Query 005152
Match_columns 711
No_of_seqs 198 out of 361
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 18:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 8.6E-84 1.9E-88 696.7 33.9 459 94-626 3-468 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 2.1E-48 4.5E-53 364.2 8.9 136 456-597 1-140 (140)
3 KOG1902 Putative signal transd 100.0 8.3E-41 1.8E-45 347.9 11.6 149 443-599 60-213 (441)
4 PRK00809 hypothetical protein; 94.1 0.21 4.6E-06 48.4 7.9 121 458-591 2-142 (144)
5 PF01878 EVE: EVE domain; Int 82.2 3 6.6E-05 39.3 5.7 128 458-593 1-143 (143)
6 PRK02268 hypothetical protein; 50.0 96 0.0021 30.7 8.5 119 458-595 3-137 (141)
7 PF03875 Statherin: Statherin; 42.3 24 0.00053 28.1 2.5 28 129-167 14-41 (42)
8 PF10539 Dev_Cell_Death: Devel 30.2 1E+02 0.0022 30.3 5.1 116 465-594 8-130 (130)
9 KOG0260 RNA polymerase II, lar 29.8 1.5E+03 0.032 30.2 18.5 14 133-146 1432-1445(1605)
10 KOG0921 Dosage compensation co 13.8 1.5E+03 0.032 29.5 11.2 131 258-405 1143-1282(1282)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=8.6e-84 Score=696.65 Aligned_cols=459 Identities=44% Similarity=0.665 Sum_probs=328.2
Q ss_pred CCCCCCccccccccCCCCCCcccccCCCcccc-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 005152 94 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT 169 (711)
Q Consensus 94 ~~~~W~~y~~Yvn~dg~e~~~gvy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp-~yyq~~~ 169 (711)
.+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++ .||.|+++ .++++|.|++++.+|++++. ++|-
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~--- 74 (487)
T KOG1901|consen 3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYG--- 74 (487)
T ss_pred CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcC---
Confidence 4456 899999999994434 44555555444 333333 23444433 34588999999999999997 5554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005152 170 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 249 (711)
Q Consensus 170 ~~~~~y~~s~~~~~q~e~~~~~~~d~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~s~gsyg~g~~~~~~p~ 249 (711)
+...|+........++++....... ...+..+. +. +.+..|... ..+.++ ..-+.+.|.
T Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~ 133 (487)
T KOG1901|consen 75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP 133 (487)
T ss_pred cccCccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence 2223333333333344443322221 01111111 10 122222221 111121 122223444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 005152 250 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM 328 (711)
Q Consensus 250 ~gy~~~~~~~dg~~~~~~w~d~~~~s~~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (711)
.+|.+|++.++..... +..++..+.+++.+....+.+.++ ...+|+
T Consensus 134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 180 (487)
T KOG1901|consen 134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY 180 (487)
T ss_pred cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence 5777777666541100 112222223333333333443332 345666
Q ss_pred ccCccCC-CccccCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCC-CCccccccccCCCCCCCCC
Q 005152 329 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGN-ENMDGLNELNRGPRAKGAK 406 (711)
Q Consensus 329 ~~~~~y~-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~-~~~d~~~e~nrgpr~~~~~ 406 (711)
+.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+.. ......+ ...+.++|+|||||+...+
T Consensus 181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nrg~~s~~~~ 257 (487)
T KOG1901|consen 181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGIN-YPRLPSDEAGSDSLNEQNRGPRSSDSR 257 (487)
T ss_pred --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccccc-CCCccccccccccccccccCccccccc
Confidence 55555 34566666555668889999999889999999999765544422 2222333 2378899999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchh
Q 005152 407 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 486 (711)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~~f~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaSTp~nn 486 (711)
++.........+...+.+ +...+++++++||+++|++.|.+|||||||||+|||||+||||+|||+|+++|
T Consensus 258 ~~~~~~~~~~~~~~~s~~---------~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN 328 (487)
T KOG1901|consen 258 GQDINSSGPTEAGSASAP---------ESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN 328 (487)
T ss_pred CccccCCcchhccccccc---------cccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence 887655433333221111 11256889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhccccccCccceeEEEeecCCCccccccccC
Q 005152 487 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 566 (711)
Q Consensus 487 kKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~~~WqqdKw~G~F~VkWi~VkDVPf~~lrHI~N~ 566 (711)
||||+|||+++.|.++||||||||||+||||||||||++||||+++++||+||||.|.|+||||+||||||..||||+++
T Consensus 329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le 408 (487)
T KOG1901|consen 329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE 408 (487)
T ss_pred hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCcccchHHHHHHHHHHhcCCCCcccccchhhhHHHHHHHHHHHHHhHH
Q 005152 567 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ 626 (711)
Q Consensus 567 nNeNKPVt~SRDgQEIe~e~G~qLLkIF~~~~~~tSIlDDF~~Ye~rek~~~e~r~~~~~ 626 (711)
+|||||||++||+|||.+++|++||+||++|.++|||||||.|||.||+.|+++|+|++.
