Query 005152
Match_columns 711
No_of_seqs 198 out of 361
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 3.4E-54 1.2E-58 418.4 9.2 166 437-617 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 1.7E-52 5.8E-57 392.7 10.8 138 453-597 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.2 0.0091 3.1E-07 56.0 7.4 125 458-594 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 94.9 0.049 1.7E-06 51.2 7.0 124 457-593 4-147 (147)
5 2eve_A Hypothetical protein ps 63.0 13 0.00045 35.9 6.4 131 458-597 2-152 (157)
6 3eop_A Thymocyte nuclear prote 36.4 61 0.0021 31.8 6.4 131 458-595 2-168 (176)
7 2ar1_A Hypothetical protein; s 22.8 2.3E+02 0.008 27.7 7.8 129 457-594 19-166 (172)
8 2gbs_A Hypothetical protein RP 13.7 2E+02 0.0067 27.4 4.7 127 458-597 2-138 (145)
9 1zce_A Hypothetical protein AT 12.1 2.2E+02 0.0075 27.4 4.6 129 458-596 3-139 (155)
10 2jvf_A De novo protein M7; tet 11.5 37 0.0013 29.5 -0.8 15 572-586 9-23 (96)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.4e-54 Score=418.39 Aligned_cols=166 Identities=31% Similarity=0.531 Sum_probs=155.9
Q ss_pred cCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 005152 437 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516 (711)
Q Consensus 437 ~~~~~~~qyN~~~f~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGq 516 (711)
...+++++||+.++.. +++|||||||++++|||+||+||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 3466789999988774 899999999999999999999999999999999999999997 48999999999999
Q ss_pred eeEEEEecCCCCCCCCchhhc------cccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 005152 517 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 590 (711)
Q Consensus 517 FqG~AeM~SpVDf~ks~~~Wq------qdKw~G~F~VkWi~VkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qL 590 (711)
|||||||+|+++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888996 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccchhhhHHHHHHH
Q 005152 591 IKIFKDHPSKTCILDDFGFYETRQKTI 617 (711)
Q Consensus 591 LkIF~~~~~~tSIlDDF~~Ye~rek~~ 617 (711)
|+||+.+ ++|++|+.|+|..
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999886 5799999998864
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-52 Score=392.65 Aligned_cols=138 Identities=28% Similarity=0.551 Sum_probs=132.5
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 005152 453 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 532 (711)
Q Consensus 453 ~y~~ARFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks 532 (711)
...++|||||||+++||||+||+||||+||++||++|++||+++ .+||||||||+||+|||||||++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 35789999999999999999999999999999999999999998 399999999999999999999999999 56
Q ss_pred chhhccccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005152 533 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 597 (711)
Q Consensus 533 ~~~WqqdKw~G~F~VkWi~VkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 597 (711)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999864
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.23 E-value=0.0091 Score=56.04 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=81.4
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCC
Q 005152 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 529 (711)
Q Consensus 458 RFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~S--------GqFqG~AeM~SpVDf 529 (711)
+|.|+|| +.|++...++.|+|-. .+.-+..-++ - ..+..+||++-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899998 8999999999999977 5554432221 1 23478888887765 799999999986522
Q ss_pred CCCchhhccccc-----cCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHH
Q 005152 530 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 594 (711)
Q Consensus 530 ~ks~~~WqqdKw-----~G~F~VkWi~VkDVPf~~lrHI~N~nNeN-----KPVt~SRDgQEIe~e~G~qLLkIF 594 (711)
+.+ .+|-..+| --...|+++.+..|+++.++. .+++-.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 123568888889998877664 3333222 112 02337999999999998764
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.90 E-value=0.049 Score=51.20 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=77.5
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEe-----C-CCCCeeEEEEecCCCC--
Q 005152 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSV-----N-TSGQFVGLAEMAGPVD-- 528 (711)
Q Consensus 457 ARFFIIKS~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSV-----N-~SGqFqG~AeM~SpVD-- 528 (711)
.+|.|+|+. ++++...++.|+|-. .+.-+.+-+ .- ..+..+||+.. | .-..|.|++++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999986 677999999999966 444333222 11 23467777722 2 3458999999998542
Q ss_pred ---CCCCchhhccc-cccCccceeEEEe--ecCCCcccc----ccccC--CCCCCceeecCCCcccchHHHHHHHHH
Q 005152 529 ---FNKNVEYWQQD-KWTGCFPVKWHIV--KDVPNSLLK----HITLE--NNENKPVTNSRDTQEIKLEQGLKLIKI 593 (711)
Q Consensus 529 ---f~ks~~~Wqqd-Kw~G~F~VkWi~V--kDVPf~~lr----HI~N~--nNeNKPVt~SRDgQEIe~e~G~qLLkI 593 (711)
|+....|...+ +| -..+|+|+.. +.||...|+ +|++. |.+ .-|..+ -++|..+.-..||++
