BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005153
(711 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXH2|NUP85_ARATH Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85
PE=2 SV=1
Length = 716
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/712 (69%), Positives = 593/712 (83%), Gaps = 2/712 (0%)
Query: 1 MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPS--EDS 58
MS E+ GG +V +S + K PV+YPL +GLK P+ RL ISW GN+LRVTV R P +D
Sbjct: 4 MSSESGGGELVLFSTKEKTPVLYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPELRDDD 63
Query: 59 ENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFD 118
+ EVGGK V VRL G DGEISD QWRRIAYGSVSPFALLQSR+NS +SLSK+ ++S +
Sbjct: 64 DGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMSSSLYQ 123
Query: 119 AEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKL 178
WWEYV+EYS+DI SLL N S LIEDP+ V+K EP++LKAAWELME FYADK
Sbjct: 124 TAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFYADKT 183
Query: 179 SQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAV 238
+WLPERLVDWL++YD L SS+ T++SKL DFQK+LV LQ IED+P+YWEVM+SAL+V
Sbjct: 184 CLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMASALSV 243
Query: 239 GWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAK 298
GWL+IVVKLL LHGSYQLDQLG+RETENGLVEAVAVLISKMPRMRP+LE GK GEC AK
Sbjct: 244 GWLEIVVKLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMPRMRPQLEDGKFGECSAAK 303
Query: 299 PDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELY 358
PDFMK E+W++QI KLECS FW+QCAH QT+EGLRNML+IM+GN + L TC+WMEL+
Sbjct: 304 PDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIMIGNADCLRAATCNWMELF 363
Query: 359 IAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
++H LY+RPFT GL+ M+ LAQKC+Q KP+ SH+L+ LLIGILGEN EVVLAECSK FG
Sbjct: 364 VSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAECSKEFG 423
Query: 419 PWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYL 478
WMV HA+E+LTAGS + + L+HEE+ LGGI+MEELHRLVYAQVLSSH LTWQIAPIYL
Sbjct: 424 SWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVYAQVLSSHALTWQIAPIYL 483
Query: 479 TSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKG 538
SC KQG+GLLE+L Y+QPV NQ+L+K+LEICRLYEL +VS+ +MKI+G+++WKHG+KG
Sbjct: 484 ASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKG 543
Query: 539 SGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHN 598
SG++WLQQARDE L+ IAQQ+FDSVG+S+SDE+ +QWEGL++LLGSE + +GGL+FLH
Sbjct: 544 SGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHK 603
Query: 599 YRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLL 658
YRDFK+SL + DGKT DAA +AVE L+SLMK+P TPQRFWLPLLHDSLKLLNW ER LL
Sbjct: 604 YRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPERSLL 663
Query: 659 NVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEE 710
NV QTNL+LNKLQELSIARLRP FIE++L A+ SVRLALATNLGR LEE
Sbjct: 664 NVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALATNLGRAFLEE 715
>sp|Q8R480|NUP85_MOUSE Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1
SV=1
Length = 656
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/419 (27%), Positives = 181/419 (43%), Gaps = 39/419 (9%)
Query: 305 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 360
W+ WR + + L+ +TF L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTF-------AANPRLESLCKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 361 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 419 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 477
W V H ++L L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLLD------HCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 478 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 537
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVKSICKILAMKAVRNNRL 483
