...||||||||||+||||++|+|+||+.+ +.+|.|+++| +.
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~-~~~~~W~s~g-g~ 178 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NE 178 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTT-SCCEEEEESS-SC
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC-CceEEEEEeC-Ce
Confidence 9999999999999999999999998887310000 4678999999999999999999999999987 5799999999 88
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
|++.+.. .+...++||+|+|+|+++++ +|++.++|+++|++||.|+++||+++++++. +
T Consensus 179 ~ti~~~~--~~~~~~~GT~I~L~Lk~d~~-Efle~~~I~~ivkkys~fi~~PI~~~~~~~~------~------------ 237 (666)
T 2o1u_A 179 FSVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTG------G------------ 237 (666)
T ss_dssp CEEEECT--TCCSSSSEEEEEEEECTTTT-TSSSTTHHHHHHHHHSTTCCSCEEEEECC---------------------
T ss_pred EEEEecc--cCCCCCCCeEEEEEEccchh-hhccHHHHHHHHHHHHhhCCCceEEeccccc------c------------
Confidence 9998763 22346899999999999999 9999999999999999999999999775310 0
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
. ++++.+|+++|+++|+|+++++++++|+|.+||++++++|.+||.++|+++||+++|+|+||+|+.+|+++
T Consensus 238 ---~-----~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~ 309 (666)
T 2o1u_A 238 ---G-----GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGL 309 (666)
T ss_dssp ------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC--
T ss_pred ---c-----cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhh
Confidence 0 11246899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc-ccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhh
Q 005150 398 EEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDIS 476 (711)
Q Consensus 398 ~~~~~-~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la 476 (711)
+.... ...++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|++|++|++.|++|++++|++++
T Consensus 310 ~~~~~~~~~~~i~LYVn~vfI~d~~~-~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~ 388 (666)
T 2o1u_A 310 FDEYGSKKSDYIKLYVRRVFITDDFH-DMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA 388 (666)
T ss_dssp ----------CEEEEETTEEEESCCC-TTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhccccccCCeEEEEcCeEeeCchh-hhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 75111 35789999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hccChHHHH-HHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhC
Q 005150 477 QSENKEDYK-KFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (711)
Q Consensus 477 ~~~d~e~y~-~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~s 555 (711)
+ ++|+ +||++||++||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|
T Consensus 389 --~--e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~s 464 (666)
T 2o1u_A 389 --D--EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESS 464 (666)
T ss_dssp --H--HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTC
T ss_pred --H--HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhC
Confidence 3 8999 9999999999999999999999999999999998777899999999999999999999999999999999
Q ss_pred hhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHH-hCCcee
Q 005150 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQ-LGDKVA 632 (711)
Q Consensus 556 P~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~-L~~kV~ 632 (711)
||+|.|+++|||||||++||||+||++|.+|+|++|++|++++++|++.+++++ ++.+++|++||+|||++ |+++|+
T Consensus 465 p~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~ 544 (666)
T 2o1u_A 465 PFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIE 544 (666)
T ss_dssp GGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTTEE
T ss_pred cHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCcee
Confidence 999999999999999999999999999999999999999999999876554433 45577899999999999 999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhc--C-CCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQAL--G-DTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 633 ~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~--~-~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
+|++|+||++||||+|++++||+++|||||+||++ . ++.+..++.++++|||||+||||++|.++
T Consensus 545 ~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~ 612 (666)
T 2o1u_A 545 KAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRR 612 (666)
T ss_dssp EEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHH
T ss_pred EEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHh
Confidence 99999999999999999999999999999999987 3 34445567889999999999999999764
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=2.2e-137 Score=1182.25 Aligned_cols=572 Identities=41% Similarity=0.732 Sum_probs=489.1
Q ss_pred cceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 005150 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (711)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 159 (711)
.|+|.||+++++|+++|+++||+++++|||||||||+||++|+||.++++++.+.++..+.|+|.+++++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988877778899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCC--CCCeEEEEEecCCc
Q 005150 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR--SDKQYVWEAEADSS 237 (711)
Q Consensus 160 GMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~--~~~~~~w~~~~~~~ 237 (711)
|||++||.++|++||+||++.|+++++.. ...+...||+||+||||+||||++|+|+||+.+ .+.+|.|++++++.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhccc--ccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999998887631 124668999999999999999999999999987 46799999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
|++.+.+ ..++||+|+|+|++++. +|++.++|+++|++||.|+++||++..+ + +++ |
T Consensus 162 ~~i~~~~-----~~~~GT~I~L~Lk~d~~-Efl~~~~i~~ivkkys~fi~~PI~~~~~-----e--~~~----~------ 218 (624)
T 2ioq_A 162 YTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR-----E--EKD----G------ 218 (624)
T ss_dssp CEEEEEC-----CSSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHHTTCSSCEEEEEE-----E--ECS----S------
T ss_pred EEEEECC-----CCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec-----c--ccc----c------
Confidence 9998763 45899999999999998 9999999999999999999999999541 0 000 0
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
+ .+++|+++|+++|+|+++++++++++|.+||+.++++|.+||+++|++++|+++|+|+||+|+.+|+++
T Consensus 219 ------~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (624)
T 2ioq_A 219 ------E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (624)
T ss_dssp ------C----EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGG
T ss_pred ------c----cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccch
Confidence 0 145889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
+. +...++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++|++.|++|++++|++++
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~- 364 (624)
T 2ioq_A 289 WN--RDHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA- 364 (624)
T ss_dssp SS--SSCCCCEEEEESSCEEEEEEC-SSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hh--hcccCCeEEEECCEEeecchh-ccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 75 566889999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCC--ceeCHHHHHHhcccCCceEEEEecCCHHHHhhC
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~--~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~s 555 (711)
++||++|++||++||++||+|+++|+.|+++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|
T Consensus 365 ~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~s 444 (624)
T 2ioq_A 365 KDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (624)
T ss_dssp HHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHC
T ss_pred hcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 579999999999999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred hhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCc-hhHhh--HhhHHHHHHHHHHHHHHhCCcee
Q 005150 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVA 632 (711)
Q Consensus 556 P~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~-~e~~~--~~~~~~~~~L~~~~k~~L~~kV~ 632 (711)
||+|.|+++|||||||++||||+||++|.+|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|+
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~ 524 (624)
T 2ioq_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVK 524 (624)
T ss_dssp HHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSSSS
T ss_pred hHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCCce
Confidence 9999999999999999999999999999999999999999999988653 32222 45577899999999999999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhh
Q 005150 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNV 696 (711)
Q Consensus 633 ~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~ 696 (711)
+|++|+||+++|||+|++++||+++|+|||++|++ .++.++++|||||+||||++|.+
T Consensus 525 ~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~ 582 (624)
T 2ioq_A 525 DVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAAD 582 (624)
T ss_dssp EEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTS
T ss_pred EEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHh
Confidence 99999999999999999999999999999998753 24557899999999999999975
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=1.1e-132 Score=1131.12 Aligned_cols=548 Identities=42% Similarity=0.744 Sum_probs=441.2
Q ss_pred cceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 005150 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (711)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 159 (711)
.|++.||+++++|+++|+++||+||++|||||||||+||++|+||.++++++.+.++..+.|+|.+++++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988877778899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCC--CCeEEEEEecCCc
Q 005150 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADSS 237 (711)
Q Consensus 160 GMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~--~~~~~w~~~~~~~ 237 (711)
|||++||.++|++||+||++.|+++++.. ...+...||+||+||||+||||++|+|.||+.+. +.+|.|++.+++.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhcc--ccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999987766531 1236689999999999999999999999999873 6799999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccc
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (711)
|++.+.+ ..++||+|+|+|++++. +|++.++|+++|++||.|+++||++..+ + +++ |
T Consensus 162 ~~i~~~~-----~~~~GT~I~L~Lk~d~~-Efle~~~I~~iv~kys~fi~~PI~~~~~-----e--~~~----~------ 218 (559)
T 1y4s_A 162 YTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR-----E--EKD----G------ 218 (559)
T ss_dssp EEEEEEC-----CCSCEEEEEEEECTTCG-GGSCHHHHHHHHHHHHTTCSSCEEEEEE-----E--CST----T------
T ss_pred eEEeECC-----CCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec-----c--ccc----c------
Confidence 9998763 45899999999999998 9999999999999999999999999542 0 000 0
Q ss_pred cccccccccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 005150 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (711)
+ .+++|+++|+++|+|+++++++++++|.+||++++++|.+||+++|++++|+++|+|+||+|+.+|+++
T Consensus 219 ------~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (559)
T 1y4s_A 219 ------E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (559)
T ss_dssp ------S----CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTC
T ss_pred ------c----cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchh
Confidence 0 145889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q 005150 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (711)
Q Consensus 398 ~~~~~~~~~~i~LYv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~ 477 (711)
+. +...++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++|++.|++|++++|++|+
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~- 364 (559)
T 1y4s_A 289 WN--RDHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA- 364 (559)
T ss_dssp SS--SSCCCCEEEEETTEEEEEEEG-GGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hh--hcccCCeEEEEcCEEeecchh-hhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 75 567789999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHHhhhhcccCcccHHhhcCccceeeccCCC--ceeCHHHHHHhcccCCceEEEEecCCHHHHhhC
Q 005150 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (711)
Q Consensus 478 ~~d~e~y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~--~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~s 555 (711)
++||++|++||++||++||+|+++|+.|+++|++||||+||++++ +++||+||++|||++|+.|||++++|++++++|
T Consensus 365 ~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~s 444 (559)
T 1y4s_A 365 KDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (559)
T ss_dssp HHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTC
T ss_pred hcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 579999999999999999999999999999999999999998654 799999999999999999999999999999999
Q ss_pred hhHHHHhhCCcEEEEcCCCchHHHHHHHhhccCcceeeccccccCCCCc-hhHhh--HhhHHHHHHHHHHHHHHhCCcee
Q 005150 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVA 632 (711)
Q Consensus 556 P~lE~~~~kG~eVL~l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~-~e~~~--~~~~~~~~~L~~~~k~~L~~kV~ 632 (711)
||+|.|+++|||||||++||||+||++|.+|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|+
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~ 524 (559)
T 1y4s_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVK 524 (559)
T ss_dssp SSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC-----------------------------------------
T ss_pred hHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999999999999988653 22222 34577899999999999999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHh
Q 005150 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQA 666 (711)
Q Consensus 633 ~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~ 666 (711)
+|++|+||+++|||+|++++||+++|+|||++|+
T Consensus 525 ~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 525 DVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp ----------------------------------
T ss_pred EEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 9999999999999999999999999999999874
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1e-104 Score=874.28 Aligned_cols=363 Identities=47% Similarity=0.867 Sum_probs=324.3
Q ss_pred ccceeeccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEE
Q 005150 331 WDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRL 410 (711)
Q Consensus 331 ~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~L 410 (711)
++|+.+|+++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+||++|+ .+...++|+|
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikL 89 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFE-PNKKRNNIKL 89 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC-----CCCCCCSEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhh-hhhhcCCeeE
Confidence 478999999999999999999999999999999999999999999999999999999999999999986 2346789999
Q ss_pred EeeeeeeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 005150 411 YVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWEN 490 (711)
Q Consensus 411 Yv~rv~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~ 490 (711)
|||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|++++ +|+++|++||++
T Consensus 90 Yv~rVfI~D~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la--~d~e~Y~kFw~~ 166 (444)
T 3hjc_A 90 YVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKEDYKQFYEQ 166 (444)
T ss_dssp EETTEEEESCCG-GGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHH
T ss_pred EEeeeEeecchh-hhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred HhHHhhhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEE
Q 005150 491 FGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLY 570 (711)
Q Consensus 491 f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~ 570 (711)
||.+||+|+++|+.|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++||||||
T Consensus 167 fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~ 246 (444)
T 3hjc_A 167 FGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLF 246 (444)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEE
T ss_pred HhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEE
Confidence 99999999999999999999999999998778899999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEE
Q 005150 571 LIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLV 648 (711)
Q Consensus 571 l~dpiDe~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv 648 (711)
|++||||+||++|.+|+|++|++|+++++++++.+++++ ++.+++|++||+|+|++|+++|++|++|+||+++|||||
T Consensus 247 l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv 326 (444)
T 3hjc_A 247 MTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILV 326 (444)
T ss_dssp ECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEE
T ss_pred eCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEE
Confidence 999999999999999999999999999999876554432 456778999999999999999999999999999999999
Q ss_pred eCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 649 SGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 649 ~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
++++|||++|+|||++|++.++.+.+++.++++|||||+||||++|.++
T Consensus 327 ~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~ 375 (444)
T 3hjc_A 327 TSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRR 375 (444)
T ss_dssp BCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHH
T ss_pred cCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHH
Confidence 9999999999999999987665555678899999999999999999875
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1e-103 Score=862.40 Aligned_cols=356 Identities=48% Similarity=0.890 Sum_probs=311.9
Q ss_pred cCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeee
Q 005150 338 ETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFI 417 (711)
Q Consensus 338 ~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I 417 (711)
.++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+||++|+ .+..+++|+||||||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI 80 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE-NRKKKNNIKLYVRRVFI 80 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhh-hhhhccceeEEeeeeEE
Confidence 35799999999999999999999999999999999999999999999999999999999986 23467899999999999
Q ss_pred ccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhh
Q 005150 418 SDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKL 497 (711)
Q Consensus 418 ~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~ 497 (711)
+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++++ +|+++|++||++||.+||+
T Consensus 81 ~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~ 157 (448)
T 3q6m_A 81 MDNCE-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKL 157 (448)
T ss_dssp ESCCT-TSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHH
T ss_pred ecchh-hhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHh
Confidence 99999 99999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred hcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCchH
Q 005150 498 GCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDE 577 (711)
Q Consensus 498 G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe 577 (711)
|+++|..|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++||||
T Consensus 158 Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe 237 (448)
T 3q6m_A 158 GIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDE 237 (448)
T ss_dssp HHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHH
T ss_pred hhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHH
Confidence 99999999999999999999987778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCcc
Q 005150 578 VAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWS 655 (711)
Q Consensus 578 ~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s 655 (711)
+||++|.+|+|++|++|+++++++++.+++++ ++.+++|++||+|||++||++|++|++|+||++||||||++++|||
T Consensus 238 ~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s 317 (448)
T 3q6m_A 238 YCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWT 317 (448)
T ss_dssp HHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCC
T ss_pred HHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchh
Confidence 99999999999999999999999876654433 4556789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 656 ANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 656 ~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
++||||||+|+++++.+.+++.++++|||||+||||++|.++
T Consensus 318 ~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~ 359 (448)
T 3q6m_A 318 ANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQK 359 (448)
T ss_dssp HHHHHHCCC--------------CEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHH
Confidence 999999999988776665678889999999999999999865
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-101 Score=843.67 Aligned_cols=354 Identities=47% Similarity=0.852 Sum_probs=335.0
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 005150 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (711)
Q Consensus 339 ~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~ 418 (711)
++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+ .+...++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhh-hhhccCCeEEEEeeeEec
Confidence 4799999999999999999999999999999999999999999999999999999999886 234578999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhhh
Q 005150 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (711)
Q Consensus 419 d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G 498 (711)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++++ +++|+|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la--~~~e~y~kf~~~fg~~lK~G 156 (405)
T 2cge_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (405)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-hhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHhhhhhcch
Confidence 9999 99999999999999999999999999999999999999999999999999999 47999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCchHH
Q 005150 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 578 (711)
Q Consensus 499 ~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~ 578 (711)
+++|+.|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||+|++||||+
T Consensus 157 ~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~ 236 (405)
T 2cge_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (405)
T ss_dssp HHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHH
T ss_pred hccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccH
Q 005150 579 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSA 656 (711)
Q Consensus 579 ~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~ 656 (711)
||++|.+|+|++|++|+++ +++++.+++++ ++.++++++||+|||++|+++|.+|++|+||+++|||+|++++||++
T Consensus 237 ~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~ 315 (405)
T 2cge_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 315 (405)
T ss_dssp HHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCH
T ss_pred HHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccH
Confidence 9999999999999999999 88876544332 44577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 657 NMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 657 ~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
+|+|||++|+++++.+.+++.++++|||||+||||++|.+.
