Query 005153
Match_columns 711
No_of_seqs 150 out of 179
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f3f_C Nucleoporin NUP85; stru 100.0 1.6E-67 5.6E-72 588.4 32.9 434 76-555 97-570 (570)
2 3bg1_B Nucleoporin NUP145; NPC 98.2 7.5E-05 2.6E-09 82.7 21.3 288 163-536 120-440 (442)
3 3jro_A Fusion protein of prote 98.2 5.2E-05 1.8E-09 89.4 21.0 294 162-537 428-750 (753)
4 3iko_C Nucleoporin NUP84; NPC, 95.3 0.13 4.3E-06 57.2 13.3 231 225-498 177-454 (460)
5 2pm7_A Protein WEB1, protein t 94.5 0.4 1.4E-05 52.2 14.3 142 331-481 204-362 (399)
6 2qx5_A Nucleoporin NIC96; mRNA 91.6 17 0.00057 42.1 22.5 397 225-676 152-610 (661)
7 3mzk_B Protein transport prote 69.4 1E+02 0.0035 33.6 16.2 106 225-369 150-267 (441)
8 2pm7_A Protein WEB1, protein t 61.9 1.7E+02 0.006 31.3 16.7 41 517-557 242-284 (399)
9 2wpv_A GET4, UPF0363 protein Y 49.4 90 0.0031 32.4 10.8 85 481-566 90-178 (312)
10 3mkq_A Coatomer beta'-subunit; 41.0 83 0.0029 35.7 9.9 37 521-557 681-717 (814)
11 3lpz_A GET4 (YOR164C homolog); 40.6 1.7E+02 0.0058 30.8 11.2 85 481-566 92-180 (336)
12 3mkq_B Coatomer subunit alpha; 36.8 35 0.0012 32.6 4.8 49 504-556 21-69 (177)
13 2vkj_A TM1634; membrane protei 31.9 46 0.0016 28.2 4.1 39 528-566 60-101 (106)
14 3gw4_A Uncharacterized protein 23.4 1.2E+02 0.0043 27.0 6.1 47 503-549 48-94 (203)
15 2v5f_A Prolyl 4-hydroxylase su 22.1 55 0.0019 27.3 3.0 26 522-547 6-31 (104)
16 3ro3_A PINS homolog, G-protein 21.0 1.6E+02 0.0055 24.5 6.0 44 504-547 112-155 (164)
17 3ro3_A PINS homolog, G-protein 20.9 1.7E+02 0.0057 24.4 6.2 44 504-547 72-115 (164)
No 1
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=100.00 E-value=1.6e-67 Score=588.41 Aligned_cols=434 Identities=13% Similarity=0.154 Sum_probs=316.2
Q ss_pred CCCCchHHHHHHhhcchhhHhhhhhh-hcccccccccCCCCCCcHHHHHHHHHHHHHHHHHhccccccccc--ccCChhh
Q 005153 76 GEISDAQWRRIAYGSVSPFALLQSRK-NSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQS--LIEDPKE 152 (711)
Q Consensus 76 ~~~~~~~~R~L~~es~~~F~~lQ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~~~~--~~~~~~~ 152 (711)
.+-+++.-..-|+..|.||-.|=.-+ .+.+- ++...+ +. ..++...--.+..+.+++++...+. .+++ +
T Consensus 97 ~~d~s~~~~~Yv~~lf~~~~~l~~~~~~~~~~---iG~i~~--~~-~~~~~~~v~~a~~~~~~~l~~~i~~~~~~~~--~ 168 (570)
T 3f3f_C 97 RLDTSKEFSAYVSGLFEIYRDLGDDRVFNVPT---IGVVNS--NF-AKEHNATVNLAMEAILNELEVFIGRVKDQDG--R 168 (570)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTGGGGSCCC--------CCS--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--C
T ss_pred CCcccHHHHHHHHHHHHHHHHhccccccCCCC---ceeeec--ch-hhHHHHHHHHHHHHHHHHHHHHHHhhcccch--H
Confidence 34566899999999999998873221 12221 121211 11 0122222224455555555542211 0111 0
Q ss_pred hhccCCchhhHHHHHHHHHHHhcccCCCC------cchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhc------c
Q 005153 153 VLKKDPEPSNLKAAWELMESFYADKLSQA------WLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSL------Q 220 (711)
Q Consensus 153 ~~~~~~~~~~~~~iW~L~Eily~~~~~~~------~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~------~ 220 (711)
+ .....+.....||++++.+|+...+.+ .+.++|++|||++|+. |.+|. +++|+.. +
T Consensus 169 ~-~~~~~l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~e--P~~E~--------~~eVm~~~~~~~~~ 237 (570)
T 3f3f_C 169 V-NRFYELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGE--PDEEY--------IEQVFSVKDSTAGK 237 (570)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCC--SCHHH--------HHHHTTC----CCS
T ss_pred H-HHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCC--CCHHH--------HHHHHhcccccCCC
Confidence 0 002235677899999999999865433 6779999999999977 65553 4899885 9
Q ss_pred CCCCCcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccC-ccchhHHHHHHHHHHHhCCCCCccccccccccccCChh
Q 005153 221 VIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGN-RETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKP 299 (711)
Q Consensus 221 ~p~~~~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~-~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ 299 (711)
.|++||+||++|+++|+||+++||+++|+.++ + ..+++. ++....+++.++.||++||+++.
