Your job contains 1 sequence.
>005152
MATTVAPAVEKASDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSER
SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN
GSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPV
APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGR
GSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRN
QNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLR
TNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKE
QNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWA
STPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK
WTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSK
TCILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDL
VEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005152
(711 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2092815 - symbol:ECT2 "evolutionarily conserve... 1673 3.8e-172 1
TAIR|locus:2159391 - symbol:ECT3 "AT5G61020" species:3702... 990 3.5e-105 3
TAIR|locus:2095938 - symbol:ECT1 "evolutionarily conserve... 867 1.0e-90 2
TAIR|locus:2089280 - symbol:ECT5 "AT3G13060" species:3702... 772 2.4e-89 2
TAIR|locus:2023807 - symbol:ECT7 "AT1G48110" species:3702... 687 4.3e-74 3
TAIR|locus:2088995 - symbol:ECT6 "AT3G17330" species:3702... 701 6.0e-72 2
TAIR|locus:2207405 - symbol:ECT8 "AT1G79270" species:3702... 682 1.6e-71 2
TAIR|locus:2161213 - symbol:ECT10 "evolutionarily conserv... 648 5.3e-69 2
TAIR|locus:2010494 - symbol:ECT9 "AT1G27960" species:3702... 634 6.8e-65 2
TAIR|locus:2024286 - symbol:ECT11 "AT1G09810" species:370... 635 3.8e-62 1
MGI|MGI:1917431 - symbol:Ythdf1 "YTH domain family 1" spe... 518 4.2e-53 2
UNIPROTKB|Q9Y5A9 - symbol:YTHDF2 "YTH domain family prote... 512 1.6e-51 2
MGI|MGI:1918850 - symbol:Ythdf3 "YTH domain family 3" spe... 507 4.2e-51 2
ZFIN|ZDB-GENE-040426-2786 - symbol:ythdf1 "YTH domain fam... 502 8.7e-51 2
UNIPROTKB|Q7Z739 - symbol:YTHDF3 "YTH domain family prote... 507 1.4e-48 1
CGD|CAL0002569 - symbol:orf19.1939 species:5476 "Candida ... 343 1.3e-30 1
UNIPROTKB|Q5A1Q7 - symbol:CaO19.1939 "Putative uncharacte... 343 1.3e-30 1
SGD|S000002782 - symbol:YDR374C "Putative protein of unkn... 295 2.4e-25 1
UNIPROTKB|F1NS70 - symbol:YTHDC2 "Uncharacterized protein... 200 4.9e-12 1
UNIPROTKB|Q96MU7 - symbol:YTHDC1 "YTH domain-containing p... 196 5.7e-12 1
RGD|621706 - symbol:Ythdc1 "YTH domain containing 1" spec... 193 1.2e-11 1
TAIR|locus:2118046 - symbol:AT4G11970 "AT4G11970" species... 187 2.2e-11 1
ZFIN|ZDB-GENE-041114-114 - symbol:ythdc1 "YTH domain cont... 187 4.9e-11 1
FB|FBgn0027616 - symbol:YT521-B "YT521-B" species:7227 "D... 185 8.9e-11 1
UNIPROTKB|E2QZR7 - symbol:YTHDC2 "Uncharacterized protein... 185 2.1e-10 1
UNIPROTKB|F1MNU7 - symbol:YTHDC2 "Uncharacterized protein... 185 2.2e-10 1
UNIPROTKB|Q9H6S0 - symbol:YTHDC2 "Probable ATP-dependent ... 180 7.8e-10 1
UNIPROTKB|F1RLG0 - symbol:YTHDC2 "Uncharacterized protein... 185 2.7e-09 2
MGI|MGI:2448561 - symbol:Ythdc2 "YTH domain containing 2"... 185 3.7e-09 2
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 153 2.2e-07 1
>TAIR|locus:2092815 [details] [associations]
symbol:ECT2 "evolutionarily conserved C-terminal region
2" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 EMBL:AP000603
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:AY123992
IPI:IPI00538679 RefSeq:NP_187955.2 UniGene:At.23650
UniGene:At.67751 ProteinModelPortal:Q9LJE5 SMR:Q9LJE5 STRING:Q9LJE5
PRIDE:Q9LJE5 ProMEX:Q9LJE5 EnsemblPlants:AT3G13460.1 GeneID:820548
KEGG:ath:AT3G13460 TAIR:At3g13460 InParanoid:Q9LJE5 OMA:DSRTNGR
PhylomeDB:Q9LJE5 ProtClustDB:CLSN2690909 Genevestigator:Q9LJE5
Uniprot:Q9LJE5
Length = 667
Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
Identities = 356/691 (51%), Positives = 422/691 (61%)
Query: 4 TVAPAVEKAXXXXXXXXXXXXXXXXEISEHTKKPSANQYGSVDSVNAAANGQIPS-ERSG 62
TVAP ++A EI E KK + QYG VD +GQ+PS +RS
Sbjct: 3 TVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVD-----VHGQVPSYDRSL 57
Query: 63 TPFL-NDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 121
TP L +D DP++CYVPN Y + YY Y G+ EW DY Y + +GVDM SG+YG+NG
Sbjct: 58 TPMLPSDAADPSVCYVPNPY-NPYQYYNVY-GSGQEWTDYPAYTNPEGVDMNSGIYGENG 115
Query: 122 SLMXXXXXXXXXXXXXXXXXXXXXXMGTDGQLYGPQHYQYPHYFQXXXXXXXXXXXXXXX 181
+++ +G +GQLYG Q YQYP+YF
Sbjct: 116 TVVYPQGYGYAAYPYSPATSPAPQ-LGGEGQLYGAQQYQYPNYFPNSGPYASSVATPTQP 174
Query: 182 XXXGDIPTSVAADQKPLPVESTNGKSXXXXXXXXXXXXXXSAPFKPTYQP-FN-SNNTYG 239
+ P V K LP +S N S SAP KPT Q N S+N YG
Sbjct: 175 DLSANKPAGV----KTLPADSNNVASAAGITKGSNG----SAPVKPTNQATLNTSSNLYG 226
Query: 240 RGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA-RPVAXXXXXXXXXXXXXXXXX 298
G+ PG G A+GYQDPR +G +P+PW DG SD RPV+
Sbjct: 227 MGA-PGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVPSS 285
Query: 299 XXXXYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYD 358
YR NSHY +H P ++G G AQG+ N RMY NKLYGQYG+T RS +G+GS+GYD
Sbjct: 286 RNQNYRSNSHYTSVHQPSSVTGYGTAQGYYN--RMYQNKLYGQYGSTGRSALGYGSSGYD 343
Query: 359 LRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPV 418
RTNGRGW + D KY+S N+DGLNELNRGPRAKG KNQKG+ ++L V
Sbjct: 344 SRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEV 403
Query: 419 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 478
KEQ +N T E D + PDR++YNK DFP +Y +A FF+IKSYSEDDVHKSIKY+V
Sbjct: 404 KEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNV 463
Query: 479 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 538
WASTPNGNKKL AAYQEAQQK+ CP+FL FSVN SGQFVGLAEM GPVDFN NVEYWQQ
Sbjct: 464 WASTPNGNKKLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQQ 523
Query: 539 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
DKWTG FP+KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGLK++KIFK+H
Sbjct: 524 DKWTGSFPLKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLKIVKIFKEHS 583
Query: 599 SKTCILDDFGFYETRQKTIXXXXXXXXXXXXXVWEGKPAEEKKELANGELKTQKSSEVAS 658
SKTCILDDF FYE RQKTI V E K +EKKE A E K S A
Sbjct: 584 SKTCILDDFSFYEVRQKTILEKKAKQTQKQ--VSEEKVTDEKKESATAE-SASKESPAA- 639
Query: 659 DLVEERTTTVQSNGDLRLSENGSVAK--TGD 687
VQ++ D++++ENGSVAK TGD
Sbjct: 640 ---------VQTSSDVKVAENGSVAKPVTGD 661