Query: 538 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 597
GS + W +A+D A A + D R + LI LGS + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGSAMMLSDRLTFLG 539
Query: 598 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 657
YR+F + + R G A L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHRLYGEKRFG-------DAASLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 658 LNVLQTNLLLNKLQELSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 710
+ QT L+ L++L+ R PD + D+ + +RLALA NL R + E
Sbjct: 592 FSAEQTYELMRCLEDLASGRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIRE 650
>sp|Q9BW27|NUP85_HUMAN Nuclear pore complex protein Nup85 OS=Homo sapiens GN=NUP85 PE=1
SV=1
Length = 656
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 183/423 (43%), Gaps = 47/423 (11%)
Query: 305 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 360
W+ W + + L+ STF T L ++L+IMLG+ L L +W +
Sbjct: 258 WQHWHEECERYLQDSTF-------ATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 361 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALS 369
Query: 419 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 477
W V H ++L L + + G +M E L YA L +HP WQ+ Y
Sbjct: 370 NWWFVAHLTDLLDHCK------LLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDY 423
Query: 478 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 537
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRL 483
Query: 538 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 597
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 598 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 657
YR+F + + + DAA L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHR---MYGEKRFADAA----SLLLSLMTSRIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 658 LNVLQTNLLLNKLQELSIAR----------LRPDFIEADLPPHALSSVRLALATNLGRTT 707
+ QT L+ L++L+ R L+ D IE + +RL+LA NL R
Sbjct: 592 FSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETT----KVEMLRLSLARNLARAI 647
Query: 708 LEE 710
+ E
Sbjct: 648 IRE 650
>sp|Q6DBY0|NUP85_DANRE Nuclear pore complex protein Nup85 OS=Danio rerio GN=nup85 PE=2
SV=1
Length = 649
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/494 (24%), Positives = 210/494 (42%), Gaps = 50/494 (10%)
Query: 226 PKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPE 285
P YW+V++S + G +D ++L S +++ + + + + L+ MP P
Sbjct: 192 PAYWDVVTSLVLQGRMDEARQILSKQASLRMES-------SSVFKRMDTLLQTMPIFNP- 243
Query: 286 LEAGKLGECFKAKPDFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNT 344
AG + +F W W + + L+ TF + L + +I+LG+
Sbjct: 244 --AGA-----QTLTEFDVKWRHWHEECDRCLQDHTF-------ASSAELETLCKILLGDE 289
Query: 345 NNLC---TLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLI 399
+ + L W ++ L+ P T+ ++ AQ + L P A L +L+
Sbjct: 290 DVILEQKDLMSTWYHFLVSRLLFTHP-TIKPPDLHYYAQSSMNMFLGPRATPEPLDIILL 348
Query: 400 GILGENIEVVLAECSKGFGPW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRL 458
++ V+ +CS W V H ++L LH G ++ E L
Sbjct: 349 SAFEFDLHQVIKDCSIALNNWWFVAHLTDLLDHCKLLQSHNLH------FGSNLREFLVL 402
Query: 459 VYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDS 518
YA L +H WQ+A YL C + G LE+ + + P+D + K L IC ++
Sbjct: 403 EYASGLFTHHSLWQLAVDYLDHCPEFGRVYLELQIERVPLDTERKANKVLRICEDRQMSE 462
Query: 519 VSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEG 578
+I KI ++ + GS + W +A+D A I+++ S +
Sbjct: 463 QVRSICKIMAKRALRNNRLGSALSWSIRAKDAALATLISERFLQDYSNKGSFTDL----D 518
Query: 579 LIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRF 638
++ LG + L FL YR+F + + + +DAA+ L+SLM P+
Sbjct: 519 VLDNLGPAMLLSDRLTFLGKYREFHR---LYGENRFSDAAKL----LLSLMMAKIAPRSL 571
Query: 639 WLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFI--EADLPPHALSSVR 696
