Query 005151
Match_columns 711
No_of_seqs 200 out of 1190
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 8.5E-39 2.9E-43 301.7 10.7 124 2-125 3-128 (140)
2 2crr_A Stromal membrane-associ 100.0 1E-36 3.4E-41 287.9 7.7 121 4-127 9-132 (141)
3 2iqj_A Stromal membrane-associ 100.0 8.1E-37 2.8E-41 286.3 6.9 120 4-126 7-129 (134)
4 3jue_A Arfgap with coiled-coil 100.0 2.5E-33 8.4E-38 296.7 8.3 124 2-126 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 6.1E-32 2.1E-36 289.1 11.0 123 4-127 14-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 8.2E-31 2.8E-35 246.8 8.3 114 5-122 17-133 (138)
7 3dwd_A ADP-ribosylation factor 100.0 5.8E-30 2E-34 242.8 9.2 119 6-125 20-146 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.2E-30 7.4E-35 246.6 6.0 93 1-95 8-104 (149)
9 2b0o_E UPLC1; arfgap, structur 99.9 6.4E-28 2.2E-32 246.1 10.8 120 6-125 24-147 (301)
10 3lvq_E ARF-GAP with SH3 domain 99.9 5.8E-28 2E-32 260.9 8.2 122 6-127 5-130 (497)
11 2p57_A GTPase-activating prote 99.9 1.4E-27 4.8E-32 226.1 7.8 87 7-93 20-110 (144)
12 1dcq_A PYK2-associated protein 99.9 2.4E-27 8.1E-32 239.0 9.1 119 9-127 2-124 (278)
13 3sub_A ADP-ribosylation factor 99.9 4.8E-27 1.6E-31 225.9 8.3 87 7-93 4-94 (163)
14 3o47_A ADP-ribosylation factor 99.9 8.5E-26 2.9E-30 234.7 8.8 91 4-94 17-110 (329)
15 2cp8_A NEXT to BRCA1 gene 1 pr 83.6 0.046 1.6E-06 44.3 -3.9 29 177-205 12-40 (54)
16 1u5k_A Hypothetical protein; O 82.9 0.94 3.2E-05 45.0 4.3 55 15-82 137-195 (244)
17 2bwb_A Ubiquitin-like protein 77.5 0.12 4E-06 40.2 -3.4 29 177-205 10-38 (46)
18 2dah_A Ubiquilin-3; UBA domain 73.6 0.14 4.8E-06 41.1 -4.0 29 177-205 12-40 (54)
19 2dna_A Unnamed protein product 71.8 0.18 6.3E-06 42.4 -3.8 29 177-205 22-50 (67)
20 1wr1_B Ubiquitin-like protein 71.2 0.18 6E-06 41.2 -4.0 29 177-205 20-48 (58)
21 1vej_A Riken cDNA 4931431F19; 69.5 0.23 7.8E-06 42.5 -3.8 29 177-205 32-60 (74)
22 2cwb_A Chimera of immunoglobul 67.8 0.37 1.3E-05 43.9 -3.1 30 176-205 68-97 (108)
23 2knz_A Ubiquilin-4; cytoplasm, 67.3 0.33 1.1E-05 38.5 -3.1 29 177-205 14-42 (53)
24 2jy5_A Ubiquilin-1; UBA, alter 63.3 0.39 1.3E-05 38.0 -3.4 29 177-205 15-43 (52)
25 1gnf_A Transcription factor GA 49.4 6 0.00021 30.9 1.3 36 23-58 3-39 (46)
26 1tjl_A DNAK suppressor protein 48.3 5.8 0.0002 37.7 1.3 33 22-54 109-142 (151)
27 2kgo_A Uncharacterized protein 47.1 5.1 0.00017 36.5 0.7 31 24-54 56-87 (108)
28 2vut_I AREA, nitrogen regulato 46.1 6.5 0.00022 30.3 1.0 33 25-57 2-35 (43)
29 4gat_A Nitrogen regulatory pro 44.0 8.1 0.00028 32.3 1.4 37 22-58 7-44 (66)
30 3dfx_A Trans-acting T-cell-spe 37.3 9.8 0.00033 31.6 0.8 37 22-58 5-42 (63)
31 2zet_C Melanophilin; complex, 36.3 13 0.00044 35.5 1.6 34 23-56 67-105 (153)
32 4hc9_A Trans-acting T-cell-spe 35.9 13 0.00044 34.0 1.5 33 24-56 5-38 (115)
33 1d4u_A Nucleotide excision rep 34.2 7.7 0.00026 35.5 -0.3 32 23-54 4-36 (111)
34 1ffk_W Ribosomal protein L37AE 33.1 18 0.00063 30.8 1.9 40 11-52 13-53 (73)
35 4glq_A Methyl-accepting chemot 30.3 14 0.00047 34.5 0.7 27 68-94 132-158 (171)
36 1zbd_B Rabphilin-3A; G protein 26.6 21 0.00071 33.3 1.2 49 6-54 31-90 (134)
37 3g9m_A Glucocorticoid receptor 25.8 18 0.00061 31.5 0.6 31 23-56 1-31 (90)
38 3dzy_D Peroxisome proliferator 22.9 28 0.00097 37.5 1.6 31 23-56 49-79 (419)
39 2kae_A GATA-type transcription 22.7 23 0.0008 30.0 0.7 34 23-57 7-43 (71)
40 2nll_B Protein (thyroid hormon 21.8 28 0.00095 31.1 1.0 29 25-56 2-30 (103)
41 1hcq_A Protein (estrogen recep 21.0 28 0.00096 30.0 0.9 31 23-56 3-33 (84)
42 2han_B Ecdysone receptor; tran 20.4 26 0.00089 32.1 0.5 31 23-56 7-37 (119)
43 2ebl_A COUP transcription fact 20.3 33 0.0011 29.9 1.2 32 22-56 5-36 (89)