>TAIR|locus:2159391 [details] [associations]
symbol:ECT3 "AT5G61020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=RCA] EMBL:CP002688
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 IPI:IPI00547508
RefSeq:NP_851236.1 UniGene:At.21835 UniGene:At.70904 PRIDE:F4K1Z0
EnsemblPlants:AT5G61020.1 GeneID:836223 KEGG:ath:AT5G61020
OMA:HASKTCI Uniprot:F4K1Z0
Length = 495
Score = 990 (353.6 bits), Expect = 3.5e-105, Sum P(3) = 3.5e-105
Identities = 199/315 (63%), Positives = 229/315 (72%)
Query: 304 RPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNG 363
+ N Y L +G G + G M+ +Y N YG G + +G G+GS GYD
Sbjct: 119 KTNLQYQYLTQQGRSAGNGQSYGGY-MDNIYSN--YGMCG-PYTNGYGYGSYGYDSWKYM 174
Query: 364 RGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNV 423
W +V+ YK EN++GLNE+NRGPRAKG +Q GS A+ +KEQ V
Sbjct: 175 PNWYAVNNTYKPRNGYHGYGK---ENIEGLNEMNRGPRAKGFNSQDGSKVMAVSLKEQRV 231
Query: 424 L-TNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWAST 482
T +ED +SL +D YNK DFPE YT+AKF+VIKSYSEDD+HKSIKYSVW+ST
Sbjct: 232 TETEKLSED----VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSST 286
Query: 483 PNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWT 542
PNGNKKLDA+Y EA+QKS CPVFLLFSVNTSGQFVGLAEM GPVDFNK VEYWQQDKW
Sbjct: 287 PNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWI 346
Query: 543 GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTC 602
GCFPVKWH VKD+PNS L+HITLENNENKPVTNSRDTQE+KLEQG+K+IKIFKDH SKTC
Sbjct: 347 GCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDHASKTC 406
Query: 603 ILDDFGFYETRQKTI 617
ILDDF FYE RQK I
Sbjct: 407 ILDDFEFYENRQKII 421
Score = 44 (20.5 bits), Expect = 3.5e-105, Sum P(3) = 3.5e-105
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 200 VESTN-GKSXXXXXXXXXXXXXXSAPFKPTYQP--FNSNNTYGRGSLP-GRGPASGYQDP 255
VE+T GK S K YQ +N+ +YG+G+ G P + YQ P
Sbjct: 49 VEATKIGKPSLLSKDGGVTKDKGSNLKKLGYQSAAYNAKGSYGKGAYAYGYYPPA-YQYP 107
Query: 256 RCNLDG 261
R G
Sbjct: 108 RHGYTG 113
Score = 41 (19.5 bits), Expect = 3.5e-105, Sum P(3) = 3.5e-105
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 99 DDYTRYVSQDGVDMTSGVYGDNGS 122
D T+ ++ D G YG NG+
Sbjct: 17 DPTTKALAPDSETKLQGAYGGNGN 40
>TAIR|locus:2095938 [details] [associations]
symbol:ECT1 "evolutionarily conserved C-terminal region
1" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019722 "calcium-mediated signaling" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] GO:GO:0005634 EMBL:CP002686 GO:GO:0019722
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
HOGENOM:HOG000238171 EMBL:AY894117 EMBL:AK317103 IPI:IPI00657449
RefSeq:NP_001030629.1 UniGene:At.27388 SMR:Q3MK94 IntAct:Q3MK94
EnsemblPlants:AT3G03950.3 GeneID:819550 KEGG:ath:AT3G03950
TAIR:At3g03950 eggNOG:NOG299038 OMA:YYEAKEN ProtClustDB:CLSN2688051
Genevestigator:Q3MK94 Uniprot:Q3MK94
Length = 428
Score = 867 (310.3 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 175/319 (54%), Positives = 207/319 (64%)
Query: 303 YRPNSHYMGLHH---PRPMSGMGAAQGFMNMNRMYPNK-LYGQYGNTFRSGVGFGSNGYD 358
Y NS++ H P + + + +Y N LYG YGN SG +G+ GYD
Sbjct: 102 YDRNSNHSSFSHLMNPHSSQEVPSFDQLGYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYD 161
Query: 359 LRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPV 418
GRGW VDG Y+ E D LNEL RGPR+ KN +
Sbjct: 162 SWKLGRGWYPVDG-YRKTRSFNHGRGYSDEKADRLNELCRGPRSSDFKNPQ--------- 211
Query: 419 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 478
VL + + +S + D YN +FPE + AKFFVIKSYSEDDVH IKY
Sbjct: 212 ----VLNSSMLDAMKQDVS-AVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIKYGA 266
Query: 479 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 538
W+STP GNKKL+AAY EA++ S+ CPV+LLFSVN SGQFVGLAEM GPVDFNK +EYWQQ
Sbjct: 267 WSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYWQQ 326
Query: 539 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
DKW GCFPVKWHI+KD+PNSLL+HITL NNENKPVTNSRDTQE+ LE G K+IKIFK++
Sbjct: 327 DKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIFKEYM 386
Query: 599 SKTCILDDFGFYETRQKTI 617
SKTCILDD+ FYETRQK I
Sbjct: 387 SKTCILDDYKFYETRQKII 405
Score = 57 (25.1 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 190 SVAADQKPLPVESTNGKSXXXXXXXXXXXXXXSAPFKPTYQPFNSNN------TYGRGSL 243
S+ +D +P+ T G + +P N N +Y G +
Sbjct: 27 SLGSDANEVPMNFTKGSFQHPYGHAPYGASSHGSERRPNMNAGNLLNGGDSIGSYPWGYI 86
Query: 244 PGRGPASGYQDPRCNLD 260
P P+ GY DPR D
Sbjct: 87 PANYPSGGYPDPRFGYD 103
Score = 38 (18.4 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 76 YVPNGYPSTAFYYGGYDGN 94
Y GYP F GYD N
Sbjct: 90 YPSGGYPDPRF---GYDRN 105
>TAIR|locus:2089280 [details] [associations]
symbol:ECT5 "AT3G13060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR007275
Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347 EMBL:AK228498
IPI:IPI00526241 RefSeq:NP_187912.2 UniGene:At.39501
UniGene:At.47843 ProteinModelPortal:Q0WR25 SMR:Q0WR25 PaxDb:Q0WR25
PRIDE:Q0WR25 EnsemblPlants:AT3G13060.2 GeneID:820492
KEGG:ath:AT3G13060 TAIR:At3g13060 HOGENOM:HOG000238171
InParanoid:Q0WR25 OMA:HITKSFA PhylomeDB:Q0WR25
ProtClustDB:CLSN2690899 Genevestigator:Q0WR25 Uniprot:Q0WR25
Length = 634
Score = 772 (276.8 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 164/318 (51%), Positives = 208/318 (65%)
Query: 315 PRPMSGMGAAQGFMNMNRMYPNKLYGQYG---NTFRSGV------GFGSN-GYDLRTN-- 362
P+P+ G+ + M YG +G N++ G G GSN G L +N
Sbjct: 254 PQPLGSYGSYGQNIPMGSQRQRSFYG-FGSGSNSYNRGYMHSGGRGQGSNYGSRLISNVG 312
Query: 363 --GRGWLSVDG-KYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVK 419
+GW+ VD + + D LNE NRGPRA K Q V
Sbjct: 313 MGNQGWIGVDNSRGRGRVSDPSLGGAYNGTFDILNEQNRGPRASKPKTQ---------VL 363
Query: 420 EQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVW 479
E+ L + +N+K S + + +E N ADF +YT+AK F+IKSYSED+VHKSIKY+VW
Sbjct: 364 EE--LDSAADSKKNNKGS-AKEHEESNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVW 420
Query: 480 ASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQD 539
ASTPNGNKKLDAAY+EA+ + CP+FLLFSVN S QF G+AEM GPVDF K+V+YWQQD
Sbjct: 421 ASTPNGNKKLDAAYREAKDEKEPCPLFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQD 480
Query: 540 KWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 599