W+ LL D+L LL EE + V QT L++ L+EL+ + + E DL +R
Sbjct: 572 WMTLLTDALPLLEQEE-VIFTVDQTYELMSCLEELNSGTKDSNQMEQEEDLESTKTELLR 630
Query: 697 LALATNLGRTTLEE 710
+ALA NL ++E
Sbjct: 631 VALARNLATAIVKE 644
>sp|Q4QQS8|NUP85_RAT Nuclear pore complex protein Nup85 OS=Rattus norvegicus GN=Nup85
PE=2 SV=1
Length = 656
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 180/419 (42%), Gaps = 39/419 (9%)
Query: 305 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 360
W+ WR + + L+ +TF L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTF-------AANPHLESLCKIMLGDEATLLEQKELMSNWYHFLVT 310
Query: 361 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPTDLHLYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 419 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 477
W V H ++L L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLLDHCR------LLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 478 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 537
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVGSICKILAMKAVRNNRL 483
Query: 538 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 597
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 598 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 657
YR+F + + R G A L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHRLYGEKRFG-------DAASLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 658 LNVLQTNLLLNKLQELSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 710
+ QT L+ L++L+ R PD + D+ + +RLALA NL R + E
Sbjct: 592 FSAEQTYELMRCLEDLASRRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIRE 650
>sp|Q3ZC98|NUP85_BOVIN Nuclear pore complex protein Nup85 OS=Bos taurus GN=NUP85 PE=2 SV=1
Length = 656
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 158/704 (22%), Positives = 278/704 (39%), Gaps = 89/704 (12%)
Query: 28 GLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIA 87
G+ ++ W G L E SE G + + +D ++ R++
Sbjct: 15 GVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVAGCPFIHII--RKDIDVYSKILRKLF 72
Query: 88 YGSVSPFALLQ------SRKNSFASLSKISSTTSPFDAEWWEYVLEYS-KDISSLLGNQT 140
S F LQ + K+ A L ++S E + +++ D S +G Q
Sbjct: 73 NESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQFAVADKDSAIGRQF 132
Query: 141 STTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSS 200
S+ S++ S ++ W L E + + L L+DW+
Sbjct: 133 SSQVSIL-------------SAVELIWNLCEILFIEVAPAGPLLLYLLDWV--------- 170
Query: 201 TQETVHSKLVD-FQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQL 259
+H VD D++ + +W ++++ + G LD ++L +
Sbjct: 171 ---RLHVCEVDSLSADVLGSENPSKHESFWNLVTTLVLQGRLDEARQMLS-------KEA 220
Query: 260 GNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAK-LECS 318
+ T G+ + L+ MP + P G + + W+ W + + L+
Sbjct: 221 DSNPTSAGMCRVLGDLMRTMPILSP----GNT----QTLTELELRWQHWHEECERHLQDG 272
Query: 319 TFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIAHFLYIRPFTVGLESM 375
TF + L ++ +++LG+ L L +W + LY +P TV +
Sbjct: 273 TF-------ASNPHLESLCKVLLGDDAALLEHKELLSNWYHFLVTRLLYSQP-TVKPMDL 324
Query: 376 YGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFGPW-MVTHAIEVLTAG 432
+ AQ + L ++ L +L+ +I V+ ECS W V H ++L
Sbjct: 325 HLYAQSSLDLFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC 384
Query: 433 SHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEML 492
L + + G +M E L YA L +H WQ+ Y C + G LE+
Sbjct: 385 K------LLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDYCDHCPELGRVSLELH 438
Query: 493 LYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEAR 552
+ + P+ Q LK L +C ++ +I K+ M ++ + GS + W +A+D A
Sbjct: 439 IERIPLTTEQKALKVLRVCEQRQMTEQVRSICKVLAMKAVRNNRLGSALSWSIRAKDAA- 497
Query: 553 LNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDG 612