T Consensus 316 ~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~ 356 (405)
T 2cge_A 316 NMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKR 356 (405)
T ss_dssp HHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHh
Confidence 99999999987766666667889999999999999999864
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=8.1e-87 Score=692.60 Aligned_cols=286 Identities=47% Similarity=0.852 Sum_probs=241.3
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 005150 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (711)
Q Consensus 339 ~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~ 418 (711)
++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+ .+...++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhh-hhhccCCeEEEEeeeEee
Confidence 3699999999999999999999999999999999999999999999999999999999986 333578999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhhh
Q 005150 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (711)
Q Consensus 419 d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G 498 (711)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++++ +|+++|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~kf~~~fg~~lK~G 156 (288)
T 1hk7_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (288)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCchHH
Q 005150 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 578 (711)
Q Consensus 499 ~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiDe~ 578 (711)
+++|+.||++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||+|++||||+
T Consensus 157 i~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~ 236 (288)
T 1hk7_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (288)
T ss_dssp HHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHH
T ss_pred hcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhCC
Q 005150 579 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGD 629 (711)
Q Consensus 579 ~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~--~~~~~~~~~L~~~~k~~L~~ 629 (711)
||++|.+|+|++|++|+++ +++++.+++++ ++.+++|++||+|||++||+
T Consensus 237 ~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999 88865444322 34567899999999999974
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=4.3e-86 Score=691.55 Aligned_cols=290 Identities=41% Similarity=0.725 Sum_probs=247.4
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 005150 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (711)
Q Consensus 339 ~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~ 418 (711)
++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+ +...++|+||||||||+
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~--~~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--RDHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTS--TTCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhh--hhccCCeEEEEeceEee
Confidence 4799999999999999999999999999999999999999999999999999999999885 44678999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhhhh
Q 005150 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (711)
Q Consensus 419 d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK~G 498 (711)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|+++| ++|+++|++||++||.+||+|
T Consensus 80 D~~e-eLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la-~~d~e~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 80 DDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA-KDDAEKYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EEEG-GGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHTTH
T ss_pred cchh-hhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 579999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCC--CceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCch
Q 005150 499 CVEDSGNHKRLAPLLRFYTSKSE--EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (711)
Q Consensus 499 ~~eD~~~~e~l~~lLrF~Ts~~~--~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiD 576 (711)
+++|+.|+++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||+|++|||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999865 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCCchhHhhHhhHHHHHHHHHHHHHHhCCcee--EEEEeecCCCCCeEEEeC
Q 005150 577 EVAIQNLQTFNEKKFVDISKEDLELGDEDEVKERETKQEFNLLCDWIKQQLGDKVA--KVQVSKRLSSSPCVLVSG 650 (711)
Q Consensus 577 e~~l~~L~~~~~~~f~~V~~~~~~l~~~~e~~~~~~~~~~~~L~~~~k~~L~~kV~--~V~vS~rL~dsP~~lv~~ 650 (711)
|+||++|.+|+|++|++|+++++++++.+ ++.||++|. +|.+|+||++|||++++.
T Consensus 238 e~~i~~L~e~~gk~f~sV~k~~l~l~~~~------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLA------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp HHHTTTCCEETTEEEEETTC--------------------------------------------------------
T ss_pred HHHHHHHHhcCCcceEEeeccccCccccc------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999999875321 245688888 899999999999999863
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1.8e-83 Score=662.18 Aligned_cols=263 Identities=49% Similarity=0.889 Sum_probs=249.5
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeee
Q 005150 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (711)
Q Consensus 337 N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~ 416 (711)
|+++|||+|+|++||+|+|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+ .+..+++|+|||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE-NKKKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhh-hhhhcCCeeEEEEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999986 2346789999999999
Q ss_pred eccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhh
Q 005150 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (711)
Q Consensus 417 I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK 496 (711)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|+++| +|+|+|++||++||.+||
T Consensus 80 I~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK 156 (268)
T 3pry_A 80 IMDSCD-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA--EDKENYKKFYEAFSKNLK 156 (268)
T ss_dssp EESCCG-GGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred eecchh-hhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred hhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCch
Q 005150 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (711)
Q Consensus 497 ~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiD 576 (711)
+|+++|..|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.++++|||||+|++|||
T Consensus 157 ~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iD 236 (268)
T 3pry_A 157 LGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236 (268)
T ss_dssp HHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTH
T ss_pred hHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchH
Confidence 99999999999999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCC
Q 005150 577 EVAIQNLQTFNEKKFVDISKEDLELGD 603 (711)
Q Consensus 577 e~~l~~L~~~~~~~f~~V~~~~~~l~~ 603 (711)
|+||++|++|+|++|++|++++++|++
T Consensus 237 e~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 237 EYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHHHHHhcCCceeeecccccCCCcc
Confidence 999999999999999999999999864
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=3.4e-83 Score=658.42 Aligned_cols=257 Identities=48% Similarity=0.883 Sum_probs=241.0
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeee
Q 005150 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (711)
Q Consensus 337 N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~ 416 (711)
|+++|||+|+|++||+|||.+||++++++|++||+|+||++||+++|+||||||+.+|+++++ .+...++|+|||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTC-C----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhh-hhhccCCeEEEEeeeE
Confidence 788999999999999999999999999999999999999999999999999999999999886 2345789999999999
Q ss_pred eccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHhh
Q 005150 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (711)
Q Consensus 417 I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~lK 496 (711)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|+++| +|+|+|++||++||.+||
T Consensus 80 I~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la--~d~e~y~~f~~~fg~~lK 156 (260)
T 1usu_A 80 ITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIK 156 (260)
T ss_dssp EESCCT-TSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred eccchh-hhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhhhhc
Confidence 999999 99999999999999999999999999999999999999999999999999999 489999999999999999
Q ss_pred hhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCch
Q 005150 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (711)
Q Consensus 497 ~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpiD 576 (711)
+|+++|+.|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||+|++|||
T Consensus 157 ~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iD 236 (260)
T 1usu_A 157 LGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236 (260)
T ss_dssp HHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHH
T ss_pred chhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchH
Confidence 99999999999999999999998666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeecccc
Q 005150 577 EVAIQNLQTFNEKKFVDISKE 597 (711)
Q Consensus 577 e~~l~~L~~~~~~~f~~V~~~ 597 (711)
|+||++|.+|+|++|++|+++
T Consensus 237 e~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 237 EYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHHHHCEETTEEEEETTCC
T ss_pred HHHHHHHHhhCCceEEecccc
Confidence 999999999999999999997
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=3.2e-81 Score=647.57 Aligned_cols=260 Identities=42% Similarity=0.837 Sum_probs=232.2
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCcccc-ccccccceEEEeeee
Q 005150 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEI-MNPKTKNIRLYVKRV 415 (711)
Q Consensus 337 N~~~~iw~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~-~~~~~~~i~LYv~rv 415 (711)
|+++|||+|+|+++|+|+|.+||++++++|++||+|+|+++||+++|+||||||+.+|++++.. .....++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7889999999999999999999999999999999999999999999999999999999987542 234578999999999
Q ss_pred eeccCCCCCCCcccccccceeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHhHHh
Q 005150 416 FISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFL 495 (711)
Q Consensus 416 ~I~d~~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~I~~~l~~k~~~~l~~la~~~d~e~y~~f~~~f~~~l 495 (711)
||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|+++| ++|+|+|++||++||.+|
T Consensus 81 fI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la-~~d~e~y~kf~~~fg~~l 158 (263)
T 1y6z_A 81 FINDKFS-ESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLK-ETGGDKWTKFLNTFGKYL 158 (263)
T ss_dssp EEESCGG-GGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHHH
T ss_pred Eeecchh-hhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999 578999999999999999
Q ss_pred hhhcccCcccHHhhcCccceeeccCCCceeCHHHHHHhcccCCceEEEEecCCHHHHhhChhHHHHhhCCcEEEEcCCCc
Q 005150 496 KLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPI 575 (711)
Q Consensus 496 K~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~sL~eY~~rmke~Qk~IYY~~~~s~~~~~~sP~lE~~~~kG~eVL~l~dpi 575 (711)
|+|+++|+.|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++||++|.|+++|||||+|++||
T Consensus 159 K~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~i 238 (263)
T 1y6z_A 159 KIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238 (263)
T ss_dssp HHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHH
T ss_pred ccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcH
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH--hhccCcceeeccccc
Q 005150 576 DEVAIQNL--QTFNEKKFVDISKED 598 (711)
Q Consensus 576 De~~l~~L--~~~~~~~f~~V~~~~ 598 (711)
||+||++| ++|+|++|++|++++
T Consensus 239 De~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 239 DEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=2.3e-58 Score=480.01 Aligned_cols=253 Identities=50% Similarity=0.787 Sum_probs=224.6
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
...++|.||+|+++|+++|+++||+|+++|||||||||+||++|+||.++++|+.+.....+.|+|.+++++++|+|.||
T Consensus 21 ~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DN 100 (281)
T 3peh_A 21 ESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 100 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred hccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
|+|||+++|.++|++||+||++.|+++++. .+.+..+||||||||||+||||++|+|+||+++ +.+|.|++.+++.
