BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005151
(711 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKS 63
K++EK+ +++R + L NR+C +C+ G YV +FVCT+CSG R HRVKS
Sbjct: 7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKS 66
Query: 64 VSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
+SM FT QE++ LQ+ GN+ K++ L +D + + PD + ++++ F++ Y +R+
Sbjct: 67 ISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 13 RIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFT 70
+++R + L NR+C +C+ G YV +FVCT+CSG R HRVKS+SM FT
Sbjct: 9 KMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFT 68
Query: 71 SQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
QE++ LQ+ GN+ K++ L +D + + PD + ++++ F++ Y +R+
Sbjct: 69 QQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 5 LKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF---THRV 61
+K+ ++ + ++ LL +DN+ C +C S G ++ N F+C C+GIHR RV
Sbjct: 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRV 67
Query: 62 KSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRR 121
KSV++ ++T ++++ +QE GN +A L + + P+ P + FI+ Y ++
Sbjct: 68 KSVNLDQWTQEQIQCMQEMGNGKANR-LYEAYLPETFRRPQIDPA--VEGFIRDKYEKKK 124
Query: 122 YTGERNYD 129
Y +R+ D
Sbjct: 125 YM-DRSLD 131
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF---THRVK 62
K +E+++ I+ LL+ +DN+ C +C + G ++ N F+C C+GIHR RVK
Sbjct: 11 KLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 70
Query: 63 SVSMAKFTSQEVKALQEGGNQRAK 86
SV++ ++T+++++ +Q+ GN +A+
Sbjct: 71 SVNLDQWTAEQIQCMQDMGNTKAR 94
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 21/123 (17%)
Query: 3 NRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF---TH 59
NRLK+++ + N +C +C +V N F+C NCSG+HR
Sbjct: 13 NRLKKED------------ESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHIS 60
Query: 60 RVKSVSMAKFTSQEVKALQEGGNQRAKEVL----LKEWDPQRQSFPDSSNVER--LRNFI 113
V+S+ M FT +++K + +GGN++ + L + ++ P+R+ +++ R LR+ +
Sbjct: 61 IVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKILRSIV 120
Query: 114 KHV 116
+V
Sbjct: 121 HNV 123
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 19 LKLQD-NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-THR--VKSVSMAKFTSQEV 74
+++QD N C C + Q+V + ++C CSG HR H V+SV+M K+ E+
Sbjct: 31 VRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIEL 90
Query: 75 KALQEGGNQRAKEVL 89
+ ++ GGN + +E L
Sbjct: 91 EKMKAGGNAKFREFL 105
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 19 LKLQD-NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-THR--VKSVSMAKFTSQEV 74
+++QD N C C + Q+V + ++C CSG HR H V+SV+M K+ E+
Sbjct: 32 VRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIEL 91
Query: 75 KALQEGGNQRAKEVL--LKEWDP 95
+ ++ GGN + +E L +++DP
Sbjct: 92 EKMKAGGNAKFREFLESQEDYDP 114
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF---THRVKSVSMAKFTSQEVKALQE 79
+NR C +C S ++ +F F+C NCS HR+ V+S + KFT ++ +
Sbjct: 35 ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI 94
Query: 80 GGNQRA----KEVLLKEWDPQRQSFPDS 103
GGN RA K+VL + P+ + + S
Sbjct: 95 GGNGRARNYFKQVLGVNFSPKTKEYASS 122
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-TH--RVKSVS 65
E + II + ++ N C +C + ++ TN C CSGIHRE H R++S++
Sbjct: 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLT 61
Query: 66 MAKFTSQEVKALQEGGNQRAKEVL---LKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
+ + E+ + GN E++ L DP + + P S + R +++I Y++RRY
Sbjct: 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDMIAR-KDYITAKYMERRY 119
Query: 123 TGERNYDKPPRV 134
+++ D ++
Sbjct: 120 ARKKHADTAAKL 131
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF--THRVKSVSM 66
++ R + LL+ N RC +C + + F+C +CSGIHR +VKSV +
Sbjct: 21 KERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRL 80
Query: 67 AKFTSQEVKALQEGGNQRAK 86
+ +V+ + GN A+
Sbjct: 81 DAWEEAQVEFMASHGNDAAR 100
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 3 NRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF--THR 60
N + ++ R + LL+ N RC +C + + F+C +CSGIHR +
Sbjct: 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSK 72
Query: 61 VKSVSMAKFTSQEVKALQEGGNQRAK 86
VKSV + + +V+ + GN A+
Sbjct: 73 VKSVRLDAWEEAQVEFMASHGNDAAR 98
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80
N +C +C + ++ TN C CSG+HRE R++S+++ E+
Sbjct: 42 NSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 101
Query: 81 GNQRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRY 122
GN EV+ + P + S++ R++I YV+ R+
Sbjct: 102 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 144
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF---THRVKSVSMAKFTSQEVKALQEG 80
N +C +C + ++ TN C CSG+HRE R++S+++ E+
Sbjct: 23 NSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82
Query: 81 GNQRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRY 122
GN EV+ + P + S++ R++I YV+ R+
Sbjct: 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 125
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-TH--RVKSVSMAKFTSQEVKALQEG 80
N +C +C ++ N +C CSGIHR H +V+S+++ + + VK + E
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRY 122
GN ++ + ++ P S E+ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEK-EAWIHAKYVEKKF 147
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-TH--RVKSVSMAKFTSQEVKALQEG 80
N +C +C ++ N +C CSGIHR H +V+S+++ + + VK + E
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRY 122
GN ++ + ++ P S E+ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEK-EAWIHAKYVEKKF 147
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF-TH--RVKSVSMAKFTSQEVKALQEG 80
N +C +C ++ N +C CSGIHR H +V+S+++ + + VK + E
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRY 122
GN ++ + ++ P S E+ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEK-EAWIHAKYVEKKF 147
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 12 ERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTS 71
+ + + L + N+ C +C + + + F+C +CSG+HR + + + S
Sbjct: 25 QTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 84
Query: 72 Q----EVKALQEGGNQRA 85
+++ +Q GGN A
Sbjct: 85 NWNWFQLRCMQVGGNANA 102
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 14 IIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQ- 72
I + L + N+ C +C + + + F+C +CSG HR + + + S
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 73 ---EVKALQEGGNQRAKEVL 89
+++ +Q GGN A
Sbjct: 79 SWFQLRCMQVGGNASASSFF 98
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 359 ASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPA 411
AS P + V +S LN L+++FS + +P VP I + A ++A +
Sbjct: 87 ASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAAS 139
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 377 NTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGG 421
++LET F L A++P S GAG PV TN L GG
Sbjct: 132 SSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGG 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,100,970
Number of Sequences: 62578
Number of extensions: 870769
Number of successful extensions: 1194
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 81
length of query: 711
length of database: 14,973,337
effective HSP length: 106
effective length of query: 605
effective length of database: 8,340,069
effective search space: 5045741745
effective search space used: 5045741745
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)