44 1dl6_A Transcription factor II 20.3 34 0.0012 27.5 1.2 29 25-54 12-40 (58)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=8.5e-39 Score=301.67 Aligned_cols=124 Identities=35% Similarity=0.689 Sum_probs=116.4
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC--cceeecccccCCHHHHHHHHh
Q 005151 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE 79 (711)
Q Consensus 2 ~sr~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG--HrVKSLsLD~Wt~eEVe~m~~ 79 (711)
.++.+++|+++++|+.|++.|+|++|+|||+.+|+|||+|||||||++|+||||.|| |+||||+||+|++++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence 356689999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred cChHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhcccccC
Q 005151 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (711)
Q Consensus 80 gGN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF~~e 125 (711)
+||.++|++||+++++...+.|+.++.+.+++||++||++|+|+.+
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 9999999999999987667788877777889999999999999865
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=287.89 Aligned_cols=121 Identities=27% Similarity=0.594 Sum_probs=109.5
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHHhc
Q 005151 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (711)
Q Consensus 4 r~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~~g 80 (711)
..+++|+++++|++|++.++|++|||||+.+|+|||+|||||||++|+||||.|| ++||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhcccccCCC
Q 005151 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERN 127 (711)
Q Consensus 81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF~~e~~ 127 (711)
||.++|+|||++++.. ...|.. + +.+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~-~-~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT-D-QAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS-H-HHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc-h-HHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 344543 2 467899999999999997643
No 3
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=286.34 Aligned_cols=120 Identities=28% Similarity=0.564 Sum_probs=104.5
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHHhc
Q 005151 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (711)
Q Consensus 4 r~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~~g 80 (711)
..++.|+++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| ++||||+||+|++++|++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhcccccCC
Q 005151 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (711)
Q Consensus 81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF~~e~ 126 (711)
||.++|+|||++++.. ...|.. .+.+++|||+||++|+|+.+.
T Consensus 87 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 87 GNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred chHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCCc
Confidence 9999999999998764 344543 246789999999999998654
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=2.5e-33 Score=296.66 Aligned_cols=124 Identities=20% Similarity=0.430 Sum_probs=105.3
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHH
Q 005151 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQ 78 (711)
Q Consensus 2 ~sr~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~ 78 (711)
++|.|++|+++++|+.|++.++|++||||++++|+|||+|||||||++|+||||.|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 567799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcChHHHHHHHhhcCCCC--CCCCCCCchHHHHHHHHHHHhhhcccccCC
Q 005151 79 EGGNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (711)
Q Consensus 79 ~gGN~~aN~i~Ea~~~~~--~~p~Pdssd~~~lreFIr~KYveKrF~~e~ 126 (711)
.+||.++|+|||++|+.. .++.|.+.. +.+++||++||++|+|+.+.