T Consensus 238 ~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~-~-~~~L~~~~~~~~~~i~dli~LL~~yP~~S~--------------- 300 (570)
T 3f3f_C 238 KVFETQYFWKLLNQLVLRGLLSQAIGCIERSD-L-LPYLSDTCAVSFDAVSDSIELLKQYPKDSS--------------- 300 (570)
T ss_dssp SSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTT-T-THHHHHSCHHHHHHHHHHHHHHTTCCSSCH---------------
T ss_pred CCCCCccHHHHHHHHHHcccHHHHHHHHHhcc-c-chhhcccChHHHHHHHHHHHHHHhCCCCch---------------
Confidence 99999999999999999999999999999654 3 123332 33445789999999999998852
Q ss_pred HHHHHHHHHHHHHH----HhhccchhhhccccccHHhHHHHHHHhcCCchHHHhhhccHHHHHHHhhheecCCccccchH
Q 005153 300 DFMKAWEKWRAQIA----KLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESM 375 (711)
Q Consensus 300 ef~~~w~~W~~~~~----~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l 375 (711)
.+|++||..|. .++.+.|-. +.+++++|++|++||+|++++|+++|+||||+++|+++|++|++++ .
T Consensus 301 ---~~fr~WK~~~~e~r~~l~~~~~~i---~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy~~Pt~k~---~ 371 (570)
T 3f3f_C 301 ---STFREWKNLVLKLSQAFGSSATDI---SGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLEL---S 371 (570)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSCCCS---CHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHHTCCCGGG---H
T ss_pred ---HHHHHHHHHHHHHHHHhccccccc---chHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheeeecCcccc---c
Confidence 24888888885 344444411 1237899999999999999999999999999999999999999965 4
Q ss_pred HHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCcccchhh--------hcc---
Q 005153 376 YGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLH--------EER--- 444 (711)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~W~aAHl~dLL~~~g~l~~~ll~--------~~~--- 444 (711)
++|++.|++..|++.++.+|.++++||+||+.+||+.|+ .+|+|+|||++|||+++|++.+.+-. .++
T Consensus 372 ~~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq-~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~~~ 450 (570)
T 3f3f_C 372 AEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVME-SLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEM 450 (570)
T ss_dssp HHHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHH-HHCHHHHHHHHHHHHHHTSSCCCCCC--------------
T ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHH-HhhHHHHHHHHHHHHHhCcccchhhhcccccccccccccc
Confidence 689999999999999999999999999999999999995 89999999999999999997653210 011
Q ss_pred --cCC-CCCchhHHHHHHHHHH--HccCCCcchhhhHHHhhchH----hhHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Q 005153 445 --DNL-GGISMEELHRLVYAQV--LSSHPLTWQIAPIYLTSCIK----QGMGLLEMLLYKQPVDHNQLLLKNLEICRLYE 515 (711)
Q Consensus 445 --~~~-~~~~lre~~Ll~YA~~--L~s~~~LW~vai~YL~~c~~----~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~ 515 (711)
+.+ .+.+||||++++||.+ +++|++||||||+||++||. .||.+|+++|+|+|++|+++++|++++|+++|
T Consensus 451 ~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~ 530 (570)
T 3f3f_C 451 LEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWR 530 (570)
T ss_dssp CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHT
T ss_pred HhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCC
Confidence 113 3679999999999999 99999999999999999986 59999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHH
Q 005153 516 LDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR 555 (711)
Q Consensus 516 L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ 555 (711)
|++++++||+++|++++++|++|+||+||+|||+..+|++
T Consensus 531 L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 531 LPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVKS 570 (570)
T ss_dssp CHHHHHHHHHHHHC--------------------------
T ss_pred ChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhccC
Confidence 9999999999999999999999999999999999999874
No 2
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=98.21 E-value=7.5e-05 Score=82.67 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhcccC-CCC----c---------chHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCCcch
Q 005153 163 LKAAWELMESFYADKL-SQA----W---------LPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKY 228 (711)
Q Consensus 163 ~~~iW~L~Eily~~~~-~~~----~---------v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~~~F 228 (711)
-..+|.||.+||=+.. |.+ . -.+.|-+|+.+... +..+ +++ ....++
T Consensus 120 e~~vW~L~saLf~~~~~~~~~~~~~~~~~~~~~~Rr~~l~~WL~~~~~---~~v~----------~~~------~~~~~~ 180 (442)
T 3bg1_B 120 DYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIG---PEIE----------EKI------RNSSNE 180 (442)
T ss_dssp HHHHHHHHHHHTSCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHSH---HHHH----------HHH------HTCSCH
T ss_pred HhHHHHHHHHhcCCCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHh------hcCCCH
Confidence 3679999999998742 211 1 11256689998732 1111 222 124688
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhCCCCCccccccccccccCChhHH-HHHHHH
Q 005153 229 WEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDF-MKAWEK 307 (711)
Q Consensus 229 W~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef-~~~w~~ 307 (711)
.+.|..+++.|++++|+++.-.++.+. +..||.++-... ....+. ..+-..