KW+G FPVKWHI+KDVPNS +HI LENN+NKPVTNSRDTQE+KLEQG++++KIFK++ +
Sbjct: 481 KWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVKLEQGIEMLKIFKNYDA 540
Query: 600 KTCILDDFGFYETRQKTI 617
T ILDDFGFYE R+K I
Sbjct: 541 DTSILDDFGFYEEREKII 558
Score = 139 (54.0 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 86 FYYGGYDGNVGEWDDYTRYVSQDGVDMTSGV-YGDNGSLMXXXXXXXXXXXXXXXXXXXX 144
FYY GY+ GEWD+Y+ YV+ +G+D+TS V + +N SL+
Sbjct: 82 FYYRGYENPTGEWDEYSSYVNVEGLDITSPVGFNENASLVYQTGYGYNPQMPYGPYSPAA 141
Query: 145 XXMGTDGQLYGPQHYQY----PHYFQ 166
+ ++GQLY PQ + + P+Y Q
Sbjct: 142 SPLPSEGQLYSPQQFPFSGASPYYQQ 167
>TAIR|locus:2023807 [details] [associations]
symbol:ECT7 "AT1G48110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48286 UniGene:At.70184 IPI:IPI01019307
RefSeq:NP_001117446.1 RefSeq:NP_175245.1 ProteinModelPortal:F4HWS5
SMR:F4HWS5 PRIDE:F4HWS5 EnsemblPlants:AT1G48110.1
EnsemblPlants:AT1G48110.2 GeneID:841229 KEGG:ath:AT1G48110
OMA:NYGYYCT Uniprot:F4HWS5
Length = 639
Score = 687 (246.9 bits), Expect = 4.3e-74, Sum P(3) = 4.3e-74
Identities = 134/231 (58%), Positives = 173/231 (74%)
Query: 391 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 450
D + E NRG R++ NQ L VK G A+ E + I ++P +YNK D
Sbjct: 266 DTVREQNRGRRSRALGNQ-------LIVKAYTTKA-GNADAEGN-IVINPS--QYNKEDL 314
Query: 451 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVF 506
+Y++AKFFVIKSYSEDDVHKSIKY+VW+ST +GNKKL +AY++AQ +KS CP+F
Sbjct: 315 RIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSCECPIF 374
Query: 507 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 566
L FSVN SG F G+AEM GPV F+K++++WQQDKW+G FPVKWHI+KDVPNS +HI L+
Sbjct: 375 LFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILQ 434
Query: 567 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 617
NNENKPVTNSRDTQEI L+QGL+++KIFKDH +T +LDDF +YE+RQ+ +
Sbjct: 435 NNENKPVTNSRDTQEIMLKQGLEVLKIFKDHMERTSLLDDFVYYESRQRVM 485
Score = 55 (24.4 bits), Expect = 4.3e-74, Sum P(3) = 4.3e-74
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 68 DFM-DPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDG--VDMTSG 115
DF+ D M Y + S +Y GY+ + G+W+++ + DG V T G
Sbjct: 9 DFVVDQGMYYPVDA--SYGYYCTGYE-SPGDWENHQMFFGVDGSEVQYTGG 56
Score = 37 (18.1 bits), Expect = 4.3e-74, Sum P(3) = 4.3e-74
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 635 KPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSV 682
K + K ++G LK SEV + ++ + + G + G++
Sbjct: 583 KSQAKSKPNSSGSLKKTDPSEVVDASLSDKNDSFKVTGSPAILTVGTI 630
>TAIR|locus:2088995 [details] [associations]
symbol:ECT6 "AT3G17330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] EMBL:CP002686
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:BT025338
IPI:IPI00522737 RefSeq:NP_188359.2 UniGene:At.38744
ProteinModelPortal:Q1JPL5 SMR:Q1JPL5 PRIDE:Q1JPL5
EnsemblPlants:AT3G17330.1 GeneID:820996 KEGG:ath:AT3G17330
TAIR:At3g17330 InParanoid:Q1JPL5 OMA:RECPIFL PhylomeDB:Q1JPL5
ProtClustDB:CLSN2682185 Genevestigator:Q1JPL5 Uniprot:Q1JPL5
Length = 595
Score = 701 (251.8 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 136/226 (60%), Positives = 171/226 (75%)
Query: 394 NELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEE 453
+E NRG R + ++NQ L VK G A+ E + I ++PDR YNK DF E
Sbjct: 218 SEQNRGSRTRRSRNQ-------LIVKAYTTKA-GNADAEGN-IVINPDR--YNKEDFSIE 266
Query: 454 YTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVFLLF 509
Y+DA+FFVIKSYSEDDVHKSIKY VW+ST NGNKKL + Y++AQ +KSR CP+FL F
Sbjct: 267 YSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFF 326
Query: 510 SVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 569
SVN+SG F G+AEM GPV F++++++WQQDKW+G FPVKWHI+KDVPNS +HI L NNE
Sbjct: 327 SVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNE 386
Query: 570 NKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
NKPVTNSRDTQEI L+QGL+++K+FK H KT +LDDF +YE RQ+
Sbjct: 387 NKPVTNSRDTQEIILKQGLEVLKLFKHHAEKTSLLDDFMYYEDRQR 432
Score = 45 (20.9 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 81 YPSTAFYYGGYDGNVG 96
YP A+Y GYD +VG
Sbjct: 17 YP--AYYSSGYDSSVG 30
Score = 37 (18.1 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 67 NDFM-DPNM---CYVPNGYPSTAFYYGGYDGN 94
+DF+ D +M Y +GY S+ GG + N
Sbjct: 7 SDFVIDQSMYYPAYYSSGYDSSVGLQGGQNEN 38
>TAIR|locus:2207405 [details] [associations]
symbol:ECT8 "AT1G79270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009805 "coumarin biosynthetic process" evidence=RCA]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=RCA] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AF326910 EMBL:AY113874 IPI:IPI00530579
RefSeq:NP_565205.1 UniGene:At.25521 UniGene:At.48393
ProteinModelPortal:Q9FPE7 SMR:Q9FPE7 IntAct:Q9FPE7 STRING:Q9FPE7
PRIDE:Q9FPE7 EnsemblPlants:AT1G79270.1 GeneID:844267
KEGG:ath:AT1G79270 TAIR:At1g79270 InParanoid:Q9FPE7 OMA:TNGECES
PhylomeDB:Q9FPE7 ProtClustDB:CLSN2917492 ArrayExpress:Q9FPE7
Genevestigator:Q9FPE7 Uniprot:Q9FPE7
Length = 528
Score = 682 (245.1 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 136/237 (57%), Positives = 172/237 (72%)
Query: 396 LNRGP--RAKGAKNQKGSAPNALPVKEQNVLTNGTAE------DENDK---ISLSPDRDE 444
LNR +AK + G++ N L Q+ +TNG E + N++ + RD+
Sbjct: 250 LNRDETEKAKARTKENGTSMNDL-ANGQDHITNGECESCSLDAEGNERSNGVGSVIRRDQ 308
Query: 445 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK----S 500
YN F +Y +A FFVIKSYSEDD+HKSIKY+VW+ST NGNKKLD+AYQE+Q+K S
Sbjct: 309 YNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADKS 368
Query: 501 RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLL 560
CPVFL FSVN SGQF G+AEM G VD+ K++E+WQQDKWTG FPVKWHI+KDVPN L
Sbjct: 369 GKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQQDKWTGYFPVKWHIIKDVPNPQL 428
Query: 561 KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 617
+HI LENNENKPVTNSRDTQE++L QG +++ IFK++ +KT ILDDF FYE R+K +
Sbjct: 429 RHIILENNENKPVTNSRDTQEVRLPQGNEVLNIFKNYAAKTSILDDFDFYENREKVM 485
Score = 60 (26.2 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 30/91 (32%), Positives = 40/91 (43%)
Query: 37 PSANQYGSVDS-VNAAAN-GQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGN 94
P A S S V+A N Q +E S L + Y GY +YY G DG+
Sbjct: 24 PLAKVTASTTSMVSAKENKNQSEAEPSYYETLETYQGLPCPY--GGY--YGYYYPGLDGS 79