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~---~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~-~~~~~Wes~g~g~ 176 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNND-DEQYIWESTADAK 176 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHH---TTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEEETTSC
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhc---cccccccccccCccchhhccccCEEEEEEecCC-CCEEEEEECCCcc
Confidence 999999999999999999999999999874 134678999999999999999999999999987 6799999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCC------CC
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE------EG 311 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~------~~ 311 (711)
|+|.+.+ .+...++||+|+|||++++. +|+++++|+++|++||+|++|||+++.++.++++++++++++ ++
T Consensus 177 fti~~~~--~~~~~~~GT~I~L~Lked~~-e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~ 253 (281)
T 3peh_A 177 FTIYKDP--RGATLKRGTRISLHLKEDAT-NLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYD 253 (281)
T ss_dssp EEEEECT--TCSTTSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSS
T ss_pred EEEEEcC--CCCCCCCCeEEEEEECCchh-hhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhcccccccc
Confidence 9999864 23467899999999999998 999999999999999999999999999998888887665221 11
Q ss_pred C--CCccccccccccccccccccceeec
Q 005150 312 E--EQPEGEKKTKKTTKTEKYWDWELAN 337 (711)
Q Consensus 312 ~--~~~~~~~~~~~~~~~~~~~~~~~~N 337 (711)
+ +++++++++|+|++++++++|+.+|
T Consensus 254 ~~e~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 254 SVKVEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp EEEECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred ccccccccccccCCcceEEEEEEeEecC
Confidence 1 2222244556788899999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=7.1e-54 Score=447.28 Aligned_cols=254 Identities=50% Similarity=0.828 Sum_probs=204.1
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..++|.||+++++|+++|+|+||+|+++|||||||||+||++|+||.++++++.+.....+.|+|.++.+..+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999888788899999999888999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhccc-CCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENND-LGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~-~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
+|||+++|.++|++||+||++.|+++++...+ ...+...||||||||||+||||++|+|.||+++ +.+|.|++.+ +.
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~-~~~~~w~s~g-g~ 161 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NE 161 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECS-SC
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecC-CcEEEEEEeC-CE
Confidence 99999999999999999999999988874100 014668999999999999999999999999987 5799999999 89
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCC-C------
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE-E------ 310 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~-~------ 310 (711)
|++.+.. .+...++||+|+|+|++++. +|++.++|+++|++||.|++|||+++.+++++++++++++++ +
T Consensus 162 ~~i~~~~--~~~~~~~GT~I~L~Lk~d~~-e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~ 238 (269)
T 1qy5_A 162 FSVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDS 238 (269)
T ss_dssp EEEEECT--TCSCSSSEEEEEEEECGGGG-GGGSHHHHHHHHHTTCTTCSSCEEEEEECC--------------------
T ss_pred EEEEecc--CCCcCCCCeEEEEEEcccch-hhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhccccc
Confidence 9998753 12346899999999999988 999999999999999999999999999988877776555221 0
Q ss_pred CC--CCccc--cccccccccccccccceeec
Q 005150 311 GE--EQPEG--EKKTKKTTKTEKYWDWELAN 337 (711)
Q Consensus 311 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~N 337 (711)
++ +++++ ++++|+|++++++++|+++|
T Consensus 239 ~~~~~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 239 DDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ---------------------CCCEEEEECC
T ss_pred ccccccccccccccccCCceEEEEeeeEecC
Confidence 11 11111 23466788889999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=8.6e-54 Score=436.60 Aligned_cols=210 Identities=50% Similarity=0.808 Sum_probs=186.8
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCC------------------------
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL------------------------ 133 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~------------------------ 133 (711)
++.|+|.||||+++||+||+|+||||++||||||||||+|||+|+| +++++|+.+
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999999999999999 888765432
Q ss_pred -------------CCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccc
Q 005150 134 -------------GDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQ 200 (711)
Q Consensus 134 -------------~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGq 200 (711)
+...++.|+|.+|++.++|+|+|||+|||++||.++|++||+||+++|+++++. ...+...|||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~---~~~d~~~IGq 177 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEE---GKADSNLIGQ 177 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHT---TSSCTTCGGG
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhc---ccccccccCc
Confidence 223457999999999999999999999999999999999999999999998874 1256789999
Q ss_pred cccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccC---CCCCCCCCCeEEEEEecCCCccCCCcHHHHHH
Q 005150 201 FGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREET---DPEKLLKRGTQITLYLKEDDKYEFSEPTRIQG 277 (711)
Q Consensus 201 FGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~---~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~ 277 (711)
|||||||+||||++|+|+|| . ++.+|.|++++++.|+|.+++. ..++..++||+|+||||+++. +|+++++|++
T Consensus 178 FGVGFySaFmVAdkV~V~Sk-~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~-e~le~~~ik~ 254 (272)
T 3ied_A 178 FGVGFYSSFLVSNRVEVYTK-K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECD-EYLEDYKLKE 254 (272)
T ss_dssp SCCGGGGGGGTEEEEEEEEE-S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGG-GGGSHHHHHH
T ss_pred ccceeheeeccCCEEEEEEc-C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChH-HhcCHHHHHH
Confidence 99999999999999999999 3 4789999999999999998630 123357899999999999999 9999999999
Q ss_pred HHHHhcCCCCCCeEEee
Q 005150 278 LVKNYSQFVSFPIYTWQ 294 (711)
Q Consensus 278 li~~ys~fi~~pI~~~~ 294 (711)
+|++||.|++|||+++.
T Consensus 255 likkys~fi~~PI~l~~ 271 (272)
T 3ied_A 255 LIKKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHHHCTTCCSCEEECC
T ss_pred HHHHHHhCCCCCeEEEe
Confidence 99999999999999975
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=4e-53 Score=432.60 Aligned_cols=210 Identities=53% Similarity=0.856 Sum_probs=195.8
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
+.+++.||+|+++|+++|+++||+|+++|||||||||+||++|+||.+++++..++....+.|+|.+|++.++|+|+|||
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 94 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG 94 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCC
Confidence 47899999999999999999999999999999999999999999999999998877778899999999989999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~ 238 (711)
+|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|.||+.+ +.+|.|++++++.|
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~----~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~-~~~~~W~s~~~g~f 169 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVVVITKHND-DEQYAWESSAGGSF 169 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSTTEE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhcc----cCCcccccccCcccccccccCCEEEEEEeeCC-CceeEEEECCCCcE
Confidence 99999999999999999999999998873 34678999999999999999999999999975 67999999999999
Q ss_pred EEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeeccc
Q 005150 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKS 297 (711)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~ 297 (711)
+|.+.+ ++..++||+|+||||+++. +|+++++|+++|++||+|++|||+++.+++
T Consensus 170 ti~~~~---~~~~~~GT~I~L~lk~d~~-e~l~~~~i~~lv~kys~fi~~pI~~~~~~~ 224 (239)
T 3nmq_A 170 TVRADH---GEPIGRGTKVILHLKEDQT-EYLEERRVKEVVKKHSQFIGYPITLYLEKE 224 (239)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHCTTCSSCEEECCCSC
T ss_pred EEEecC---CCcCCCCCEEEEEECCChH-HhcCHHHHHHHHHHHHhccCCceEEeeeee
Confidence 999863 3456899999999999998 999999999999999999999999988654
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=7.3e-50 Score=412.34 Aligned_cols=220 Identities=51% Similarity=0.830 Sum_probs=194.0
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
...+++.||+|+++|+++|+++||+++++|||||||||+||++|+||.+++++..+.....+.|+|.++.+..+|+|.||
T Consensus 35 ~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~Dn 114 (256)
T 3o0i_A 35 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 114 (256)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999888777889999999988999999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
|+||+++||..+|++||+||++.|.+.++. +.+...||+||+||||+|+||++|+|.||+.+ +.+|.|++.+++.
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~----~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~ 189 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGS 189 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTE
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhcc----cCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccce
Confidence 999999999999999999999999887762 34678999999999999999999999999976 7899999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccC
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE 306 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~ 306 (711)
|++.+.+ ....++||+|+|+||.+.. +|++.++|+++|++||+|++|||+++.++++++++++++
T Consensus 190 ~~v~~~~---~~~~~~GT~I~l~LK~~~~-e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~~ 254 (256)
T 3o0i_A 190 FTVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 254 (256)
T ss_dssp EEEEECC---SSCCSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHCTTCSSCEEECCC-----------
T ss_pred EEEeeCC---CCCCCCCcEEEEEEcCcch-hhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCcc
Confidence 9998863 2357899999999999988 999999999999999999999999999888777776554
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1e-48 Score=399.42 Aligned_cols=220 Identities=51% Similarity=0.830 Sum_probs=192.3
Q ss_pred CCcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 005150 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (711)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 157 (711)
...+++.||+|+++|+++|+++||+++.+|||||||||+||++++||.+++++..+.....+.|+|.++.+..+|+|.||
T Consensus 7 ~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~Dn 86 (228)
T 3t0h_A 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 86 (228)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999998877777788999999888899999999
Q ss_pred CCCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc
Q 005150 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (711)
Q Consensus 158 GiGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~ 237 (711)
|+||++++|..+|++||+|+++.|.+.++. +.+...||+||+||+|+|+||++|+|.||+.+ +.+|.|++.+++.
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~----~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~ 161 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGS 161 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTE
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhcc----cCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCce
Confidence 999999999999999999999999877752 24678999999999999999999999999976 6799999999999
Q ss_pred eEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccC
Q 005150 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE 306 (711)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~ 306 (711)
|.+.+.+ ....++||+|+|+||++.+ +|++.++|+++|++||.|++|||+++.++++++++++++
T Consensus 162 ~~v~~~~---~~~~~~GT~I~v~Lk~~~~-E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~~~ 226 (228)
T 3t0h_A 162 FTVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 226 (228)
T ss_dssp EEEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHSTTCSSCEEECCC-----------
T ss_pred EEEeecC---CCCCCCCcEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCCCcc
Confidence 9998863 2356899999999999998 999999999999999999999999999887777766443
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.8e-47 Score=393.10 Aligned_cols=212 Identities=53% Similarity=0.874 Sum_probs=177.1
Q ss_pred cceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 005150 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (711)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 159 (711)
.+++.||+++++|+++|+++||++|++|||||||||+||++++||.++++++.+.+...+.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 58999999999999999999999999999999999999999999999999988777777899999988889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHhhhcccC-CCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce
Q 005150 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (711)
Q Consensus 160 GMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~-~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~ 238 (711)
||+++||.++|++||+||++.|+++++...+. ..+...||+|||||||+|+||++|+|.||+.+ +.+|.|++++ +.|
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~-~~~~~w~~~g-g~~ 166 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NEF 166 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEESS-SCE
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCC-CceEEEEEeC-CEE
Confidence 99999999999999999999998877631000 14667999999999999999999999999987 4689999998 889
Q ss_pred EEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecc
Q 005150 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEK 296 (711)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~ 296 (711)
++.+.. .....++||+|+|+|+++.. +|++.++|+++|++||.|++|||++++++
T Consensus 167 ~i~~~~--~~~~~~~GT~I~l~Lk~~~~-~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 167 SVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEEECT--TCSCSSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEEecc--CCCCCCCCeEEEEEECCcch-hhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 888753 12346899999999999988 99999999999999999999999998753
No 20
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=1.2e-44 Score=377.28 Aligned_cols=217 Identities=51% Similarity=0.831 Sum_probs=191.1
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..+++.||+++++|+++|+++||++|.+|||||||||+||++++||..+++++.......+.|+|..+.+..+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999988776667788999888888899999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~ 238 (711)
+||+++||..+|++||+||++.|+++++. ..+...||+||+||||+|++|++|+|.||+.+ +.+|.|++.+++.|
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~----~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~w~~~~~~~~ 198 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSF 198 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHT----TCCGGGGGGGTCGGGGHHHHEEEEEEEEECTT-SCCEEEEECSTTEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhcc----ccchhhcCCCCCCccccccCCCEEEEEEecCC-CceEEEEEcCCceE
Confidence 99999999999999999999999888763 34678999999999999999999999999987 56899999998999
Q ss_pred EEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccc
Q 005150 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEE 304 (711)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~ 304 (711)
.+.+.+ ....++||+|+|+|+++.. +|++.++|+++|++||.|++|||++++++++++++++
T Consensus 199 ~i~~~~---~~~~~~GT~I~l~Lk~~~~-e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~~~~ 260 (264)
T 1yc1_A 199 TVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 260 (264)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCSSCEEECCCC--------
T ss_pred EEeecC---CCCCCCCeEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCEEEeeccccccccCC
Confidence 988753 2346899999999999887 9999999999999999999999999987765555443
No 21
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=2.1e-44 Score=366.97 Aligned_cols=214 Identities=51% Similarity=0.829 Sum_probs=191.5
Q ss_pred cceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 005150 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (711)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 159 (711)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++..+.....+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48999999999999999999999999999999999999999999999999887766677889998887778999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceE
Q 005150 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (711)
Q Consensus 160 GMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~ 239 (711)
||++++|..+|++||+||++.|.++++. ..+...||+||+||||+|++|++|+|.|++.+ +.++.|++++++.|.