T Consensus 181 ~e~i~~~L~~~~v~eA~~~Ai~~~d~r----------------LA~Llsq~g~~~------------~~r~~la~~QL~~ 232 (442)
T 3bg1_B 181 IEQIFLYLLLNDVVRASKLAIESKNGH----------------LSVLISYLGSND------------PRIRDLAELQLQK 232 (442)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHH----------------HHHHHHHHTSCC------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCcH----------------HHHHHHHhcCCc------------hHHHHHHHHHHHH
Confidence 899999999999999999988775442 223333332111 134556 667778
Q ss_pred HHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCc-------hHHHhhhccHHHHHHHhhheecCCccccchHHHHHH
Q 005153 308 WRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNT-------NNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQ 380 (711)
Q Consensus 308 W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~-------~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~ 380 (711)
|+.. ..| +.+....|+++|+|+. -.+++ .-+|..+|..++.|..|..... .+.+.
T Consensus 233 W~~~------~~~--------I~~~~~kiY~LLAG~~~e~~~~~~~i~~-~LdW~ralgl~LWY~~~~~~si---~~av~ 294 (442)
T 3bg1_B 233 WSTG------GCS--------IDKNISKIYKLLSGSPFEGLFSLKELES-EFSWLCLLNLTLCYGQIDEYSL---ESLVQ 294 (442)
T ss_dssp TTSS------CCC--------SCHHHHHHHHHHHSCSTTSTTCSGGGGG-TSCHHHHHHHHHHTCCCSSCCH---HHHHH
T ss_pred HHHh------Ccc--------CCHHHHHHHHHhcCCcccccccchhccc-CCCHHHHHHHHhhcCCCCCCCH---HHHHH
Confidence 8733 223 5588999999999995 22333 6789999999999999865443 23333
Q ss_pred HHHHhCCCCcCCchHHHH---HHHHc--cCHHHHHHHHhh---ccCcchHHHHHHHHHcCCCcccchhhhcccCCCCCch
Q 005153 381 KCIQLKPMAASHRLMGLL---IGILG--ENIEVVLAECSK---GFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISM 452 (711)
Q Consensus 381 ~~~~~~~~~~~~~ld~il---~~ile--~d~~~vL~~~~~---~ld~W~aAHl~dLL~~~g~l~~~ll~~~~~~~~~~~l 452 (711)
.-.+.+. .|..+++ +.++. .++..+|.-.+. .+|.-+.=|+.-+|.+.|. . ++ ....
T Consensus 295 ~f~~~~~----~P~~D~~~~LLkLya~~~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~-~---------~~-~~~~ 359 (442)
T 3bg1_B 295 SHLDKFS----LPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGT-R---------VF-SKET 359 (442)
T ss_dssp HHHHHSC----CCTTCHHHHHHHHHHSCTTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSC-S---------CC-CHHH
T ss_pred HHHHhcc----CCCCCHHHHHHHHHccCCCHHHHhChhccCCCcccchhHHHHHHHHHhCCC-c---------cc-ChhH
Confidence 2222221 1223333 33332 677778765533 3455677788888888764 0 01 2345
Q ss_pred hHHHHHHHHHHHccCCCcchhhhHHHhhc--hHhhHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005153 453 EELHRLVYAQVLSSHPLTWQIAPIYLTSC--IKQGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGM 529 (711)
Q Consensus 453 re~~Ll~YA~~L~s~~~LW~vai~YL~~c--~~~G~~~i~~lL~r-~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~ 529 (711)
.+.+...||.+|-+ .++|+-|+=.|.+= +..=...|.++|.| ++.-++ .+---+..+++.|... |....+.
T Consensus 360 ~d~L~~~fA~QLe~-~Glw~wAifVllHl~d~~~Re~avr~lL~R~~~~~~~---~~~~fL~~~L~IP~~W--I~eAkAl 433 (442)
T 3bg1_B 360 SDEATFAFAAQLEF-AQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---STNDHILNRLKIPSQL--IFNAQAL 433 (442)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHSTGGGST---TTTSCHHHHTTCCHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCcHHHHHHHhhCCChHHHHHHHHHHHHhhcccccc---HHHHHHHHHhCCCHHH--HHHHHHH
Confidence 89999999999995 59999999999973 32334457777776 454332 1122334566666533 4444444
Q ss_pred HHHhcCC
Q 005153 530 YNWKHGK 536 (711)
Q Consensus 530 ~~~~~g~ 536 (711)
++..+|+
T Consensus 434 ~a~~~gd 440 (442)
T 3bg1_B 434 KDRYEGN 440 (442)
T ss_dssp HHHHHHH
T ss_pred HHHhcCC
Confidence 4444443
No 3
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.2e-05 Score=89.40 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHhcccC-C----CCc---------chHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCCcc
Q 005153 162 NLKAAWELMESFYADKL-S----QAW---------LPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPK 227 (711)
Q Consensus 162 ~~~~iW~L~Eily~~~~-~----~~~---------v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~~~ 227 (711)
....+|.||++||=+.. + ... --+.|.+|+.+.-. +..+ .++-....|
T Consensus 428 ~e~~~w~L~~~Lf~~~~~~~~~~~~~~~~~~~~~~r~~~~~~wl~~~~~---~~~~----------~~~~~~~~~----- 489 (753)
T 3jro_A 428 SDYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIG---PEIE----------EKIRNSSNE----- 489 (753)
T ss_dssp HHHHHHHHHHHHTSCCCCSSCCSSTTHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------TTTTSCSCT-----
T ss_pred hHHHHHHHHHHHcCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------hhhhccCCH-----
Confidence 46789999999994421 1 111 13456688876521 1111 111111122
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHHHH
Q 005153 228 YWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEK 307 (711)
Q Consensus 228 FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w~~ 307 (711)
=+.|..+++.|++++|+++.-.+..+. +..||..+-.-.+ ........+...