Query: 95 VGEWDDYTRYVSQDGVDMTSGVY-GDNGSLM 124
VGE D Y G ++ V G+NGS++
Sbjct: 80 VGEAKDNGYYGY--GTEVQYPVMQGENGSVI 108
>TAIR|locus:2161213 [details] [associations]
symbol:ECT10 "evolutionarily conserved C-terminal region
10" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] EMBL:CP002688 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 IPI:IPI00522420 RefSeq:NP_974954.1 UniGene:At.28271
UniGene:At.29291 ProteinModelPortal:F4KDJ9 SMR:F4KDJ9 PRIDE:F4KDJ9
EnsemblPlants:AT5G58190.2 GeneID:835931 KEGG:ath:AT5G58190
OMA:RFCHILL PhylomeDB:F4KDJ9 Uniprot:F4KDJ9
Length = 528
Score = 648 (233.2 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 117/215 (54%), Positives = 159/215 (73%)
Query: 397 NRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTD 456
NRGPRA K S+ P T G + +D + P+ YN +F +Y +
Sbjct: 275 NRGPRASSRVKSKNSSK---PCS-----TIG--DSASDSSTAGPNPSLYNHPEFVTDYKN 324
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
AKFF++KS+SED+VH+SIKY+VWASTP+GNKKLD AY++A++ CP+FL FSVN SGQ
Sbjct: 325 AKFFIVKSFSEDNVHRSIKYNVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQ 384
Query: 517 FVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNS 576
F G++EM GPVDF K+ YWQQD+W+G FPVKWHIVKD+PN+ HI L+NN+NKPVT+S
Sbjct: 385 FCGVSEMVGPVDFEKDAGYWQQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHS 444
Query: 577 RDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 611
RD+QE+KL QG+++++IFK++ + T ILDDFG+Y+
Sbjct: 445 RDSQEVKLRQGIEMLRIFKEYEAHTSILDDFGYYD 479
Score = 70 (29.7 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 71 DPNMCYVPNGYPSTAFYY------GGYDGNVGEWDDYTRYVSQ--DGVDMTSGVYGDNGS 122
DP Y P+ ++Y GY + WD Y RY + + + + VY DN S
Sbjct: 55 DPAPYYNVLQTPTNLYHYDWDIANSGYAQGINTWDGYPRYATTTPEAMHVPPVVYNDNSS 114
Query: 123 LM 124
LM
Sbjct: 115 LM 116
Score = 46 (21.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 37 PSANQY--GSVDSVNAAANGQIP-SERSGTPFLNDFMDPNMC-YVPNGYPSTAFYYGGYD 92
PSA Y +D +AA IP + G + + D ++ ++P YP T G YD
Sbjct: 150 PSAMHYLPSDIDPTSAAY--MIPYGQYGGGNYSGNQGDISLTSHIP--YPQTMGILGPYD 205
Query: 93 GNVGE 97
N +
Sbjct: 206 HNASQ 210
>TAIR|locus:2010494 [details] [associations]
symbol:ECT9 "AT1G27960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016571 "histone methylation" evidence=RCA]
EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 EMBL:BT022109 IPI:IPI00540009 RefSeq:NP_174117.2
UniGene:At.40970 ProteinModelPortal:Q500V8 SMR:Q500V8
EnsemblPlants:AT1G27960.1 GeneID:839689 KEGG:ath:AT1G27960
TAIR:At1g27960 InParanoid:Q500V8 OMA:DIFISCE PhylomeDB:Q500V8
ProtClustDB:CLSN2918485 Genevestigator:Q500V8 Uniprot:Q500V8
Length = 539
Score = 634 (228.2 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 118/181 (65%), Positives = 147/181 (81%)
Query: 438 LSPDR-DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEA 496
+S DR D + + + ++ DAKFFVIKSYSED+VHKSIK+ VWAST NGNKKLDAAY+EA
Sbjct: 310 ISYDRVDRFCQQELLSQFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREA 369
Query: 497 QQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVP 556
++K +CPVFLLFSVN S QF G+AEM GPVDFN +VEYWQQD+W+G FPV+W IVKDVP
Sbjct: 370 KKKDVACPVFLLFSVNASSQFCGVAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVP 429
Query: 557 NSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKT 616
NSL +HI +E+N+NKPVTNSRDTQE+ LE+G++++ IF ++ ILDDF FYE RQ
Sbjct: 430 NSLFRHIIIESNDNKPVTNSRDTQEVGLEKGIEMLDIFISCEMRSSILDDFNFYEERQIA 489
Query: 617 I 617
I
Sbjct: 490 I 490
Score = 45 (20.9 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 390 MDGLNELNRGPRA 402
+D L E NRGPRA
Sbjct: 288 LDMLTESNRGPRA 300
>TAIR|locus:2024286 [details] [associations]
symbol:ECT11 "AT1G09810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK221696 EMBL:AK226991 IPI:IPI00570420
RefSeq:NP_172452.3 UniGene:At.42210 ProteinModelPortal:Q56XH8
SMR:Q56XH8 PRIDE:Q56XH8 EnsemblPlants:AT1G09810.1 GeneID:837511
KEGG:ath:AT1G09810 TAIR:At1g09810 HOGENOM:HOG000137356
InParanoid:Q56XH8 OMA:WSSTING PhylomeDB:Q56XH8
ProtClustDB:CLSN2920224 Genevestigator:Q56XH8 Uniprot:Q56XH8
Length = 470
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 128/231 (55%), Positives = 169/231 (73%)
Query: 391 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 450
D L EL GPRA AK + S + P+K+ N+ +L+ R+ YN DF
Sbjct: 180 DYLVELKCGPRAN-AKTRPPSESS--PLKQ------------NNSFALALRREMYNLPDF 224
Query: 451 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKS----RSCPVF 506
+Y DAKFFVIKSYSEDDVHKSIKYSVW+ST NGNKKLDAA+++A+ K+ + P+F
Sbjct: 225 QTDYEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIF 284
Query: 507 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 566
L FSVN S QFVGLAEM G VDFNK++++WQ DKW+G FPV+WH+VKD+PN L+HI L+
Sbjct: 285 LFFSVNASRQFVGLAEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILD 344
Query: 567 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 617
NNE+KPVT++RDT EIKL++GL+++ IFK + + T +LDD FYE R+K++
Sbjct: 345 NNEDKPVTHTRDTHEIKLKEGLQMLSIFKKYSAVTFLLDDMDFYEEREKSL 395
>MGI|MGI:1917431 [details] [associations]
symbol:Ythdf1 "YTH domain family 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1917431 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
EMBL:AK046768 EMBL:AK172582 EMBL:BC061479 EMBL:BC065050
IPI:IPI00187444 RefSeq:NP_776122.1 UniGene:Mm.30205
ProteinModelPortal:P59326 SMR:P59326 STRING:P59326
PhosphoSite:P59326 PaxDb:P59326 PRIDE:P59326
Ensembl:ENSMUST00000037299 GeneID:228994 KEGG:mmu:228994 CTD:54915
HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
ChiTaRS:YTHDF1 NextBio:379293 Bgee:P59326 CleanEx:MM_YTHDF1
Genevestigator:P59326 GermOnline:ENSMUSG00000038848 Uniprot:P59326
Length = 559
Score = 518 (187.4 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 103/212 (48%), Positives = 133/212 (62%)
Query: 404 GAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIK 463
GA + S NA P +V ++ E K+ + YN +F + F+IK
Sbjct: 343 GANSDSNSVGNAQPTSAPSVESHPVLE----KLKAA---HSYNPKEFDWNLKSGRVFIIK 395
Query: 464 SYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEM 523
SYSEDD+H+SIKYS+W ST +GNK+LD A++ K PV+LLFSVN SG F G+AEM
Sbjct: 396 SYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEM 452
