Query 005154
Match_columns 711
No_of_seqs 337 out of 2826
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0480 FusA Translation elong 100.0 1E-141 3E-146 1198.8 75.8 686 21-709 7-694 (697)
2 KOG0465 Mitochondrial elongati 100.0 2E-143 5E-148 1137.3 53.3 682 19-705 34-720 (721)
3 PRK00007 elongation factor G; 100.0 3E-132 7E-137 1153.7 80.7 689 18-707 4-692 (693)
4 PRK12739 elongation factor G; 100.0 3E-131 7E-136 1146.1 79.5 687 19-707 3-689 (691)
5 TIGR00484 EF-G translation elo 100.0 4E-130 1E-134 1137.6 80.9 686 17-706 3-688 (689)
6 PRK13351 elongation factor G; 100.0 2E-126 4E-131 1110.9 81.7 684 19-704 3-686 (687)
7 PRK12740 elongation factor G; 100.0 9E-120 2E-124 1053.2 78.5 668 30-704 1-668 (668)
8 PLN00116 translation elongatio 100.0 1E-115 2E-120 1031.2 59.9 665 20-701 15-812 (843)
9 PTZ00416 elongation factor 2; 100.0 1E-114 2E-119 1020.0 60.7 658 21-700 16-804 (836)
10 TIGR00490 aEF-2 translation el 100.0 9E-112 2E-116 984.9 61.0 632 21-708 16-713 (720)
11 PRK07560 elongation factor EF- 100.0 1E-110 2E-115 979.0 59.5 618 11-708 8-715 (731)
12 KOG0464 Elongation factor G [T 100.0 3E-111 7E-116 852.0 31.9 675 19-706 32-749 (753)
13 KOG0469 Elongation factor 2 [T 100.0 7E-106 1E-110 829.5 27.7 662 22-700 17-810 (842)
14 KOG0468 U5 snRNP-specific prot 100.0 3.1E-87 6.7E-92 710.7 34.7 659 20-703 124-915 (971)
15 TIGR01394 TypA_BipA GTP-bindin 100.0 1.8E-83 4E-88 725.6 51.2 455 24-700 1-477 (594)
16 PRK10218 GTP-binding protein; 100.0 2.4E-81 5.3E-86 706.6 53.8 455 22-698 3-480 (607)
17 PRK05433 GTP-binding protein L 100.0 5.6E-81 1.2E-85 708.3 52.9 462 21-695 4-482 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 6.3E-80 1.4E-84 699.1 53.9 460 23-694 2-478 (595)
19 KOG0467 Translation elongation 100.0 7.3E-81 1.6E-85 674.8 31.4 658 19-698 4-832 (887)
20 PRK00741 prfC peptide chain re 100.0 5.4E-78 1.2E-82 673.0 49.8 447 22-502 8-472 (526)
21 TIGR00503 prfC peptide chain r 100.0 4.2E-74 9.1E-79 641.9 49.7 446 21-498 8-469 (527)
22 COG1217 TypA Predicted membran 100.0 2E-73 4.2E-78 587.7 39.4 453 22-699 3-480 (603)
23 KOG0462 Elongation factor-type 100.0 1.4E-71 2.9E-76 585.2 37.5 467 18-695 54-535 (650)
24 COG0481 LepA Membrane GTPase L 100.0 3E-70 6.5E-75 565.9 38.3 465 19-695 4-485 (603)
25 COG4108 PrfC Peptide chain rel 100.0 1.6E-63 3.5E-68 512.3 31.3 447 22-497 10-469 (528)
26 cd01886 EF-G Elongation factor 100.0 1.4E-50 3E-55 418.2 32.7 270 26-296 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 1.8E-46 3.9E-51 387.3 31.0 263 23-296 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 3E-44 6.5E-49 373.8 32.2 268 26-296 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 1.9E-43 4E-48 359.1 28.3 237 26-296 1-237 (237)
30 CHL00071 tufA elongation facto 100.0 4.5E-36 9.7E-41 329.5 31.6 274 21-408 9-307 (409)
31 PRK12736 elongation factor Tu; 100.0 4.1E-36 8.8E-41 328.2 31.1 273 21-408 9-297 (394)
32 PTZ00141 elongation factor 1- 100.0 1.5E-35 3.2E-40 327.0 29.9 272 22-408 5-318 (446)
33 PRK05306 infB translation init 100.0 3.8E-35 8.2E-40 338.2 32.5 304 21-455 287-620 (787)
34 PLN00043 elongation factor 1-a 100.0 2.5E-35 5.3E-40 324.9 28.7 272 22-408 5-318 (447)
35 TIGR00485 EF-Tu translation el 100.0 5.7E-35 1.2E-39 319.7 30.6 273 21-408 9-297 (394)
36 PLN03126 Elongation factor Tu; 100.0 2E-34 4.4E-39 318.6 31.5 272 21-408 78-376 (478)
37 PRK12735 elongation factor Tu; 100.0 1.9E-34 4.1E-39 315.3 30.9 272 22-408 10-299 (396)
38 COG5256 TEF1 Translation elong 100.0 2.3E-34 5E-39 298.3 28.0 274 22-413 5-321 (428)
39 PRK00049 elongation factor Tu; 100.0 2.6E-34 5.6E-39 314.0 29.8 271 22-408 10-299 (396)
40 PRK12317 elongation factor 1-a 100.0 2.9E-34 6.2E-39 318.0 29.4 273 22-409 4-311 (425)
41 PLN03127 Elongation factor Tu; 100.0 4.7E-34 1E-38 314.4 30.4 274 20-408 57-350 (447)
42 TIGR02034 CysN sulfate adenyly 100.0 1.1E-33 2.3E-38 310.1 27.4 271 26-410 2-302 (406)
43 TIGR00487 IF-2 translation ini 100.0 1.1E-32 2.4E-37 311.5 33.8 311 22-472 85-426 (587)
44 TIGR00483 EF-1_alpha translati 100.0 5E-33 1.1E-37 307.9 29.1 273 22-409 5-313 (426)
45 PRK05124 cysN sulfate adenylyl 100.0 1.1E-32 2.3E-37 306.5 28.8 276 22-410 25-330 (474)
46 PTZ00327 eukaryotic translatio 100.0 9.4E-33 2E-37 303.1 27.7 259 21-410 31-353 (460)
47 COG0050 TufB GTPases - transla 100.0 2E-33 4.3E-38 276.1 19.6 273 22-409 10-298 (394)
48 KOG0460 Mitochondrial translat 100.0 1.2E-33 2.6E-38 282.6 15.5 272 22-409 52-342 (449)
49 CHL00189 infB translation init 100.0 1.2E-31 2.7E-36 306.3 29.3 295 22-447 242-567 (742)
50 PRK10512 selenocysteinyl-tRNA- 100.0 3.4E-31 7.4E-36 301.8 28.1 251 26-408 2-260 (614)
51 PRK04000 translation initiatio 100.0 2.3E-30 5E-35 283.7 29.8 259 22-411 7-321 (411)
52 PRK05506 bifunctional sulfate 100.0 2.1E-30 4.5E-35 299.8 28.6 275 22-410 22-326 (632)
53 TIGR03680 eif2g_arch translati 100.0 6E-30 1.3E-34 280.7 29.4 257 23-410 3-315 (406)
54 PF00009 GTP_EFTU: Elongation 100.0 3.7E-31 8.1E-36 260.8 16.6 145 22-166 1-147 (188)
55 TIGR00475 selB selenocysteine- 100.0 1.4E-29 3E-34 288.0 29.0 253 26-407 2-260 (581)
56 COG3276 SelB Selenocysteine-sp 100.0 5.3E-29 1.2E-33 260.4 21.6 249 26-408 2-256 (447)
57 KOG1145 Mitochondrial translat 100.0 3.2E-28 6.9E-33 257.5 27.5 295 22-447 151-496 (683)
58 COG0532 InfB Translation initi 100.0 2.8E-28 6.2E-33 261.7 27.4 253 23-406 4-260 (509)
59 cd01885 EF2 EF2 (for archaea a 100.0 1.7E-28 3.7E-33 245.9 20.1 129 25-155 1-139 (222)
60 COG5258 GTPBP1 GTPase [General 100.0 1.9E-27 4.1E-32 241.6 24.8 285 23-410 116-439 (527)
61 PRK04004 translation initiatio 100.0 5.3E-27 1.1E-31 266.2 28.4 303 23-405 5-326 (586)
62 COG2895 CysN GTPases - Sulfate 100.0 1.1E-27 2.4E-32 241.8 19.5 290 23-434 5-331 (431)
63 KOG0458 Elongation factor 1 al 100.0 1.1E-26 2.5E-31 249.1 25.8 273 20-406 173-488 (603)
64 COG5257 GCD11 Translation init 100.0 1.3E-26 2.9E-31 230.9 24.5 306 22-470 8-362 (415)
65 cd01884 EF_Tu EF-Tu subfamily. 99.9 7.4E-27 1.6E-31 230.3 20.1 129 24-155 2-132 (195)
66 TIGR00491 aIF-2 translation in 99.9 1.7E-25 3.7E-30 252.6 29.5 287 23-404 3-323 (590)
67 KOG0461 Selenocysteine-specifi 99.9 1.2E-24 2.5E-29 218.2 19.8 247 24-392 7-267 (522)
68 cd01890 LepA LepA subfamily. 99.9 3.8E-24 8.2E-29 208.9 21.0 130 25-157 1-135 (179)
69 cd01883 EF1_alpha Eukaryotic e 99.9 1.4E-24 3E-29 219.0 17.5 130 26-155 1-151 (219)
70 PF03764 EFG_IV: Elongation fa 99.9 1.2E-24 2.5E-29 198.0 14.1 119 493-612 1-120 (120)
71 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.6E-24 5.6E-29 215.4 16.2 131 26-156 1-145 (208)
72 cd01891 TypA_BipA TypA (tyrosi 99.9 1.4E-23 3.1E-28 207.9 20.5 143 23-167 1-143 (194)
73 cd04167 Snu114p Snu114p subfam 99.9 3.5E-23 7.6E-28 208.1 19.6 130 25-154 1-136 (213)
74 cd01684 Tet_like_IV EF-G_domai 99.9 1.9E-23 4.2E-28 187.5 14.7 115 495-612 1-115 (115)
75 PRK14845 translation initiatio 99.9 4.3E-22 9.4E-27 234.6 28.4 322 28-445 469-832 (1049)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 4.5E-23 9.8E-28 205.6 16.9 116 25-155 1-151 (203)
77 cd01889 SelB_euk SelB subfamil 99.9 4.2E-22 9.2E-27 197.0 19.3 119 26-155 2-134 (192)
78 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 2.7E-22 5.8E-27 181.1 13.2 116 497-612 1-116 (116)
79 KOG0459 Polypeptide release fa 99.9 1.1E-22 2.5E-27 208.5 12.0 291 20-412 75-394 (501)
80 cd04165 GTPBP1_like GTPBP1-lik 99.9 8.5E-22 1.8E-26 198.5 17.5 141 26-170 1-168 (224)
81 cd01680 EFG_like_IV Elongation 99.9 8.4E-22 1.8E-26 178.2 13.5 116 497-612 1-116 (116)
82 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3E-22 6.5E-27 167.4 8.2 79 617-695 1-80 (80)
83 cd00881 GTP_translation_factor 99.9 1.4E-20 3.1E-25 184.8 20.9 142 26-169 1-143 (189)
84 PF00679 EFG_C: Elongation fac 99.9 8.7E-22 1.9E-26 168.6 9.2 89 614-702 1-89 (89)
85 KOG0463 GTP-binding protein GP 99.9 4.9E-21 1.1E-25 194.0 14.1 283 25-411 134-459 (641)
86 cd01693 mtEFG2_like_IV mtEF-G2 99.9 3.8E-21 8.2E-26 174.7 12.1 116 495-612 1-120 (120)
87 smart00838 EFG_C Elongation fa 99.8 1.8E-21 3.9E-26 165.3 7.8 83 615-698 1-83 (85)
88 cd01683 EF2_IV_snRNP EF-2_doma 99.8 8E-21 1.7E-25 183.0 12.6 127 492-622 1-178 (178)
89 cd04171 SelB SelB subfamily. 99.8 1.4E-19 2.9E-24 173.5 17.5 117 25-156 1-119 (164)
90 KOG1143 Predicted translation 99.8 1.1E-19 2.4E-24 184.2 16.4 285 25-408 168-491 (591)
91 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.3E-20 5E-25 155.7 8.4 78 617-695 1-78 (78)
92 PF14492 EFG_II: Elongation Fa 99.8 2.9E-20 6.3E-25 153.0 8.7 75 418-492 1-75 (75)
93 KOG1144 Translation initiation 99.8 2.2E-19 4.9E-24 195.3 17.2 253 23-373 474-751 (1064)
94 cd03711 Tet_C Tet_C: C-terminu 99.8 4.4E-20 9.5E-25 154.0 8.7 78 617-695 1-78 (78)
95 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 5.2E-20 1.1E-24 153.8 8.0 78 617-695 1-78 (78)
96 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.4E-23 184.1 20.1 114 25-155 4-126 (444)
97 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.3E-19 2.8E-24 151.4 9.0 78 617-694 1-78 (79)
98 cd04096 eEF2_snRNP_like_C eEF2 99.8 8E-20 1.7E-24 153.4 7.7 79 617-695 1-80 (80)
99 cd01681 aeEF2_snRNP_like_IV Th 99.8 5.7E-19 1.2E-23 171.5 12.3 86 536-621 86-177 (177)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 5.5E-18 1.2E-22 163.2 18.4 115 25-157 1-118 (168)
101 COG1159 Era GTPase [General fu 99.8 4.3E-18 9.3E-23 171.5 17.6 117 24-157 6-130 (298)
102 PRK09554 feoB ferrous iron tra 99.8 2.2E-18 4.7E-23 201.0 17.8 240 24-293 3-263 (772)
103 cd01514 Elongation_Factor_C El 99.8 3.6E-19 7.9E-24 149.1 8.2 79 617-695 1-79 (79)
104 cd03709 lepA_C lepA_C: This fa 99.8 5E-19 1.1E-23 148.1 8.9 78 617-694 1-79 (80)
105 PF02421 FeoB_N: Ferrous iron 99.8 3E-18 6.6E-23 160.8 14.2 110 26-155 2-119 (156)
106 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2E-17 4.3E-22 159.4 15.4 117 26-156 1-122 (167)
107 COG1160 Predicted GTPases [Gen 99.7 3.5E-17 7.5E-22 173.9 17.9 117 23-156 177-304 (444)
108 TIGR00436 era GTP-binding prot 99.7 5.3E-17 1.2E-21 169.1 19.0 112 26-155 2-121 (270)
109 PRK15494 era GTPase Era; Provi 99.7 5.7E-17 1.2E-21 173.8 19.5 116 23-155 51-174 (339)
110 cd03690 Tet_II Tet_II: This su 99.7 1.3E-17 2.8E-22 141.3 11.1 85 321-406 1-85 (85)
111 KOG0466 Translation initiation 99.7 4.1E-18 8.8E-23 168.9 8.9 250 20-396 34-341 (466)
112 cd01894 EngA1 EngA1 subfamily. 99.7 5.2E-17 1.1E-21 154.3 16.1 112 28-156 1-120 (157)