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~----~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~-~~~~~~~~~~~~~~~ 157 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNAGGSFT 157 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhc----cCCcccCCccchhHHHhhhcCCeeEEEEecCC-CceeEEEeCCCCceE
Confidence 9999999999999999999999888863 34678999999999999999999999999986 669999999999998
Q ss_pred EEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeeccccccc
Q 005150 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE 301 (711)
Q Consensus 240 i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~ 301 (711)
+.+.. .....++||+|+|+|++++. +|++.++|++++++||.|+++||+++.++.++++
T Consensus 158 i~~~~--~~~~~~~GT~I~l~Lk~~~~-~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~~~ 216 (220)
T 2wer_A 158 VTLDE--VNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKE 216 (220)
T ss_dssp EEECS--SSCCCSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHCTTCCSCEEECCCCCCC--
T ss_pred eeccc--CCCCCCCCeEEEEEECcchH-HhCCHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 88752 12356899999999999988 9999999999999999999999999887644333
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=1.8e-40 Score=341.02 Aligned_cols=208 Identities=45% Similarity=0.767 Sum_probs=185.5
Q ss_pred CcceecchhhHHHHHHHHHHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 005150 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (711)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 158 (711)
..|++.||+++++|+++|+++||++|.+||||||+||+||++++|+..+.++++......+.|+|.++.++..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 35799999999999999999999999999999999999999999999998887766667788999888888899999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCC--CCeEEEEEecCC
Q 005150 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADS 236 (711)
Q Consensus 159 iGMt~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~--~~~~~w~~~~~~ 236 (711)
+||+++||..+|++||+||++.|.++++.. ...+...+|+||+||+|+|++|++|+|.|++.+. ..++.|.+++++
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~--~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 180 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 180 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSC--HHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccc--cccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCC
Confidence 999999999999999999999887765410 0123578999999999999999999999999876 569999999988
Q ss_pred ceEEEeccCCCCCCCCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEee
Q 005150 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQ 294 (711)
Q Consensus 237 ~~~i~~~~~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~ 294 (711)
.|.+.+.. ..++||+|+|+|+++.. +|++.++|+++|++||.|+++||+++.
T Consensus 181 ~~~i~~~~-----~~~~GT~V~v~Lk~~~~-~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 181 EYTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEEC-----CCSCEEEEEEEECTTCG-GGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred cEEEeeCC-----CCCCCEEEEEEEcCchh-hhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 99888742 45799999999999888 999999999999999999999999964
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.87 E-value=3.1e-22 Score=215.47 Aligned_cols=283 Identities=17% Similarity=0.213 Sum_probs=183.1
Q ss_pred HccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005150 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (711)
Q Consensus 98 ~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~eel~~~l~tIa~S 176 (711)
-..+.++..+|+|||+||+||.+ ..|.|.++.+ ...|+|.|||+||+++++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 45567899999999999999942 2566665544 3689999999999999999999999887
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCC-ceEEEeccCCCCCCCCCCe
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS-SSYVIREETDPEKLLKRGT 255 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~-~~~i~~~~~~~~~~~~~GT 255 (711)
....+ +.+. ....+|++|+|++|+++++ +++|.|++.+...+|.|..+|+. ...+.+. ..++||
T Consensus 81 K~~~~-~d~~-------~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~GT 145 (333)
T 1b63_A 81 KIASL-DDLE-------AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA------AHPVGT 145 (333)
T ss_dssp SCCSH-HHHH-------TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE------CCCSEE
T ss_pred Ccccc-chhh-------hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc------cCCCCC
Confidence 32211 1111 2357899999999999998 89999999876678888777664 4444443 357999
Q ss_pred EEEEE-ecCCC--ccCCC-----cHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccccccccccccc
Q 005150 256 QITLY-LKEDD--KYEFS-----EPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKKTTKT 327 (711)
Q Consensus 256 ~I~L~-Lk~~~--~~e~~-----~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (711)
+|+++ |-... ...|+ +..+|.+++++|+.. ...+.+
T Consensus 146 ~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~-~p~v~~----------------------------------- 189 (333)
T 1b63_A 146 TLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA-RFDVTI----------------------------------- 189 (333)
T ss_dssp EEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHH-CTTCEE-----------------------------------
T ss_pred EEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhcc-CCCcEE-----------------------------------
Confidence 99998 11100 00221 126889999999952 222333
Q ss_pred cccccceeeccCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCcccccccc-c
Q 005150 328 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPK-T 405 (711)
Q Consensus 328 ~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~-~ 405 (711)
.+.++++++|..++.. ....+.+++..+++ .+...+..++...++ +.+.|++..|... +.. .
T Consensus 190 ------~l~~ng~~~~~~~~~~-~~~~~~~~i~~i~G~~~~~~li~i~~~~~~-~~v~G~i~~p~~~--------~~~~~ 253 (333)
T 1b63_A 190 ------NLSHNGKIVRQYRAVP-EGGQKERRLGAICGTAFLEQALAIEWQHGD-LTLRGWVADPNHT--------TPALA 253 (333)
T ss_dssp ------EEEETTEEEEEECCCC-TTCCTHHHHHHHHCHHHHHHEEEEEEEETT-EEEEEEEECGGGC--------CTTGG
T ss_pred ------EEEECCEEEEecCCCC-CCchHHHHHHHHhChhhHhheEEEEecCCC-EEEEEEEEcCccc--------cCCCC
Confidence 2233444555544321 11234556777764 334456666666655 8999998888743 223 5
Q ss_pred cceEEEeeeeeeccCCC--------CCCCcc--c-ccccceeecCCCCCCccc---hHhh-h-ccHHHHHHHHHHH
Q 005150 406 KNIRLYVKRVFISDDFD--------GELFPR--Y-LSFVKGVVDSDDLPLNVS---REIL-Q-ESRIVRIMRKRLV 465 (711)
Q Consensus 406 ~~i~LYv~rv~I~d~~~--------~~llP~--y-l~Fv~GVVDS~dLplNvS---RE~l-Q-~~~~l~~I~~~l~ 465 (711)
..+.+|||+|+|.+..- ..++|. | ..++..-+|.+.+-.||. ||.. + +..++..|++.|.
T Consensus 254 ~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~ 329 (333)
T 1b63_A 254 EIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVL 329 (333)
T ss_dssp GCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHH
T ss_pred CcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHHH
Confidence 68999999999987420 023343 1 235556677777778873 3433 2 2344455544443
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.82 E-value=2.6e-20 Score=202.64 Aligned_cols=167 Identities=19% Similarity=0.163 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHccCCC-----chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC-CCcEEEEEeCCCCC
Q 005150 88 EVSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGM 161 (711)
Q Consensus 88 e~~~Ll~lL~~~LYs~-----~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DnGiGM 161 (711)
.|+.|.+.++++|+++ +..+|+|||+||+||. ...|.|.+.. +...|+|.|||+||
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~------------------a~~I~I~i~~~~~~~I~V~DnG~Gi 75 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAG------------------ATNIDLKLKDYGVDLIEVSDNGCGV 75 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCC
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCcEEEEEEECCCCc
Confidence 3778888888999887 5889999999999993 2356665543 34689999999999
Q ss_pred CHHHHHHHHhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEE
Q 005150 162 TKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVI 241 (711)
Q Consensus 162 t~eel~~~l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~ 241 (711)
+.+++...+.++++|.... .. ........|++|+|++|++++| +++|.|++.+...+|.|..+++|.+...
T Consensus 76 ~~~~l~~~f~~~~tsK~~~----~~----dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~ 146 (365)
T 1h7s_A 76 EEENFEGLTLKHHTSKIQE----FA----DLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQK 146 (365)
T ss_dssp CGGGSGGGGC--------------C----CTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEE
T ss_pred CHHHHHHHhhhcccccccc----cc----chhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEee
Confidence 9999999898888772110 00 0112245799999999999998 9999999988667999998755655432
Q ss_pred eccCCCCCCCCCCeEEEEE-ecCCCc--c-CCC-----cHHHHHHHHHHhcCCC
Q 005150 242 REETDPEKLLKRGTQITLY-LKEDDK--Y-EFS-----EPTRIQGLVKNYSQFV 286 (711)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~-Lk~~~~--~-e~~-----~~~~i~~li~~ys~fi 286 (711)
.. ...++||+|+++ |-.... . +|+ +..+|.+++++|+..-
T Consensus 147 ~~-----~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~ 195 (365)
T 1h7s_A 147 TP-----YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIIS 195 (365)
T ss_dssp EE-----CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred cc-----cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcC
Confidence 21 145799999998 322110 0 122 2368899999999743
No 25
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.4e-20 Score=200.52 Aligned_cols=282 Identities=17% Similarity=0.143 Sum_probs=173.6
Q ss_pred ccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC-CCcEEEEEeCCCCCCHHHHHHHHhhhhccC
Q 005150 99 SLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMTKEELVDCLGTIAQSG 177 (711)
Q Consensus 99 ~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DnGiGMt~eel~~~l~tIa~Sg 177 (711)
....++..+|+|||+||+||. ...|.|.+.. +...|+|.|||+||+.+++...+..+++|.
T Consensus 21 evi~~~~~vv~eLv~NaiDA~------------------a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 21 QVITDLTTAVKELVDNSIDAN------------------ANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp HHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CcccCHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 344567889999999999994 2356666533 346899999999999999987766666652
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEE-EeccCCCCCCCCCCeE
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV-IREETDPEKLLKRGTQ 256 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i-~~~~~~~~~~~~~GT~ 256 (711)
...+ . ........|.+|+|++|+++|| +++|+||+.+ +.+|.|..+++|.+.. .+. ..++||+
T Consensus 83 ~~~~----~----Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~-~~~~~~~~~~~G~~~~~~~~------~~~~GTt 146 (367)
T 3h4l_A 83 IAKF----Q----DVAKVQTLGFRGEALSSLCGIA-KLSVITTTSP-PKADKLEYDMVGHITSKTTT------SRNKGTT 146 (367)
T ss_dssp ---------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST-TCEEEEEECTTCCEEEEEEE------CCSSEEE
T ss_pred CCch----h----hhhhhhccCccchHHHHhhccC-EEEEEEEECC-CCEEEEEEcCCCcEEeeccc------cCCCCeE
Confidence 2111 0 0112356799999999999998 6999999987 7899999975555433 222 4579999
Q ss_pred EEEE-------------ecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCccccccccc
Q 005150 257 ITLY-------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (711)
Q Consensus 257 I~L~-------------Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (711)
|++. ++.... +| .+|.+++++|+.. ...|.+.... .+.
T Consensus 147 V~v~~LF~n~P~R~k~flk~~~~-e~---~~i~~~l~~~Al~-~p~v~~~l~~-------~~~----------------- 197 (367)
T 3h4l_A 147 VLVSQLFHNLPVRQKEFSKTFKR-QF---TKCLTVIQGYAII-NAAIKFSVWN-------ITP----------------- 197 (367)
T ss_dssp EEEESTTTTCHHHHHHHHTTHHH-HH---HHHHHHHHHHHHH-CTTCEEEEEE-------ECT-----------------
T ss_pred EEEchhhccCchhhhhhccchHH-HH---HHHHHHHHHHHhh-CCCeEEEEEE-------cCC-----------------
Confidence 9995 343322 33 6899999999863 2234332210 000
Q ss_pred cccccccccceeeccCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeec----------------------ccce
Q 005150 324 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFT----------------------TEGE 380 (711)
Q Consensus 324 ~~~~~~~~~~~~~N~~~~iw~r~~~~i~~eey~~fyk~~~~-~~~~pl~~~h~~----------------------~eg~ 380 (711)
-.+.+.+|..++. ....+....+++ .+...|..+... ..+.