T Consensus 75 ~t~~dp~~~y~~~~~~w-~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFP-YRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCC-EEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCc-eEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 22222222121 22 2688999987 888887777 22222 222 224555 899999998888853
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=63.05 E-value=13 Score=35.87 Aligned_cols=131 Identities=14% Similarity=0.323 Sum_probs=77.3
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC-----C
Q 005152 458 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP-----V 527 (711)
Q Consensus 458 RFFIIKS----~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~Sp-----V 527 (711)
+|.++|| |+.||+.. -+...|.-..+-..| .-.|+. ..+...||+.-| ......|+||+++. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr--N~mr~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR--NFLRTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH--HHHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH--HHHHhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67888887 555789755432211 111222 123566667666 88999999999984 3
Q ss_pred CCCCCchhhcc------ccccCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHHhcC
Q 005152 528 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKDH 597 (711)
Q Consensus 528 Df~ks~~~Wqq------dKw~G~F~VkWi~V--kDVPf~~lrHI~N~nNeNKPVt~-SR-DgQEIe~e~G~qLLkIF~~~ 597 (711)
.|+....||.. -+|. .+.|+-+.. +-|+..++|... ++.+-.-|+. +| --|-|..++-..||+|=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhhh
Confidence 45666677732 2443 445555443 455555555432 3334444444 23 45788888888898885544
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=36.44 E-value=61 Score=31.84 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=79.2
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEE
Q 005152 458 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 522 (711)
Q Consensus 458 RFFIIKS-------------~nEdNIhkS-IKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~Ae 522 (711)
+|.++|| |+.||+... .+...|.=..+-..|-. .|+. . .+...||+--| +--...|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k-~GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---K-LGEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---C-TTCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc---C-CCCEEEEEecCCCCCeEEEEEE
Confidence 5778886 677888765 34567886644322211 1222 1 23455566555 7889999999
Q ss_pred ecCCC-----CCCCCchhhcc------ccccCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 005152 523 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 581 (711)
Q Consensus 523 M~SpV-----Df~ks~~~Wqq------dKw~G~F~VkWi~V--kDVPf~~lrHI~-------N~nNeNKPVt~SR-DgQE 581 (711)
++... .|+....||.. -||. .+.|+-+.. +-|+..+||... -++.+-.-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 36666677742 2564 466666654 456666777653 1444444555555 4577
Q ss_pred cchHHHHHHHHHHh
Q 005152 582 IKLEQGLKLIKIFK 595 (711)
Q Consensus 582 Ie~e~G~qLLkIF~ 595 (711)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77888888887754
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=22.80 E-value=2.3e+02 Score=27.65 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=68.8
Q ss_pred ceEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCC----
Q 005152 457 AKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV---- 527 (711)
Q Consensus 457 ARFFIIKS----~nEdNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~SpV---- 527 (711)
-+|.++|| |+.||+.. -....|.-..+-..+- -.+.. ..+...||+.-| .-..+.|+|++++..
T Consensus 19 M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M----k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~ 91 (172)
T 2ar1_A 19 IHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM----SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDF 91 (172)
T ss_dssp CCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECG
T ss_pred cceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeeeccCCc
Confidence 46999997 67888887 4446797554432211 11222 123455666555 889999999999843
Q ss_pred -CCCCCchhhcc------ccccCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHH
Q 005152 528 -DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIF 594 (711)
Q Consensus 528 -Df~ks~~~Wqq------dKw~G~F~VkWi~V--kDVPf~~lrHI~N~nNeNKPVt~SR-DgQEIe~e~G~qLLkIF 594 (711)
.|+....||.. -+|. .+.|+-+.. +-|+...||... ++.+-.-|+.+| --+-|..++-..||+|-
T Consensus 92 t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 92 TALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp GGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred ccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 35556667753 1342 344444432 344444444321 122222223333 23455555555555554
No 8
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=13.67 E-value=2e+02 Score=27.39 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=69.0
Q ss_pred eEEEEec----CChhHHHHHhh-cCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCC--CCC
Q 005152 458 KFFVIKS----YSEDDVHKSIK-YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPV--DFN 530 (711)
Q Consensus 458 RFFIIKS----~nEdNIhkSIK-yGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpV--Df~ 530 (711)
+|.++|| |+.||+...-. .-.|.-..+-..+ .-.++. ..+...||+.-|.-..+.|+||+++.. |..