113 PRK00093 GTP-binding protein D 99.7 8.6E-17 1.9E-21 179.5 19.2 116 23-155 172-298 (435)
114 TIGR03594 GTPase_EngA ribosome 99.7 8.3E-17 1.8E-21 179.4 17.6 116 22-154 170-296 (429)
115 cd01895 EngA2 EngA2 subfamily. 99.7 2.3E-16 5E-21 152.2 18.3 116 24-156 2-128 (174)
116 cd04157 Arl6 Arl6 subfamily. 99.7 7.8E-17 1.7E-21 154.2 14.8 112 26-156 1-119 (162)
117 cd04154 Arl2 Arl2 subfamily. 99.7 1.5E-16 3.1E-21 154.6 16.2 113 23-156 13-130 (173)
118 cd01864 Rab19 Rab19 subfamily. 99.7 2.8E-16 6E-21 151.2 17.5 115 23-155 2-122 (165)
119 cd04151 Arl1 Arl1 subfamily. 99.7 2.1E-16 4.6E-21 150.9 15.4 110 26-156 1-115 (158)
120 PRK03003 GTP-binding protein D 99.7 2.7E-16 5.9E-21 176.4 18.2 117 22-155 36-160 (472)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.7E-16 6E-21 150.0 15.0 110 26-156 1-115 (158)
122 cd04092 mtEFG2_II_like mtEFG2_ 99.7 9.1E-17 2E-21 135.9 10.2 83 324-406 1-83 (83)
123 PRK03003 GTP-binding protein D 99.7 3.4E-16 7.4E-21 175.6 18.0 116 23-155 210-336 (472)
124 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.4E-16 1.2E-20 150.8 16.9 111 24-155 15-130 (174)
125 cd04124 RabL2 RabL2 subfamily. 99.7 5.2E-16 1.1E-20 148.8 15.8 113 26-154 2-117 (161)
126 PRK00089 era GTPase Era; Revie 99.7 1.1E-15 2.4E-20 161.4 19.7 116 23-155 4-127 (292)
127 cd01898 Obg Obg subfamily. Th 99.7 5.1E-16 1.1E-20 149.9 15.8 113 26-156 2-129 (170)
128 TIGR03594 GTPase_EngA ribosome 99.7 3.2E-16 6.9E-21 174.7 16.3 114 26-156 1-122 (429)
129 cd04145 M_R_Ras_like M-Ras/R-R 99.7 9.4E-16 2E-20 147.0 17.0 115 24-155 2-121 (164)
130 cd00879 Sar1 Sar1 subfamily. 99.7 6.7E-16 1.5E-20 152.2 15.6 112 23-155 18-134 (190)
131 cd04113 Rab4 Rab4 subfamily. 99.7 8.1E-16 1.8E-20 147.2 15.7 114 26-155 2-119 (161)
132 cd01897 NOG NOG1 is a nucleola 99.7 1.1E-15 2.4E-20 147.4 16.6 113 25-155 1-127 (168)
133 cd04149 Arf6 Arf6 subfamily. 99.7 1.1E-15 2.3E-20 147.9 16.0 111 24-155 9-124 (168)
134 cd03689 RF3_II RF3_II: this su 99.7 2.8E-16 6.2E-21 132.9 10.0 81 326-406 1-84 (85)
135 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 3.2E-16 6.9E-21 132.6 10.2 83 324-406 1-83 (83)
136 PRK15467 ethanolamine utilizat 99.7 8.7E-16 1.9E-20 146.8 14.2 102 25-157 2-107 (158)
137 smart00177 ARF ARF-like small 99.7 2.2E-15 4.8E-20 146.6 17.2 112 24-156 13-129 (175)
138 PRK04213 GTP-binding protein; 99.7 1.9E-15 4.1E-20 150.5 16.9 125 22-169 7-157 (201)
139 smart00178 SAR Sar1p-like memb 99.7 1.5E-15 3.3E-20 149.0 15.9 113 22-155 15-132 (184)
140 PRK09518 bifunctional cytidyla 99.7 9.3E-16 2E-20 180.0 16.8 117 22-155 448-575 (712)
141 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.8E-15 4E-20 144.8 15.8 109 26-155 2-115 (159)
142 cd01879 FeoB Ferrous iron tran 99.7 9.2E-16 2E-20 146.0 13.7 108 29-156 1-116 (158)
143 COG0218 Predicted GTPase [Gene 99.7 2.7E-15 5.9E-20 143.6 16.6 140 13-171 13-166 (200)
144 PRK09518 bifunctional cytidyla 99.7 2E-15 4.4E-20 177.2 19.3 118 21-155 272-397 (712)
145 cd04158 ARD1 ARD1 subfamily. 99.7 1.6E-15 3.5E-20 146.7 15.4 109 26-155 1-114 (169)
146 cd01865 Rab3 Rab3 subfamily. 99.7 1.8E-15 3.8E-20 145.7 15.6 115 25-155 2-120 (165)
147 cd04091 mtEFG1_II_like mtEFG1_ 99.7 5.6E-16 1.2E-20 130.3 10.4 81 324-406 1-81 (81)
148 cd04106 Rab23_lke Rab23-like s 99.7 2.3E-15 4.9E-20 144.1 16.0 114 26-155 2-120 (162)
149 smart00173 RAS Ras subfamily o 99.7 2.3E-15 5E-20 144.5 16.0 113 26-155 2-119 (164)
150 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.8E-15 4E-20 148.3 15.5 114 25-155 4-123 (183)
151 PLN00223 ADP-ribosylation fact 99.7 2.7E-15 5.8E-20 146.9 16.3 112 24-156 17-133 (181)
152 cd01867 Rab8_Rab10_Rab13_like 99.7 3.6E-15 7.7E-20 143.9 16.9 117 23-155 2-122 (167)
153 cd04163 Era Era subfamily. Er 99.6 9.1E-15 2E-19 139.7 19.4 115 24-155 3-125 (168)
154 cd04114 Rab30 Rab30 subfamily. 99.6 2.4E-15 5.2E-20 145.1 15.5 116 22-155 5-126 (169)
155 cd01866 Rab2 Rab2 subfamily. 99.6 3.2E-15 6.9E-20 144.4 16.2 116 24-155 4-123 (168)
156 cd01862 Rab7 Rab7 subfamily. 99.6 2.7E-15 5.8E-20 145.0 15.7 114 26-155 2-123 (172)
157 cd01860 Rab5_related Rab5-rela 99.6 3.7E-15 8.1E-20 142.8 16.5 115 25-155 2-120 (163)
158 cd04119 RJL RJL (RabJ-Like) su 99.6 2.2E-15 4.8E-20 144.7 14.8 113 26-154 2-123 (168)
159 TIGR03598 GTPase_YsxC ribosome 99.6 1.9E-15 4.1E-20 147.6 14.6 121 16-155 10-143 (179)
160 PTZ00133 ADP-ribosylation fact 99.6 3E-15 6.5E-20 146.6 15.9 112 24-156 17-133 (182)
161 cd04138 H_N_K_Ras_like H-Ras/N 99.6 4.2E-15 9.2E-20 141.9 16.5 114 25-155 2-120 (162)
162 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 3.7E-15 8E-20 143.5 16.1 116 24-155 2-121 (166)
163 cd04122 Rab14 Rab14 subfamily. 99.6 3.7E-15 8E-20 143.6 16.0 116 24-155 2-121 (166)
164 smart00175 RAB Rab subfamily o 99.6 3.5E-15 7.6E-20 143.0 15.4 112 26-155 2-119 (164)
165 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.1E-15 8.9E-20 148.1 16.4 114 26-155 2-124 (201)
166 PTZ00369 Ras-like protein; Pro 99.6 3.4E-15 7.3E-20 147.2 15.6 115 24-155 5-124 (189)
167 cd01863 Rab18 Rab18 subfamily. 99.6 4.1E-15 8.8E-20 142.3 15.3 113 26-154 2-119 (161)
168 cd01878 HflX HflX subfamily. 99.6 4.7E-15 1E-19 148.1 16.3 130 7-156 26-168 (204)
169 cd04159 Arl10_like Arl10-like 99.6 5.9E-15 1.3E-19 139.9 16.2 110 27-156 2-116 (159)
170 PRK00093 GTP-binding protein D 99.6 4.3E-15 9.3E-20 165.8 17.8 114 25-155 2-123 (435)
171 cd01861 Rab6 Rab6 subfamily. 99.6 8.7E-15 1.9E-19 139.9 17.4 112 25-154 1-118 (161)
172 cd04136 Rap_like Rap-like subf 99.6 5E-15 1.1E-19 141.8 15.7 114 25-155 2-120 (163)
173 cd04175 Rap1 Rap1 subgroup. T 99.6 6E-15 1.3E-19 141.7 15.8 112 25-155 2-120 (164)
174 cd00877 Ran Ran (Ras-related n 99.6 4.4E-15 9.6E-20 143.2 14.8 113 26-154 2-117 (166)
175 cd04164 trmE TrmE (MnmE, ThdF, 99.6 5E-15 1.1E-19 140.5 15.0 113 25-156 2-122 (157)
176 cd01868 Rab11_like Rab11-like. 99.6 8.9E-15 1.9E-19 140.6 16.3 114 24-155 3-122 (165)
177 cd04155 Arl3 Arl3 subfamily. 99.6 5.8E-15 1.3E-19 143.1 15.1 113 23-156 13-130 (173)
178 cd04161 Arl2l1_Arl13_like Arl2 99.6 7.2E-15 1.6E-19 141.9 15.6 111 26-157 1-116 (167)
179 cd04120 Rab12 Rab12 subfamily. 99.6 9.4E-15 2E-19 145.2 16.5 112 26-155 2-119 (202)
180 cd04156 ARLTS1 ARLTS1 subfamil 99.6 6.9E-15 1.5E-19 140.5 15.1 109 26-155 1-115 (160)
181 cd04139 RalA_RalB RalA/RalB su 99.6 7.3E-15 1.6E-19 140.6 15.2 113 26-155 2-119 (164)
182 cd04123 Rab21 Rab21 subfamily. 99.6 1.2E-14 2.7E-19 138.6 16.2 114 26-155 2-119 (162)
183 COG2229 Predicted GTPase [Gene 99.6 1.9E-14 4E-19 134.7 16.7 125 24-157 10-137 (187)
184 cd04127 Rab27A Rab27a subfamil 99.6 1.3E-14 2.9E-19 141.5 16.7 117 23-155 3-134 (180)
185 cd01893 Miro1 Miro1 subfamily. 99.6 1.3E-14 2.8E-19 139.9 16.3 113 26-156 2-118 (166)
186 PRK00454 engB GTP-binding prot 99.6 1.3E-14 2.7E-19 143.8 16.7 122 16-156 16-150 (196)
187 cd04147 Ras_dva Ras-dva subfam 99.6 6.3E-15 1.4E-19 146.5 14.3 111 26-155 1-118 (198)
188 TIGR02729 Obg_CgtA Obg family 99.6 1.2E-14 2.7E-19 154.5 17.2 116 23-156 156-288 (329)
189 cd04116 Rab9 Rab9 subfamily. 99.6 1.5E-14 3.2E-19 139.8 16.2 116 23-154 4-127 (170)
190 cd04140 ARHI_like ARHI subfami 99.6 9E-15 1.9E-19 140.8 14.5 114 25-155 2-122 (165)
191 cd04110 Rab35 Rab35 subfamily. 99.6 1.7E-14 3.7E-19 143.4 17.0 115 23-155 5-124 (199)
192 cd00154 Rab Rab family. Rab G 99.6 1.4E-14 2.9E-19 137.3 15.6 113 26-154 2-118 (159)
193 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.6E-14 3.5E-19 139.0 16.2 111 27-157 2-115 (164)
194 TIGR03156 GTP_HflX GTP-binding 99.6 1.1E-14 2.3E-19 156.5 16.2 115 23-155 188-315 (351)
195 TIGR00231 small_GTP small GTP- 99.6 4.3E-15 9.2E-20 140.3 11.7 113 25-156 2-123 (161)
196 cd03691 BipA_TypA_II BipA_TypA 99.6 4.5E-15 9.9E-20 126.4 10.6 83 324-406 1-86 (86)
197 cd04177 RSR1 RSR1 subgroup. R 99.6 1.6E-14 3.5E-19 139.4 15.8 113 26-155 3-120 (168)
198 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.8E-14 3.9E-19 139.5 16.1 115 23-155 1-123 (170)
199 PRK05291 trmE tRNA modificatio 99.6 8E-15 1.7E-19 162.9 15.3 113 24-155 215-335 (449)
200 cd04176 Rap2 Rap2 subgroup. T 99.6 2.3E-14 5E-19 137.4 16.4 114 25-155 2-120 (163)
201 PLN03118 Rab family protein; P 99.6 2.2E-14 4.7E-19 144.1 16.9 117 22-155 12-134 (211)
202 TIGR02528 EutP ethanolamine ut 99.6 9E-15 2E-19 137.0 13.2 97 26-155 2-102 (142)
203 PLN03110 Rab GTPase; Provision 99.6 2.2E-14 4.7E-19 144.6 16.8 119 21-155 9-131 (216)
204 PRK12298 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.7E-19 156.6 17.0 114 24-155 159-289 (390)
205 cd04112 Rab26 Rab26 subfamily. 99.6 1.5E-14 3.2E-19 142.9 15.2 115 26-155 2-120 (191)
206 PRK12299 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.1E-19 153.2 16.9 116 23-156 157-286 (335)
207 cd00880 Era_like Era (E. coli 99.6 2.8E-14 6.1E-19 134.8 16.1 111 29-156 1-119 (163)
208 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 3.4E-14 7.3E-19 137.9 16.9 114 25-155 3-121 (172)
209 cd04137 RheB Rheb (Ras Homolog 99.6 2.4E-14 5.3E-19 139.7 15.7 112 25-155 2-120 (180)
210 PLN03071 GTP-binding nuclear p 99.6 2.5E-14 5.3E-19 144.4 16.1 117 22-154 11-130 (219)
211 cd04121 Rab40 Rab40 subfamily. 99.6 4E-14 8.6E-19 139.3 17.0 118 22-155 4-124 (189)
212 cd01882 BMS1 Bms1. Bms1 is an 99.6 5.4E-15 1.2E-19 149.6 11.1 157 22-203 37-209 (225)
213 cd04126 Rab20 Rab20 subfamily. 99.6 4.2E-14 9.1E-19 142.1 17.3 109 26-155 2-114 (220)
214 cd04144 Ras2 Ras2 subfamily. 99.6 3.9E-14 8.4E-19 139.8 16.7 113 26-155 1-120 (190)
215 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.6E-14 5.6E-19 157.9 16.6 116 23-156 202-325 (442)
216 PF00025 Arf: ADP-ribosylation 99.6 2.1E-14 4.6E-19 139.7 14.0 114 22-156 12-130 (175)
217 cd00876 Ras Ras family. The R 99.6 3.3E-14 7.2E-19 135.3 15.1 111 26-155 1-118 (160)
218 COG0486 ThdF Predicted GTPase 99.6 1.9E-14 4E-19 153.6 14.6 117 23-157 216-340 (454)
219 cd03699 lepA_II lepA_II: This 99.6 8.8E-15 1.9E-19 124.5 9.9 82 324-406 1-86 (86)
220 cd01874 Cdc42 Cdc42 subfamily. 99.6 8.7E-14 1.9E-18 135.4 18.2 111 25-155 2-119 (175)
221 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.6E-14 7.8E-19 137.4 15.3 114 26-155 2-120 (170)
222 cd04142 RRP22 RRP22 subfamily. 99.6 2.9E-14 6.2E-19 141.5 14.9 112 26-155 2-130 (198)
223 KOG1423 Ras-like GTPase ERA [C 99.6 3.6E-14 7.9E-19 141.9 15.3 118 22-156 70-200 (379)