T Consensus 198 ------------~~~~~~~~~t~~~----~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (367)
T 3h4l_A 198 ------------KGKKNLILSTMRN----SSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYK 261 (367)
T ss_dssp ------------TSCEEEEEECCSS----CCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCCCCC------------CCE
T ss_pred ------------CCcceEEEECCCC----CCHHHHHHHHhCHHHHhccEEEecccccccccccccccccccccccccCCc
Confidence 0011122322222 123456667774 455666655551 2235
Q ss_pred eEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCC---------CCCCCc-cc-ccccceeecCCCCCCccc--
Q 005150 381 VEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFP-RY-LSFVKGVVDSDDLPLNVS-- 447 (711)
Q Consensus 381 ~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rv~I~d~~---------~~~llP-~y-l~Fv~GVVDS~dLplNvS-- 447 (711)
+.++|++.-|.... .+.....+.+|||+|+|.+.. . .+++ .| +.|+.=-+|.+.+-.||.
T Consensus 262 ~~i~G~is~p~~~~------~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~-~~~~~~~P~~~L~l~~~p~~vDVNVhP~ 334 (367)
T 3h4l_A 262 IRVKGYISQNSFGC------GRNSKDRQFIYVNKRPVEYSTLLKCCNEVYK-TFNNVQFPAVFLNLELPMSLIDVNVTPD 334 (367)
T ss_dssp EEEEEEEECCSTTC------SBSSSSSEEEEETTEEECCHHHHHHHHHHHH-TTCSSCBCCEEEEEECCGGGEECCCSSS
T ss_pred EEEEEEEeCCcccc------cCCCCCcEEEEECCCEecCHHHHHHHHHHHH-hcCCCCCcEEEEEEEcChHHcceeECCC
Confidence 88999887776431 134567899999999998653 1 2222 12 222333456777777887
Q ss_pred -hHhhh--ccHHHHHHHHHHHH
Q 005150 448 -REILQ--ESRIVRIMRKRLVR 466 (711)
Q Consensus 448 -RE~lQ--~~~~l~~I~~~l~~ 466 (711)
||..- +..++..|++.|.+
T Consensus 335 K~eV~f~~e~~i~~~i~~~l~~ 356 (367)
T 3h4l_A 335 KRVILLHNERAVIDIFKTTLSD 356 (367)
T ss_dssp TTCCEETTHHHHHHHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHHH
Confidence 77653 33555555555444
No 26
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.4e-20 Score=197.18 Aligned_cols=283 Identities=18% Similarity=0.197 Sum_probs=168.2
Q ss_pred HHHHH-HHccCCCchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHH
Q 005150 92 LMDLI-VHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDC 169 (711)
Q Consensus 92 Ll~lL-~~~LYs~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~eel~~~ 169 (711)
+...| +......+..+|.|||+||+||. ...|.|.++.+ ...|+|.|||+||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~------------------a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAK------------------STSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcC------------------CCEEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 33444 34455678999999999999993 23555555444 357999999999999999877
Q ss_pred HhhhhccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce-EEEeccCCCC
Q 005150 170 LGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVIREETDPE 248 (711)
Q Consensus 170 l~tIa~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~-~i~~~~~~~~ 248 (711)
+..+++|-...+ . ........|.+|+|++|+.+|+ +++|+||..++..+|.|...++... .+.+.
T Consensus 78 ~~~~~tsK~~~~----~----dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----- 143 (348)
T 3na3_A 78 CERFTTSKLQSF----E----DLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----- 143 (348)
T ss_dssp TSTTCCSSCCCC-----------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE-----
T ss_pred hccccccccCcc----h----hhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe-----
Confidence 666666521111 0 0112356799999999999998 8999999988778999988765322 23333
Q ss_pred CCCCCCeEEEEE------------ecCCCccCCCcHHHHHHHHHHhcCCCCCCeEEeecccccccccccCCCCCCCCCcc
Q 005150 249 KLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPE 316 (711)
Q Consensus 249 ~~~~~GT~I~L~------------Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (711)
..++||+|++. |+.... + ..+|.+++++|+. +...|.+
T Consensus 144 -~~~~GTtV~v~~LF~n~P~R~k~lk~~~~-e---~~~i~~~l~~~Al-~~p~v~f------------------------ 193 (348)
T 3na3_A 144 -AGNQGTQITVEDLFYNIATRRKALKNPSE-E---YGKILEVVGRYSV-HNAGISF------------------------ 193 (348)
T ss_dssp -CCCSEEEEEEESTTTTCHHHHHTSCCHHH-H---HHHHHHHHHHHHH-HCTTCEE------------------------
T ss_pred -cCCCCcEEEECcccccCchhhhhccccHH-H---HHHHHHHHHHHHh-hCCCeEE------------------------
Confidence 35799999996 333222 2 3689999999986 2223333
Q ss_pred ccccccccccccccccceeeccCCccc-ccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccc-eeEEEEEEEeeCCC
Q 005150 317 GEKKTKKTTKTEKYWDWELANETKPIW-MRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEG-EVEFRSVLYIPGMG 393 (711)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~N~~~~iw-~r~~~~i~~eey~~fyk~~~~-~~~~pl~~~h~~~eg-~~~~~~ll~iP~~~ 393 (711)
.+.++++..+ .+.+.. ....+....+++ .+...|..++...++ .+.++|++..|...
T Consensus 194 -----------------~l~~~g~~~~~~~~~~~---~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~i~G~is~p~~~ 253 (348)
T 3na3_A 194 -----------------SVKKQGETVADVRTLPN---ASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYS 253 (348)
T ss_dssp -----------------EEEETTCSSCSEECCTT---CCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEEEECSSCC
T ss_pred -----------------EEEECCEEEEEeecCCC---CCHHHHHHHHhChHhHhhcEEEEeecCCccEEEEEEEeCCccC
Confidence 2233333331 111111 134556666764 455667666666543 48899988878643
Q ss_pred CCCccccccccccceEEEeeeeeeccCC---------CCCCCcc--c-ccccceeecCCCCCCccc---hHhh--hccHH
Q 005150 394 PLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPR--Y-LSFVKGVVDSDDLPLNVS---REIL--QESRI 456 (711)
Q Consensus 394 p~~~~~~~~~~~~~i~LYv~rv~I~d~~---------~~~llP~--y-l~Fv~GVVDS~dLplNvS---RE~l--Q~~~~ 456 (711)
. +...+.+|||+|+|.+.. . .++|. | ..|+.=-+|.+.+-.||. ||.. .++.+
T Consensus 254 --------~-~~~~q~~fVNgR~v~~~~l~~ai~~~y~-~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i 323 (348)
T 3na3_A 254 --------V-KKCIFLLFINHRLVESTSLRKAIETVYA-AYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESI 323 (348)
T ss_dssp --------B-SSCEEEEEETTEECCCTTHHHHHHHHHH-TTSCTTCBCEEEEEEECC----------------------C
T ss_pred --------C-CcccEEEEECCeEecCHHHHHHHHHHHH-HhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHH
Confidence 1 234689999999998874 3 56664 2 334444578888888887 7754 34455
Q ss_pred HHHHHHHHHH
Q 005150 457 VRIMRKRLVR 466 (711)
Q Consensus 457 l~~I~~~l~~ 466 (711)
+..|++.|.+
T Consensus 324 ~~~i~~~v~~ 333 (348)
T 3na3_A 324 LERVQQHIES 333 (348)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 27
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.79 E-value=1.2e-19 Score=168.32 Aligned_cols=74 Identities=28% Similarity=0.462 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccCCCceEEECCCChHHHHHhhc
Q 005150 618 LLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNVR 697 (711)
Q Consensus 618 ~L~~~~k~~L~~kV~~V~vS~rL~dsP~~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLI~~L~~~ 697 (711)
.+++|+|++||++|++|++|+||+++|||||++++||+++|||||++|+++ ++.++++|||||+||||++|.+.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999987532 34678999999999999999753
No 28
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.25 E-value=1e-10 Score=128.14 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=101.7
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHHHhh-hhc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGT-IAQ 175 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee--------l~~~l~t-Ia~ 175 (711)
...|.|||.||+||... .....|.|.++.+ +.|+|+|||.||+.++ +...|++ +|.
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 57899999999999521 1245788887765 4899999999999988 5666666 443
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCC
Q 005150 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (711)
Q Consensus 176 Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~G 254 (711)
| + +. ...-...-|..|+|..++-.++++++|+|+..+ ..|......+.. ..+.+.. .....++|
T Consensus 98 s-K------f~----~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g--~~~~~~~G 162 (390)
T 1s16_A 98 G-K------FS----NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVG--TCGKRNTG 162 (390)
T ss_dssp S-C------SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEE--ECCTTCCE
T ss_pred C-C------cC----CCcccccCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecc--cccCCCCc
Confidence 3 1 21 111223679999999999999999999999753 455544444321 1122221 00012689
Q ss_pred eEEEEEecCCC-ccCCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 255 TQITLYLKEDD-KYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 255 T~I~L~Lk~~~-~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
|+|++.-.... ...-.+...|.+.++.++-. -..-|.+..
T Consensus 163 T~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 163 TSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp EEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred eEEEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999721110 00124567899999988852 234455443
No 29
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.24 E-value=1.4e-11 Score=123.35 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=90.3
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH--------HH-HHhhhh
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VD-CLGTIA 174 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel--------~~-~l~tIa 174 (711)
+...|+|||.||+||... .....|.|.++.+ +.|+|+|||.||+.+++ .. +...+|
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ha 82 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 82 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeecc
Confidence 578999999999999632 1244777777654 58999999999999983 33 223344
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCC
Q 005150 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKR 253 (711)
Q Consensus 175 ~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~ 253 (711)
.| +| .. .......|..|+|+.|+..++++++|+|+..+ ..|.....++.. ..+.... +....+.
T Consensus 83 ts---K~----~~----~~~~~s~GfrGeglssinalS~~l~v~t~~~g--~~~~~~~~~G~~~~~~~~~g--~~~~~~~ 147 (201)
T 3fv5_A 83 GG---KF----SN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVG--TCGKRNT 147 (201)
T ss_dssp ------------------------------CHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEE--ECCTTCC
T ss_pred cc---Cc----CC----CcccccCcccceecchhhcccceEEEEEEecC--ceEEEEEeCCEEcccceecc--cCCCCCC
Confidence 44 22 21 11123689999999999999999999999754 344444443321 1222221 0001479
Q ss_pred CeEEEEEecCCCc---cCCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 254 GTQITLYLKEDDK---YEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 254 GT~I~L~Lk~~~~---~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
||+|++.- +.. ..-.+..+|.+.+++|+-. -...|.+..
T Consensus 148 GT~V~f~P--dr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 148 GTSVHFWP--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEEEEEEE--CGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CeEEEEEE--CHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99999962 211 0224567899999999842 224455544
No 30
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.19 E-value=3.8e-10 Score=122.72 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=90.6
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
+...|+|||.||+||... .....|.|.++.++ .|+|+|||.||+. |+.- ..+|.|
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lhags------- 85 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVATGA------- 85 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHTTT-------
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeecCC-------
Confidence 467999999999999521 13457888887654 8999999999999 5543 445554
Q ss_pred HhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce-----EEEeccCCCCCCCCCCeEEE
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-----YVIREETDPEKLLKRGTQIT 258 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~-----~i~~~~~~~~~~~~~GT~I~ 258 (711)
++.. .......+.-| |..++-+++++++|+|+..+ ..|.....++ .- ...+.. ..+...++||+|+
T Consensus 86 Kf~~----~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G-~~~~~~~~~~~l~-~~g~~~~~GT~V~ 156 (369)
T 3cwv_A 86 GFLG----RPPGDGWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHG-HPQGEGAAVTPME-PMPVSAERGVRVH 156 (369)
T ss_dssp TGGG----SSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETT-EECTTCEEESSCC-CCSSCCSEEEEEE
T ss_pred CcCC----CcccccccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeCC-cccccccccCCce-EecccCCCCCEEE
Confidence 2221 00001112225 88888889999999999754 3555544443 21 011111 0112247999999
Q ss_pred EEecCCCccCC----CcHHHHHHHHHHhcC
Q 005150 259 LYLKEDDKYEF----SEPTRIQGLVKNYSQ 284 (711)
Q Consensus 259 L~Lk~~~~~e~----~~~~~i~~li~~ys~ 284 (711)
+.- +.. .| .+...|.+.+++++-
T Consensus 157 f~P--d~~-~F~~~~~e~~~l~~rl~~lA~ 183 (369)
T 3cwv_A 157 FVP--DAT-IFEVLAFDRARLSRRCNELAA 183 (369)
T ss_dssp EEE--CTT-TCSCCCCCHHHHHHHHHHHHH
T ss_pred EEE--CHH-HhCCccccHHHHHHHHHHHcC
Confidence 982 222 22 456789999999884
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.18 E-value=1e-10 Score=128.21 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=99.5
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhcc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~--------~l~tIa~S 176 (711)
...|+|||.||+|+.-+ + ....|.|.++.+ ..|+|+|||.||+.+++.. .|.. ...