A + D R + LI LG + L FL YR+F + +
Sbjct: 498 ---FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHR---LYGEK 551
Query: 613 KTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQE 672
DAA L+SLM + P+ FW+ LL D+L LL +++ + + QT LL L++
Sbjct: 552 CFVDAA----SLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVIFSAEQTYELLRCLED 606
Query: 673 LSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 710
L+ R PD + D+ + +RLALA NL R+ ++E
Sbjct: 607 LTSGRPLCGEPDAQQLQDDDIETTKVEILRLALARNLARSIIKE 650
>sp|Q6DK84|NUP85_XENTR Nuclear pore complex protein Nup85 OS=Xenopus tropicalis GN=nup85
PE=2 SV=1
Length = 653
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 160/702 (22%), Positives = 280/702 (39%), Gaps = 87/702 (12%)
Query: 28 GLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIA 87
GL +G SW G+ L ++ + +E + + L D +I R++
Sbjct: 15 GLGQQNRHIGFSWGPGDLL---LYETLYQKQGSETAARCPFMYLVRSDEDIYSPVLRKLF 71
Query: 88 YGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLI 147
S S F LQ A S+ + +++ S++ S+L +L
Sbjct: 72 NESHSIFVGLQKSAEENAGKSRKAQ------------LVQVSRNYRSVLRACMEEMHALS 119
Query: 148 E---DPKEVLKKDPEPSNLKA---AWELMESFYADKLSQAWLPERLVDWLADYDSLFSST 201
E +P + K + S L A +W L E + + L L+DW+
Sbjct: 120 ESTREPSQNTKYISQISILSAMELSWNLCEILFIESAPAGPLLILLLDWV---------- 169
Query: 202 QETVHSKLVD-FQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLG 260
+H VD +D++ + + K+W+ ++ + G ++ +LL S +
Sbjct: 170 --RLHVCEVDNIVQDVLRSERPTEHEKFWDGVTGYVLQGRMNEARQLLAKEASSSV---- 223
Query: 261 NRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAK-LECST 319
+ + + L+ KMP + AG + +F W+ WR + + L+ T
Sbjct: 224 ---SARSMCRVLDDLLKKMPMLNT---AGT-----QTLTEFELKWQHWREECERHLQNGT 272
Query: 320 FWIQCAHRQTQEGLRNMLQIMLGNTNNLC---TLTCHWMELYIAHFLYIRPFTVGLESMY 376
F + + + ++++G+ + L W ++ L+ P TV ++
Sbjct: 273 F-------SSNPHMEVVCRVLVGDEEVILEKRDLMTTWYHFLVSRLLFKHP-TVKPTELH 324
Query: 377 GLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECS-KGFGPWMVTHAIEVLTAGS 433
AQ + L ++ L +L+ +I V+ E S W V H ++L
Sbjct: 325 FYAQSSLDMFLAGNSSPEPLDNILLAAFEFDIHQVIKEFSIVSSNWWFVAHLTDLLDHCQ 384
Query: 434 HQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLL 493
L + + G +M E L YA L SH WQ+ Y C G LE+ +
Sbjct: 385 ------LFQAHNLYFGANMREFLLLDYASGLFSHHSLWQLGVDYFDYCPNLGHVYLELHM 438
Query: 494 YKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARL 553
+ P++ + LK L IC ++ +I K M + +G+ GS + W +A+D A
Sbjct: 439 ERVPLNTEKKALKALRICEKRQMTEQVRSICKTMAMQSLCNGRLGSALSWSIRAKDAAFA 498
Query: 554 NRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGK 613
I+ + NF + LI LGS + L FL YR+F + Q
Sbjct: 499 TLISDRFLKEYSER---GNFTDLD-LIDNLGSAMLLSDRLTFLGKYREFHRMYSQ----- 549
Query: 614 TTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQEL 673
+ +A L+SLM P FWL LL D+L LL +++ + + QT L+ L++
Sbjct: 550 --EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE-QKQVIFSAEQTYELMRCLEDR 606
Query: 674 SIARL---RPDFIEA--DLPPHALSSVRLALATNLGRTTLEE 710
A+L PD I+ + + +RLALA NL R + E
Sbjct: 607 MAAKLDSTSPDEIQKQDSVDSTKIEMLRLALARNLARAIVTE 648
>sp|Q68FJ0|NUP85_XENLA Nuclear pore complex protein Nup85 OS=Xenopus laevis GN=nup85 PE=2
SV=1
Length = 653
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 157/701 (22%), Positives = 274/701 (39%), Gaps = 85/701 (12%)
Query: 28 GLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIA 87
GL +G SW G+ L Q +SE + + L D +I R++
Sbjct: 15 GLGQQNRHIGFSWGPGDLLLYETLYQKQGNSET--AARCPFMYLVRSDEDIYSPVLRKLF 72
Query: 88 YGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLI 147
S S F LQ + S+ + +++ S++ S+L +L
Sbjct: 73 NESHSIFVGLQKSAEEASGKSRKAQ------------LVQVSRNYRSVLRACMEEMHTLS 120
Query: 148 EDPKEVLKKDPEP----SNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQE 203