224 cd04109 Rab28 Rab28 subfamily. 99.6 6.1E-14 1.3E-18 141.2 17.1 112 26-155 2-123 (215)
225 PRK12297 obgE GTPase CgtA; Rev 99.6 5.2E-14 1.1E-18 153.5 17.5 113 24-154 158-287 (424)
226 cd04146 RERG_RasL11_like RERG/ 99.6 3.6E-14 7.8E-19 136.5 14.5 112 26-154 1-119 (165)
227 smart00176 RAN Ran (Ras-relate 99.6 2.8E-14 6.2E-19 141.5 14.1 109 30-154 1-112 (200)
228 cd04101 RabL4 RabL4 (Rab-like4 99.6 5.6E-14 1.2E-18 134.8 15.6 116 26-155 2-121 (164)
229 PLN03108 Rab family protein; P 99.6 8.4E-14 1.8E-18 139.7 17.3 117 23-155 5-125 (210)
230 cd04135 Tc10 TC10 subfamily. 99.6 4.6E-14 1E-18 136.9 14.6 114 26-156 2-119 (174)
231 PRK12296 obgE GTPase CgtA; Rev 99.6 6.8E-14 1.5E-18 154.4 17.3 115 23-155 158-298 (500)
232 cd01881 Obg_like The Obg-like 99.6 4.9E-14 1.1E-18 136.7 13.8 110 29-156 1-135 (176)
233 cd00157 Rho Rho (Ras homology) 99.5 6.2E-14 1.3E-18 135.3 14.2 115 26-157 2-120 (171)
234 PRK11058 GTPase HflX; Provisio 99.5 5.4E-14 1.2E-18 154.5 15.4 114 24-155 197-323 (426)
235 cd04118 Rab24 Rab24 subfamily. 99.5 1.1E-13 2.3E-18 136.9 16.0 115 26-155 2-119 (193)
236 cd04125 RabA_like RabA-like su 99.5 1E-13 2.2E-18 136.5 15.6 114 26-155 2-119 (188)
237 KOG0078 GTP-binding protein SE 99.5 2.3E-13 5.1E-18 130.4 17.2 120 20-155 8-131 (207)
238 cd04132 Rho4_like Rho4-like su 99.5 1.5E-13 3.3E-18 135.0 16.6 110 26-155 2-119 (187)
239 cd04143 Rhes_like Rhes_like su 99.5 1.2E-13 2.7E-18 141.5 16.4 113 26-155 2-127 (247)
240 cd04128 Spg1 Spg1p. Spg1p (se 99.5 1E-13 2.2E-18 135.8 15.2 113 26-155 2-118 (182)
241 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.7E-13 3.7E-18 128.7 15.7 120 21-156 19-143 (221)
242 cd04134 Rho3 Rho3 subfamily. 99.5 1.1E-13 2.3E-18 136.5 15.4 115 25-156 1-119 (189)
243 cd04111 Rab39 Rab39 subfamily. 99.5 1.2E-13 2.6E-18 138.6 15.5 114 24-155 2-123 (211)
244 cd01892 Miro2 Miro2 subfamily. 99.5 1.1E-13 2.3E-18 134.0 14.4 118 23-155 3-122 (169)
245 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.3E-13 2.8E-18 130.1 14.3 120 21-156 6-129 (205)
246 COG0370 FeoB Fe2+ transport sy 99.5 1.3E-13 2.9E-18 153.1 16.6 111 24-154 3-121 (653)
247 cd01871 Rac1_like Rac1-like su 99.5 1.7E-13 3.6E-18 133.3 15.5 114 25-155 2-119 (174)
248 cd01875 RhoG RhoG subfamily. 99.5 1.9E-13 4E-18 135.1 15.8 111 25-155 4-121 (191)
249 cd04117 Rab15 Rab15 subfamily. 99.5 2.8E-13 6.1E-18 129.9 16.6 112 26-155 2-119 (161)
250 cd04133 Rop_like Rop subfamily 99.5 1.7E-13 3.7E-18 133.2 14.9 114 25-155 2-119 (176)
251 cd03700 eEF2_snRNP_like_II EF2 99.5 3.7E-14 8E-19 122.5 9.1 82 324-405 1-92 (93)
252 COG1084 Predicted GTPase [Gene 99.5 1.6E-13 3.4E-18 139.7 14.8 135 3-157 148-296 (346)
253 smart00174 RHO Rho (Ras homolo 99.5 1.7E-13 3.6E-18 132.9 14.5 112 27-155 1-116 (174)
254 TIGR00437 feoB ferrous iron tr 99.5 1.1E-13 2.4E-18 158.3 15.1 105 31-155 1-113 (591)
255 cd01870 RhoA_like RhoA-like su 99.5 1.9E-13 4E-18 132.7 14.4 114 25-155 2-119 (175)
256 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.6E-13 5.6E-18 131.7 15.2 113 26-155 2-118 (173)
257 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 1E-13 2.3E-18 119.9 10.0 80 324-403 1-90 (94)
258 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 6E-13 1.3E-17 130.2 16.4 116 23-155 4-123 (182)
259 cd01876 YihA_EngB The YihA (En 99.5 8E-13 1.7E-17 126.6 16.3 110 27-155 2-124 (170)
260 cd04131 Rnd Rnd subfamily. Th 99.5 6.3E-13 1.4E-17 129.7 15.5 114 25-155 2-119 (178)
261 PF10662 PduV-EutP: Ethanolami 99.5 3.1E-13 6.8E-18 124.1 12.2 97 25-154 2-102 (143)
262 cd00882 Ras_like_GTPase Ras-li 99.5 3.4E-13 7.4E-18 125.8 12.5 113 29-157 1-118 (157)
263 KOG0092 GTPase Rab5/YPT51 and 99.5 4.5E-13 9.8E-18 126.0 12.9 116 24-155 5-124 (200)
264 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1.2E-12 2.7E-17 132.3 17.0 115 24-155 13-131 (232)
265 cd04148 RGK RGK subfamily. Th 99.5 1E-12 2.2E-17 132.8 15.8 113 26-155 2-120 (221)
266 KOG0073 GTP-binding ADP-ribosy 99.5 2E-12 4.4E-17 118.0 15.3 112 24-156 16-132 (185)
267 COG2262 HflX GTPases [General 99.4 8.6E-13 1.9E-17 138.5 14.3 134 3-156 173-319 (411)
268 PF01926 MMR_HSR1: 50S ribosom 99.4 9.3E-13 2E-17 119.0 12.8 107 26-150 1-116 (116)
269 COG3596 Predicted GTPase [Gene 99.4 2.1E-12 4.5E-17 128.6 16.3 118 21-155 36-162 (296)
270 cd04105 SR_beta Signal recogni 99.4 8.7E-13 1.9E-17 131.4 13.8 112 25-157 1-125 (203)
271 PTZ00132 GTP-binding nuclear p 99.4 3.5E-12 7.7E-17 128.4 17.2 117 23-155 8-127 (215)
272 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 3E-12 6.4E-17 128.9 16.3 114 25-155 2-119 (222)
273 cd04103 Centaurin_gamma Centau 99.4 4.2E-12 9.2E-17 121.3 16.2 104 26-154 2-112 (158)
274 cd01896 DRG The developmentall 99.4 2.8E-12 6.2E-17 130.4 15.5 133 26-178 2-157 (233)
275 KOG0080 GTPase Rab18, small G 99.4 2.1E-12 4.6E-17 117.0 12.7 118 22-155 9-131 (209)
276 KOG1489 Predicted GTP-binding 99.4 2.8E-12 6.2E-17 129.3 14.3 117 22-156 194-327 (366)
277 KOG0098 GTPase Rab2, small G p 99.4 4.8E-12 1E-16 118.0 13.5 118 23-156 5-126 (216)
278 KOG0093 GTPase Rab3, small G p 99.4 7.4E-12 1.6E-16 111.8 13.7 119 23-157 20-142 (193)
279 PF00071 Ras: Ras family; Int 99.4 7.8E-12 1.7E-16 119.6 15.0 114 26-155 1-118 (162)
280 KOG0394 Ras-related GTPase [Ge 99.4 2.3E-12 5E-17 119.9 10.5 118 23-156 8-133 (210)
281 cd04129 Rho2 Rho2 subfamily. 99.4 1E-11 2.2E-16 122.2 15.7 114 25-155 2-119 (187)
282 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1E-11 2.2E-16 123.2 15.1 115 25-156 1-131 (196)
283 cd01873 RhoBTB RhoBTB subfamil 99.4 1.3E-11 2.9E-16 122.0 15.6 67 87-155 64-134 (195)
284 KOG0070 GTP-binding ADP-ribosy 99.3 5E-12 1.1E-16 118.8 10.7 115 22-157 15-134 (181)
285 cd04104 p47_IIGP_like p47 (47- 99.3 2.5E-11 5.5E-16 120.4 15.1 114 25-155 2-121 (197)
286 KOG0075 GTP-binding ADP-ribosy 99.3 9.4E-12 2E-16 111.3 10.2 113 24-156 20-137 (186)
287 COG1163 DRG Predicted GTPase [ 99.3 1.4E-11 3.1E-16 124.9 12.8 136 24-178 63-220 (365)
288 KOG0087 GTPase Rab11/YPT3, sma 99.3 1.7E-11 3.7E-16 117.1 11.9 120 20-155 10-133 (222)
289 PF09439 SRPRB: Signal recogni 99.3 7.5E-12 1.6E-16 120.3 9.5 113 23-158 2-129 (181)
290 PLN00023 GTP-binding protein; 99.3 3E-11 6.5E-16 125.8 14.6 122 18-155 15-165 (334)
291 PRK09866 hypothetical protein; 99.3 6.4E-11 1.4E-15 131.2 17.5 68 88-155 229-303 (741)
292 cd04102 RabL3 RabL3 (Rab-like3 99.3 4.8E-11 1E-15 118.4 14.7 115 26-156 2-144 (202)
293 KOG0086 GTPase Rab4, small G p 99.3 5.9E-11 1.3E-15 106.7 12.4 120 22-157 7-130 (214)
294 KOG0079 GTP-binding protein H- 99.3 2E-11 4.3E-16 109.1 9.0 119 22-156 6-127 (198)
295 cd01850 CDC_Septin CDC/Septin. 99.3 8.5E-11 1.8E-15 122.4 14.9 137 24-169 4-172 (276)
296 PF08477 Miro: Miro-like prote 99.2 1.3E-11 2.9E-16 111.7 7.6 113 26-152 1-119 (119)
297 PRK13768 GTPase; Provisional 99.2 1.4E-10 2.9E-15 119.5 15.6 70 88-157 96-178 (253)
298 PRK09435 membrane ATPase/prote 99.2 1.6E-10 3.5E-15 122.2 15.1 142 21-169 53-223 (332)
299 KOG1191 Mitochondrial GTPase [ 99.2 1.2E-10 2.6E-15 124.2 13.2 113 22-151 266-387 (531)
300 KOG0095 GTPase Rab30, small G 99.2 1.6E-10 3.5E-15 103.4 11.8 119 22-156 5-127 (213)
301 KOG1532 GTPase XAB1, interacts 99.2 2.4E-10 5.3E-15 112.9 13.6 139 20-158 15-198 (366)
302 COG0536 Obg Predicted GTPase [ 99.1 4.9E-10 1.1E-14 114.9 14.0 115 24-156 159-290 (369)
303 PF03308 ArgK: ArgK protein; 99.1 1E-10 2.2E-15 116.9 7.5 137 22-167 27-191 (266)
304 KOG0076 GTP-binding ADP-ribosy 99.1 1.8E-10 4E-15 106.4 8.3 119 24-156 17-141 (197)
305 KOG0071 GTP-binding ADP-ribosy 99.1 1.4E-09 3E-14 96.8 13.4 124 24-171 17-145 (180)
306 cd01899 Ygr210 Ygr210 subfamil 99.1 1.7E-09 3.6E-14 114.4 16.7 37 88-124 68-111 (318)
307 KOG0088 GTPase Rab21, small G 99.1 8.5E-11 1.8E-15 106.3 5.7 117 24-156 13-133 (218)
308 KOG0090 Signal recognition par 99.1 4.7E-10 1E-14 107.4 11.0 118 25-163 39-167 (238)
309 PTZ00099 rab6; Provisional 99.1 1.1E-09 2.4E-14 106.5 12.0 69 87-155 27-99 (176)
310 TIGR00073 hypB hydrogenase acc 99.1 2E-09 4.4E-14 107.6 14.0 130 17-155 15-162 (207)
311 KOG0072 GTP-binding ADP-ribosy 99.1 3.5E-10 7.6E-15 101.0 7.2 114 22-156 16-134 (182)
312 COG1703 ArgK Putative periplas 99.0 2.5E-09 5.4E-14 108.2 12.2 140 21-169 48-215 (323)
313 COG1100 GTPase SAR1 and relate 99.0 2.1E-09 4.5E-14 108.4 11.6 113 25-157 6-127 (219)
314 PF03144 GTP_EFTU_D2: Elongati 99.0 3E-10 6.6E-15 93.7 4.4 68 338-405 1-74 (74)
315 KOG1490 GTP-binding protein CR 99.0 1.3E-09 2.8E-14 116.1 10.1 135 2-156 147-296 (620)
316 PF03029 ATP_bind_1: Conserved 99.0 4.3E-09 9.3E-14 107.0 13.6 129 29-157 1-172 (238)
317 KOG0081 GTPase Rab27, small G 99.0 1.3E-09 2.8E-14 98.8 7.9 116 25-156 10-139 (219)
318 cd01853 Toc34_like Toc34-like 99.0 9.8E-09 2.1E-13 105.1 15.4 118 22-156 29-164 (249)
319 KOG0091 GTPase Rab39, small G 99.0 1.2E-08 2.6E-13 93.2 14.0 115 25-156 9-131 (213)
320 TIGR02836 spore_IV_A stage IV 99.0 8.4E-09 1.8E-13 109.1 14.3 151 24-176 17-215 (492)
321 smart00053 DYNc Dynamin, GTPas 98.9 1.2E-08 2.6E-13 103.3 13.8 135 23-157 25-208 (240)
322 KOG0395 Ras-related GTPase [Ge 98.9 7.3E-09 1.6E-13 102.1 11.7 116 24-156 3-123 (196)
323 KOG0074 GTP-binding ADP-ribosy 98.9 7.6E-09 1.6E-13 92.2 10.0 114 22-156 15-134 (185)
324 PRK09602 translation-associate 98.9 1.8E-08 3.9E-13 109.8 15.3 82 25-124 2-114 (396)
325 KOG0097 GTPase Rab14, small G 98.9 2.1E-08 4.6E-13 89.0 11.9 121 20-156 7-131 (215)
326 TIGR00750 lao LAO/AO transport 98.9 3.8E-08 8.2E-13 104.1 15.7 130 21-157 31-188 (300)
327 KOG0052 Translation elongation 98.9 6.4E-10 1.4E-14 116.4 1.9 130 23-155 6-156 (391)
328 COG4917 EutP Ethanolamine util 98.9 8.6E-09 1.9E-13 90.3 8.4 99 25-155 2-104 (148)
329 COG5019 CDC3 Septin family pro 98.8 6.3E-08 1.4E-12 100.9 15.3 166 2-180 5-202 (373)
330 KOG0083 GTPase Rab26/Rab37, sm 98.8 2.3E-09 5E-14 94.3 3.9 113 29-156 2-118 (192)
331 COG5192 BMS1 GTP-binding prote 98.8 4E-08 8.7E-13 105.4 13.1 120 24-169 69-189 (1077)
332 KOG4252 GTP-binding protein [S 98.8 6.4E-09 1.4E-13 96.2 6.2 122 18-155 14-138 (246)
333 cd03693 EF1_alpha_II EF1_alpha 98.8 3.5E-08 7.5E-13 84.8 10.3 85 321-409 2-90 (91)
334 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 5.1E-08 1.1E-12 98.1 12.1 115 26-157 1-127 (232)
335 cd03698 eRF3_II_like eRF3_II_l 98.8 4.7E-08 1E-12 82.4 10.0 79 323-406 1-83 (83)
336 TIGR00101 ureG urease accessor 98.8 9.9E-08 2.2E-12 94.6 13.8 59 88-155 91-151 (199)