T Consensus 490 -~~~i~~~L~~~~i~~A~~~a~~~~~~~----------------la~ll~~~~~~~~-----------~~~~~~~~Ql~~ 541 (753)
T 3jro_A 490 -IEQIFLYLLLNDVVRASKLAIESKNGH----------------LSVLISYLGSNDP-----------RIRDLAELQLQK 541 (753)
T ss_dssp -THHHHHHTTTTCHHHHHHHHHHTTCCH----------------HHHHGGGCSSCCH-----------HHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHcCChH----------------HHHHHHHhcCCCH-----------HHHHHHHHHHHH
Confidence 256999999999999999988766552 2344433321111 123333456778
Q ss_pred HHHHHHHhhccchhhhccccccHHhHHHHHHHhcCC-------chHHHhhhccHHHHHHHhhheecCCccccchHHHHHH
Q 005153 308 WRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGN-------TNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQ 380 (711)
Q Consensus 308 W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd-------~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~ 380 (711)
|++ .+.| +.+.+..|+++|+|+ ...|. ..-+|.++|..++.|..|.... +.+.++
T Consensus 542 W~~------~~~~--------i~~~~~~iy~llag~~~~~~~~~~~~~-~~l~W~~~l~~~lwy~~~~~~~---~~~~~~ 603 (753)
T 3jro_A 542 WST------GGCS--------IDKNISKIYKLLSGSPFEGLFSLKELE-SEFSWLCLLNLTLCYGQIDEYS---LESLVQ 603 (753)
T ss_dssp HHT------TTCC--------CCHHHHHHHHTSSSCCSSSTTCCGGGG-TTSCHHHHHHHHHHTSCTTTSC---HHHHHH
T ss_pred HHH------cCCC--------CCHHHHHHHHHhCCCccccccchhhcc-CCCCHHHHHHHHHHcCCCCCCC---HHHHHH
Confidence 863 1233 458899999999994 33444 3678999999999998876543 345555
Q ss_pred HHHHhCCCCcCCchHHHHHHH--HccCHHHHHHHHhhcc---CcchHHHHHHHHHcCCCcccchhhhcccCCCCCchhHH
Q 005153 381 KCIQLKPMAASHRLMGLLIGI--LGENIEVVLAECSKGF---GPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEEL 455 (711)
Q Consensus 381 ~~~~~~~~~~~~~ld~il~~i--le~d~~~vL~~~~~~l---d~W~aAHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~ 455 (711)
...+.+++.....+-. ++.+ -..++..+|.-.+... |.=|.=|+.-+|.+.|. . ++ .....+.
T Consensus 604 ~~~~~~~~~~~d~~~~-ll~l~~~~~~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~-~---------~~-~~~~~~~ 671 (753)
T 3jro_A 604 SHLDKFSLPYDDPIGV-IFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGT-R---------VF-SKETSDE 671 (753)
T ss_dssp HHHTTCCCCTTCHHHH-HHHHHHCSTTHHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTC-S---------CC-CHHHHHH
T ss_pred HHHhccCCCccCHHHH-HHHHhcCCCCHHHhhccccCCCCCCccccHHHHHHHHHhcCC-C---------cc-ChhhHHH
Confidence 4444443221122111 1112 2567888887665433 42344478888877653 0 11 1245789
Q ss_pred HHHHHHHHHccCCCcchhhhHHHhhc--hHhhHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 005153 456 HRLVYAQVLSSHPLTWQIAPIYLTSC--IKQGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 532 (711)
Q Consensus 456 ~Ll~YA~~L~s~~~LW~vai~YL~~c--~~~G~~~i~~lL~r-~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~ 532 (711)
+.+.||.+|-+. ++|+-|+=.|.+- +..-...|.++|.| ++.-++++- --+..+++.|... |+...+.++.
T Consensus 672 l~~~~a~qL~~~-g~~~~a~fv~~h~~~~~~r~~~i~~~l~r~~~~~~~~~~---~~l~~~l~ip~~w--i~~a~a~~~~ 745 (753)
T 3jro_A 672 ATFAFAAQLEFA-QLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRASTN---DHILNRLKIPSQL--IFNAQALKDR 745 (753)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHTCSCHHHHHHHHHHHHHHSCTTSSTTTT---TTTTTTTTCCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchhHHHHhhhCCChHHHHHHHHHHHHhhhhhcCcchh---hhHHhccCCCHHH--HHHHHHHHHH
Confidence 999999999866 9999999999984 44456778888865 554332221 1255667777643 4454555555
Q ss_pred hcCCc
Q 005153 533 KHGKK 537 (711)
Q Consensus 533 ~~g~~ 537 (711)
.+|++
T Consensus 746 ~~~~~ 750 (753)
T 3jro_A 746 YEGNY 750 (753)
T ss_dssp HHHHH
T ss_pred hcCCc
Confidence 55544
No 4
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=95.35 E-value=0.13 Score=57.21 Aligned_cols=231 Identities=13% Similarity=0.159 Sum_probs=130.8
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhC-----CCCCccccccccccccCChh
Q 005153 225 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKM-----PRMRPELEAGKLGECFKAKP 299 (711)
Q Consensus 225 ~~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~m-----P~~~~~~~~g~~g~~~~s~~ 299 (711)
+..||.+|+.+|..|++++|+++-+..+.+= .+ ..|.-+ |.+.+...++ + ...