T Consensus 409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~ 468 (487)
T KOG1901|consen 409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP 468 (487)
T ss_pred cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence 999999999999999999999999999999999999999999999999999999998864
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=2.1e-48 Score=364.21 Aligned_cols=136 Identities=50% Similarity=0.887 Sum_probs=114.2
Q ss_pred CceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchh
Q 005152 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 535 (711)
Q Consensus 456 ~ARFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~~~ 535 (711)
++|||||||+|++|||+|+++|||+|+++++++|++||+++ ++||||||||+||+|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 57999999999999999999999999999999999999998 389999999999999999999999999998999
Q ss_pred hc----cccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005152 536 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 597 (711)
Q Consensus 536 Wq----qdKw~G~F~VkWi~VkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 597 (711)
|. ..+|+|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 369999999999999999999999999999999999999999999999999999999863
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=8.3e-41 Score=347.89 Aligned_cols=149 Identities=36% Similarity=0.615 Sum_probs=138.1
Q ss_pred ccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEE
Q 005152 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE 522 (711)
Q Consensus 443 ~qyN~~~f~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~Ae 522 (711)
+++++...+. ..+|||||||.|.+||.+|++.|||+|++.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5666655544 678999999999999999999999999999999999999998 48999999999999999999
Q ss_pred ecCCCCCCCCchhhcc-----ccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005152 523 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 597 (711)
Q Consensus 523 M~SpVDf~ks~~~Wqq-----dKw~G~F~VkWi~VkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 597 (711)
|+|+|...++-..|.+ ..|++.|+||||+++.|||.++.||+|+|||||||++|||||||++++|+|||.|+...
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~ 211 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD 211 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence 9999998888777865 57999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 005152 598 PS 599 (711)
Q Consensus 598 ~~ 599 (711)
++
T Consensus 212 p~ 213 (441)
T KOG1902|consen 212 PS 213 (441)
T ss_pred cc
Confidence 54
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.06 E-value=0.21 Score=48.39 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=74.5
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCCCCC
Q 005152 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK 531 (711)
Q Consensus 458 RFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN------~SGqFqG~AeM~SpVDf~k 531 (711)
+|+|+=+ |+||+....+.|||-.....-.-|.+ . ..+..+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 99999999999999996442222221 1 235788888887 5789999999998752222
Q ss_pred Cchhhcc------ccccCccceeEEEeec--CCCccccccccCCCCC-----Cce-eecCCCcccchHHHHHHH
Q 005152 532 NVEYWQQ------DKWTGCFPVKWHIVKD--VPNSLLKHITLENNEN-----KPV-TNSRDTQEIKLEQGLKLI 591 (711)
Q Consensus 532 s~~~Wqq------dKw~G~F~VkWi~VkD--VPf~~lrHI~N~nNeN-----KPV-t~SRDgQEIe~e~G~qLL 591 (711)
+ .+|.+ +.+--..+|+++.+.+ ||.+.|.- .+++-++ ..+ ..+| .||..+....|+
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~-~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIP-KLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHh-hhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 2 23321 2222457799988877 77665510 1222111 222 4555 777776665554
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=82.17 E-value=3 Score=39.26 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=63.5
Q ss_pred eEEEEecC----ChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCCCC---
Q 005152 458 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDF--- 529 (711)
Q Consensus 458 RFFIIKS~----nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~SpVDf--- 529 (711)
+|+|+|+. +-+++ .-.+..+|.-..+...+- .+++.+ .+.-+||+.-+ ..+.|.|+++.++..-.