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~-~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSR-QEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCH-HHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCH-HHHHHHHHHHHHhhcccccc
Confidence 999999999999999863 455555443 55688999999999998754
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=6.1e-32 Score=289.09 Aligned_cols=123 Identities=22% Similarity=0.414 Sum_probs=110.1
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCCc--ceeecccccCCHHHHHHHHhcC
Q 005151 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTH--RVKSVSMAKFTSQEVKALQEGG 81 (711)
Q Consensus 4 r~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LGH--rVKSLsLD~Wt~eEVe~m~~gG 81 (711)
..+++++++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+|.| +||||+||+|++++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCch-HHHHHHHHHHHhhhcccccCCC
Q 005151 82 NQRAKEVLLKEWDPQRQSFPDSSN-VERLRNFIKHVYVDRRYTGERN 127 (711)
Q Consensus 82 N~~aN~i~Ea~~~~~~~p~Pdssd-~~~lreFIr~KYveKrF~~e~~ 127 (711)
|.++|+|||++++.. ...|..++ ...+++|||+||++|+|+.+..
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999765 33444333 3446779999999999997653
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=8.2e-31 Score=246.82 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=99.1
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcC
Q 005151 5 LKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGG 81 (711)
Q Consensus 5 ~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~Wt~eEVe~m~~gG 81 (711)
+..++..+++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.|| | +||||+||+|++++|++|+.+|
T Consensus 17 ~~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~G 96 (138)
T 2owa_A 17 FVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGG 96 (138)
T ss_dssp CBCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhc
Confidence 345566778888899999999999999999999999999999999999999998 5 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhccc
Q 005151 82 NQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122 (711)
Q Consensus 82 N~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF 122 (711)
|.++|+|||++... .|+....++.+.||..||++|.-
T Consensus 97 N~~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 97 NGRARNYFKQVLGV----NFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHHH
Confidence 99999999986432 13333445667799999998753
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=5.8e-30 Score=242.77 Aligned_cols=119 Identities=24% Similarity=0.510 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCh
Q 005151 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (711)
Q Consensus 6 keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~Wt~eEVe~m~~gGN 82 (711)
..+++++++|+.|++.|+|++|+||++++|+|||+|||||||++|+||||.|| | +||||+||+|+++||++|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCC-----CCchHHHHHHHHHHHhhhcccccC
Q 005151 83 QRAKEVLLKEWDPQRQSFP-----DSSNVERLRNFIKHVYVDRRYTGE 125 (711)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~P-----dssd~~~lreFIr~KYveKrF~~e 125 (711)
.++|+|||++.... ...+ .+.-....|+.|+++++.|.|..+
T Consensus 100 ~~an~~~ea~~~~~-~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~ 146 (147)
T 3dwd_A 100 AKFREFLESQEDYD-PCWSLQEKYNSRAAALFRDKVVALAEGREWSLE 146 (147)
T ss_dssp HHHHHHHHTSTTCC-TTCCHHHHHTSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCC-CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 99999999863211 0000 122234467788888888888654
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=246.65 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=85.6
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeeccccc-CCHHHHHH
Q 005151 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAK-FTSQEVKA 76 (711)
Q Consensus 1 m~sr~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~-Wt~eEVe~ 76 (711)
|++..+ ++++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.|| | +||||+||. |++++|++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred cccCCH--HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHH
Confidence 555433 56789999999999999999999999999999999999999999999998 4 999999995 99999999
Q ss_pred HHhcChHHHHHHHhhcCCC
Q 005151 77 LQEGGNQRAKEVLLKEWDP 95 (711)
Q Consensus 77 m~~gGN~~aN~i~Ea~~~~ 95 (711)
|+.+||.++|+|||+++..
T Consensus 86 m~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCC
T ss_pred HHHHhhHHHHHHHHhcCCC
Confidence 9999999999999998753
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=246.07 Aligned_cols=120 Identities=23% Similarity=0.469 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCh
Q 005151 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (711)
Q Consensus 6 keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~Wt~eEVe~m~~gGN 82 (711)
..++..+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| | +|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 35677889999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CchHHHHHHHHHHHhhhcccccC
Q 005151 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGE 125 (711)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pd-ssd~~~lreFIr~KYveKrF~~e 125 (711)
.++|+|||+.++......|. .++...+++||+.||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999998765334443 34566778899999999999764
No 10
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=5.8e-28 Score=260.94 Aligned_cols=122 Identities=22% Similarity=0.455 Sum_probs=107.4
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHHhcCh
Q 005151 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (711)
Q Consensus 6 keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~~gGN 82 (711)
+.+|.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|+||||.|| +|||||+||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred hhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CchHHHHHHHHHHHhhhcccccCCC
Q 005151 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGERN 127 (711)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pd-ssd~~~lreFIr~KYveKrF~~e~~ 127 (711)
..+|++||+.++....+.|. .++...+++||++||++++|..+..