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~-~~~ 97 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNT-LHS 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHS-SCE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheee-eee
Confidence 46899999999999632 1 234777777655 4999999999999998743 3332 223
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCCe
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGT 255 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~GT 255 (711)
|.+ | .. .......|..|+|+.++..++++++|+|+..+ ..|......+.. ..+.+.. +....++||
T Consensus 98 ~~k-f----~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~--~~~~~~~GT 164 (390)
T 1kij_A 98 GGK-F----EQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVG--EAPRGKTGT 164 (390)
T ss_dssp ESG-G----GG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEE--ECGGGCCEE
T ss_pred ccc-c----cC----ccccccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeec--cccCCCCCc
Confidence 222 2 11 11123568999999999999999999999754 455444444322 2233221 000147999
Q ss_pred EEEEEecCC--CccCCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 256 QITLYLKED--DKYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 256 ~I~L~Lk~~--~~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
+|++.-... .. .-.+...|.+.++.++-. -...|.+..
T Consensus 165 ~V~f~Pd~~~F~~-~~~~~~~l~~rl~~~A~lnpgv~i~l~d 205 (390)
T 1kij_A 165 RVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVAGLKLVFQD 205 (390)
T ss_dssp EEEEEECHHHHTT-CCCCHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEEChHHhCC-ccccHHHHHHHHHHhcCcCCCcEEEEEe
Confidence 999972111 00 123557889999988841 224444443
No 32
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.16 E-value=5.1e-10 Score=122.66 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=100.9
Q ss_pred CchhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHHHh-hh
Q 005150 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLG-TI 173 (711)
Q Consensus 103 ~~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee--------l~~~l~-tI 173 (711)
++...|+|||.||+||..+ .....|.|.++.+ +.|+|+|||.||+.++ +...|+ .+
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4577999999999999631 1234788888765 4999999999999988 444555 33
Q ss_pred hccCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCC
Q 005150 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLK 252 (711)
Q Consensus 174 a~Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~ 252 (711)
|.| + +. ...-...-|..|+|..++-.++.+++|+|+..+ ..|......+.. ..+.... ...+
T Consensus 99 ags-K------f~----~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~----~~~~ 161 (391)
T 1ei1_A 99 AGG-K------FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG----ETEK 161 (391)
T ss_dssp EES-C------SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE----ECSC
T ss_pred ccC-C------cC----CCcccccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceecc----CcCC
Confidence 333 1 21 111224679999999999999999999999754 455444443311 0011110 1247
Q ss_pred CCeEEEEEecCCC-cc-CCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 253 RGTQITLYLKEDD-KY-EFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 253 ~GT~I~L~Lk~~~-~~-e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
+||+|++.-.... .. .-.+...|.+.++.++-. -..-|.+..
T Consensus 162 ~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 162 TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp CEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 9999999722110 00 113457888999888742 234455543
No 33
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.90 E-value=1.5e-09 Score=121.77 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=96.8
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f 181 (711)
..+|+|||+||+||...-. ..+.+.|.+..+. +...|+|+|||+||+.+++...+....++++
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk--- 99 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSK--- 99 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-C---
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccc---
Confidence 3578999999999964200 0013344444322 3357999999999999999887766533211
Q ss_pred HHHhhhcccCCCCCccccccccccceeeeeeeE-----EEEEEecCCCCCeEEEEEe------cCCceEEEeccCCCCCC
Q 005150 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEAE------ADSSSYVIREETDPEKL 250 (711)
Q Consensus 182 ~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~-----v~V~Sr~~~~~~~~~w~~~------~~~~~~i~~~~~~~~~~ 250 (711)
.......|.+|+|++++..+++. +.|.|+..+...++.|... ++..+...+.. ...
T Consensus 100 ----------~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~---~~~ 166 (471)
T 1mu5_A 100 ----------YVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE---NTR 166 (471)
T ss_dssp ----------CCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE---CCT
T ss_pred ----------cccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc---CCC
Confidence 01224568899999999999886 9999997653335655432 11223333221 123
Q ss_pred CCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcC
Q 005150 251 LKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (711)
Q Consensus 251 ~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 284 (711)
..+||+|++.++.++. ++ ..+|.+++++|+.
T Consensus 167 ~~~GT~V~v~l~~~~~-e~--~~~I~~~l~~~al 197 (471)
T 1mu5_A 167 GFHGTSVAISIPGDWP-KA--KSRIYEYIKRTYI 197 (471)
T ss_dssp TCCEEEEEEEEECCHH-HH--HHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEcCCcc-hH--HHHHHHHHHHHHh
Confidence 5799999999987544 32 2578899998873
No 34
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.86 E-value=2.4e-09 Score=121.52 Aligned_cols=159 Identities=21% Similarity=0.233 Sum_probs=101.1
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f 181 (711)
..+|+|||+||+||...- ...+.+.|.+..+. +...|+|+|||+||+.+++...|....++++
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk--- 98 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSK--- 98 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCC---
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCC---
Confidence 357899999999996310 00014556655433 3457999999999999999887765522211
Q ss_pred HHHhhhcccCCCCCccccccccccceeeeeee-----EEEEEEecCCCCCeEEEEE--e----cCCceEEEeccCCCCCC
Q 005150 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEA--E----ADSSSYVIREETDPEKL 250 (711)
Q Consensus 182 ~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad-----~v~V~Sr~~~~~~~~~w~~--~----~~~~~~i~~~~~~~~~~ 250 (711)
.......|.+|+|++++..+++ ++.|.|+..+...++.+.. . ++......+.. ...
T Consensus 99 ----------~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~---~~~ 165 (530)
T 2zbk_B 99 ----------YVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE---NTR 165 (530)
T ss_dssp ----------CCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE---CCS
T ss_pred ----------cccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC---CCC
Confidence 0122456899999999999987 6999998765333555542 1 11122222221 112
Q ss_pred CCCCeEEEEEecCCCccCCCcHHHHHHHHHHhcC-CCCCCeEEe
Q 005150 251 LKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ-FVSFPIYTW 293 (711)
Q Consensus 251 ~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~-fi~~pI~~~ 293 (711)
..+||+|++.++.++. ++ ...+.+++++|+. +-...+.+.
T Consensus 166 ~~~GT~V~v~l~~~~~-e~--~~~i~~~l~~~Al~~p~v~~~l~ 206 (530)
T 2zbk_B 166 GFHGTSVAISIPGDWP-KA--KSRIYEYIKRTYIITPYAEFIFK 206 (530)
T ss_dssp SCCEEEEEEEEECCHH-HH--HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCcEEEEEeccchh-hH--HHHHHHHHHHHHHHCCCcEEEEE
Confidence 5799999999987644 32 2678899998875 223444443
No 35
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.76 E-value=1.9e-08 Score=110.29 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=95.5
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHHHhh-hhc
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGT-IAQ 175 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee--------l~~~l~t-Ia~ 175 (711)
...+.|||.||+||... +.....|.|.++.+++.|+|+|||.||+.++ +.-.|+. +|.
T Consensus 54 ~~lv~EivdNsiDe~~~-------------~g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQR-------------DPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CTTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhh-------------cCCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 45789999999999622 1123477777777668999999999999987 4445553 333
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCC
Q 005150 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (711)
Q Consensus 176 Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~G 254 (711)
| + | .. ..-...-|..|+|..++-+++.+++|.++....+..|......+.. -...+.. .....+|
T Consensus 121 s-K--f----~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig---~~~~~~G 186 (400)
T 1zxm_A 121 S-N--Y----DD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELK---PFNGEDY 186 (400)
T ss_dssp S-C--C----CG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEE---ECCSCCE
T ss_pred C-C--C----CC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceec---cCCCCCc
Confidence 3 1 2 11 1122377999999999999999999999875445566555444322 1111111 0123589
Q ss_pred eEEEEEecCC---CccCCCcHHH---HHHHHHHhcC
Q 005150 255 TQITLYLKED---DKYEFSEPTR---IQGLVKNYSQ 284 (711)
Q Consensus 255 T~I~L~Lk~~---~~~e~~~~~~---i~~li~~ys~ 284 (711)
|+|++.-... .+ +| +.+. |.+.++.++-
T Consensus 187 T~V~F~Pd~~iF~~~-ef-~~~~~~~l~~rlrelA~ 220 (400)
T 1zxm_A 187 TCITFQPDLSKFKMQ-SL-DKDIVALMVRRAYDIAG 220 (400)
T ss_dssp EEEEEEECGGGGTCS-SC-CHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEChHHhCce-ee-cHHHHHHHHHHHHHHHh
Confidence 9999983221 12 33 3344 6677777663
No 36
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.73 E-value=2e-08 Score=101.71 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=94.0
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH--------HHHHhhhhc
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VDCLGTIAQ 175 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel--------~~~l~tIa~ 175 (711)
+...++|||.||+|+... .....|.|.++.+ ..|+|+|||.||+.++. .-.|+.+-.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 468999999999999532 1234777777764 58999999999999863 222332222
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCC
Q 005150 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (711)
Q Consensus 176 Sgt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~G 254 (711)
+| + | . ...-...-|..|+|..++-.++++++|+++..+ ..|..+...+.. ..+.... ....+|
T Consensus 101 g~-K-f----d----~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g----~~~~~G 164 (220)
T 4duh_A 101 GG-K-F----D----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG----ETEKTG 164 (220)
T ss_dssp SS-C-C----C----TTC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEE----ECSCCE
T ss_pred CC-C-c----C----CCccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceecc----ccCCCC
Confidence 22 1 2 1 112235779999999999999999999999765 344333333211 1111111 134799
Q ss_pred eEEEEEecCCC-c-cCCCcHHHHHHHHHHhcCCCC--CCeEEeec
Q 005150 255 TQITLYLKEDD-K-YEFSEPTRIQGLVKNYSQFVS--FPIYTWQE 295 (711)
Q Consensus 255 T~I~L~Lk~~~-~-~e~~~~~~i~~li~~ys~fi~--~pI~~~~~ 295 (711)
|+|+..-.... . ..-++.+.|.+.++.++- +. ..|.++++
T Consensus 165 T~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~-ln~gv~i~l~de 208 (220)
T 4duh_A 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSF-LNSGVSIRLRDK 208 (220)
T ss_dssp EEEEEEECTTTCCSSCSCCHHHHHHHHHHHHH-HCTTSEEEEEET
T ss_pred cEEEEEECHHHhCCcccCCHHHHHHHHHHHHh-cCCCCEEEEEcc
Confidence 99998732211 0 012455788888888883 43 55555543
No 37
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.66 E-value=1.6e-08 Score=116.55 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=98.3
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC---CcEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f 181 (711)
...|+|||+||+||... ......|.|.+..+ ...|+|+|||.||+.+++...+..+..++ .|
T Consensus 39 ~~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats--kf 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS--RF 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC--cc
Confidence 45789999999999742 11122555554333 25799999999999999988765542221 11
Q ss_pred HHHhhhcccCCCCCccccccccccceeeeeeeE-----EEEEEecCCCCCeEEEEE-----ecCCceEEEeccCCCCCCC
Q 005150 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEA-----EADSSSYVIREETDPEKLL 251 (711)
Q Consensus 182 ~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~-----v~V~Sr~~~~~~~~~w~~-----~~~~~~~i~~~~~~~~~~~ 251 (711)
. ......|..|+|+.++..+++. +.|.|+..+...++.+.. .+.+........ ....
T Consensus 104 ----~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~---~~~~ 170 (621)
T 2q2e_B 104 ----H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR---DWFR 170 (621)
T ss_dssp ----C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEEC---CCSC
T ss_pred ----c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccc---cCCC
Confidence 1 0112348999999999999877 599998765446777664 222222111111 1235
Q ss_pred CCCeEEEEEecCCCccCCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 252 KRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 252 ~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
.+||+|++.++.+.. +. ....|.+.+++|+-. -...|.+..