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 68999998 76666 444555555433322222 445442 34677778777 68999999999986421
Q ss_pred --CCCchhhcccc--ccCccceeEEEeec--CCCccccccccCCCCCCceeec-CCCcccchHHHHHHHHH
Q 005152 530 --NKNVEYWQQDK--WTGCFPVKWHIVKD--VPNSLLKHITLENNENKPVTNS-RDTQEIKLEQGLKLIKI 593 (711)
Q Consensus 530 --~ks~~~WqqdK--w~G~F~VkWi~VkD--VPf~~lrHI~N~nNeNKPVt~S-RDgQEIe~e~G~qLLkI 593 (711)
+....++.... .....+|+++.+-+ |+...||.. ..+.+-.-|++. .--.+|..+.-..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 11112222111 22356788886544 444555432 111111122222 23456666666666653
No 6
>PRK02268 hypothetical protein; Provisional
Probab=49.98 E-value=96 Score=30.69 Aligned_cols=119 Identities=12% Similarity=0.151 Sum_probs=69.2
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhH-HHHHHHHHHHhhcCCCCEEEEEEeC-------CCCCeeEEEEecCCCCC
Q 005152 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNK-KLDAAYQEAQQKSRSCPVFLLFSVN-------TSGQFVGLAEMAGPVDF 529 (711)
Q Consensus 458 RFFIIKS~nEdNIhkSIKyGVWaSTp~nnk-KLn~AFrea~~k~~~~pVfLfFSVN-------~SGqFqG~AeM~SpVDf 529 (711)
+|.| =.-|+||+.+.++.|+|-.. |+.+ -|.+ - ....-+|++|=. .=+.|.+++++++.--+
T Consensus 3 ~yWI-~v~s~~hv~~g~~~gf~qv~-hgK~apl~R----m----kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Y 72 (141)
T PRK02268 3 RYWI-GVVSAEHVRRGVEGGFMQVC-HGKAAPLRR----M----KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPY 72 (141)
T ss_pred ceEE-EEccHHHHHHHHhCCEEEeC-CCccchhhc----C----CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceE
Confidence 4553 35679999999999999774 4333 2221 1 134677777722 34689999999986222
Q ss_pred CCCchhhccccccC----ccceeEEEeecCCCccc----cccccCCCCCCceeecCCCcccchHHHHHHHHHHh
Q 005152 530 NKNVEYWQQDKWTG----CFPVKWHIVKDVPNSLL----KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFK 595 (711)
Q Consensus 530 ~ks~~~WqqdKw~G----~F~VkWi~VkDVPf~~l----rHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF~ 595 (711)
+...-.+ -++|+|+.+.++|++-| ++|++.-+=.... -.---||.-+-.+.|.+.+.