337 TIGR00991 3a0901s02IAP34 GTP-b 98.7 1.9E-07 4.1E-12 97.1 15.0 116 23-155 37-167 (313)
338 PF00350 Dynamin_N: Dynamin fa 98.7 2.6E-08 5.7E-13 95.9 7.5 64 88-151 100-168 (168)
339 cd01342 Translation_Factor_II_ 98.7 7.4E-08 1.6E-12 80.2 9.1 78 324-405 1-82 (83)
340 KOG2655 Septin family protein 98.7 2.3E-07 4.9E-12 97.6 13.8 163 1-177 2-195 (366)
341 KOG0077 Vesicle coat complex C 98.7 6E-08 1.3E-12 89.2 8.2 124 23-170 19-147 (193)
342 PF05049 IIGP: Interferon-indu 98.7 1.7E-07 3.7E-12 100.0 12.7 113 24-153 35-153 (376)
343 KOG0410 Predicted GTP binding 98.6 2E-07 4.3E-12 94.8 11.1 117 22-155 176-308 (410)
344 PF00735 Septin: Septin; Inte 98.6 4.3E-07 9.3E-12 94.7 13.8 138 24-170 4-172 (281)
345 PF04548 AIG1: AIG1 family; I 98.6 3.8E-07 8.3E-12 91.5 12.9 116 25-157 1-132 (212)
346 KOG2486 Predicted GTPase [Gene 98.6 3E-07 6.4E-12 91.9 10.3 120 18-155 130-262 (320)
347 PRK10463 hydrogenase nickel in 98.6 3.8E-07 8.3E-12 94.2 11.5 126 21-155 101-244 (290)
348 KOG1547 Septin CDC10 and relat 98.6 8.5E-07 1.8E-11 86.5 12.7 138 24-171 46-215 (336)
349 cd04089 eRF3_II eRF3_II: domai 98.5 7.4E-07 1.6E-11 75.0 10.1 78 323-406 1-82 (82)
350 KOG0393 Ras-related small GTPa 98.5 3.2E-07 6.9E-12 88.9 8.7 114 24-154 4-122 (198)
351 PTZ00258 GTP-binding protein; 98.5 6.5E-07 1.4E-11 96.7 11.3 84 22-123 19-126 (390)
352 cd01900 YchF YchF subfamily. 98.5 4.5E-07 9.8E-12 93.7 9.0 79 27-123 1-103 (274)
353 PRK09601 GTP-binding protein Y 98.4 1E-06 2.2E-11 94.2 10.4 81 25-123 3-107 (364)
354 cd01859 MJ1464 MJ1464. This f 98.4 1.2E-06 2.7E-11 83.3 10.1 52 104-155 4-55 (156)
355 cd03695 CysN_NodQ_II CysN_NodQ 98.4 2.2E-06 4.8E-11 71.8 9.4 77 325-405 2-80 (81)
356 cd03696 selB_II selB_II: this 98.4 2E-06 4.4E-11 72.5 9.0 79 324-406 1-83 (83)
357 KOG1486 GTP-binding protein DR 98.4 2.8E-06 6E-11 83.5 10.9 83 25-125 63-152 (364)
358 cd03697 EFTU_II EFTU_II: Elong 98.3 2.6E-06 5.7E-11 72.5 8.5 80 324-407 1-86 (87)
359 cd03694 GTPBP_II Domain II of 98.3 4.4E-06 9.6E-11 71.0 9.7 78 325-406 2-87 (87)
360 TIGR00993 3a0901s04IAP86 chlor 98.3 1.5E-05 3.2E-10 89.7 15.8 119 20-155 114-250 (763)
361 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 2.3E-06 5.1E-11 80.7 7.1 117 23-155 9-128 (216)
362 KOG1954 Endocytosis/signaling 98.2 4.4E-05 9.6E-10 79.1 15.9 136 21-156 55-226 (532)
363 COG0378 HypB Ni2+-binding GTPa 98.2 7.4E-06 1.6E-10 78.5 9.2 123 24-155 13-156 (202)
364 KOG3883 Ras family small GTPas 98.2 6.2E-05 1.3E-09 68.6 13.9 117 23-155 8-132 (198)
365 PRK14722 flhF flagellar biosyn 98.2 5.6E-06 1.2E-10 89.1 8.6 129 22-155 135-295 (374)
366 KOG3886 GTP-binding protein [S 98.1 4.9E-06 1.1E-10 81.0 7.1 120 23-159 3-134 (295)
367 cd01858 NGP_1 NGP-1. Autoanti 98.1 9.3E-06 2E-10 77.4 8.1 50 106-155 2-53 (157)
368 KOG1707 Predicted Ras related/ 98.1 2.8E-05 6E-10 85.4 12.6 116 23-156 8-130 (625)
369 cd03115 SRP The signal recogni 98.1 2.6E-05 5.6E-10 75.5 10.9 128 26-155 2-153 (173)
370 cd03114 ArgK-like The function 98.1 2.3E-05 4.9E-10 73.9 10.1 59 87-152 90-148 (148)
371 cd03110 Fer4_NifH_child This p 98.1 8.6E-05 1.9E-09 72.3 14.3 68 87-156 91-158 (179)
372 TIGR01425 SRP54_euk signal rec 98.1 3.3E-05 7.1E-10 84.5 12.2 129 24-154 100-252 (429)
373 cd02036 MinD Bacterial cell di 98.0 0.00011 2.4E-09 71.2 14.3 82 90-173 64-146 (179)
374 cd01856 YlqF YlqF. Proteins o 98.0 2.1E-05 4.5E-10 76.1 8.8 58 96-155 2-60 (171)
375 cd03112 CobW_like The function 98.0 5.6E-05 1.2E-09 72.1 11.6 123 26-153 2-158 (158)
376 cd01855 YqeH YqeH. YqeH is an 98.0 2.2E-05 4.8E-10 77.3 9.0 57 97-155 19-75 (190)
377 TIGR00064 ftsY signal recognit 98.0 7.6E-05 1.7E-09 77.6 13.1 131 22-154 70-230 (272)
378 KOG1673 Ras GTPases [General f 98.0 3.1E-05 6.7E-10 70.6 8.7 115 24-154 20-137 (205)
379 PRK10416 signal recognition pa 98.0 5.5E-05 1.2E-09 80.3 12.1 130 23-154 113-272 (318)
380 TIGR03596 GTPase_YlqF ribosome 97.9 3E-05 6.4E-10 81.2 9.2 56 97-154 5-61 (276)
381 cd03692 mtIF2_IVc mtIF2_IVc: t 97.9 0.00011 2.4E-09 62.0 9.8 74 327-404 4-82 (84)
382 PF03193 DUF258: Protein of un 97.9 1.1E-05 2.3E-10 76.3 3.9 65 25-102 36-100 (161)
383 PF00448 SRP54: SRP54-type pro 97.9 2.7E-05 5.8E-10 77.0 6.7 124 25-155 2-154 (196)
384 cd01858 NGP_1 NGP-1. Autoanti 97.9 3E-05 6.5E-10 73.8 6.8 22 24-45 102-123 (157)
385 cd01849 YlqF_related_GTPase Yl 97.9 5.8E-05 1.3E-09 71.7 8.6 42 114-155 1-43 (155)
386 cd01849 YlqF_related_GTPase Yl 97.8 3.9E-05 8.4E-10 72.9 6.0 57 23-99 99-155 (155)
387 cd04178 Nucleostemin_like Nucl 97.8 4.6E-05 9.9E-10 73.7 6.5 56 24-99 117-172 (172)
388 PRK10867 signal recognition pa 97.8 0.0014 3E-08 72.3 18.8 141 24-171 100-268 (433)
389 TIGR03597 GTPase_YqeH ribosome 97.8 3.3E-05 7.2E-10 83.8 6.1 131 25-171 155-297 (360)
390 cd01851 GBP Guanylate-binding 97.8 9.2E-05 2E-09 74.9 8.9 90 22-123 5-102 (224)
391 PRK09563 rbgA GTPase YlqF; Rev 97.7 7.5E-05 1.6E-09 78.6 8.1 57 96-154 7-64 (287)
392 PRK12727 flagellar biosynthesi 97.7 0.00036 7.9E-09 77.6 13.3 131 22-154 348-497 (559)
393 PRK00771 signal recognition pa 97.7 0.00023 5E-09 78.6 11.8 127 23-154 94-245 (437)
394 PRK14974 cell division protein 97.7 0.00022 4.7E-09 76.1 11.2 127 23-154 139-292 (336)
395 cd01855 YqeH YqeH. YqeH is an 97.7 4.4E-05 9.5E-10 75.2 5.6 63 24-99 127-190 (190)
396 PRK12288 GTPase RsgA; Reviewed 97.7 4.5E-05 9.8E-10 81.9 6.0 65 25-102 206-270 (347)
397 COG1162 Predicted GTPases [Gen 97.7 3.7E-05 8E-10 79.3 4.3 65 25-102 165-229 (301)
398 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 8.4E-05 1.8E-09 69.4 6.1 20 26-45 85-104 (141)
399 KOG0448 Mitofusin 1 GTPase, in 97.6 0.00047 1E-08 77.2 12.3 134 23-157 108-277 (749)
400 PRK11889 flhF flagellar biosyn 97.6 0.00033 7.1E-09 75.2 10.4 130 24-155 241-391 (436)
401 COG0012 Predicted GTPase, prob 97.6 0.00016 3.4E-09 76.4 7.9 95 25-124 3-109 (372)
402 cd02038 FleN-like FleN is a me 97.6 0.00082 1.8E-08 62.6 12.0 75 89-166 45-121 (139)
403 TIGR00092 GTP-binding protein 97.6 0.00021 4.5E-09 76.7 8.9 83 25-124 3-109 (368)
404 TIGR00157 ribosome small subun 97.6 7.5E-05 1.6E-09 76.6 5.3 64 25-102 121-184 (245)
405 PRK13849 putative crown gall t 97.6 0.00083 1.8E-08 68.2 12.4 126 26-153 3-152 (231)
406 cd03688 eIF2_gamma_II eIF2_gam 97.6 0.00049 1.1E-08 60.0 8.9 81 320-404 2-104 (113)
407 cd02037 MRP-like MRP (Multiple 97.5 0.00044 9.6E-09 66.6 9.5 66 87-154 66-134 (169)
408 cd03702 IF2_mtIF2_II This fami 97.5 0.00047 1E-08 59.3 8.5 77 325-406 2-79 (95)
409 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00038 8.2E-09 65.0 8.7 52 104-155 3-56 (141)
410 TIGR03596 GTPase_YlqF ribosome 97.5 0.00023 4.9E-09 74.5 7.9 57 23-99 117-173 (276)
411 cd01856 YlqF YlqF. Proteins o 97.5 0.00017 3.6E-09 69.8 6.3 57 23-99 114-170 (171)
412 PRK12289 GTPase RsgA; Reviewed 97.5 0.00042 9.1E-09 74.5 9.8 47 109-155 86-134 (352)
413 PRK12289 GTPase RsgA; Reviewed 97.5 0.00011 2.4E-09 79.0 5.2 64 26-102 174-237 (352)
414 TIGR02475 CobW cobalamin biosy 97.5 0.0014 3.1E-08 70.4 13.2 139 23-167 3-200 (341)
415 PRK12726 flagellar biosynthesi 97.5 0.00048 1.1E-08 73.7 9.3 129 22-154 204-355 (407)
416 PRK11537 putative GTP-binding 97.5 0.0011 2.4E-08 70.5 12.2 140 23-167 3-175 (318)
417 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00023 5.1E-09 74.8 6.7 59 23-101 120-178 (287)
418 TIGR00157 ribosome small subun 97.4 0.00034 7.4E-09 71.7 7.6 49 107-155 31-81 (245)
419 TIGR00959 ffh signal recogniti 97.4 0.0013 2.7E-08 72.6 12.2 143 24-171 99-267 (428)
420 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00019 4.2E-09 75.4 5.6 65 25-102 162-226 (287)
421 cd03703 aeIF5B_II aeIF5B_II: T 97.4 0.001 2.2E-08 58.3 9.0 80 326-405 3-93 (110)
422 KOG1534 Putative transcription 97.4 0.00026 5.6E-09 68.3 5.6 81 88-171 97-191 (273)
423 cd03111 CpaE_like This protein 97.4 0.0025 5.4E-08 56.4 11.5 59 90-150 44-106 (106)
424 PRK13796 GTPase YqeH; Provisio 97.4 0.00032 6.9E-09 76.3 6.8 61 24-100 160-221 (365)
425 PHA02518 ParA-like protein; Pr 97.4 0.002 4.4E-08 64.3 12.1 128 26-155 2-147 (211)
426 COG3640 CooC CO dehydrogenase 97.3 0.00089 1.9E-08 66.2 8.7 64 88-154 133-198 (255)
427 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00063 1.4E-08 71.5 8.2 47 109-155 75-123 (287)
428 COG0541 Ffh Signal recognition 97.3 0.017 3.6E-07 62.4 18.8 129 23-154 99-252 (451)
429 COG0523 Putative GTPases (G3E 97.3 0.0026 5.7E-08 67.5 12.7 127 24-157 1-161 (323)
430 PRK00098 GTPase RsgA; Reviewed 97.3 0.00074 1.6E-08 71.4 8.5 46 109-154 77-124 (298)
431 COG1161 Predicted GTPases [Gen 97.3 0.00028 6.2E-09 75.2 5.4 57 24-100 132-188 (322)
432 KOG1487 GTP-binding protein DR 97.3 0.00098 2.1E-08 66.3 8.5 85 25-127 60-151 (358)
433 PRK08099 bifunctional DNA-bind 97.3 0.001 2.2E-08 73.0 9.6 143 21-170 216-395 (399)
434 PF09547 Spore_IV_A: Stage IV 97.3 0.0013 2.9E-08 70.3 9.6 152 25-178 18-217 (492)
435 PRK12724 flagellar biosynthesi 97.2 0.00092 2E-08 72.7 8.6 129 24-154 223-372 (432)
436 PRK14721 flhF flagellar biosyn 97.2 0.0022 4.7E-08 70.4 11.5 131 22-155 189-340 (420)
437 TIGR01969 minD_arch cell divis 97.2 0.0055 1.2E-07 62.9 14.0 82 87-172 107-189 (251)
438 PF02492 cobW: CobW/HypB/UreG, 97.2 0.001 2.2E-08 64.8 8.0 128 25-157 1-157 (178)
439 TIGR03597 GTPase_YqeH ribosome 97.2 0.0013 2.9E-08 71.4 9.4 55 99-155 50-104 (360)
440 cd01859 MJ1464 MJ1464. This f 97.2 0.00056 1.2E-08 64.9 5.7 23 23-45 100-122 (156)
441 cd02117 NifH_like This family 97.2 0.0031 6.8E-08 63.2 11.3 85 87-174 115-206 (212)
442 PRK06731 flhF flagellar biosyn 97.2 0.003 6.5E-08 65.4 11.2 131 23-155 74-225 (270)
443 KOG2485 Conserved ATP/GTP bind 97.2 0.0006 1.3E-08 70.0 5.6 78 24-113 143-221 (335)
444 PRK00098 GTPase RsgA; Reviewed 97.1 0.00065 1.4E-08 71.8 6.2 21 25-45 165-185 (298)
445 PRK05703 flhF flagellar biosyn 97.1 0.0021 4.6E-08 71.2 10.2 129 24-154 221-370 (424)
446 TIGR01007 eps_fam capsular exo 97.1 0.0047 1E-07 61.5 11.8 68 87-155 126-194 (204)
447 KOG1491 Predicted GTP-binding 97.1 0.0017 3.6E-08 67.4 8.0 84 23-124 19-126 (391)
448 cd00066 G-alpha G protein alph 97.1 0.0012 2.7E-08 70.4 7.3 82 74-155 146-242 (317)
449 PRK12723 flagellar biosynthesi 97.0 0.008 1.7E-07 65.5 13.3 130 23-154 173-325 (388)
450 PRK13185 chlL protochlorophyll 97.0 0.0075 1.6E-07 62.9 12.6 81 87-173 116-201 (270)
451 COG1419 FlhF Flagellar GTP-bin 97.0 0.002 4.4E-08 69.1 8.2 126 23-155 202-352 (407)