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence 99999999999765444554 3445567889999999999987543
No 11
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=226.10 Aligned_cols=87 Identities=20% Similarity=0.528 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeeccccc-CCHHHHHHHHhcCh
Q 005151 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK-FTSQEVKALQEGGN 82 (711)
Q Consensus 7 eder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~-Wt~eEVe~m~~gGN 82 (711)
..++.+++|+.|++.|+|++|+|||+.+|+|+|+|||||||++|+||||.|| ++||||+||. |++++|++|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 4456788999999999999999999999999999999999999999999998 4999999996 99999999999999
Q ss_pred HHHHHHHhhcC
Q 005151 83 QRAKEVLLKEW 93 (711)
Q Consensus 83 ~~aN~i~Ea~~ 93 (711)
.++|+|||++.
T Consensus 100 ~~an~~~e~~g 110 (144)
T 2p57_A 100 ANATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999874
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=2.4e-27 Score=238.96 Aligned_cols=119 Identities=24% Similarity=0.506 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHHhcChHHH
Q 005151 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRA 85 (711)
Q Consensus 9 er~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~~gGN~~a 85 (711)
|+++++|+.|++.|+|+.|+|||+.+|+|+|+|||+|||++|+||||.|| ++|||++||.|+.+++.+|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCC-CchHHHHHHHHHHHhhhcccccCCC
Q 005151 86 KEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGERN 127 (711)
Q Consensus 86 N~i~Ea~~~~~~~p~Pd-ssd~~~lreFIr~KYveKrF~~e~~ 127 (711)
|+|||+.++......|. .++...+++||+.||+.++|..+..
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 99999988765333343 2345667889999999999987643
No 13
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=4.8e-27 Score=225.87 Aligned_cols=87 Identities=31% Similarity=0.608 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHcC-CCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCh
Q 005151 7 EDEKNERIIRGLLKL-QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (711)
Q Consensus 7 eder~ekiLr~Llk~-PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~Wt~eEVe~m~~gGN 82 (711)
++...+++|++|++. ++|++|+|||+++|+|||+|||||||++|+||||.|| | +||||+||+|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999995 8999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005151 83 QRAKEVLLKEW 93 (711)
Q Consensus 83 ~~aN~i~Ea~~ 93 (711)
.++|++||++.
T Consensus 84 ~~an~~~e~~g 94 (163)
T 3sub_A 84 KKCQTYLENYG 94 (163)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=8.5e-26 Score=234.73 Aligned_cols=91 Identities=26% Similarity=0.592 Sum_probs=82.3
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC-c--ceeecccccCCHHHHHHHHhc
Q 005151 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEG 80 (711)
Q Consensus 4 r~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG-H--rVKSLsLD~Wt~eEVe~m~~g 80 (711)
+...+++++++|+.|++.++|+.|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|++++|++|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~ 96 (329)
T 3o47_A 17 QGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAG 96 (329)
T ss_dssp ------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999999998 3 899999999999999999999
Q ss_pred ChHHHHHHHhhcCC
Q 005151 81 GNQRAKEVLLKEWD 94 (711)
Q Consensus 81 GN~~aN~i~Ea~~~ 94 (711)
||.++|++||+...
T Consensus 97 gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 97 GNAKFREFLESQED 110 (329)
T ss_dssp CHHHHHHHHHTCSS
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999998754
No 15
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.62 E-value=0.046 Score=44.32 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=27.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
++.+|.+|||.|++.|..+|++.+||+++
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gnv~~ 40 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQ 40 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 46789999999999999999999999999
No 16
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=82.89 E-value=0.94 Score=45.02 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=40.7
Q ss_pred HHHHHcC----CCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCCcceeecccccCCHHHHHHHHhcCh
Q 005151 15 IRGLLKL----QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGN 82 (711)
Q Consensus 15 Lr~Llk~----PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LGHrVKSLsLD~Wt~eEVe~m~~gGN 82 (711)
..+|++. |.-..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-.