T Consensus 73 -------q~~m~~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f--r~g~~eI~e~Df~~I~~am~ 137 (141)
T PRK02268 73 -------QVEMAPGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF--RFGHFEISKHDFETIASAMT 137 (141)
T ss_pred -------ecccCCCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh--cCCcEecCHHHHHHHHHHhc
Confidence 2111112 35699999999998744 4444432222222 11235666666655555443
No 7
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=42.33 E-value=24 Score=28.14 Aligned_cols=28 Identities=46% Similarity=0.928 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCC
Q 005152 129 YGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQP 167 (711)
Q Consensus 129 ygy~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp~yyq~ 167 (711)
|+|.-|||| -|+|-- -|| +|.|| |+|||
T Consensus 14 ~~~grygpy----qp~peq----~ly-pqpyq--p~yqq 41 (42)
T PF03875_consen 14 FFYGRYGPY----QPFPEQ----PLY-PQPYQ--PPYQQ 41 (42)
T ss_pred hcccccCCc----CCCCCC----cCC-CCCCC--Ccccc
Confidence 344446777 555542 266 66555 44553
No 8
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=30.25 E-value=1e+02 Score=30.33 Aligned_cols=116 Identities=16% Similarity=0.277 Sum_probs=76.5
Q ss_pred CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhcccc----
Q 005152 465 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK---- 540 (711)
Q Consensus 465 ~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~~~WqqdK---- 540 (711)
+|.+-+....++.+.-....... |-+ ....+-++|||= -..++..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~~-----~V~--~I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~ 78 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHKD-----FVK--KIKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGES 78 (130)
T ss_pred ECCCCHHHHHhcccccCChhhhh-----HHh--eeCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCc
Confidence 34445666777777777654222 111 112345677642 25789999999999877776666677633
Q ss_pred -c--cCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHH
Q 005152 541 -W--TGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 594 (711)
Q Consensus 541 -w--~G~F~VkWi~VkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF 594 (711)
+ .=.|.|.| .+..||-+.++|++-+|-.++ .+=-.||...+.+.||.||
T Consensus 79 ~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~~----~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 79 PFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYDK----NKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ccceEEEEEEee-eeecCCHHHHHHHHHHhCCCC----CcccCcCCHHHHHHHHHhC
Confidence 2 22477777 566899999999985542221 2446899999999999987
No 9
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=29.85 E-value=1.5e+03 Score=30.23 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCCCc
Q 005152 133 PYPPYSPATSPVPT 146 (711)
Q Consensus 133 pYg~Ysp~~sP~p~ 146 (711)
||.-.+-++||.+.
T Consensus 1432 p~~~~~~~~sp~~s 1445 (1605)
T KOG0260|consen 1432 PWSNMSSPASPGSS 1445 (1605)
T ss_pred cccccCCCCCCCCC
Confidence 33333333344443
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=13.82 E-value=1.5e+03 Score=29.49 Aligned_cols=131 Identities=22% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCccCC-CCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCCC
Q 005152 258 NLDGMRSPIPWLDGPVISD-ARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPN 336 (711)
Q Consensus 258 ~~dg~~~~~~w~d~~~~s~-~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 336 (711)
++....-....+|.-.|+| +++.+ ..|.-+-+.+.+...-.+-.+.+|-|.+.||. +..|-+
T Consensus 1143 ~inLmig~~l~~~StrygDGp~PPK---------------maryDnG~~~n~SgyRRGgssysgGGYGggys--~gGygs 1205 (1282)
T KOG0921|consen 1143 DINLMIGDSLLTDSTRYGDGPGPPK---------------MARYDNGPSNNNSGYRRGGSSYSGGGYGGGYS--GGGYGS 1205 (1282)
T ss_pred cccceeccCcccccccccCCCCCcc---------------cccccCCCccCccccccCCCCCCCCCcCCCCC--CCCcCC
Q ss_pred ccccCCCCccccCC-------CCCCCCCCCCCCCccccc-cCCccccCCCCCCccCCCCCCccccccccCCCCCCCC
Q 005152 337 KLYGQYGNTFRSGV-------GFGSNGYDLRTNGRGWLS-VDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGA 405 (711)
Q Consensus 337 ~~y~~~g~~~~~~~-------~~g~~~~~~~~~~r~w~~-~~~k~~~~~~~~~~~~~~~~~~d~~~e~nrgpr~~~~ 405 (711)
+.|+..++.++.+. .+|-+.-+.|.|+++-.. ...-||.+|-...++|.+-..--++.---+|=+++..
T Consensus 1206 GGYGgsa~~~~~~~Gagvg~GyrGvsrgGfrnnggGdyrnpgggyrgsGGfgrgggrgagggGgfg~G~~Gg~~~n~ 1282 (1282)
T KOG0921|consen 1206 GGYGGSAPSARANYGAGVGNGYRGVSRGGFRNNGGGDYRNPGGGYRGSGGFGRGGGRGAGGGGGFGGGGRGGNASNW 1282 (1282)
T ss_pred CCCCCCCCCCCCCccccccCCCccccCCccccCCCCCCCCCCCCccCCCCcCCCCCCCCCCCCCCCCCCccccccCC
Done!