T Consensus 177 e~~l~~~i~~liR~G~~~eA~~lc~~~gq~W--------------RA--asL~G~~~~~dP~~~~~~~~e-----~-~~~ 234 (460)
T 3iko_C 177 DHIFFKYIYELILAGAIDEALEEAKLSDNIS--------------IC--MILCGIQEYLNPVIDTQIANE-----F-NTQ 234 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------------HH--HHHHTTSBCBCTTTSGGGTTT-----C-SSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCHH--------------HH--HHHcccccccCcccccccccc-----c-ccc
Confidence 4689999999999999999999998765431 11 112233 3333211000 0 011
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHHh--hhccHHHHHHHhhhe-----------e-
Q 005153 300 DFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT--LTCHWMELYIAHFLY-----------I- 365 (711)
Q Consensus 300 ef~~~w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~--~~~~WyE~l~a~lly-----------~- 365 (711)
+-...+.-||.-|-++..... +.+.=+-|+..|+|+-..+.. .| +|-+.+-+++== .
T Consensus 235 ~Gn~~r~LWkr~c~~lA~~~~--------~~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~n~ll~~~vd~~l~~~ 305 (460)
T 3iko_C 235 QGIKKHSLWRRTVYSLSQQAG--------LDPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHLNQILQTEIENYLLEN 305 (460)
T ss_dssp BSBTTHHHHHHHHHHHHHCSS--------SCHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCchhHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112347899999987753321 235558999999999998865 46 999988775311 0
Q ss_pred cCCc--c-------ccchHHHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCc-----------------
Q 005153 366 RPFT--V-------GLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP----------------- 419 (711)
Q Consensus 366 ~P~~--~-------~~e~l~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~----------------- 419 (711)
.|.. + ...++..+++......+....+|.-.+..+||.+++..++..+...+..
T Consensus 306 ~~~~~~~~~~~~P~~~~tl~~il~~L~~~~~~ea~~p~r~iQ~~iIl~~~~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~ 385 (460)
T 3iko_C 306 NQVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLMASVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKPYL 385 (460)
T ss_dssp TCSCGGGCCSCCCCCCCCHHHHHHHHHHHSHHHHHSTTHHHHHHHHSSCCHHHHHHHHHTCCC----------CTTSHHH
T ss_pred CCccccccccCCCCCccCHHHHHHHHHhcChHhhhChHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCccccccccCcch
Confidence 0110 0 0012344444333222223345667788999999999999877543321
Q ss_pred -chHHHHHHHHHcCCCcccchhhhcccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhc-hHhhHHHHHHhhccCC
Q 005153 420 -WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSC-IKQGMGLLEMLLYKQP 497 (711)
Q Consensus 420 -W~aAHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c-~~~G~~~i~~lL~r~P 497 (711)
=|+||++=+|...|. ..+ .....+-.|..|.+.|..+ ++.++-.=|.+.= ++......+.+|..+.
T Consensus 386 LRf~aHl~Lflr~l~~----------~~~-~~~~~~~II~~YI~~L~~~-~~~eLIplY~S~L~~~~~~e~Ys~fL~~i~ 453 (460)
T 3iko_C 386 LRIVTHLAICLDIINP----------GSV-EEVDKSKLITTYISLLKLQ-GLYENIPIYATFLNESDCLEACSFILSSLE 453 (460)
T ss_dssp HHHHHHHHHHHHHHST----------TSS-CHHHHHHHHHHHHHHHHHT-TCGGGHHHHHTTCGGGGGC-----------
T ss_pred HHHHHHHHHHHHHhCc----------ccc-ChHHHHHHHHHHHHHHHHC-CCcccHHHHHccCCHhHHHHHHHHHHhcCC
Confidence 256666655554431 001 1234678888999999865 4557777777764 4456777788887764
Q ss_pred C
Q 005153 498 V 498 (711)
Q Consensus 498 l 498 (711)
=
T Consensus 454 d 454 (460)
T 3iko_C 454 D 454 (460)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=94.54 E-value=0.4 Score=52.21 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=89.3
Q ss_pred HhHHHHHHHhcCCchHHHhh--hccHHHHHHHhhheecCCccccchH-HHHHHHHHHhCCCCcCCchHHHHHHHHccCHH
Q 005153 331 EGLRNMLQIMLGNTNNLCTL--TCHWMELYIAHFLYIRPFTVGLESM-YGLAQKCIQLKPMAASHRLMGLLIGILGENIE 407 (711)
Q Consensus 331 ~~L~~ll~IL~Gd~~~i~~~--~~~WyE~l~a~lly~~P~~~~~e~l-~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~ 407 (711)
+.++.|..|+.||-..+... ..+|.|.+++.+-|..|....+..+ ..+.++-.+.. ...+..+..|+.|++.