452 PRK06995 flhF flagellar biosyn 97.0 0.0033 7.1E-08 70.1 10.2 129 23-154 255-404 (484)
453 PRK01889 GTPase RsgA; Reviewed 97.0 0.0028 6.1E-08 68.7 9.4 46 110-155 110-156 (356)
454 KOG1533 Predicted GTPase [Gene 97.0 0.00089 1.9E-08 65.8 4.8 129 27-155 5-177 (290)
455 KOG3859 Septins (P-loop GTPase 97.0 0.0041 8.9E-08 62.5 9.5 144 23-181 41-218 (406)
456 cd02032 Bchl_like This family 97.0 0.012 2.7E-07 61.1 13.7 80 88-173 115-199 (267)
457 smart00275 G_alpha G protein a 97.0 0.0023 4.9E-08 69.0 8.4 83 73-155 168-265 (342)
458 TIGR01968 minD_bact septum sit 96.9 0.01 2.2E-07 61.2 12.6 83 88-172 111-196 (261)
459 TIGR03371 cellulose_yhjQ cellu 96.9 0.011 2.3E-07 60.6 12.4 82 89-172 115-199 (246)
460 cd02042 ParA ParA and ParB of 96.9 0.0064 1.4E-07 53.3 9.2 72 27-125 2-74 (104)
461 PRK12288 GTPase RsgA; Reviewed 96.9 0.0052 1.1E-07 66.2 10.2 46 110-155 118-164 (347)
462 cd03701 IF2_IF5B_II IF2_IF5B_I 96.9 0.0059 1.3E-07 52.7 8.4 76 325-405 2-78 (95)
463 KOG0447 Dynamin-like GTP bindi 96.8 0.0087 1.9E-07 65.3 11.3 136 20-156 304-494 (980)
464 PRK14723 flhF flagellar biosyn 96.8 0.005 1.1E-07 71.9 10.2 130 24-155 185-337 (767)
465 KOG3887 Predicted small GTPase 96.8 0.014 3E-07 57.7 11.6 116 25-157 28-151 (347)
466 CHL00175 minD septum-site dete 96.8 0.025 5.5E-07 59.2 14.8 89 88-179 126-217 (281)
467 CHL00072 chlL photochlorophyll 96.8 0.014 3E-07 61.5 12.6 85 88-179 115-204 (290)
468 KOG4423 GTP-binding protein-li 96.8 0.00016 3.5E-09 68.2 -1.9 116 22-155 23-149 (229)
469 PRK13796 GTPase YqeH; Provisio 96.7 0.0078 1.7E-07 65.5 10.4 52 101-155 58-110 (365)
470 cd02040 NifH NifH gene encodes 96.6 0.016 3.5E-07 60.2 11.6 85 87-173 115-205 (270)
471 TIGR03815 CpaE_hom_Actino heli 96.6 0.045 9.7E-07 58.6 14.8 80 87-172 203-282 (322)
472 TIGR01281 DPOR_bchL light-inde 96.6 0.019 4.2E-07 59.7 11.6 82 87-174 114-200 (268)
473 PF14578 GTP_EFTU_D4: Elongati 96.6 0.022 4.8E-07 47.1 9.3 76 322-405 3-80 (81)
474 KOG2743 Cobalamin synthesis pr 96.5 0.0093 2E-07 60.8 8.4 30 18-47 51-80 (391)
475 PRK13232 nifH nitrogenase redu 96.5 0.016 3.5E-07 60.5 10.6 86 86-173 114-204 (273)
476 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.018 3.9E-07 49.0 9.2 75 27-131 2-77 (99)
477 TIGR03348 VI_IcmF type VI secr 96.5 0.0065 1.4E-07 75.9 8.6 117 23-155 110-257 (1169)
478 PF01656 CbiA: CobQ/CobB/MinD/ 96.5 0.0046 9.9E-08 60.7 5.9 80 88-169 94-177 (195)
479 PRK13230 nitrogenase reductase 96.4 0.029 6.2E-07 58.8 11.4 91 87-179 115-210 (279)
480 PF07015 VirC1: VirC1 protein; 96.4 0.034 7.4E-07 55.7 11.1 119 32-153 10-152 (231)
481 TIGR01287 nifH nitrogenase iro 96.3 0.027 5.8E-07 58.9 10.4 84 88-173 115-204 (275)
482 TIGR00257 IMPACT_YIGZ uncharac 96.2 0.067 1.5E-06 52.8 12.2 113 570-685 88-200 (204)
483 PRK13695 putative NTPase; Prov 96.2 0.011 2.3E-07 57.3 6.7 39 111-151 95-136 (174)
484 KOG1424 Predicted GTP-binding 96.2 0.0053 1.2E-07 67.0 4.9 73 24-116 314-386 (562)
485 PRK10818 cell division inhibit 96.2 0.079 1.7E-06 55.1 13.5 83 88-172 113-206 (270)
486 cd04178 Nucleostemin_like Nucl 96.1 0.0091 2E-07 57.7 5.7 42 114-155 1-44 (172)
487 PRK13869 plasmid-partitioning 96.1 0.04 8.6E-07 60.9 11.1 84 87-172 250-345 (405)
488 TIGR03453 partition_RepA plasm 96.1 0.047 1E-06 60.1 11.6 86 87-174 233-330 (387)
489 PRK14493 putative bifunctional 96.0 0.019 4.2E-07 59.6 7.8 23 25-47 2-24 (274)
490 PRK11568 hypothetical protein; 96.0 0.11 2.4E-06 51.3 12.5 111 570-685 88-200 (204)
491 COG0552 FtsY Signal recognitio 96.0 0.031 6.7E-07 58.6 8.9 126 23-153 138-296 (340)
492 KOG2484 GTPase [General functi 96.0 0.0052 1.1E-07 65.1 3.3 59 22-100 250-308 (435)
493 KOG0780 Signal recognition par 96.0 0.052 1.1E-06 57.5 10.5 125 25-154 102-253 (483)
494 COG1149 MinD superfamily P-loo 96.0 0.071 1.5E-06 54.2 11.1 77 89-171 164-240 (284)
495 PF06858 NOG1: Nucleolar GTP-b 95.9 0.028 6E-07 43.1 6.2 48 105-152 5-58 (58)
496 PHA02519 plasmid partition pro 95.9 0.096 2.1E-06 57.4 13.1 87 87-175 233-329 (387)
497 KOG4181 Uncharacterized conser 95.8 0.1 2.2E-06 54.5 11.8 23 23-45 187-209 (491)
498 COG0563 Adk Adenylate kinase a 95.8 0.016 3.4E-07 56.4 5.5 107 25-148 1-111 (178)
499 KOG2423 Nucleolar GTPase [Gene 95.7 0.012 2.5E-07 62.2 4.5 23 23-45 306-328 (572)
500 cd02035 ArsA ArsA ATPase funct 95.7 0.11 2.3E-06 52.3 11.5 67 89-155 114-184 (217)
No 1
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-141 Score=1198.81 Aligned_cols=686 Identities=64% Similarity=1.047 Sum_probs=657.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 99 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~ 99 (711)
.+++|||+|+||+|||||||+++|++++|.+++.|++.+|++++||+++|++|||||+++..++.|++ +.|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEec
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
.||..++.++++.+|++|+|+|+.+|+++||+.+|+++.++++|+++|+||||+..+++..++++++.+|+..+.++++|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
|+.++.|.|++|++.++++.|.. |......++|.+..+...++|..++|.+++.||+++|+|++|..++.+++.+.+
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999995 334444678888888889999999999999999999999999999999999999
Q ss_pred HhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCe
Q 005154 260 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 339 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 339 (711)
++.+..+.++|++|+||.+|.|++.|||++++++|+|.+.+...+...+.......+.++.++|++++|||+..+++.|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999998777764332223333366779999999999999999999
Q ss_pred EEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCCCC
Q 005154 340 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 419 (711)
Q Consensus 340 l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 419 (711)
++|+|||||+|++||.|+|.+.+++++|.+|+.|+|.+++++++++||||+++.|++++.+|||+|+.+.+..++.+.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988766788999999
Q ss_pred CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEe
Q 005154 420 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 499 (711)
Q Consensus 420 ~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrE 499 (711)
+|+++++|+|.+++|.+||.++|++|++|||+++++.|+||||++|+|||||||||+++||+++||+++.+++|+|+|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEE
Q 005154 500 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 579 (711)
Q Consensus 500 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~ 579 (711)
|+.+.+...++|++|+++++||+++++.++|++.+.++.|.+++.++.+|++|++++++||++++++|||+||||+|++|
T Consensus 484 Ti~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv 563 (697)
T COG0480 484 TIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKV 563 (697)
T ss_pred eecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEE
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCC-CeEEE
Q 005154 580 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVV 658 (711)
Q Consensus 580 ~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g-~~~~i 658 (711)
+|.|+++|++||++++|++|+++||++|+++|.|+||||||+|+|++|++|+|+|+++|++|||+|++++..+| .++.|
T Consensus 564 ~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i 643 (697)
T COG0480 564 TLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVI 643 (697)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854 56999
Q ss_pred EEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHHhh
Q 005154 659 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEV 709 (711)
Q Consensus 659 ~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~~ 709 (711)
+|++|++|||||+++|||+|+|+|.|+|+|+||++||.+.+++++++.+..
T Consensus 644 ~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~ 694 (697)
T COG0480 644 KAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKR 694 (697)
T ss_pred EEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999887653
No 2
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-143 Score=1137.27 Aligned_cols=682 Identities=55% Similarity=0.898 Sum_probs=651.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
.+.+++|||+|++|.|+||||+.+++++++|.+...+.++.+.+.+|+++.|++||||++++..++.|+++++|+|||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPG 113 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCC
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.||.-++++++++.|++|+|+|+..|++.||..+|++++++++|.+.|+|||||.++++..++++++.+|..+++.+|+
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|++.++.|+|++|++.+++++|+.++ |......++|+++.+.+.+.|++|+|++++.||+++|.||+++.++.+++..+
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~-g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~a 272 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGEN-GEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAA 272 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCC-CceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999764 66677799999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-CCCCcccccccccCCCC-CeEEEEEEEeecCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-DPENPEATLERAASDDE-PFAGLAFKIMSDPF 336 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-~~~~~~~~~~~~~~~~~-p~~~~V~k~~~~~~ 336 (711)
+|+.++.+.++||+||||++|.|+++|||++++|||+|.+...+... ..+++ +...+...+++ ||++++||+..+++
T Consensus 273 IRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~-ekv~l~~~~d~~Pfv~LAFKle~g~f 351 (721)
T KOG0465|consen 273 IRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSK-EKVTLSPSRDKDPFVALAFKLEEGRF 351 (721)
T ss_pred HHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCc-cceEeccCCCCCceeeeEEEeeecCc
Confidence 99999999999999999999999999999999999999998765544 21112 22333333344 99999999999999
Q ss_pred CCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCC-CCcccccc
Q 005154 337 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILLER 415 (711)
Q Consensus 337 ~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~-~~~~~l~~ 415 (711)
|.+.|+|||+|+|++||.|+|.++++++|+.+|+.||+++.++|+++.||||+++.|+ ++.+|||+++. .....++.
T Consensus 352 -GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m~s 429 (721)
T KOG0465|consen 352 -GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSMES 429 (721)
T ss_pred -cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999 79999999997 66788999
Q ss_pred CCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCcee
Q 005154 416 MDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQV 495 (711)
Q Consensus 416 ~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V 495 (711)
+.+|+||++++|+|.+..|.+++.+||.++.+|||++++..|.|+||++|+|||||||||..+||+++||+++.+++|+|
T Consensus 430 i~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~V 509 (721)
T KOG0465|consen 430 IHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQV 509 (721)
T ss_pred eecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCC--cEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCC
Q 005154 496 NYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG--YEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFP 573 (711)
Q Consensus 496 ~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~p 573 (711)
+|||||..++++.+.|+||+||.+|||.+.-.++|++.+.+ ++|.+++.|+.+|++|++++++||.++++.|||.|.|
T Consensus 510 ayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghp 589 (721)
T KOG0465|consen 510 AYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHP 589 (721)
T ss_pred eehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCc
Confidence 99999999999999999999999999999999999987654 6799999999999999999999999999999999999
Q ss_pred eeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCC
Q 005154 574 VVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG 653 (711)
Q Consensus 574 v~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g 653 (711)
+.|+++.|.||.+|.+||++.+|+.|++.|+++|+++|+|++|||||.|+|++|++++|.|+++|++|+|.|.+.+..+
T Consensus 590 l~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~- 668 (721)
T KOG0465|consen 590 LSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE- 668 (721)
T ss_pred ccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHH
Q 005154 654 GLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 705 (711)
Q Consensus 654 ~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~ 705 (711)
.+++|.|.+||.+||||+++|||+|+|+|.|+|+|++|+|++.+.|+.++.+
T Consensus 669 ~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 669 DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhcc
Confidence 8899999999999999999999999999999999999999999999988753
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.1e-132 Score=1153.66 Aligned_cols=689 Identities=67% Similarity=1.092 Sum_probs=654.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
.++.+++|||+|+||+|+|||||+++|++.+|.+...+.++.|++++|+.+.|++||+|+++....+.|+++.++|||||
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTP 83 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTP 83 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCC
Confidence 44677899999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|..++.++++.+|++|+|+|+.+|++.|++.+|+++.+.++|+++|+||+|+..+++.+.++++++.++..+.+.+
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
+|+++..+|.|++|++.+..+.|.....|..+...++|..+.+...++|.+|+|.+++.||++||+||+|..++++++++
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 99999999999999999999999754457777888888888888889999999999999999999999999999999999
Q ss_pred HHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 005154 258 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 337 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~ 337 (711)
.+++++..+.++||+|+||+++.|+++|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.++++.
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999987665433211112234567899999999999999999999
Q ss_pred CeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCC
Q 005154 338 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 417 (711)
Q Consensus 338 g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~ 417 (711)
|+++|+|||||+|++||+|++...++.++|.+|+.+.|.++.+++++.||||+++.|++++++||||++.+.+..++++.
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~ 403 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESME 403 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCC
Confidence 99999999999999999999988888899999999999999999999999999999999999999999887777788888
Q ss_pred CCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeE
Q 005154 418 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 497 (711)
Q Consensus 418 ~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~y 497 (711)
+++|+++++|+|.++.|.++|.++|++|+++||+|+|..|++|||++|+|+||||||++++||+++|++++++++|+|+|
T Consensus 404 ~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~y 483 (693)
T PRK00007 404 FPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAY 483 (693)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEE
Q 005154 498 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 577 (711)
Q Consensus 498 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 577 (711)
||||.+.++..++|++++++++||+.++++++|++.+.++.|.+++.++.+|++|++||++||++|+++||||||||+||
T Consensus 484 rETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v 563 (693)
T PRK00007 484 RETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDV 563 (693)
T ss_pred eecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeE
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEE
Q 005154 578 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 657 (711)
Q Consensus 578 ~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~ 657 (711)
+|+|+|+.+|++|+++++|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+ +.+.
T Consensus 564 ~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~ 642 (693)
T PRK00007 564 KVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG-GAKV 642 (693)
T ss_pred EEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC-CcEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766 5789
Q ss_pred EEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHH
Q 005154 658 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 707 (711)
Q Consensus 658 i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 707 (711)
|+|.+|++|+|||+++||++|+|+|+|+++|+||++||++.+++++++..
T Consensus 643 i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 643 IRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred EEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998753
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=3.3e-131 Score=1146.07 Aligned_cols=687 Identities=67% Similarity=1.097 Sum_probs=653.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
++.+++|||+|+||+|+|||||+++|++.+|.+.+.+.++.|++++|+.+.|++||+|+++....+.|+++.++||||||
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG 82 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPG 82 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCC
Confidence 35678999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.+|..++.++++.+|++|+|||+.+|++.|++.+|+++.+.++|+++|+||+|+..+++.+.++++++.++....+.++
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 162 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQL 162 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|+++..+|.|++|+..+..+.|.....|..+...++|..+.+...++|.+|+|.+++.||+++|+||++..++.+++++.
T Consensus 163 Pis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~ 242 (691)
T PRK12739 163 PIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAA 242 (691)
T ss_pred cccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999997654566678888898888888899999999999999999999999999999999999
Q ss_pred HHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 338 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 338 (711)
+++....+.++||+++||+++.|++.|||+|++++|+|.+++..++...+.. ....+.|++++|++++|||+.++++.|
T Consensus 243 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G 321 (691)
T PRK12739 243 IRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTE-EEIERPASDDEPFAALAFKIMTDPFVG 321 (691)
T ss_pred HHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCC-cceeeccCCCCCeEEEEEEeeeCCCCC
Confidence 9999999999999999999999999999999999999988665444322111 345678999999999999999999999
Q ss_pred eEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCCC
Q 005154 339 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 418 (711)
Q Consensus 339 ~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 418 (711)
+++|+|||||+|++||.|++...++++++.+|+.++|++..+++++.||||++|.|++++++||||++.+.+..++++.+
T Consensus 322 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~ 401 (691)
T PRK12739 322 RLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEF 401 (691)
T ss_pred eEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999998877778888999
Q ss_pred CCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEE
Q 005154 419 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 498 (711)
Q Consensus 419 ~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yr 498 (711)
++|+++++|+|.++.|.++|.++|++|+++||+|++++|++|||++|+|+||||||++++||+++|++++++++|.|+||
T Consensus 402 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yr 481 (691)
T PRK12739 402 PEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 481 (691)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEE
Q 005154 499 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVR 578 (711)
Q Consensus 499 Eti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~ 578 (711)
|||.+.++..++|++|+++++||+.++++++|++.+.++.|.+++.++.+|++|++||++||+||+++||||||||+||+
T Consensus 482 Eti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~ 561 (691)
T PRK12739 482 ETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVK 561 (691)
T ss_pred eccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEE
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEE
Q 005154 579 AALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVV 658 (711)
Q Consensus 579 ~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i 658 (711)
|+|.++.+|++++++++|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+ +.+.|
T Consensus 562 v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~i 640 (691)
T PRK12739 562 ATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARG-GAQIV 640 (691)
T ss_pred EEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccC-CcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 56789
Q ss_pred EEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHH
Q 005154 659 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 707 (711)
Q Consensus 659 ~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 707 (711)
+|.+|++|+|||+++||++|+|+|+|+++|+||++||++.+++++++..