T Consensus 171 ~~GT~V~~~f~~~~~-~~-~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 171 PHGTQIELEMRAAYV-KG-RRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp SSCCCEEEECSCCCC-CC-SSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred CCCCEEEEEecCccc-hH-HHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 799999999875443 21 024577777777642 234444443
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.60 E-value=3e-07 Score=93.38 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=95.7
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH-------HHHHHhhhhccC
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE-------LVDCLGTIAQSG 177 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee-------l~~~l~tIa~Sg 177 (711)
...++|+|.||+|+... .....|.|.++.+ ..|+|+|||.||+.++ +.-.|+..-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 46789999999999531 1234788877764 5899999999999998 444444332222
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc----eE-EEeccCCCCCCCC
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS----SY-VIREETDPEKLLK 252 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~----~~-i~~~~~~~~~~~~ 252 (711)
+|-+ ..-...-|..|+|..++-.++.+++|+++..+ ..|..+...++. .. +.+. ....
T Consensus 107 --Kfd~--------~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~~-----~~~~ 169 (226)
T 4emv_A 107 --KFGQ--------GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGTA-----LKSK 169 (226)
T ss_dssp ---------------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEEC-----CTTC
T ss_pred --ccCc--------cceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEeccc-----CCCC
Confidence 2311 11235779999999999999999999999855 344433333311 11 1121 1247
Q ss_pred CCeEEEEEecCCC-ccCCCcHHHHHHHHHHhcCCC--CCCeEEeec
Q 005150 253 RGTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQFV--SFPIYTWQE 295 (711)
Q Consensus 253 ~GT~I~L~Lk~~~-~~e~~~~~~i~~li~~ys~fi--~~pI~~~~~ 295 (711)
.||+|+..-.... ...-++.+.|.+.++.++- + ...|.+.++
T Consensus 170 ~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~-ln~gv~i~l~de 214 (226)
T 4emv_A 170 TGTKVTFMPDATIFSTTDFKYNTISERLNESAF-LLKNVTLSLTDK 214 (226)
T ss_dssp CEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHH-HHCSCEEEEEET
T ss_pred CCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhh-cCCCCEEEEEec
Confidence 9999998732211 0012456788888888873 4 356666554
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.33 E-value=8.5e-07 Score=97.25 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=88.7
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHHHhhhhcc
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQS 176 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel-------~~~l~tIa~S 176 (711)
+...+.|+|.||+|+..+ .....|.|.++.+ +.|+|+|||.||+.+.. .....+.-..
T Consensus 51 ~~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lha 115 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHA 115 (408)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--
T ss_pred cchhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEeccc
Confidence 467899999999999421 1234777777654 58999999999999873 2332333333
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCC---ceE-EEeccCCCCCCCC
Q 005150 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS---SSY-VIREETDPEKLLK 252 (711)
Q Consensus 177 gt~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~---~~~-i~~~~~~~~~~~~ 252 (711)
|.+ |-+ ..-...-|..|+|..++-.++.+++|+++..+ ..|..+...+. ... +.+. ....
T Consensus 116 ggK-fd~--------~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~-----~~~~ 179 (408)
T 3lnu_A 116 GGK-FNN--------RNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTV-----GKKN 179 (408)
T ss_dssp ---------------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEEC-----CTTC
T ss_pred CCC-cCC--------CceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccC-----cCCC
Confidence 322 311 11224679999999999999999999999765 33433333321 111 1111 1246
Q ss_pred CCeEEEEEecCCC-ccCCCcHHHHHHHHHHhcCC-CCCCeEEee
Q 005150 253 RGTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (711)
Q Consensus 253 ~GT~I~L~Lk~~~-~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 294 (711)
.||+|+..-.... ...-++.+.|.+.++.++-. -...|.+.+
T Consensus 180 ~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 180 TGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp CEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 9999998732210 00124567788888887741 234566644
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.28 E-value=1.6e-06 Score=86.33 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=86.0
Q ss_pred chhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 104 ~~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
+...++|||.||+|+.-. .....|.|.++.+ +.|+|.|||.||+.+ .+++|+.... +
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e 88 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H
T ss_pred hHHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c
Confidence 467899999999998421 1134677776654 499999999999997 4556643321 1
Q ss_pred HhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc-eEEEeccCCCCCCCCCCeEEEEEec
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGTQITLYLK 262 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~~~GT~I~L~Lk 262 (711)
.+ |+ .-++=.++.+++|.|+..+ ..|..+...+.. ..+.... .....||+|+..-
T Consensus 89 -------------~i--~t--~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~----~~~~~GT~V~F~P- 144 (198)
T 3ttz_A 89 -------------VI--LT--SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVG----TTDKTGTVIRFKA- 144 (198)
T ss_dssp -------------HH--HH--TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE----ECSCCEEEEEEEE-
T ss_pred -------------cc--ce--eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceecc----CCCCCCcEEEEEE-
Confidence 11 22 3333456789999998865 344443333311 1111111 1347999999872
Q ss_pred CCCccCC-----CcHHHHHHHHHHhcCCCC--CCeEEeec
Q 005150 263 EDDKYEF-----SEPTRIQGLVKNYSQFVS--FPIYTWQE 295 (711)
Q Consensus 263 ~~~~~e~-----~~~~~i~~li~~ys~fi~--~pI~~~~~ 295 (711)
+.. -| .+...|.+.++.++- +. ..|.+.++
T Consensus 145 -d~~-iF~~~~~~~~~~l~~rlrelA~-ln~gv~i~l~de 181 (198)
T 3ttz_A 145 -DGE-IFTETTVYNYETLQQRIRELAF-LNKGIQITLRDE 181 (198)
T ss_dssp -CTT-TCCSCCCCCHHHHHHHHHHHHH-HSTTCEEEEEEC
T ss_pred -CHH-HhccCCccCHHHHHHHHHHHhh-cCCCCEEEEEee
Confidence 222 22 455788889988883 43 45555543
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.93 E-value=2.2e-05 Score=86.59 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=81.3
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhccC
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQSG 177 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~--------~l~tIa~Sg 177 (711)
..+.|+|.||+|+... +.....|.|.++.++..|+|+|||.||+.+.... .|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~-------------~g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVR-------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHH-------------CTTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHh-------------cCCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 4789999999999632 1123478888877768999999999999775221 233333333
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCce----EEEeccCCCCCCCCC
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS----YVIREETDPEKLLKR 253 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~----~i~~~~~~~~~~~~~ 253 (711)
+ | . .+.-...-|.-|+|.-.+=.++.+++|+++...++..|......+..- .+... .....
T Consensus 134 K--f----d----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~-----~~~~t 198 (418)
T 1pvg_A 134 N--Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY-----KKGPS 198 (418)
T ss_dssp C--C----C----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC-----CSSCC
T ss_pred c--c----C----CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeeccc-----CCCCC
Confidence 2 1 1 111224669999999888899999999999632244443333222101 12221 12368
Q ss_pred CeEEEEEec
Q 005150 254 GTQITLYLK 262 (711)
Q Consensus 254 GT~I~L~Lk 262 (711)
||+|+..-.
T Consensus 199 GT~V~F~PD 207 (418)
T 1pvg_A 199 YTKVTFKPD 207 (418)
T ss_dssp EEEEEEEEC
T ss_pred ceEEEEEEC
Confidence 999998743
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.28 E-value=0.00021 Score=65.93 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=45.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||.||..+.. .+.+.|.+..+.+.-.|.|.|||.||+.+++...+...-++.
T Consensus 49 ~il~nLl~NA~~~~~---------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~-------- 105 (150)
T 1ysr_A 49 LAVDNAIANAVKHGG---------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS-------- 105 (150)
T ss_dssp HHHHHHHHHHHHTTC---------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHhcCC---------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCC--------
Confidence 356789999999831 133455555555557799999999999999876553222110
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
...-+..|+|++.+-.++
T Consensus 106 ---------~~~~~g~GlGL~i~~~~~ 123 (150)
T 1ysr_A 106 ---------TASHSGSGLGLALVAQQA 123 (150)
T ss_dssp -----------------CCCHHHHHHH
T ss_pred ---------CCCCCCCCcCHHHHHHHH
Confidence 011245789988776664
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.24 E-value=0.00011 Score=71.73 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=32.9
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||.||+.+.. ....|.|...... |.|.|||.||+.+++...+....++
T Consensus 120 ~il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~~~--------- 172 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFYRP--------- 172 (222)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhccC---------
Confidence 467899999999841 2235666654433 9999999999999887654322111
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
....-+..|+|++-+-.++
T Consensus 173 --------~~~~~~g~GlGL~i~~~i~ 191 (222)
T 3jz3_A 173 --------PGQTATGSGLGLSIVQRIA 191 (222)
T ss_dssp -----------------CTHHHHHHHH
T ss_pred --------CCCCCCcccccHHHHHHHH
Confidence 0011245799987776553
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.23 E-value=0.00041 Score=75.41 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=63.7
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||+||+.|.....-. ....+.+.|.+..+.+.-.|+|+|||.||+.+++...|...-+..... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~---~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHES-------SLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP---QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-------CSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------
T ss_pred HHHHHHHHHHHHHhhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCC---Cc
Confidence 46779999999997531100 001123555555555556799999999999999887654322211000 00
Q ss_pred hhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEEEEecC
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (711)
.......+.+|+|++-+-.+++ ..+ |...+... .+.||+++|+|..
T Consensus 304 ------~~~~~~~~G~GLGL~i~~~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 ------GTGGTPLAGFGYGLPISRLYAK-------YFQ------------GDLQLFSM-------EGFGTDAVIYLKA 349 (394)
T ss_dssp ----------------CCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred ------ccCCCCCCCccCCHHHHHHHHH-------HhC------------CEEEEEec-------CCCceEEEEEecC
Confidence 0012345678999987766643 122 23334332 2579999999864
No 45
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.17 E-value=0.00045 Score=75.16 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=68.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||.||+.|.....-. ....+.+.|.+..+.+.-.|.|+|+|.||+.+++...|...-+..... ..
T Consensus 233 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~---~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQEN-------QPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP---VM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-------SSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC-----
T ss_pred HHHHHHHHHHHHHHHhcccc-------cCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCC---Cc
Confidence 46789999999997531100 001234556655555567899999999999999987664322211000 00
Q ss_pred hhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEEEEecC
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (711)
. .......+.+|+|++-+-.+++ ..+ |...+... .+.||+++|+|..
T Consensus 303 ~-----~~~~~~~~G~GLGL~i~~~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 D-----NSRNAPLAGFGYGLPISRLYAK-------YFQ------------GDLNLYSL-------SGYGTDAIIYLKA 349 (394)
T ss_dssp ---------CCCSSCSSCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred C-----cCCCCCCCCcccCHHHHHHHHH-------HhC------------CEEEEEec-------CCccEEEEEEeCC
Confidence 0 0022345678999987766643 122 23334332 2579999999864
No 46
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.11 E-value=0.00037 Score=64.20 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=36.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f 95 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIF 95 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHh
Confidence 466799999999941 2345555555556789999999999999876433
No 47
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.10 E-value=0.00041 Score=70.13 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=36.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~ 168 (711)
.++.+||.||+++.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 478899999999842 1234555555555567899999999999987754
No 48
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.04 E-value=0.00063 Score=74.35 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=67.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.+|.+||.||+.|.....-. ....+.+.|.+..+.+.-.|.|+|||.||+.+++...|...-+....
T Consensus 246 ~il~NLl~NAik~t~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~------ 312 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHAN-------RGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR------ 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-------TCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC------
T ss_pred HHHHHHHHHHHHHHhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCC------
Confidence 46789999999997531100 00122455555555555779999999999999887654322111000
Q ss_pred hhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEEEEecC
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (711)
. .. ........|.+|+|++-+-.+++ ..+ |...+... .+.||+++|+|..
T Consensus 313 ~-~~-~~~~~~~~~G~GLGL~Ivr~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 313 P-RV-ETSRAVPLAGFGYGLPISRLYAQ-------YFQ------------GDLKLYSL-------EGYGTDAVIYIKA 362 (407)
T ss_dssp C-CS-SCCSCCCSSCTTCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred C-Cc-cccCCCCCCCcCCCHHHHHHHHH-------HhC------------CEEEEEEc-------CCCceEEEEEECC
Confidence 0 00 00012345778999977766643 122 23334332 2579999999854
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.03 E-value=0.00018 Score=68.61 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=47.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecC--CCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
.+|.+||.||+.+.. ..+.+.|.+.... +.-.|+|.|||.||+.+++...+....+. ..