T Consensus 137 el~lL~~~G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 137 SYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp HHHHHTTSSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 3456664 344699999998777889999999999996432 477888888875433
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=77.51 E-value=0.12 Score=40.18 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=26.3
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+..+|.+|||.|+..+..+|+..+||+++
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~~~gnv~~ 38 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRRSGGSVQG 38 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 45789999999998899999999999988
No 18
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.58 E-value=0.14 Score=41.06 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=26.9
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+..+|++|||.|+..+..+|...+||+++
T Consensus 12 ~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~ 40 (54)
T 2dah_A 12 QLEQLRSMGFLNREANLQALIATGGDVDA 40 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 46889999999998899999999999998
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.82 E-value=0.18 Score=42.39 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=27.5
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+..+|++|||.|++.|..+|+..+||+++
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~Gnve~ 50 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDGDTNA 50 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 67899999999999999999999999999
No 20
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=71.19 E-value=0.18 Score=41.16 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+..+|++|||.|++.+..+|+..+||+++
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~gnve~ 48 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGGSVQG 48 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 56889999999999999999999999988
No 21
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.48 E-value=0.23 Score=42.48 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=27.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+..+|++|||.|++.+..+|+..+||+++
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~Gnve~ 60 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDGDIHA 60 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 57899999999999999999999999999
No 22
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=67.76 E-value=0.37 Score=43.92 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=27.7
Q ss_pred CCccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 176 RSDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 176 R~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
.+.++|++|||.|++.+..+|...+||+.+
T Consensus 68 ~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~ 97 (108)
T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGDIQA 97 (108)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 367899999999999999999999999998
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=67.34 E-value=0.33 Score=38.52 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+.++|.+|||.|++.+..+|+..+||+.+
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~gnve~ 42 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGGDINA 42 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 45789999998888999999999999988
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=63.35 E-value=0.39 Score=38.02 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=26.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005151 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (711)
Q Consensus 177 ~~dkl~rmgy~d~~~~~d~l~~~~Gd~~r 205 (711)
+.++|.+|||.|+..+..+|+..+||+.+
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~gn~e~ 43 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGGDINA 43 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 46889999998888999999999999887
No 25
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=49.38 E-value=6 Score=30.91 Aligned_cols=36 Identities=19% Similarity=0.525 Sum_probs=29.8
Q ss_pred CCCCCcCCCCC-CCCeeEccchhhhhhhhhhhhccCC
Q 005151 23 DNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (711)
Q Consensus 23 gNk~CADCGs~-~P~WaSiNfGVFVCi~CSGIHR~LG 58 (711)
+.+.|.+|+.. -|.|=.-..|..||-.|.-.++..+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56799999986 5899988889999999987666544
No 26
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=48.28 E-value=5.8 Score=37.75 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCCCCcCCCCCCCC-eeEccchhhhhhhhhhhh
Q 005151 22 QDNRRCINCNSLGTQ-YVCTNFWTFVCTNCSGIH 54 (711)
Q Consensus 22 PgNk~CADCGs~~P~-WaSiNfGVFVCi~CSGIH 54 (711)
..-.+|.+||.+=|. -.-.--++-.|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 445799999996321 222233677999999876
No 27
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=47.14 E-value=5.1 Score=36.50 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCC-CeeEccchhhhhhhhhhhh
Q 005151 24 NRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (711)
Q Consensus 24 Nk~CADCGs~~P-~WaSiNfGVFVCi~CSGIH 54 (711)
-.+|.+||.+=| .-.-..-++..|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 469999999632 2222344677999999864
No 28
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=46.15 E-value=6.5 Score=30.29 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCCcCCCCC-CCCeeEccchhhhhhhhhhhhccC
Q 005151 25 RRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREF 57 (711)
Q Consensus 25 k~CADCGs~-~P~WaSiNfGVFVCi~CSGIHR~L 57 (711)
+.|.+|+.. -|.|=.-..|..||-.|.-..|..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 579999986 489999888999999998765543
No 29
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=43.99 E-value=8.1 Score=32.29 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCCCCCcCCCCC-CCCeeEccchhhhhhhhhhhhccCC
Q 005151 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (711)
Q Consensus 22 PgNk~CADCGs~-~P~WaSiNfGVFVCi~CSGIHR~LG 58 (711)
.+...|++|+.. -|.|-.-.-|..||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 345799999986 5999998889999999987665544
No 30
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=37.30 E-value=9.8 Score=31.58 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCCCCCcCCCCC-CCCeeEccchhhhhhhhhhhhccCC