Query: 524 AGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIK 583
PVD+ + W QDKW G F VKW VKDVPN+ L+HI LENN+NKPVTNSRDTQE+
Sbjct: 453 KSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVP 512
Query: 584 LEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
LE+ +++KI + T I DDF YE RQ+
Sbjct: 513 LEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544
Score = 49 (22.3 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 389 NMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQ 421
NMD N+GP K + Q+ +P A P +Q
Sbjct: 268 NMDIGTWDNKGPAPKASAPQQTPSPQAAPQPQQ 300
>UNIPROTKB|Q9Y5A9 [details] [associations]
symbol:YTHDF2 "YTH domain family protein 2" species:9606
"Homo sapiens" [GO:0006959 "humoral immune response" evidence=TAS]
EMBL:CH471059 GO:GO:0006959 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AL645729 eggNOG:NOG276347 HOVERGEN:HBG060315
EMBL:AF155095 EMBL:AF192968 EMBL:AF432214 EMBL:AK292581
EMBL:AK303833 EMBL:AL356786 EMBL:BC002559 IPI:IPI00306043
IPI:IPI00397024 RefSeq:NP_001166299.1 RefSeq:NP_001166599.1
RefSeq:NP_057342.2 UniGene:Hs.532286 ProteinModelPortal:Q9Y5A9
SMR:Q9Y5A9 IntAct:Q9Y5A9 STRING:Q9Y5A9 PhosphoSite:Q9Y5A9
DMDM:41019527 PaxDb:Q9Y5A9 PRIDE:Q9Y5A9 DNASU:51441
Ensembl:ENST00000373812 Ensembl:ENST00000541996
Ensembl:ENST00000542507 GeneID:51441 KEGG:hsa:51441 UCSC:uc001brc.3
CTD:51441 GeneCards:GC01P029063 HGNC:HGNC:31675 MIM:610640
neXtProt:NX_Q9Y5A9 PharmGKB:PA134964518 InParanoid:Q9Y5A9
OMA:SVPKVVG OrthoDB:EOG4001J0 PhylomeDB:Q9Y5A9 GenomeRNAi:51441
NextBio:55027 PMAP-CutDB:Q9Y5A9 ArrayExpress:Q9Y5A9 Bgee:Q9Y5A9
CleanEx:HS_YTHDF2 Genevestigator:Q9Y5A9 GermOnline:ENSG00000198492
Uniprot:Q9Y5A9
Length = 579
Score = 512 (185.3 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 97/173 (56%), Positives = 119/173 (68%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+ K
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
PV+LLFSVN SG F G+AEM VD+N W QDKW G F V+W VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
I LENNENKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565
Score = 40 (19.1 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 349 GVGFGSNGYDLRTNGRG 365
G GFG NG D NG G
Sbjct: 358 GSGFGHNGVD--GNGVG 372
>MGI|MGI:1918850 [details] [associations]
symbol:Ythdf3 "YTH domain family 3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1918850 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
HOGENOM:HOG000232058 HOVERGEN:HBG060315 CTD:253943
OrthoDB:EOG4RR6H8 EMBL:AK137245 EMBL:AK039176 EMBL:AK053736
EMBL:BC057158 EMBL:BC067040 EMBL:BC067042 IPI:IPI00227149
IPI:IPI00465894 IPI:IPI00742314 RefSeq:NP_001139391.1
RefSeq:NP_766265.3 UniGene:Mm.23834 ProteinModelPortal:Q8BYK6
SMR:Q8BYK6 STRING:Q8BYK6 PhosphoSite:Q8BYK6 PaxDb:Q8BYK6
PRIDE:Q8BYK6 Ensembl:ENSMUST00000108345 Ensembl:ENSMUST00000108346
GeneID:229096 KEGG:mmu:229096 UCSC:uc008org.2 UCSC:uc008orh.2
UCSC:uc008ori.2 OMA:STGMTSI ChiTaRS:YTHDF3 NextBio:379337
Bgee:Q8BYK6 CleanEx:MM_YTHDF3 Genevestigator:Q8BYK6 Uniprot:Q8BYK6
Length = 585
Score = 507 (183.5 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 96/173 (55%), Positives = 119/173 (68%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+ K
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
P++LLFSVN SG F G+AEM VD+N W QDKW G F VKW VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
I LENN+NKPVTNSRDTQE+ LE+ +++KI T I DDF YE RQ+
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
Score = 41 (19.5 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 64 PFLNDFMDPNMCYVPNGYPSTAFYYG---GYDGNVGE 97
P+L+ + N Y P P YY G+ ++GE
Sbjct: 37 PYLSSQTNQNNSYPPMSDPYMPSYYAPSIGFPYSLGE 73
>ZFIN|ZDB-GENE-040426-2786 [details] [associations]
symbol:ythdf1 "YTH domain family, member 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-040426-2786 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
CTD:54915 HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
EMBL:BX649575 EMBL:CR759927 EMBL:BC046885 IPI:IPI00501109
RefSeq:NP_997878.1 UniGene:Dr.116333 Ensembl:ENSDART00000025171
GeneID:327606 KEGG:dre:327606 InParanoid:Q802Z0 OMA:PSMTDPY
NextBio:20810106 Uniprot:Q802Z0
Length = 614
Score = 502 (181.8 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 94/171 (54%), Positives = 119/171 (69%)
Query: 445 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 504
YN +F + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD+A++ K P
Sbjct: 417 YNPKEFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRAINGKG---P 473
Query: 505 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 564
V+LLFSVN SG F G+AEM PVD+ + W QDKW G F V W VKDVPNS L+HI
Sbjct: 474 VYLLFSVNGSGHFCGVAEMRSPVDYGTSAGVWAQDKWKGKFDVDWLFVKDVPNSQLRHIR 533
Query: 565 LENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
LENN+NKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+
Sbjct: 534 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATYKHTTSIFDDFSHYEKRQE 584
Score = 43 (20.2 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 30 ISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTP 64
++ + P GSVDS +++ G + + G P
Sbjct: 362 VAPRNRNPGYGGGGSVDSSGSSSGGGVGNGGGGGP 396
>UNIPROTKB|Q7Z739 [details] [associations]
symbol:YTHDF3 "YTH domain family protein 3" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
EMBL:CH471068 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 HOVERGEN:HBG060315 EMBL:AK127574 EMBL:AL832005
EMBL:BX537996 EMBL:BC052970 IPI:IPI00396131 RefSeq:NP_689971.4
UniGene:Hs.491861 ProteinModelPortal:Q7Z739 SMR:Q7Z739
IntAct:Q7Z739 STRING:Q7Z739 PhosphoSite:Q7Z739 DMDM:74738853
PaxDb:Q7Z739 PRIDE:Q7Z739 DNASU:253943 GeneID:253943
KEGG:hsa:253943 UCSC:uc003xuy.3 CTD:253943 GeneCards:GC08P064081
HGNC:HGNC:26465 neXtProt:NX_Q7Z739 PharmGKB:PA134976395
InParanoid:Q7Z739 OrthoDB:EOG4RR6H8 GenomeRNAi:253943 NextBio:92198
PMAP-CutDB:Q7Z739 CleanEx:HS_YTHDF3 Genevestigator:Q7Z739
Uniprot:Q7Z739
Length = 585
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 96/173 (55%), Positives = 119/173 (68%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+ K
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