E +E +K S ++ +W L E + + L L++W+
Sbjct: 121 ESTRETAQKYISQISILSAMELSWNLCEILFIESAPAGPLLILLLEWV------------ 168
Query: 204 TVHSKLVD-FQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNR 262
+H VD +D++ + + K+W+ ++ + G ++ +LL S
Sbjct: 169 RLHVCEVDNIVQDVLRSEKPTEHEKFWDGVTGYVLQGRMNEARQLLAKEAS-------TS 221
Query: 263 ETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAK-LECSTFW 321
+ + + L+ KMP + G + +F W+ WR + + L+ TF
Sbjct: 222 ASARSMCRVLDDLLKKMPMLHT---GGT-----QTLTEFELKWQHWREECERHLQNGTF- 272
Query: 322 IQCAHRQTQEGLRNMLQIMLGNTNNLC---TLTCHWMELYIAHFLYIRPFTVGLESMYGL 378
+ + + +++LG+ L L W ++ L+ P TV ++
Sbjct: 273 ------SSNVHMEAVCRVLLGDEEVLLEKRDLMTTWYHFLVSRLLFKHP-TVKPTELHFY 325
Query: 379 AQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECS-KGFGPWMVTHAIEVLTAGSHQ 435
AQ + L + L +L+ +I V+ E S W V H ++L
Sbjct: 326 AQSSLDMFLAGDSCPEPLDNILLAAFEFDIHQVIKEFSIVSSNWWFVAHLTDLLDHCQ-- 383
Query: 436 ADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYK 495
L + + G +M E L YA L SH WQ+ Y C G L++ + +
Sbjct: 384 ----LFQAHNLYFGANMREFLLLDYASGLFSHHSLWQLGVDYFDYCPNLGREYLKLHMER 439
Query: 496 QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR 555
P+ + LK L IC ++ +I K M + + + GS + W +A+D A
Sbjct: 440 IPLSTEKKALKALRICEQRQMTEQVRSICKTMAMQSLCNRRLGSALSWSIRAKDAAFATL 499
Query: 556 IAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTT 615
I+ + NF + LI LGS + L FL YR+F + Q
Sbjct: 500 ISDRFLKEY---CERGNFTDLD-LIDNLGSAMLLSDRLTFLGKYREFHRMYSQ------- 548
Query: 616 DAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSI 675
+ +A L+SLM P FWL LL D+L LL +++ + + QT L+ L++
Sbjct: 549 EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE-QKQVIFSAEQTYELMRCLEDRMA 607
Query: 676 ARLR---PDFI---EADLPPHALSSVRLALATNLGRTTLEE 710
A+L PD I ++ + + +RLALA NL R + E
Sbjct: 608 AKLESTSPDEIQKQDSSIDNTKVEMLRLALARNLARAIVTE 648
>sp|Q54NA0|NUP85_DICDI Nuclear pore complex protein nup85 OS=Dictyostelium discoideum
GN=nup85 PE=3 SV=1
Length = 890
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/528 (17%), Positives = 210/528 (39%), Gaps = 71/528 (13%)
Query: 225 EPKYWEVMSSALAVGWLDIVVKLLRL-----HGSYQLDQLGNRETENGLVEAVAVLISKM 279
+ +Y+ ++ L G +D V++ L + + Q+ + N L++ ++S +
Sbjct: 389 DSEYYNQIARLLVCGCIDQVIQQLNILSRAPRSASQIKSTSRKSPINLLID----ILSSI 444
Query: 280 PRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQC---AHRQTQEGLRNM 336
P + + G + + + W KW + K+ +I+ + Q E L +
Sbjct: 445 PLKKKSINGGGGAPLYPN--EHLIQWNKWHQETQKILSQ--YIESGSSSTNQVDENLLPI 500
Query: 337 LQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMG 396
++I+LG+ + + +++L +++ L++ +T + L +C Q + A +
Sbjct: 501 VKILLGDQQTIMSTCNSFLQLVVSNILFVE-YTTSTTQLRQLFTQCYQ--TIQAPTTVDK 557
Query: 397 LLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELH 456
+ + +++++ L + K W+ H ++L + L + E ++ E
Sbjct: 558 IFLSFATKDLDITLKKIFKHSPAWLAVHLSDLLYHHPYVMRKLPNSESQ---LTNIREYL 614
Query: 457 RLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYEL 516
+ Q L+S I YL G+ +++ + +QP+ + +K L+ +
Sbjct: 615 LSDFGQSLASDSSLLSIGCNYLKYVKNGGLEMIDQFISRQPIHFEKNAIKMLD--KWATS 672
Query: 517 DSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQW 576
++I K+ + ++K + + + WL A D + + ++ + ++ ++ E
Sbjct: 673 VETKNSIYKMLSLQDFKRKRYAASLNWLMLANDNSHITLLSNYLLEN---QLNSEFLNDL 729
Query: 577 EGLIQ--------------------------------LLGSEPK----TAGGLEFLHNYR 600
+ L++ ++ E K L FL YR
Sbjct: 730 QSLLEKNDEIDCNINNNNNNNNNNNSNNRISGNNNNNMIIDENKFEITNNSELIFLIRYR 789
Query: 601 DFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNV 660
+ SL + R + ++ SL + K+ P+RFWL LL D + LL + L
Sbjct: 790 ELI-SLWKER------SFKEYSSSLCLMFKDRVIPKRFWLRLLIDCVPLLE-SLKNLYFT 841
Query: 661 LQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTL 708