Q 005151 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (711)
Q Consensus 22 PgNk~CADCGs~-~P~WaSiNfGVFVCi~CSGIHR~LG 58 (711)
.....|.+|+.. -|.|=.-..|-.||-.|.-..+..+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 456799999986 5899988889999999987666544
No 31
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.33 E-value=13 Score=35.50 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=28.0
Q ss_pred CCCCCcCCCCC-----CCCeeEccchhhhhhhhhhhhcc
Q 005151 23 DNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 23 gNk~CADCGs~-----~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
+...|+-|+.. +..-.|.+-...||.+|...++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 45799999986 67777888889999999977764
No 32
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=35.91 E-value=13 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.595 Sum_probs=27.1
Q ss_pred CCCCcCCCCC-CCCeeEccchhhhhhhhhhhhcc
Q 005151 24 NRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 24 Nk~CADCGs~-~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
-+.|++|++. -|.|=.-.-|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 3689999986 59999888899999999866543
No 33
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=34.18 E-value=7.7 Score=35.46 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCC-CeeEccchhhhhhhhhhhh
Q 005151 23 DNRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (711)
Q Consensus 23 gNk~CADCGs~~P-~WaSiNfGVFVCi~CSGIH 54 (711)
+..+|.+||...- .|..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 4568999998633 3345699999999998753
No 34
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=33.14 E-value=18 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHHHH-HcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhh
Q 005151 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (711)
Q Consensus 11 ~ekiLr~L-lk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSG 52 (711)
.++.++++ +.......|.-||.....+.. .||+.|..|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45666666 557778899999987776665 59999999964
No 35
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=30.32 E-value=14 Score=34.46 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHhcChHHHHHHHhhcCC
Q 005151 68 KFTSQEVKALQEGGNQRAKEVLLKEWD 94 (711)
Q Consensus 68 ~Wt~eEVe~m~~gGN~~aN~i~Ea~~~ 94 (711)
.|+++||++|+.+++..+-.|-.+++-
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999888777654
No 36
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.55 E-value=21 Score=33.31 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHcC------CCCCCCcCCCCC-----CCCeeEccchhhhhhhhhhhh
Q 005151 6 KEDEKNERIIRGLLKL------QDNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIH 54 (711)
Q Consensus 6 keder~ekiLr~Llk~------PgNk~CADCGs~-----~P~WaSiNfGVFVCi~CSGIH 54 (711)
+|+++..++...|.+. .+...|+-|+.. +..-.|.+-...||.+|.+.+
T Consensus 31 ~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 31 MEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4555544444444321 355799999985 344567777788888888776
No 37
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=25.84 E-value=18 Score=31.45 Aligned_cols=31 Identities=13% Similarity=0.533 Sum_probs=24.8
Q ss_pred CCCCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 23 gNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
|+..|.=|+...- ...||++.|..|++..|.
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997653 458999999999998764
No 38
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=22.89 E-value=28 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.527 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 23 gNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
.+..|.=||...-. ..|||+.|..|++..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 36689999987654 48999999999998765
No 39
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=22.72 E-value=23 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCCCCcCCCCC-CCCeeE--ccchhhhhhhhhhhhccC
Q 005151 23 DNRRCINCNSL-GTQYVC--TNFWTFVCTNCSGIHREF 57 (711)
Q Consensus 23 gNk~CADCGs~-~P~WaS--iNfGVFVCi~CSGIHR~L 57 (711)
....|.+|+.. -|.|=. -.-| .||-.|.-.++..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 34799999986 589987 5667 8999998766553
No 40
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=21.83 E-value=28 Score=31.12 Aligned_cols=29 Identities=24% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 25 k~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
..|.=||...- ...||++.|..|++..|.
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57899997653 458999999999998765
No 41
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=20.96 E-value=28 Score=30.00 Aligned_cols=31 Identities=19% Similarity=0.659 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 23 gNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
+...|.=|+...- ...||++.|..|++..|.
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4678999997653 569999999999998875
No 42
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=20.35 E-value=26 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.664 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 23 gNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
....|.=||...- ...||++.|..|++..|.
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 3578999997653 569999999999998875
No 43
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=20.34 E-value=33 Score=29.88 Aligned_cols=32 Identities=16% Similarity=0.614 Sum_probs=26.0
Q ss_pred CCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhcc
Q 005151 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (711)
Q Consensus 22 PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~ 56 (711)
+.+..|.-|+...- ...||++.|..|++..|.
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 34678999998654 458999999999998875
No 44
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.31 E-value=34 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=21.1
Q ss_pred CCCcCCCCCCCCeeEccchhhhhhhhhhhh
Q 005151 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIH 54 (711)
Q Consensus 25 k~CADCGs~~P~WaSiNfGVFVCi~CSGIH 54 (711)
..|-+|+.....+ ...-|..||..|--|-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999865322 3466899999997654
Done!