P++LLFSVN SG F G+AEM VD+N W QDKW G F VKW VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 615
I LENN+NKPVTNSRDTQE+ LE+ +++KI T I DDF YE RQ+
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>CGD|CAL0002569 [details] [associations]
symbol:orf19.1939 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 343 (125.8 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 70/159 (44%), Positives = 98/159 (61%)
Query: 445 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSR--- 501
Y A F T +KFFVIKSY+ DV+ S +++W ST GN++LD AY E + +
Sbjct: 205 YTGAIFTVPKT-SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDV 263
Query: 502 SCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW-QQDKWTGCFPVKWHIVKDVPNSLL 560
+FL FSVN+SG+F G+AEM +DF W +Q +W G FPV+W ++KDVPN
Sbjct: 264 DGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWCEQTRWKGIFPVEWLLIKDVPNKFF 323
Query: 561 KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 599
+H+ + N+ K VTNSRDTQEI + G+ ++KI S
Sbjct: 324 QHLKIPANDYKLVTNSRDTQEIPFDIGISMLKIVSSFKS 362
>UNIPROTKB|Q5A1Q7 [details] [associations]
symbol:CaO19.1939 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 343 (125.8 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 70/159 (44%), Positives = 98/159 (61%)
Query: 445 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSR--- 501
Y A F T +KFFVIKSY+ DV+ S +++W ST GN++LD AY E + +
Sbjct: 205 YTGAIFTVPKT-SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDV 263
Query: 502 SCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW-QQDKWTGCFPVKWHIVKDVPNSLL 560
+FL FSVN+SG+F G+AEM +DF W +Q +W G FPV+W ++KDVPN
Sbjct: 264 DGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWCEQTRWKGIFPVEWLLIKDVPNKFF 323
Query: 561 KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 599
+H+ + N+ K VTNSRDTQEI + G+ ++KI S
Sbjct: 324 QHLKIPANDYKLVTNSRDTQEIPFDIGISMLKIVSSFKS 362
>SGD|S000002782 [details] [associations]
symbol:YDR374C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
SGD:S000002782 EMBL:BK006938 EMBL:U28373 KO:K02139
RefSeq:NP_010665.3 GeneID:851983 KEGG:sce:YDR377W
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 RefSeq:NP_010662.3
GeneID:851980 KEGG:sce:YDR374C PIR:S61169 ProteinModelPortal:Q06390
SMR:Q06390 DIP:DIP-5677N IntAct:Q06390 MINT:MINT-514883
STRING:Q06390 EnsemblFungi:YDR374C CYGD:YDR374c eggNOG:NOG276347
GeneTree:ENSGT00390000017549 HOGENOM:HOG000001065 OrthoDB:EOG4K9FMS
NextBio:970124 Genevestigator:Q06390 GermOnline:YDR374C
Uniprot:Q06390
Length = 306
Score = 295 (108.9 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 60/145 (41%), Positives = 90/145 (62%)
Query: 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 515
+++FFVIKS S V +S +W+ST GNK+L AY++ ++ VFL FS+NTSG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK---VFLFFSINTSG 210
Query: 516 QFVGLAEMAGPVDFNKNVEYWQQD-KWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVT 574
+F G+AEM + + + W+ + K+ F V+W IV+D+ N LK + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270
Query: 575 NSRDTQEIKLEQGLKLIKIFKDHPS 599
+SRDTQEI G+ +I +FK S
Sbjct: 271 HSRDTQEIPYSIGISIINLFKTQDS 295
>UNIPROTKB|F1NS70 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:AADN02056192 EMBL:AADN02056193
IPI:IPI00591470 Ensembl:ENSGALT00000000247 Uniprot:F1NS70
Length = 1339
Score = 200 (75.5 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 57/201 (28%), Positives = 101/201 (50%)
Query: 400 PRAKGAKNQKGSAPNALPVKEQN-VLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAK 458
PR KN S + +Q+ V + ++ + +S SP + +K P +
Sbjct: 1137 PRRHKEKNVVASKRTSDEKSDQSSVKSTDSSCYPSPCVSPSPVSGKGSKTPSPRLSMPVR 1196
Query: 459 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFV 518
+F++KS + ++ S + +W++TP+ +KL+ A+ E S V+L+FSV SG F
Sbjct: 1197 YFIMKSSNLQNLDISQQKGIWSTTPSNEQKLNRAFWE------SSLVYLIFSVQGSGHFQ 1250
Query: 519 GLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRD 578
G A M+ + ++ + W G F V+W + +P H+ N+NK V SRD
Sbjct: 1251 GFARMSSEIGCEQS-QCWGSTGLGGVFKVEWIRKESIPFQFTHHLLNPWNDNKEVQISRD 1309
Query: 579 TQEIKLEQGLKLIKIFKDHPS 599
QE++ + G +L+K++ DH S
Sbjct: 1310 GQELEPQIGEQLLKLW-DHTS 1329
>UNIPROTKB|Q96MU7 [details] [associations]
symbol:YTHDC1 "YTH domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0016604 GO:GO:0000398 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK056430 EMBL:AC074378 EMBL:BC041119
EMBL:BC053863 EMBL:AB075846 IPI:IPI00144293 IPI:IPI00376222
RefSeq:NP_001026902.1 RefSeq:NP_588611.2 UniGene:Hs.175955 PDB:2YUD
PDBsum:2YUD ProteinModelPortal:Q96MU7 SMR:Q96MU7 IntAct:Q96MU7
STRING:Q96MU7 PhosphoSite:Q96MU7 DMDM:47606762 PaxDb:Q96MU7
PRIDE:Q96MU7 Ensembl:ENST00000344157 Ensembl:ENST00000355665
GeneID:91746 KEGG:hsa:91746 UCSC:uc003hdx.3 UCSC:uc003hdy.3
CTD:91746 GeneCards:GC04M069176 HGNC:HGNC:30626 HPA:HPA036462
HPA:HPA036463 neXtProt:NX_Q96MU7 PharmGKB:PA143485673
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
InParanoid:Q96MU7 OMA:VIHKMRH OrthoDB:EOG4ZW5BC PhylomeDB:Q96MU7
ChiTaRS:YTHDC1 EvolutionaryTrace:Q96MU7 GenomeRNAi:91746
NextBio:77419 Bgee:Q96MU7 CleanEx:HS_YTHDC1 Genevestigator:Q96MU7
GermOnline:ENSG00000083896 Uniprot:Q96MU7
Length = 727
Score = 196 (74.1 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 57/175 (32%), Positives = 94/175 (53%)
Query: 429 AEDENDKISLSPD---RDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 485
+E +++K+S S +D+ +K + + DA+FF+IKS + ++V + VW++ P
Sbjct: 326 SEKKHEKLSSSVRAVRKDQTSKLKYVLQ--DARFFLIKSNNHENVSLAKAKGVWSTLPVN 383
Query: 486 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW-----QQDK 540
KKL+ A++ A RS V L+FSV SG+F G A ++ + +W K
Sbjct: 384 EKKLNLAFRSA----RS--VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAK 437
Query: 541 WTG-CFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 594
G F + W +++P + H+T NE+KPV RD QEI+LE G +L +F
Sbjct: 438 MLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492
>RGD|621706 [details] [associations]
symbol:Ythdc1 "YTH domain containing 1" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] RGD:621706 GO:GO:0016604 GO:GO:0000398
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 CTD:91746
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