T Consensus 204 ~~~rll~~iv~~n~~d~V~~~~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g-----~~~~A~lCYi~Ag~~d 278 (399)
T 2pm7_A 204 SLSRILYSISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENG-----HRQDSLTLYLAAGSLD 278 (399)
T ss_dssp HHHHHHHHHHTTCCHHHHHHBCGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHccCHHHHHhcCChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCC-----ChhhhhHHHHhhCCHH
Confidence 67899999999999998765 4799999999999997651111112 34444333321 3357788999999999
Q ss_pred HHHHHHhhccC-----------cchHHH---HHHHHHcCCCcccchhhhcccCCCCCchhHHHHHHHHHHHccCCCcchh
Q 005153 408 VVLAECSKGFG-----------PWMVTH---AIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQI 473 (711)
Q Consensus 408 ~vL~~~~~~ld-----------~W~aAH---l~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~v 473 (711)
++...-...+. +=+.+| |.|++++.-++... ++ .........+-+ ++++||..|+++ +.-..
T Consensus 279 k~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~~a-~~-~~~~~~~~~l~~-~~~eYA~lLA~q-G~l~~ 354 (399)
T 2pm7_A 279 KVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNF-IN-GSSTINNEQLIA-KFLEFINLTTST-GNFEL 354 (399)
T ss_dssp HHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT-SC-C---CCCHHHHH-HHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHHHH-Hh-cCCCcCcHHHHH-HHHHHHHHHHhC-CCHHH
Confidence 88765322121 223344 56777654221111 10 000111223444 589999999865 88899
Q ss_pred hhHHHhhc
Q 005153 474 APIYLTSC 481 (711)
Q Consensus 474 ai~YL~~c 481 (711)
|..||..-
T Consensus 355 A~~yL~~l 362 (399)
T 2pm7_A 355 ATEFLNSL 362 (399)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99999863
No 6
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=91.59 E-value=17 Score=42.07 Aligned_cols=397 Identities=8% Similarity=-0.019 Sum_probs=192.8
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhCCCCCccccccccccccCChhHHHHH
Q 005153 225 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKA 304 (711)
Q Consensus 225 ~~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~ 304 (711)
...-|..|+=|+=.|..++|.+.++.++.... . .+ ..+...++..=.. + ++. -.++...+
T Consensus 152 g~p~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~-~-----~d----~~F~~~l~~~~~s-~---~~~------L~~~~~~~ 211 (661)
T 2qx5_A 152 GVPIWALIFYLLRAGLIKEALQVLVENKANIK-K-----VE----QSFLTYFKAYASS-K---DHG------LPVEYSTK 211 (661)
T ss_dssp TEEHHHHHHHHHTTTCHHHHHHHHHHTGGGC---------------CHHHHHHHC-------------------------
T ss_pred CcccHHHHHHHHhcCCHHHHHHHHHHhhhhHh-h-----hh----HHHHHHHHHHHhC-C---CCC------CCHHHHHH
Confidence 34599999999999999999999998754321 0 01 1222222222110 0 000 11111111
Q ss_pred -HHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchH------HHhhhccH--HHHHHHhhheecCCc----cc
Q 005153 305 -WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNN------LCTLTCHW--MELYIAHFLYIRPFT----VG 371 (711)
Q Consensus 305 -w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~------i~~~~~~W--yE~l~a~lly~~P~~----~~ 371 (711)
..+|+..++.-. .+++.=.-+++||.|-+-. +....+|| ..+.... -.+... ..
T Consensus 212 l~~ey~~~~r~~~-----------~~DpyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~lvr--e~~~~~~~~~e~ 278 (661)
T 2qx5_A 212 LHTEYNQHIKSSL-----------DGDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIK--EKDAENDPVYER 278 (661)
T ss_dssp --------------------------CHHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHTCC--C----------C
T ss_pred HHHHHHHHHhCCC-----------CCCHHHHHHHHHHhcccccccchHHHhccHHHHHHHHHHhcc--CCCccccccccc
Confidence 223333332100 0235556778888776432 33445665 4443221 111111 11
Q ss_pred cchHHHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCccc--chhhhcccCCCC
Q 005153 372 LESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQAD--TLLHEERDNLGG 449 (711)
Q Consensus 372 ~e~l~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~W~aAHl~dLL~~~g~l~~--~ll~~~~~~~~~ 449 (711)
+ .+..+ |+.+..+++.--+++ =...=++.|-.+.+|.-+... ..-=|+|+|=.|+..|++.. .++..+ .+.