T Consensus 46 ~il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~-~~---- 106 (177)
T 3sl2_A 46 QVLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRV-DK---- 106 (177)
T ss_dssp HHHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCC-C-----
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccC-CC----
Confidence 367789999999841 1244566664433 34568999999999998876544322111 00
Q ss_pred HhhhcccCCCCCccccccccccceeeeee
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
......+..|+|++.+-.++
T Consensus 107 ---------~~~~~~~g~GlGL~iv~~~~ 126 (177)
T 3sl2_A 107 ---------ARTRKLGGTGLGLAIAKEMV 126 (177)
T ss_dssp --------------CCCCCCHHHHHHHHH
T ss_pred ---------CCCCCCCCCCcCHHHHHHHH
Confidence 01122356899988766553
No 50
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.00 E-value=0.00027 Score=76.64 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=39.5
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++.+||.||+.|.....- ......+.+.|.+..+.+.-.|+|+|||.||+.+++...|
T Consensus 241 ~il~NLl~NAik~~~~~~~------~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF 299 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHL------DTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVM 299 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCT------TCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTT
T ss_pred HHHHHHHHHHHHHhhcccc------CCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhc
Confidence 5788999999999753100 0000112455665555556779999999999999886544
No 51
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.00 E-value=0.0003 Score=65.84 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=48.4
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||+||+.+. .+.+.|.+..+.+.-.|.|.|||.||+.+++...+....+.
T Consensus 50 ~il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~--------- 104 (161)
T 1bxd_A 50 RAVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRG--------- 104 (161)
T ss_dssp HHHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCC---------
T ss_pred HHHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeC---------
Confidence 35678999998872 24456666655556779999999999998875433211111
Q ss_pred hhcccCCCCCccccccccccceeeeee
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~va 212 (711)
.....-+..|+|++-+-.++
T Consensus 105 -------~~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 105 -------DSARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp -------SCCCCCCCCSCCCCTTHHHH
T ss_pred -------CCCCCCCCcccCHHHHHHHH
Confidence 01111256899998776664
No 52
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.96 E-value=0.0006 Score=74.89 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=64.8
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHh
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~~ 185 (711)
.++.+||.||+.|.....-.. + ...+.+.|.+..+.+.-.|+|+|||.||+.+++...|...-+. ... ...
T Consensus 256 ~vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~-~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYST-APR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCccccc-CCC--CCc
Confidence 467899999999975421000 0 0012455555555556789999999999999987655322211 100 000
Q ss_pred hhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCceEEEeccCCCCCCCCCCeEEEEEecC
Q 005150 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (711)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (711)
. .......+.+|+|++-+-.+++ ..+ |...+... .+.||+++|+|..
T Consensus 327 ~-----~~~~~~~~G~GLGL~I~k~iv~-------~~g------------G~I~v~s~-------~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 E-----PTRAAPLAGFGYGLPISRLYAR-------YFQ------------GDLKLYSM-------EGVGTDAVIYLKA 373 (419)
T ss_dssp -----------CC--CTTHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred c-----ccCCCCcCCeecCHHHHHHHHH-------HhC------------CEEEEEec-------CCCCEEEEEEecC
Confidence 0 0012345678999877766643 112 33334432 2579999999864
No 53
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=96.94 E-value=0.00074 Score=62.23 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=50.0
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~~ 184 (711)
..++.|||.||+.+... . ...+.+.|.+..+.+.-.|+|+|||.||+ ++...+... .++
T Consensus 41 ~~il~~l~~Nai~h~~~--------~---~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~-~~~------- 99 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYN--------N---DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPL-FTT------- 99 (145)
T ss_dssp HHHHHHHHHHHHHTTST--------T---CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHhcC--------C---CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhccc-ccC-------
Confidence 35789999999987421 0 01234455555555557799999999999 554433211 110
Q ss_pred hhhcccCCCCCccccccccccceeeeeeeEEEEEEe
Q 005150 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (711)
Q Consensus 185 ~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr 220 (711)
. ...+..|+|++-+-.+++++.+.+.
T Consensus 100 --------~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 100 --------K--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp --------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred --------C--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 0 0123578999887777665544443
No 54
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0035 Score=77.10 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=82.6
Q ss_pred hhHHHhhhhHhh-HHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH-------HHHHHhhhhccC
Q 005150 106 VFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE-------LVDCLGTIAQSG 177 (711)
Q Consensus 106 iflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee-------l~~~l~tIa~Sg 177 (711)
..+.|.|.||+| |++ +..--.|.|+++.++++|+|+|||-||+-+. ..+...++...|
T Consensus 62 hl~~EildNsiDea~a--------------g~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------------CTTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------------CCCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 356899999999 432 1111368888887788999999999998541 112223333333
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceeeeeeeEEEEEEecCCCCCeEEEEEecCCc----eEEEeccCCCCCCCCC
Q 005150 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS----SYVIREETDPEKLLKR 253 (711)
Q Consensus 178 t~~f~~~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr~~~~~~~~~w~~~~~~~----~~i~~~~~~~~~~~~~ 253 (711)
.+ | . .+.-...-|.-|||.--+=.++.++.|.+.....+..|.-....+.. -.+... .....
T Consensus 128 gK-F----d----~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~-----~~~~t 193 (1177)
T 4gfh_A 128 SN-Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY-----KKGPS 193 (1177)
T ss_dssp SC-C----C----CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC-----CSSCC
T ss_pred cC-c----C----CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC-----CCCCC
Confidence 22 2 1 11223456999999866666778877777543334444333332221 112222 13468
Q ss_pred CeEEEEEecCC---CccCCCcHHHHHHHHHHh
Q 005150 254 GTQITLYLKED---DKYEFSEPTRIQGLVKNY 282 (711)
Q Consensus 254 GT~I~L~Lk~~---~~~e~~~~~~i~~li~~y 282 (711)
||+|+..-... .. + ++.+.+....++.
T Consensus 194 GT~V~F~PD~~iF~~~-~-~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 194 YTKVTFKPDLTRFGMK-E-LDNDILGVMRRRV 223 (1177)
T ss_dssp CEEEEEEECHHHHTCS-S-CCHHHHHHHHHHH
T ss_pred ceEEEEEeCHHhcCCc-E-eCHHHHHHHHHHH
Confidence 99998774221 11 3 3445555555543
No 55
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.90 E-value=0.00049 Score=68.19 Aligned_cols=51 Identities=35% Similarity=0.486 Sum_probs=37.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 126 ~il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if 176 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLG 176 (244)
T ss_dssp HHHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 467899999999841 123455665556556789999999999999876533
No 56
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.41 E-value=0.0022 Score=58.73 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.6
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
++.+||.||..+.. ..+.+.|.+..+.+.-.|+|+|||.||+.+++...+
T Consensus 51 il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f 100 (152)
T 3a0y_A 51 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIF 100 (152)
T ss_dssp HHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGG
T ss_pred HHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHh
Confidence 55689999999952 123445555555555679999999999999876433
No 57
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.40 E-value=0.0021 Score=64.80 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=35.1
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEe--cCCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++..||+||+++... +.....|.|.. ..+.-.|+|.|||+||+.+++...|
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 194 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIF 194 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhc
Confidence 3667899999998421 11123455443 4445679999999999999876544
No 58
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.36 E-value=0.003 Score=68.44 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=34.5
Q ss_pred hHHHhhhhHhhHHH----HhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 005150 107 FLRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (711)
Q Consensus 107 flRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~ 167 (711)
.+.+||.||+|+.- .|+.. .. ...+.+.|.+..+.+.-.|+|.|||.||+.+.+.
T Consensus 110 ~l~nLl~NAi~h~~e~~~~r~~~--gk----~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 110 PLLHLLRNAIDHGIEPKEERIAK--GK----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHT--TC----CSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHhc--CC----CCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 37899999999951 11100 00 0123334444444445679999999999999874
No 59
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.21 E-value=0.0031 Score=56.91 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=33.6
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel 166 (711)
..+.||++||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 43 ~il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 43 MCLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 36789999999883 12345555555555668999999999987654
No 60
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.73 E-value=0.0077 Score=58.73 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=31.1
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel 166 (711)
++.||+.||..+. ..+.+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 6889999999883 12345555555555678999999999998865
No 61
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.69 E-value=0.0058 Score=54.29 Aligned_cols=44 Identities=30% Similarity=0.491 Sum_probs=33.0
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee 165 (711)
.++.||+.||..+. ....+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHA---------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCT---------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhC---------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 36889999998873 12345666655656 7899999999999876
No 62
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.56 E-value=0.0052 Score=54.92 Aligned_cols=44 Identities=41% Similarity=0.518 Sum_probs=33.4
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~ee 165 (711)
.++.|||.||..+. ..+.+.|.+..+.+ -.|+|.|||.||+.++
T Consensus 46 ~il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 46 AVVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 46889999999983 12445666666666 7899999999998654
No 63
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=95.52 E-value=0.0096 Score=57.04 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.8
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~ 167 (711)
++.+||.||+.+........+... ....+.+.|.+..+.+.-.|+|+|||.||+.+++.
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~--~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKG--KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHT--SCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccc--CCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 478999999999411000000000 01123344444445555679999999999999874
No 64
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=95.12 E-value=0.0096 Score=54.73 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC----------CcEEEEEeCCCCCCHHHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE----------NGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~L~I~DnGiGMt~eel~~~l 170 (711)
.++.+||.||..+... ..+.+.|.+..+.. .-.|+|.|||.||+.+++...+
T Consensus 51 ~il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 51 QVLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp HHHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------
T ss_pred HHHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhh
Confidence 3567899999999631 02334444443333 4568999999999999886544
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.40 E-value=0.024 Score=58.94 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=36.2
Q ss_pred hhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH
Q 005150 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (711)
Q Consensus 106 iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~eel~~ 168 (711)
.++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||+||+.+++..
T Consensus 247 ~vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 247 QVLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 368899999999841 2345566665555567799999999999987754
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=89.22 E-value=0.35 Score=48.57 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=30.8
Q ss_pred hHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCC--CCHHHH
Q 005150 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG--MTKEEL 166 (711)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiG--Mt~eel 166 (711)
++.-|++||.+|.. ..+.+.|.+..+.+...|+|+|+|.| +..+.+
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH
Confidence 45678888888841 23445666666666678999999977 554433
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=77.87 E-value=1.8 Score=46.84 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=43.0
Q ss_pred hhhHHHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005150 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (711)
Q Consensus 105 ~iflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~eel~~~l~tIa~Sgt~~f~~ 183 (711)
..++.||+.||+...- + ....+.+.|++..+.+ .-.|+|+|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~---------~--~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY---------A--TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBC---------C--SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhcc---------c--CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 4689999999999831 0 0113456666666543 4679999999999865 10
Q ss_pred HhhhcccCCCCCccccccccccceeeeeeeEEEEEEe
Q 005150 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (711)
Q Consensus 184 ~~~~~~~~~~d~~~IGqFGIGf~S~F~vad~v~V~Sr 220 (711)
. +.-|.|++-+-.+++++.+.+.
T Consensus 351 --------~------~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 --------A------RGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp --------------------CHHHHHTTSSEEEEEEE
T ss_pred --------C------CCCCcHHHHHHHHHHheeeEEC
Confidence 0 2346777777777787776543
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=72.61 E-value=2.4 Score=41.38 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=34.8
Q ss_pred HHhhhhHhhHHHHhhhhhccCCCCCCCCCCceEEEEec--CCCcEEEEEeCCCCCCHHHHHHHH
Q 005150 109 RELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD--PENGTITITDTGIGMTKEELVDCL 170 (711)
Q Consensus 109 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~L~I~DnGiGMt~eel~~~l 170 (711)
-.|+.||.+|++... .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+...|
T Consensus 111 gnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 458999999986420 01 1224455665655 456789999999999998766544
No 69
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.77 E-value=1.4e+02 Score=24.88 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=39.5
Q ss_pred CHHHHHHhcccCCce-EEEEecCCHHHHhhChhHHHHhhCC--cEEEEcCCCchHHHHHHHhhc
Q 005150 526 SLDEYVENMGEKQNA-IYYLATDSLKSAKSAPFLEKLVQKD--IEVLYLIEPIDEVAIQNLQTF 586 (711)
Q Consensus 526 sL~eY~~rmke~Qk~-IYY~~~~s~~~~~~sP~lE~~~~kG--~eVL~l~dpiDe~~l~~L~~~ 586 (711)
.+.+.+..||++-|. +.|+.|.|-.++.. |-..+++.| |+||--+|| |.+-|.+++|
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvne--fqneakkegvsydvlkstdp--eeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNE--FQNEAKKEGVSYDVLKSTDP--EELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHH--HHHHHHHHTCEEEEEECCCH--HHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHH--HHHHHHhcCcchhhhccCCH--HHHHHHHHHH
Confidence 467788899988775 66888888655544 334455544 788888887 5566677665
Done!