OrthoDB:EOG4ZW5BC EMBL:D78303 EMBL:AF144731 IPI:IPI00196301
IPI:IPI00213467 RefSeq:NP_596914.1 UniGene:Rn.48752
ProteinModelPortal:Q9QY02 SMR:Q9QY02 STRING:Q9QY02
PhosphoSite:Q9QY02 PRIDE:Q9QY02 GeneID:170956 KEGG:rno:170956
UCSC:RGD:621706 InParanoid:Q9QY02 NextBio:621483
ArrayExpress:Q9QY02 Genevestigator:Q9QY02
GermOnline:ENSRNOG00000001996 Uniprot:Q9QY02
Length = 738
Score = 193 (73.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/175 (32%), Positives = 92/175 (52%)
Query: 429 AEDENDKISLSPD---RDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 485
+E +++K+S S +D+ +K DA+FF+IKS + ++V + VW++ P
Sbjct: 329 SEKKHEKLSSSVRAVRKDQTSK--LKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVN 386
Query: 486 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW-----QQDK 540
KKL+ A++ A RS V L+FSV SG+F G A ++ + +W K
Sbjct: 387 EKKLNLAFRSA----RS--VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAK 440
Query: 541 WTG-CFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 594
G F + W +++P + H+T NE+KPV RD QEI+LE G +L +F
Sbjct: 441 MLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 495
>TAIR|locus:2118046 [details] [associations]
symbol:AT4G11970 "AT4G11970" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48848 UniGene:At.68491 IPI:IPI00541281
RefSeq:NP_192934.2 ProteinModelPortal:F4JPV2 SMR:F4JPV2
PRIDE:F4JPV2 EnsemblPlants:AT4G11970.1 GeneID:826804
KEGG:ath:AT4G11970 OMA:GIWATQV PhylomeDB:F4JPV2 Uniprot:F4JPV2
Length = 444
Score = 187 (70.9 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 51/161 (31%), Positives = 84/161 (52%)
Query: 440 PDRDEYNKADFPEE--YTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ 497
PD+ E KA+ + Y ++F+IKS + D++ S++ +WA+ L+ A+ ++
Sbjct: 54 PDQLESAKANKNSKPGYR-TRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSG 112
Query: 498 QKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIV 552
+ V L+FSVN SG F G AEM PV + ++ + W Q + W F VKW +
Sbjct: 113 R------VILIFSVNMSGFFQGYAEMLSPVGWRRD-QIWSQGGGKNNPWGRSFKVKWLRL 165
Query: 553 KDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKI 593
++P H+ N+ KPV SRD QE+ + G L ++
Sbjct: 166 SELPFQKTLHLKNPLNDYKPVKISRDCQELPEDIGEALCEL 206
>ZFIN|ZDB-GENE-041114-114 [details] [associations]
symbol:ythdc1 "YTH domain containing 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-041114-114 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:91746 HOVERGEN:HBG055528 EMBL:BC085378
IPI:IPI00509525 RefSeq:NP_001007411.1 UniGene:Dr.84175
ProteinModelPortal:Q5U3V6 SMR:Q5U3V6 PRIDE:Q5U3V6 GeneID:492769
KEGG:dre:492769 InParanoid:Q5U3V6 NextBio:20865266 Bgee:Q5U3V6
Uniprot:Q5U3V6
Length = 679
Score = 187 (70.9 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 61/210 (29%), Positives = 103/210 (49%)
Query: 394 NELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSP-D--RDEYNKADF 450
N+ + A ++++ S + V + +E +++K+S S D +D NK
Sbjct: 235 NDYDTRSEASDSRSESVSFSDGESVHSASGSDASGSEKKHEKLSSSVRDVRKDRINK--L 292
Query: 451 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFS 510
+A+FF+IKS + ++V + VW++ P KKL+AA++ A RS V L+FS
Sbjct: 293 KHILREARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRAA----RS--VVLIFS 346
Query: 511 VNTSGQFVGLAEMAGPVDFNKNVEYW-----QQDKWTG-CFPVKWHIVKDVPNSLLKHIT 564
V SG+F G A ++ + +W K G F + W +++P + H+
Sbjct: 347 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLGGVFKIDWICRRELPFTKTAHLA 406
Query: 565 LENNENKPVTNSRDTQEIKLEQGLKLIKIF 594
NE+KPV RD QEI+ E G +L +F
Sbjct: 407 NPWNEHKPVKIGRDGQEIEPECGTELCMLF 436
>FB|FBgn0027616 [details] [associations]
symbol:YT521-B "YT521-B" species:7227 "Drosophila
melanogaster" [GO:0016604 "nuclear body" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] EMBL:AE014296 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 FlyBase:FBgn0027616 UniGene:Dm.7409 GeneID:38420
KEGG:dme:Dmel_CG12076 CTD:38420 GeneTree:ENSGT00690000102240
GenomeRNAi:38420 NextBio:808571 RefSeq:NP_647811.2
ProteinModelPortal:Q9VZQ1 SMR:Q9VZQ1 IntAct:Q9VZQ1
EnsemblMetazoa:FBtr0073078 UCSC:CG12076-RA InParanoid:Q9VZQ1
OMA:ADYMRNM PhylomeDB:Q9VZQ1 ArrayExpress:Q9VZQ1 Bgee:Q9VZQ1
Uniprot:Q9VZQ1
Length = 721
Score = 185 (70.2 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 62/206 (30%), Positives = 95/206 (46%)
Query: 397 NRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTD 456
N G +G + K S P E++ + GT + K D K ++ + D
Sbjct: 208 NGGGNGRGKPSSKSSTP------EKDSVGGGT-HSHSQK-----GYDYMTKLNYL--FRD 253
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
+FF+IKS + D+V S SVWA+ P + L+ A++EA+ V L+FSVN SG+
Sbjct: 254 TRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQAFKEARN------VLLIFSVNESGK 307
Query: 517 FVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNEN 570
F G A MA P + W G + W K++ + H+ NE
Sbjct: 308 FAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHLHNTWNEG 367
Query: 571 KPVTNSRDTQEIKLEQGLKLIKIFKD 596
KPV RD QEI+ + G +L ++F +
Sbjct: 368 KPVKIGRDGQEIEPKIGGELCRLFPE 393
>UNIPROTKB|E2QZR7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 GO:GO:0008026
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 OMA:RAFWESS
EMBL:AAEX03007702 Ensembl:ENSCAFT00000000357 Uniprot:E2QZR7
Length = 1376
Score = 185 (70.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 44/159 (27%), Positives = 84/159 (52%)
Query: 440 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 499
P + +K+ P ++F++KS + ++ S + +W++TP+ +KL+ A+ E+
Sbjct: 1217 PSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM- 1275
Query: 500 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSL 559
V+L+FSV SG F G + M+ + K+ + W G F V+W + +P
Sbjct: 1276 -----VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWVRKESLPFQF 1329
Query: 560 LKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
H+ N+NK V SRD QE++ + G +L+++++ P
Sbjct: 1330 AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLP 1368
>UNIPROTKB|F1MNU7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:64848 OMA:RAFWESS EMBL:DAAA02027655
IPI:IPI00689346 RefSeq:NP_001179740.1 UniGene:Bt.24975
ProteinModelPortal:F1MNU7 Ensembl:ENSBTAT00000018745 GeneID:541024
KEGG:bta:541024 NextBio:20878969 Uniprot:F1MNU7
Length = 1429