T Consensus 279 y-tL~~L-Q~~I~~yGe~~F~~l-Yf~vLlLtgqFE~AI~~L~~~-~~vdAVH~AIaL~~~gLL~~~~~lls~~---~~~ 351 (661)
T 2qx5_A 279 Y-SLEDF-QNIIISYGPSRFSNY-YLQTLLLSGLYGLAIDYTYTF-SEMDAVHLAIGLASLKLFKIDSSTRLTK---KPK 351 (661)
T ss_dssp C-CHHHH-HHHHHHHCGGGGTTC-HHHHHHHTTCHHHHHHHHHTT-CHHHHHHHHHHHHHTTC-----------------
T ss_pred c-cHHHH-HHHHHHhhhhhhhhH-HHHHHHHHhhHHHHHHHHHhc-CchhHHHHHHHHHHcCCccCCCcccccC---CCc
Confidence 1 14443 333345554322221 123446689999999988544 66888899988988887442 111100 000
Q ss_pred Cch-hHHHHHHHHHHHccCCCcchhhhHHHhh-chH---hhHHHHHHhhccCCCCCHHHHHHHH-----------HHHHh
Q 005153 450 ISM-EELHRLVYAQVLSSHPLTWQIAPIYLTS-CIK---QGMGLLEMLLYKQPVDHNQLLLKNL-----------EICRL 513 (711)
Q Consensus 450 ~~l-re~~Ll~YA~~L~s~~~LW~vai~YL~~-c~~---~G~~~i~~lL~r~Pl~te~~~~k~l-----------~iC~~ 513 (711)
..+ ==.++..|.... ..+==+.|++|+.. |-. .|.....+.+..+-++| ++..+++ -+..+
T Consensus 352 ~~lN~arLI~~Yt~~F--~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvlet-r~f~~LLG~i~~dG~r~~G~i~~ 428 (661)
T 2qx5_A 352 RDIRFANILANYTKSF--RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLET-KEFTVLLGKIGRDGARIPGVIEE 428 (661)
T ss_dssp ---CHHHHHHHHHTTT--TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHH-CCHHHHHCEECTTSCEECCHHHH
T ss_pred ccccHHHHHHHHHHHh--hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhc-ccHHHHcCCcCCCCCcCcchHHH
Confidence 111 112344444433 34456789999885 543 34333333333222222 1122222 11112
Q ss_pred ----cCC---chHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhccCC--cchh-------hhhH
Q 005153 514 ----YEL---DSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSIS--DENF-------RQWE 577 (711)
Q Consensus 514 ----~~L---~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~~s--~~~~-------~~~~ 577 (711)
.+| .+..+.|+...|.++-.+|++..|+.-+..|+|.+.|=.+.++.|.+.+...+ .+.+ .++.
T Consensus 429 ~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~ 508 (661)
T 2qx5_A 429 RQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPV 508 (661)
T ss_dssp TCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHH
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence 223 24688899999999999999999999999999999999999998887764322 1110 1111
Q ss_pred ----HHHHhcCCCcc----cc----CcchhhhhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhcCCCCchhcHHH---H
Q 005153 578 ----GLIQLLGSEPK----TA----GGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLP---L 642 (711)
Q Consensus 578 ----dll~~l~~~~~----~s----~~L~FL~kY~eF~~~~~~~~~~~~~~~~r~Aa~~Lv~Ll~s~~~Pk~fw~~---L 642 (711)
.+++....... .+ ..+.-|-+-.+|+.+| ..|++. +|.+.+- +-++.|-. =.. -
T Consensus 509 ~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~---~~g~~~----~AL~~i~---~L~llPl~-d~~~i~~ 577 (661)
T 2qx5_A 509 LLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELY---FNKQWQ----ETLSQME---LLDLLPFS-DELSARK 577 (661)
T ss_dssp HHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HTTCHH----HHHHHHH---HTSCSCC------CHH
T ss_pred HHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHH---HcCCHH----HHHHHHH---hCCCCCCC-CchHHHH
Confidence 23333222211 11 2244477888899988 457765 3444443 34577755 111 1
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHHHHHHHHHhh
Q 005153 643 LHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIA 676 (711)
Q Consensus 643 L~dalpLLe~~~~~~fs~~qt~~LL~~LEel~~~ 676 (711)
-.+...-|..+=...+ .+=...-|.||-+....
T Consensus 578 ~a~~f~~l~~~V~~~l-P~lLl~aM~~l~~~~~~ 610 (661)
T 2qx5_A 578 KAQDFSNLDDNIVKNI-PNLLIITLSCISNMIHI 610 (661)
T ss_dssp HHHHGGGSCHHHHTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1222233321110122 23356677777766443
No 7
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=69.43 E-value=1e+02 Score=33.64 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=62.7
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhCCCCCccccccccccccCChhHHHHH
Q 005153 225 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKA 304 (711)
Q Consensus 225 ~~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~ 304 (711)
++..=+.|.++++.|+.++|+++=-.+..|.. ++. |=..+ .+
T Consensus 150 d~~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~--------------ALl-LAs~~------------------g~----- 191 (441)
T 3mzk_B 150 DINCQMRVLAFLQTGNHDEALRLALSKRDYAI--------------ALL-VGSLM------------------GK----- 191 (441)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------------HHH-HHHTS------------------CH-----
T ss_pred ChHHHHHHHHHHHcCCHHHHHHHHHhCCcHHH--------------HHH-HHHhc------------------CH-----
Confidence 44566679999999999999987665555521 111 11000 11
Q ss_pred HHHHHHHHHHhhccchhh-hccccccHHhHHHHHHHhcCCchHHHh-----------hhccHHHHHHHhhheecCCc
Q 005153 305 WEKWRAQIAKLECSTFWI-QCAHRQTQEGLRNMLQIMLGNTNNLCT-----------LTCHWMELYIAHFLYIRPFT 369 (711)
Q Consensus 305 w~~W~~~~~~L~~~~f~~-~~~~~~~~~~L~~ll~IL~Gd~~~i~~-----------~~~~WyE~l~a~lly~~P~~ 369 (711)
+.|++-+++.-...+-. ..++.....-|+.|++++.|+...+.. ...+|.|.+.+.+-+..+..