Q LLL E I D ++ + +R ALA NL ++ +
Sbjct: 842 YQDTLLLQSCLEEIIQSHLFDQYSFNISNQDIQILRSALARNLAKSII 889
>sp|Q9UUE5|NUP85_SCHPO Nucleoporin nup85 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup85 PE=1 SV=1
Length = 675
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 80/438 (18%), Positives = 158/438 (36%), Gaps = 80/438 (18%)
Query: 155 KKDPEPS-----NLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKL 209
+KD +P +++AW E+ Y S L ++DW+ YD +
Sbjct: 145 EKDCQPVLDSLWEVESAWRCAEAIYFPPSSPYTLSTGILDWVNAYDP----------QPI 194
Query: 210 VDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLV 269
D ++++ ++ P++W ++ G + + L + G + + +ET + L+
Sbjct: 195 ADDGLEIMAYRIPYQHPEFWPYVNKTAIRGLFEQTISCLEMSGLTK-EWPVLKETVDELI 253
Query: 270 EAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQT 329
+ + R P ++ ++ DF + W+ WR+++A L + +
Sbjct: 254 DIL--------RYSPCTHQKRI----RSVSDFERRWKLWRSRLANLRHVVKKHRDIDSEV 301
Query: 330 QEGLRNMLQIMLGNTNNLCTLTCHWMELYIA-HFLY-----IRPFTVGLESMYGLA---- 379
+ +L I+ GN + HW E + A FLY P + L +Y LA
Sbjct: 302 LDDFVVLLDILNGNKEVIMLSCAHWQEYFSALAFLYGPLDCKNPEDISL--LYQLATGED 359
Query: 380 ------------QKCIQL---KPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTH 424
Q C+ L +P+ A L +G + H
Sbjct: 360 SKFYVNGTIEYEQICVNLCSNEPLNAIKHAYLLDLG--------------------LAVH 399
Query: 425 AIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQ 484
++L+ H D + E I++ E L Y Q + WQ + Y
Sbjct: 400 LADLLSKSGHLRDYITEE-----YPITLREHLILEYGQCVLESRNLWQTSFAYWKCVADS 454
Query: 485 GMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWL 544
G ++ + P+ L++C+ +L + ++ G + L
Sbjct: 455 GYQRIKACIPYVPLSDVDAKETALQLCKQLKLRDEAQLVLTHWADELIARNHYGEALIAL 514
Query: 545 QQARDEARLNRIAQQMFD 562
A + + LNR+ ++FD
Sbjct: 515 DNAANYSALNRVTWELFD 532
>sp|Q6FCE6|HSCA_ACIAD Chaperone protein HscA homolog OS=Acinetobacter sp. (strain ADP1)
GN=hscA PE=3 SV=1
Length = 620
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 362 FLYIRPFTVGLESMYGLAQKCIQLK---PMAASHRLMGLLIGILGENIEVV-----LAEC 413
L + P ++GLE+M GL ++ I P+A G I VV L E
Sbjct: 387 LLDVTPLSLGLETMGGLVERLISRNTAIPVARRQEFTTYQDGQSAMLIHVVQGERDLVEH 446
Query: 414 SKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQI 473
+ G + V H I +TAG + + + D L +S +E V AQ+ I
Sbjct: 447 CRSLGRF-VLHGIPPMTAGQARIEVTFQVDADGLLTVSAQETTSGVKAQI--------DI 497
Query: 474 APIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWK 533
P Y S LLE + + D N L+ ++ EL+++ + AG+ + +
Sbjct: 498 KPSYGLSATDTERLLLEGFQHAEE-DKNLRHLQETKVEAQRELEALEQALKNDAGLLDIQ 556
Query: 534 H 534
Sbjct: 557 Q 557
>sp|P15801|DPOG_YEAST DNA polymerase gamma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP1 PE=1 SV=3
Length = 1254
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 128 YSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERL 187
+ K ++ + T+T+Q E LKK P P + LS+ LP +L
Sbjct: 337 FQKLVNYCATDVTATSQVFDEIFPVFLKKCPHPVSFAGL---------KSLSKCILPTKL 387
Query: 188 VDW---LADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGW---L 241
DW L +SL+ ++ + SK+V KD+V +++D+P ++ L W L
Sbjct: 388 NDWNDYLNSSESLYQQSKVQIESKIVQIIKDIV---LLKDKPDFY------LKDPWLSQL 438
Query: 242 DIVVKLLRL 250
D K LRL
Sbjct: 439 DWTTKPLRL 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,150,424
Number of Sequences: 539616
Number of extensions: 10890255
Number of successful extensions: 26273
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 26246
Number of HSP's gapped (non-prelim): 33
length of query: 711
length of database: 191,569,459
effective HSP length: 125
effective length of query: 586
effective length of database: 124,117,459
effective search space: 72732830974
effective search space used: 72732830974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)