Score = 185 (70.2 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/159 (27%), Positives = 85/159 (53%)
Query: 440 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 499
P + +K+ P+ ++F++KS + ++ S + +W++TP+ +KL+ A+ E+
Sbjct: 1270 PSSAKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM- 1328
Query: 500 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSL 559
V+L+FSV SG F G + M+ + K+ + W G F V+W + +P
Sbjct: 1329 -----VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQF 1382
Query: 560 LKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
H+ N+NK V SRD QE++ + G +L+++++ P
Sbjct: 1383 AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLP 1421
>UNIPROTKB|Q9H6S0 [details] [associations]
symbol:YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AC093208 EMBL:AC010389 EMBL:BC137285
EMBL:AK025593 IPI:IPI00010200 RefSeq:NP_073739.3 UniGene:Hs.231942
PDB:2YU6 PDBsum:2YU6 ProteinModelPortal:Q9H6S0 SMR:Q9H6S0
IntAct:Q9H6S0 PhosphoSite:Q9H6S0 DMDM:239938805 PaxDb:Q9H6S0
PeptideAtlas:Q9H6S0 PRIDE:Q9H6S0 Ensembl:ENST00000161863
GeneID:64848 KEGG:hsa:64848 UCSC:uc003kqn.3 CTD:64848
GeneCards:GC05P112877 HGNC:HGNC:24721 HPA:HPA037364
neXtProt:NX_Q9H6S0 PharmGKB:PA134912676 HOGENOM:HOG000155703
HOVERGEN:HBG063891 InParanoid:Q9H6S0 OMA:RAFWESS OrthoDB:EOG4JWVCN
PhylomeDB:Q9H6S0 EvolutionaryTrace:Q9H6S0 GenomeRNAi:64848
NextBio:66962 ArrayExpress:Q9H6S0 Bgee:Q9H6S0 CleanEx:HS_YTHDC2
Genevestigator:Q9H6S0 GermOnline:ENSG00000047188 Uniprot:Q9H6S0
Length = 1430
Score = 180 (68.4 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 45/159 (28%), Positives = 83/159 (52%)
Query: 440 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 499
P + +K+ P ++F++KS + ++ S + +W++TP+ +KL+ A+ E
Sbjct: 1271 PSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE---- 1326
Query: 500 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSL 559
S V+L+FSV SG F G + M+ + K+ + W G F V+W + +P
Sbjct: 1327 --SSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQF 1383
Query: 560 LKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
H+ N+NK V SRD QE++ G +L+++++ P
Sbjct: 1384 AHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLWERLP 1422
>UNIPROTKB|F1RLG0 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002110 InterPro:IPR001650
InterPro:IPR007502 Pfam:PF00271 Pfam:PF04408 PROSITE:PS50088
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00700000104393
InterPro:IPR011709 Pfam:PF07717 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:CU462841
Ensembl:ENSSSCT00000015529 Uniprot:F1RLG0
Length = 1151
Score = 185 (70.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 44/159 (27%), Positives = 84/159 (52%)
Query: 440 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 499
P + +K+ P ++F++KS + ++ S + +W++TP+ +KL+ A+ E+
Sbjct: 992 PSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM- 1050
Query: 500 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSL 559
V+L+FSV SG F G + M+ + K+ + W G F V+W + +P
Sbjct: 1051 -----VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQF 1104
Query: 560 LKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
H+ N+NK V SRD QE++ + G +L+++++ P
Sbjct: 1105 AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLP 1143
Score = 38 (18.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 410 GSAPNALPVKEQNVLTNGTAE 430
G PN + V +NV+ G E
Sbjct: 699 GMYPNLVHVDRENVVLTGPKE 719
>MGI|MGI:2448561 [details] [associations]
symbol:Ythdc2 "YTH domain containing 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
MGI:MGI:2448561 GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683
Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
GeneTree:ENSGT00700000104393 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
CTD:64848 HOGENOM:HOG000155703 OMA:RAFWESS OrthoDB:EOG4JWVCN
EMBL:BC138263 EMBL:BC171951 IPI:IPI00343249 RefSeq:NP_001156485.1
UniGene:Mm.244482 ProteinModelPortal:B2RR83 SMR:B2RR83
PhosphoSite:B2RR83 PaxDb:B2RR83 PRIDE:B2RR83
Ensembl:ENSMUST00000037763 GeneID:240255 KEGG:mmu:240255
UCSC:uc008evb.2 InParanoid:B2RR83 ChiTaRS:YTHDC2 NextBio:384522
Bgee:B2RR83 Genevestigator:B2RR83 Uniprot:B2RR83
Length = 1445
Score = 185 (70.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 44/159 (27%), Positives = 84/159 (52%)
Query: 440 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 499
P + +K+ P ++F++KS + ++ S + +W++TP+ +KL+ A+ E+
Sbjct: 1286 PSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM- 1344
Query: 500 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSL 559
V+L+FSV SG F G + M+ + K+ + W G F V+W + +P
Sbjct: 1345 -----VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQF 1398
Query: 560 LKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
H+ N+NK V SRD QE++ + G +L+++++ P
Sbjct: 1399 AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLP 1437
Score = 39 (18.8 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 410 GSAPNALPVKEQNVLTNGTAE 430
G PN + V +NV+ G E
Sbjct: 993 GMYPNLVHVDRENVILTGPKE 1013
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 153 (58.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 50/169 (29%), Positives = 78/169 (46%)
Query: 437 SLSPD-RDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQE 495
+L P+ D+ N+ P ++FV+KS + ++ S++ VWA+ + KL+ A+
Sbjct: 216 TLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDS 275
Query: 496 AQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGC----FPVKWHI 551
+ V L+FSVN + F G A+M + W+ + T F VKW
Sbjct: 276 VEN------VILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKW-- 327
Query: 552 VKDVPNSLLKHITLEN--NENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 598
+K S K L N NEN PV SRD QE++ G +L + P
Sbjct: 328 LKLCELSFHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEP 376
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 711 595 0.00084 120 3 11 23 0.49 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 624 (66 KB)
Total size of DFA: 359 KB (2177 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.43u 0.11s 52.54t Elapsed: 00:00:03
Total cpu time: 52.44u 0.11s 52.55t Elapsed: 00:00:03
Start: Mon May 20 19:13:56 2013 End: Mon May 20 19:13:59 2013