T Consensus 192 -e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~ 267 (441)
T 3mzk_B 192 -DRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKMAIKSFYTNNETSQWASENWKSIVAAVLINIPENN 267 (441)
T ss_dssp -HHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCS
T ss_pred -HHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHHHHHHhccCCccccchHhHHHHHHHHHHhCCCCch
Confidence 23554444222222201 001112345689999999999988654 34589999999998876643
No 8
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=61.91 E-value=1.7e+02 Score=31.33 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=36.9
Q ss_pred ch--HHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHH
Q 005153 517 DS--VSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 557 (711)
Q Consensus 517 ~~--va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ia 557 (711)
++ .-..+|..+|.|+..+|+.-.|..+|+=||+.+.+-.+=
T Consensus 242 ~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW 284 (399)
T 2pm7_A 242 NDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW 284 (399)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence 56 788999999999999999999999999999998877654
No 9
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.36 E-value=90 Score=32.44 Aligned_cols=85 Identities=5% Similarity=-0.030 Sum_probs=60.8
Q ss_pred chHhhHHHHHHhhccCCCCCH---HHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005153 481 CIKQGMGLLEMLLYKQPVDHN---QLLLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 556 (711)
Q Consensus 481 c~~~G~~~i~~lL~r~Pl~te---~~~~k~l~iC~~~~L~~v-a~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 556 (711)
|.+..+.+|-+++..+|-.+. +-+.+++..+.+.|=... --.+.+++|...+++|++.+|-.+++.+. .+.....
T Consensus 90 ~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~ 168 (312)
T 2wpv_A 90 VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKY 168 (312)
T ss_dssp CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHH
Confidence 346678899999999987654 235567888776633211 23689999999999999999999999665 3344566
Q ss_pred HHHHHHHHhc
Q 005153 557 AQQMFDSVGR 566 (711)
Q Consensus 557 ad~ll~~y~~ 566 (711)
++.+.+-+..
T Consensus 169 a~~l~~w~~~ 178 (312)
T 2wpv_A 169 VDLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7677654433
No 10
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=40.96 E-value=83 Score=35.74 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHH
Q 005153 521 SNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 557 (711)
Q Consensus 521 ~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ia 557 (711)
+...+.+|+.+++.|++-.|...+.+++|+..+..+.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence 4566889999999999999999999999999988764
No 11
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.64 E-value=1.7e+02 Score=30.75 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=60.2
Q ss_pred chHhhHHHHHHhhccCCCCCHHH---HHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005153 481 CIKQGMGLLEMLLYKQPVDHNQL---LLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 556 (711)
Q Consensus 481 c~~~G~~~i~~lL~r~Pl~te~~---~~k~l~iC~~~~L~~v-a~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 556 (711)
|.+..+.+|-+++..+|-.+..+ +.+++..+.+.|=... --.+...+|...+++++|.+|-.+++.+.|. ....+
T Consensus 92 ~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~-s~~~~ 170 (336)
T 3lpz_A 92 VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE-SPEVL 170 (336)
T ss_dssp CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc-hHHHH
Confidence 34567889999999999765432 4456677766542111 2358889999999999999999999986653 33667
Q ss_pred HHHHHHHHhc
Q 005153 557 AQQMFDSVGR 566 (711)
Q Consensus 557 ad~ll~~y~~ 566 (711)
++.+.+=+..
T Consensus 171 a~mL~ew~~~ 180 (336)
T 3lpz_A 171 ARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777654443
No 12
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=36.82 E-value=35 Score=32.64 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005153 504 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 556 (711)
Q Consensus 504 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 556 (711)
.+..+++|++.+ .....+.+|..++.+|++..|-.++.+++|+..+.-+
T Consensus 21 l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~L 69 (177)
T 3mkq_B 21 LDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFL 69 (177)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHH
Confidence 444555666542 2456788999999999999999999999999998653
No 13
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.93 E-value=46 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=32.9
Q ss_pred HHHHHhcCCchHHHHHHHHcC---ChHHHHHHHHHHHHHHhc
Q 005153 528 GMYNWKHGKKGSGVYWLQQAR---DEARLNRIAQQMFDSVGR 566 (711)
Q Consensus 528 g~~~~~~g~~g~AL~w~~rA~---D~~~v~~iad~ll~~y~~ 566 (711)
|..+.+.++||+|+..+-++. +-..++.|++..+++|-.
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 677888999999999998876 667889999998887643
No 14
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.45 E-value=1.2e+02 Score=26.99 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCC
Q 005153 503 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARD 549 (711)
Q Consensus 503 ~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D 549 (711)
...+.++++++.+.......++..+|.-....|++.+|+.++.++-+
T Consensus 48 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 48 SFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46668888888888887778888899999999999999988887643
No 15
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=22.07 E-value=55 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHc
Q 005153 522 NIMKIAGMYNWKHGKKGSGVYWLQQA 547 (711)
Q Consensus 522 ~I~k~~g~~~~~~g~~g~AL~w~~rA 547 (711)
.-|-.+|..+..+|+|..|+.|+..|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 35677999999999999999999877
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=21.01 E-value=1.6e+02 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005153 504 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 547 (711)
Q Consensus 504 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA 547 (711)
..+.++++.+.+-+.....++..+|.-....|++.+|+.++.++
T Consensus 112 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 112 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45566667666666666667777788888888888888877665
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.95 E-value=1.7e+02 Score=24.38 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005153 504 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 547 (711)
Q Consensus 504 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA 547 (711)
.++.++++.+.+-+.....++..+|.-....|++.+|+.++.++
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455555555555555556666777777777777777776554
Done!