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqAr--n~mr~M----k~GD~~ffYHS~~~~gIvGi~eVv~e~ypD~t 75 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAK--LHMVAM----RRGDRAFYYHSNEGKEIVGIAEIIREAYPDPT 75 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHH--HHHHHC----CTTCEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHH--HHHHhc----CCCCEEEEEEeCCCCceEEEEEEEEeccCCCC
Confidence 4888887 56677776332 2459754432211 112222 123566777767899999999999864 443
Q ss_pred CCchhhccccccCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHHhcC
Q 005152 531 KNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIFKDH 597 (711)
Q Consensus 531 ks~~~WqqdKw~G~F~VkWi~V--kDVPf~~lrHI~N~nNeNKPVt~SR-DgQEIe~e~G~qLLkIF~~~ 597 (711)
.. ..+|. .+.|+-+.. +.|+...+|.. -++.+-.-|+.+| --|-|..++-..||++-...
T Consensus 76 ~~-----~prw~-~VdV~~v~~~~~pvtL~elK~~-~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~~ 138 (145)
T 2gbs_A 76 DA-----SGKFV-CVDIKADKPLKTPVTLAAVKAE-PRLADMALMKYSRLSVQPVTAEEWKLVCKMGGLL 138 (145)
T ss_dssp CT-----TSCSE-EEEEEEEEEEEEEEEHHHHHHC-TTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTCC
T ss_pred CC-----CCCEE-EEEEEEceecCCcccHHHHhcC-cCcccCeeeeccCCCceeeCHHHHHHHHHhhccc
Confidence 22 22442 445555432 34444444432 1222222333333 34667777777788775543
No 9
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=12.11 E-value=2.2e+02 Score=27.37 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=70.4
Q ss_pred eEEEEec----CChhHHHHHhh-cCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 005152 458 KFFVIKS----YSEDDVHKSIK-YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 532 (711)
Q Consensus 458 RFFIIKS----~nEdNIhkSIK-yGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks 532 (711)
+|.++|| |+.||+...-. .-.|.-..+-..| .-.++. ..+.-.||+--|.-..+.|+||+++....+.+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~WdGVRNyqAr--N~mr~M----k~GD~~fFYHS~~~~gIvGi~eVv~e~ypD~t 76 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQAR--NNMRAM----KIGDKGFFYHSNEGLDVVGIVEVCALSHPDST 76 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHH--HHHHTC----CTTCEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceecCcccHHHH--HHHHhc----cCCCEEEEEEeCCCCceEEEEEEeeeccCCCC
Confidence 5888997 56688877443 2569754432211 111222 12456667766788999999999986433222
Q ss_pred chhhccccccCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHHhc
Q 005152 533 VEYWQQDKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIFKD 596 (711)
Q Consensus 533 ~~~WqqdKw~G~F~VkWi~V--kDVPf~~lrHI~N~nNeNKPVt~SR-DgQEIe~e~G~qLLkIF~~ 596 (711)
. +..-+| ..+.|+-+.. +-|+...+|.. -++.+-.-|+.+| --|-|..++-..||++-..
T Consensus 77 ~--~d~Prw-~~VdV~~v~~~~~pvtL~eLK~~-~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~~ 139 (155)
T 1zce_A 77 A--EGDLKW-DCVDIRAVCDMPQPVSLKDVKAN-PKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGL 139 (155)
T ss_dssp S--TTCSSC-EEEEEEEEEEEEEEEEHHHHHHC-GGGTTCHHHHCSSCSEEEECHHHHHHHHHHTTC
T ss_pred c--CCCCCe-EEEEEEEccccCCcccHHHHhcC-CCcccCeeeeccCCCceeeCHHHHHHHHHhhCC
Confidence 1 111144 2455666532 44554444432 1222333334444 3466777777778777643
No 10
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=11.55 E-value=37 Score=29.46 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.1
Q ss_pred ceeecCCCcccchHH
Q 005152 572 PVTNSRDTQEIKLEQ 586 (711)
Q Consensus 572 PVt~SRDgQEIe~e~ 586 (711)
-|++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEeeCCeEEEEEE
Confidence 578899999998653
Done!