T Consensus 641 ~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (691)
T PRK12739 641 KAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRK 689 (691)
T ss_pred EEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998753
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4.4e-130 Score=1137.65 Aligned_cols=686 Identities=62% Similarity=1.017 Sum_probs=652.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
+.++++++|||+|+||+|+|||||+|+|++.+|.+.+.+.+.+|++++|+.+.|++||+|+++....+.|+++.++||||
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 34567889999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEE
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 176 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~ 176 (711)
|||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+++.+.++|+++|+||+|+..+++.+.++++++.++....+.
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 162 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPI 162 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHH
Q 005154 177 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 256 (711)
Q Consensus 177 ~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~ 256 (711)
++|+++..+|.|++|++.++.++|++. .++.+...++++++.+.+.++|++|+|++++.||++||+|++|+.++.+++.
T Consensus 163 ~ipis~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 163 QLPIGAEDNFIGVIDLVEMKAYFFNGD-KGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EeccccCCCceEEEECccceEEecccC-CCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 999999999999999999999999753 6888888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 005154 257 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 336 (711)
Q Consensus 257 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 336 (711)
+.+++++..+.++||++|||++|.|+++|||+|+.++|+|.+++...+...+ ......+.|++++|++++|||+.++++
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~~~~l~a~VfK~~~d~~ 320 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPD-TEKEIERKASDDEPFSALAFKVATDPF 320 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCC-CCceeeecCCCCCceEEEEEEeeecCC
Confidence 9999999999999999999999999999999999999999876543332111 122445788999999999999999999
Q ss_pred CCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccC
Q 005154 337 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM 416 (711)
Q Consensus 337 ~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~ 416 (711)
.|+++|+|||||+|++||+|++...++++++.+|+.++|++..+++++.||||++|.|++++++||||++.+.+..++++
T Consensus 321 ~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~ 400 (689)
T TIGR00484 321 VGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERM 400 (689)
T ss_pred CCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCC
Confidence 99999999999999999999998888889999999999999999999999999999999999999999988777778888
Q ss_pred CCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceee
Q 005154 417 DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 496 (711)
Q Consensus 417 ~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~ 496 (711)
.+++|+++++|+|.++.|.++|.++|++|+++||+|++.+|++|||++|+||||||||++++||+++||+++++++|+|+
T Consensus 401 ~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~ 480 (689)
T TIGR00484 401 EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVA 480 (689)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeE
Q 005154 497 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 576 (711)
Q Consensus 497 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 576 (711)
|||||.+.++..++|++++++++||++|+++++|++.+ ++.|.+++.++.+|++|++||++||+||+++||||||||+|
T Consensus 481 yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~ 559 (689)
T TIGR00484 481 YRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVD 559 (689)
T ss_pred EeecccCccccccccccccCCCCceEEEEEEEEECCCC-CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceee
Confidence 99999999888899999999999999999999999875 89999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeE
Q 005154 577 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLK 656 (711)
Q Consensus 577 v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~ 656 (711)
|+|+|+++.+|++++++++|++|+++||++|+++|+|+||||||+++|+||++++|+|+++|++|||+|.++++.+ +.+
T Consensus 560 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~-~~~ 638 (689)
T TIGR00484 560 IKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG-NVQ 638 (689)
T ss_pred EEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC-CcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998866 679
Q ss_pred EEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHH
Q 005154 657 VVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 706 (711)
Q Consensus 657 ~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 706 (711)
.|+|++|++|+|||+++||++|+|+|+|+++|+||++||++++++|++++
T Consensus 639 ~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 639 KIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred EEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999864
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.7e-126 Score=1110.91 Aligned_cols=684 Identities=53% Similarity=0.921 Sum_probs=647.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
++.+++|||+|+||+|+|||||+++|++.+|.+...+.++.|++.+|+.+.|+++|+|+.+....+.|+++.++||||||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence 45678999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.+|..++..+++.+|++++|+|+++++..++..+|+.+...++|+++|+||+|+.++++.++++++++.|+..+.++++
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|++.+..|.|++|++.++++.|.....+..+...++|..+.+...++|.+++|.+++.||+++|+|+++..++.++++..
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 99999999999999999999997654566677788888888888999999999999999999999999999999999999
Q ss_pred HHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 338 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 338 (711)
+++++..+.++|||+|||++|.|++.|||+|++++|+|.+++..+... .......+.|++++|++++|||+.++++.|
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G 320 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAG 320 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCc
Confidence 999999999999999999999999999999999999998765433321 011123467899999999999999999999
Q ss_pred eEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCCC
Q 005154 339 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 418 (711)
Q Consensus 339 ~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 418 (711)
+++|+|||||+|++||+|++.+.++.+++.+|+.++|.+..+++++.||||+++.|++++.+||||++.+.+..++++.+
T Consensus 321 ~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 400 (687)
T PRK13351 321 KLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTF 400 (687)
T ss_pred eEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999998776667778889
Q ss_pred CCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEE
Q 005154 419 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 498 (711)
Q Consensus 419 ~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yr 498 (711)
|+|+++++|+|.++.|.++|.++|++|+++||+|+++.+++|||++|+|+||||||++++||+++|++++++++|.|+||
T Consensus 401 ~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~ 480 (687)
T PRK13351 401 PEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYR 480 (687)
T ss_pred CCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEE
Q 005154 499 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVR 578 (711)
Q Consensus 499 Eti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~ 578 (711)
|||.+.++..++|++++++++||++++++++|++++.|+.|.+.+.++.+|++|++||++||++|+++||||||||+||+
T Consensus 481 Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~ 560 (687)
T PRK13351 481 ETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLR 560 (687)
T ss_pred eeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEE
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEE
Q 005154 579 AALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVV 658 (711)
Q Consensus 579 ~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i 658 (711)
|+|+++.+|++++++++|++|+++||++|+++|+|+||||||+++|+||++++|+|+++|++|||+|+++++.+++...|
T Consensus 561 v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i 640 (687)
T PRK13351 561 VTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLV 640 (687)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876454559
Q ss_pred EEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHH
Q 005154 659 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAA 704 (711)
Q Consensus 659 ~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 704 (711)
+|.+|++|+|||+++||++|+|+|+|+++|+||++||++++++++.
T Consensus 641 ~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 641 KAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998874
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=9.3e-120 Score=1053.17 Aligned_cols=668 Identities=57% Similarity=0.944 Sum_probs=632.8
Q ss_pred EcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHH
Q 005154 30 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 109 (711)
Q Consensus 30 vG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~ 109 (711)
+||+|||||||+++|++.+|.+...+.++.|.+++|+.+.|++||+|+......+.|+++.++|||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999999998888888889999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCCCCceee
Q 005154 110 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 189 (711)
Q Consensus 110 l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~ 189 (711)
++.+|++++|+|++.+...++..+|+.+...++|+++|+||+|+...+..+.++++++.++....+.++|+..+..|.|+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred eecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcce
Q 005154 190 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 269 (711)
Q Consensus 190 vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~ 269 (711)
+|++.++.++|+. +..+...+.+....+....+|..++|.+++.||+++|+|+++..++.++++..+++.+..+.++
T Consensus 161 id~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYDE---GGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEecC---CCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999983 5566677778877788888999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeE
Q 005154 270 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 349 (711)
Q Consensus 270 Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~ 349 (711)
||+++||++|.|++.||++|++++|+|.+++...+. .........|++++|++++|||+.++++.|+++|+|||||+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~---~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGE---DGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCC---CCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 999999999999999999999999999865432211 11123346789999999999999999999999999999999
Q ss_pred eCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCCCCCCeEEEEEEe
Q 005154 350 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 429 (711)
Q Consensus 350 l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~pv~~~~iep 429 (711)
|++||+|++.+.++++++.+|+.++|++.++++++.||||+++.|++.+.+||||++.+.+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999998888899999999999999999999999999999999999999999877777788889999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEeeecccceeEE
Q 005154 430 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKY 509 (711)
Q Consensus 430 ~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrEti~~~~~~~~ 509 (711)
.++.|.++|.++|++|+++||+|++..|+++||++++|+||||||++++||+++|++++.+++|+|+|||||.++++..+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~ 474 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHG 474 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccc
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999988889
Q ss_pred EEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCC
Q 005154 510 VHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV 589 (711)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~ 589 (711)
+|+++++++++|++|+++++|++.+.++.|.+++.++.+|++|++||++||++|+++|||||||++||+|+|+++.+|++
T Consensus 475 ~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 475 RHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred eeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhh
Q 005154 590 DSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQ 669 (711)
Q Consensus 590 ~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g 669 (711)
++++++|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+++ +.|+|++|++|+||
T Consensus 555 ~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~i~a~~P~~e~~g 633 (668)
T PRK12740 555 DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG-DVVRAEVPLAEMFG 633 (668)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC-EEEEEEcCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999987644 99999999999999
Q ss_pred hHHHhhhccCceEEEEEEeCccccCCchHHHHHHH
Q 005154 670 YVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAA 704 (711)
Q Consensus 670 ~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 704 (711)
|+++||++|+|+|+|+++|+||+++++++++++++
T Consensus 634 ~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~~ 668 (668)
T PRK12740 634 YATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVIA 668 (668)
T ss_pred hHHHHHHhcCCeEEEEEEecccccCCHHHHHHHhC
Confidence 99999999999999999999999999999888863
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=9.9e-116 Score=1031.20 Aligned_cols=665 Identities=28% Similarity=0.403 Sum_probs=569.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec------------
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------ 87 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~------------ 87 (711)
.++++|||||+||+|||||||+++|++.+|.+... ...+++++|+.+.|++||+|++++.+++.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 46789999999999999999999999999987663 3445677999999999999999999999884
Q ss_pred ----CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC-------C-
Q 005154 88 ----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G- 155 (711)
Q Consensus 88 ----~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~-------~- 155 (711)
++.+||||||||.||..++.++++.+|++|+|||+.+|++.||+.+|+++...++|+++|+||||+. .
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~ 172 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ---ccHHHHHHHHHH---HhCCcce-EEEe-ccCCC----------------------CCceeeeecccceEE---eecC
Q 005154 156 ---ANFFRTRDMIVT---NLGAKPL-VVQL-PVGAE----------------------DNFKGVVDLVKMKAI---IWSG 202 (711)
Q Consensus 156 ---~~~~~~~~~l~~---~l~~~~~-~~~~-p~~~~----------------------~~~~g~vd~~~~~~~---~~~~ 202 (711)
+++.+++++++. .++.... ++++ |++.+ .+|.+.+|.+..+.| +|+.
T Consensus 173 ~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~ 252 (843)
T PLN00116 173 EAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcC
Confidence 567888888882 2221111 2334 55443 223333444444444 5543
Q ss_pred cCCCceeeeec--ccHh---HHHHHHHHHHHHHHHHhccCHHHHHHHhcC--CCCCHHHHHHHHHhhhhcCcceeeeecc
Q 005154 203 EELGAKFAYED--IPAN---LQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCGS 275 (711)
Q Consensus 203 ~~~g~~~~~~~--~~~~---~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~--~~~~~~~~~~~l~~~~~~~~~~Pv~~~S 275 (711)
. +..+...+ .+.. +.+.+.+.+.++++.+++.||+++++|+++ ..++.++++. +++.+.+..+.|+|++|
T Consensus 253 ~--~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s 329 (843)
T PLN00116 253 A--TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS 329 (843)
T ss_pred C--CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh
Confidence 2 33343333 2222 222334689999999999999999999997 5799999988 88888889999999876
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCCe-EEEEEEEeeE
Q 005154 276 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGT 349 (711)
Q Consensus 276 a~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~-l~~~RV~sG~ 349 (711)
+.|||+|++++|+|.+++..+.. ..+.+.......|++++|++++|||+..+++.|. ++|+|||||+
T Consensus 330 -------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGt 402 (843)
T PLN00116 330 -------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGT 402 (843)
T ss_pred -------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeee
Confidence 78999999999999865432211 1112223456889999999999999999888787 9999999999
Q ss_pred eCCCCEEE----eCCCCce-----eecceeEEeccCceeecCeeecCCEEEEeCCCcccc-CccccCCC--CccccccCC
Q 005154 350 LSAGSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERMD 417 (711)
Q Consensus 350 l~~gd~v~----~~~~~~~-----~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-Gdtl~~~~--~~~~l~~~~ 417 (711)
|++||.|+ +...+++ ++|.+|+.++|++.++++++.||||++|.|+++..+ ||||++.. .+..++++.
T Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~ 482 (843)
T PLN00116 403 VATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMK 482 (843)
T ss_pred ecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccc
Confidence 99999998 4444333 489999999999999999999999999999988644 99998876 566778888
Q ss_pred CC-CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc--CeEEEEeCce
Q 005154 418 FP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KVEANVGAPQ 494 (711)
Q Consensus 418 ~~-~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~--~v~~~~~~p~ 494 (711)
++ +|+++++|+|.++.|.++|.+||++|+++||+|++.. ++|||++|+||||||||++++||+++| ++++++|+|+
T Consensus 483 ~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~ 561 (843)
T PLN00116 483 FSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPV 561 (843)
T ss_pred cCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCe
Confidence 88 9999999999999999999999999999999999965 899999999999999999999999999 9999999999
Q ss_pred eeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCC----------------------------------------
Q 005154 495 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG---------------------------------------- 534 (711)
Q Consensus 495 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---------------------------------------- 534 (711)
|+|||||.++++..+++ ++ .++|++++++++|++++
T Consensus 562 V~yrETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
T PLN00116 562 VSFRETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCF 637 (843)
T ss_pred EEEEecccccccCcEEE-ec---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeee
Confidence 99999999998777663 34 56789999999998764
Q ss_pred -----CCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccC--CCCCHHHHHHHHHHHHHHH
Q 005154 535 -----SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREG 607 (711)
Q Consensus 535 -----~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~--~~s~~~~~~~a~~~~~~~a 607 (711)
.++.|++++.+..+.+++++||++||++|+++||||||||+||+|+|.++++|+ .++.+++|++|+++||++|
T Consensus 638 gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~A 717 (843)
T PLN00116 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYAS 717 (843)
T ss_pred cCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHH
Confidence 128888988887777888899999999999999999999999999999999998 4566789999999999999
Q ss_pred HHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCC-eEEEEEEechhHHhhhHHHhhhccCceEEEEE
Q 005154 608 MRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIM 686 (711)
Q Consensus 608 ~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~-~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~ 686 (711)
+++|+|+||||||+++|+||++++|+|+++|++|||+|+++++.+|+ .+.|+|++|++|||||+++||++|+|+|+|+|
T Consensus 718 l~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~ 797 (843)
T PLN00116 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
T ss_pred HHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEE
Confidence 99999999999999999999999999999999999999999987654 48999999999999999999999999999999
Q ss_pred EeCccccCCchHHHH
Q 005154 687 QLAKFDVVPQHIQNQ 701 (711)
Q Consensus 687 ~f~~y~~v~~~~~~~ 701 (711)
+|+||++||+++.++
T Consensus 798 ~f~~y~~v~~dp~~~ 812 (843)
T PLN00116 798 VFDHWDMMSSDPLEA 812 (843)
T ss_pred EeceeEECCCCCCCc
Confidence 999999999887653
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.1e-114 Score=1020.00 Aligned_cols=658 Identities=29% Similarity=0.470 Sum_probs=569.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCC-CccccchhhhhhcCceeeeeeEEEEec----------Ce
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYWN----------KH 89 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g-~~~~d~~~~e~~~giti~~~~~~~~~~----------~~ 89 (711)
++++|||+|+||+|||||||+++|++.+|.+++. ..| ++++|+.+.|++||+|++++...+.|. ++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPF 92 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCce
Confidence 5779999999999999999999999999987653 333 456999999999999999999998886 78
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC----C-------ccH
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------ANF 158 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~----~-------~~~ 158 (711)
.++|+|||||.||..++.++++.+|++|+|+|+.+|++.||+.+|+++...++|+++|+||||+. + +++
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~ 172 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNF 172 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 4 678
Q ss_pred HHHHHHHHHHhC-----------CcceEEEeccCCCC--------Cceee--------eecccceEE---eecCcCCCce
Q 005154 159 FRTRDMIVTNLG-----------AKPLVVQLPVGAED--------NFKGV--------VDLVKMKAI---IWSGEELGAK 208 (711)
Q Consensus 159 ~~~~~~l~~~l~-----------~~~~~~~~p~~~~~--------~~~g~--------vd~~~~~~~---~~~~~~~g~~ 208 (711)
.+++++++..++ ..+.+.++|++... .|.++ ++.+....| +|++. +..
T Consensus 173 ~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~--~~~ 250 (836)
T PTZ00416 173 VKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK--TKK 250 (836)
T ss_pred HHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC--CCE
Confidence 899999998765 36778889987655 24443 344444444 45432 444
Q ss_pred eeeec-------ccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhc--CCCCCHHHH--HH-HHHhhhhcCcceeeeeccc
Q 005154 209 FAYED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGSA 276 (711)
Q Consensus 209 ~~~~~-------~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~--~~~~~~~~~--~~-~l~~~~~~~~~~Pv~~~Sa 276 (711)
+...+ .+..+.+.+.+.|+++++.+++.||+++++|++ +..++++++ .. .+.+... +.|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv----- 324 (836)
T PTZ00416 251 WIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA----- 324 (836)
T ss_pred EEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch-----
Confidence 44333 334456777889999999999999999999999 678888884 22 4555555 789997
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCCe-EEEEEEEeeEe
Q 005154 277 FKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGTL 350 (711)
Q Consensus 277 ~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~-l~~~RV~sG~l 350 (711)
++.|||+|++++|+|.+++..+.. ..+.......+.|++++|++++|||+..+++.|+ ++|+|||||+|
T Consensus 325 -----~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL 399 (836)
T PTZ00416 325 -----ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTV 399 (836)
T ss_pred -----HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeee
Confidence 589999999999999875543210 1111223456789999999999999999999898 89999999999
Q ss_pred CCCCEEE----eCCCCcee-----ecceeEEeccCceeecCeeecCCEEEEeCCCc--cccCccccCCCCccccccCCCC
Q 005154 351 SAGSYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDFP 419 (711)
Q Consensus 351 ~~gd~v~----~~~~~~~~-----~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~~ 419 (711)
+.||+|+ +...+.++ +|++|+.++|++..+++++.||||++|.|+++ +++| ||++...+..+.++.++
T Consensus 400 ~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~ 478 (836)
T PTZ00416 400 ATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYS 478 (836)
T ss_pred cCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccC
Confidence 9999998 44443344 49999999999999999999999999999998 7899 99988777778888886
Q ss_pred -CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CeEEEEeCceeeE
Q 005154 420 -DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVNY 497 (711)
Q Consensus 420 -~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~-~v~~~~~~p~V~y 497 (711)
+|+++++|+|.+++|.++|.++|++|+++||+|.++. ++|||++|+||||+|||+|++||+++| ++++++|+|+|+|
T Consensus 479 ~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~y 557 (836)
T PTZ00416 479 VSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSY 557 (836)
T ss_pred CCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEE
Confidence 9999999999999999999999999999999999976 789999999999999999999999999 9999999999999
Q ss_pred EeeecccceeEEEEEeecCCCcceEEEEEEEeeccCC------------------------CCcE-----------EEec
Q 005154 498 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------SGYE-----------FKSE 542 (711)
Q Consensus 498 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------~~~~-----------~~~~ 542 (711)
||||.+.++..++|+++++++ +++++++|++++ .++. |..+
T Consensus 558 rETI~~~s~~~~~~~~~~~~~----~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~ 633 (836)
T PTZ00416 558 RETVTEESSQTCLSKSPNKHN----RLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPE 633 (836)
T ss_pred EEEecccccceEEEECCCCCe----eEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCC
Confidence 999999999999999986653 899999998765 1333 5555
Q ss_pred ccCCcC------ccccHH----HHHHHHHHHHHcCcccCCCeeEEEEEEEeccccC--CCCCHHHHHHHHHHHHHHHHHH
Q 005154 543 IKGGAV------PKEYIP----GVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREGMRK 610 (711)
Q Consensus 543 ~~~~~~------~~~~~~----~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~--~~s~~~~~~~a~~~~~~~a~~~ 610 (711)
+.|+.+ +++|++ ||++||+||+++||||||||+||+|+|+++++|+ .+++.++|++|+++||++|+++
T Consensus 634 ~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~ 713 (836)
T PTZ00416 634 NKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELT 713 (836)
T ss_pred CCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhh
Confidence 566655 555555 9999999999999999999999999999999998 7788999999999999999999
Q ss_pred cCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCe-EEEEEEechhHHhhhHHHhhhccCceEEEEEEeC
Q 005154 611 AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLA 689 (711)
Q Consensus 611 a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~ 689 (711)
|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+|+. +.|+|++|++|+|||+++||++|+|+|+|+|+|+
T Consensus 714 a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~ 793 (836)
T PTZ00416 714 ASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFD 793 (836)
T ss_pred CCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEec
Confidence 999999999999999999999999999999999999999877554 8999999999999999999999999999999999
Q ss_pred ccccCCchHHH
Q 005154 690 KFDVVPQHIQN 700 (711)
Q Consensus 690 ~y~~v~~~~~~ 700 (711)
||++||+++++
T Consensus 794 ~y~~vp~dp~~ 804 (836)
T PTZ00416 794 HWQVVPGDPLE 804 (836)
T ss_pred cEEECCCCCCC
Confidence 99999988754
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=9.3e-112 Score=984.92 Aligned_cols=632 Identities=32% Similarity=0.474 Sum_probs=546.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEE----EEecCeeEEEEeC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT----TYWNKHRINIIDT 96 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~----~~~~~~~i~liDt 96 (711)
++++|||+++||.|||||||+++|++.+|.+++. ...+++++|+.+.|++||+|+.++..+ +.|+++.++||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT 93 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT 93 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence 4569999999999999999999999999987663 233456799999999999999988766 5678899999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEE
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 176 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~ 176 (711)
|||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|.++|+||+|+..+++....+++++.|+.....+
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v 173 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEV 173 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999998887543333
Q ss_pred EeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhc---------C
Q 005154 177 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE---------G 247 (711)
Q Consensus 177 ~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~---------~ 247 (711)
+.++... .+++ ++..+.+..++.++.+++.|++ +
T Consensus 174 ~~~~~~~------------------------------~~~~-------~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~ 216 (720)
T TIGR00490 174 NKLIKAM------------------------------APEE-------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMKK 216 (720)
T ss_pred Hhhhhcc------------------------------CCHH-------HhhceEechhhCCHHHHhhhhcccccchhHhh
Confidence 2222110 0000 0011223334455556666655 4
Q ss_pred CCCCHHHHHHHHHhhhhcC--cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCC
Q 005154 248 NEPDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASD 320 (711)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~--~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~ 320 (711)
..++.+++.+.+....... .++|+ ++.|||+|++++|+|.+++..+.. ..+++.....+.|++
T Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 286 (720)
T TIGR00490 217 TGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDP 286 (720)
T ss_pred cCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCC
Confidence 4455566655554433333 57788 379999999999999875432211 111122245678999
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcccc
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 400 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 400 (711)
++|++++|||+..+++.|+++|+|||||+|++||+|++.+.++.++|++|+.++|.+..+++++.||||++|.|++++.+
T Consensus 287 ~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 366 (720)
T TIGR00490 287 KGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVA 366 (720)
T ss_pred CCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCc-cccccC-CCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHH
Q 005154 401 GETLCDADHP-ILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 478 (711)
Q Consensus 401 Gdtl~~~~~~-~~l~~~-~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~ 478 (711)
||||++.+.+ ..++++ .+|+|+++++|+|.++.|.++|.++|++|+++||+|++++|++|||++|+||||||||++++
T Consensus 367 GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~ 446 (720)
T TIGR00490 367 GETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVE 446 (720)
T ss_pred CceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHH
Confidence 9999987644 345655 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCeEEEEeCceeeEEeeecccce-eEEEEEeecCCCcceEEEEEEEeeccCC-----------------------
Q 005154 479 RLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAG----------------------- 534 (711)
Q Consensus 479 ~L~~~~~v~~~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~----------------------- 534 (711)
||+++||+++.+++|+|+|||||.+.++ .+++| .++|++++++++|++++
T Consensus 447 rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (720)
T TIGR00490 447 KIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRL 520 (720)
T ss_pred HHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHH
Confidence 9999999999999999999999999877 45554 34789999999999876
Q ss_pred ------------------CCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccC--CCCCHH
Q 005154 535 ------------------SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVL 594 (711)
Q Consensus 535 ------------------~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~--~~s~~~ 594 (711)
.+|.|++++.|+.+|++|++||++||+||+++||||||||+||+|+|+|+++|+ +||+++
T Consensus 521 ~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~ 600 (720)
T TIGR00490 521 LIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPA 600 (720)
T ss_pred HHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccc
Confidence 689999999999999999999999999999999999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHh
Q 005154 595 AFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSAL 674 (711)
Q Consensus 595 ~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~L 674 (711)
+|++|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ +.+.|+|++|++|||||+++|
T Consensus 601 ~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~I~A~vP~~e~fgy~~~L 679 (720)
T TIGR00490 601 QVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG-DMVTIIAKAPVAEMFGFAGAI 679 (720)
T ss_pred hHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC-CcEEEEEEEehHHhcCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999987654 679999999999999999999
Q ss_pred hhccCceEEEEEEeCccccCCchHHHHHHHHHHh
Q 005154 675 RGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 708 (711)
Q Consensus 675 r~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~ 708 (711)
|++|+|+|+|+|+|+||++||++.+++++++.|.
T Consensus 680 rs~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~ 713 (720)
T TIGR00490 680 RGATSGRCLWSTEHAGFELVPQNLQQEFVMEVRK 713 (720)
T ss_pred HhhCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999977553
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1e-110 Score=979.00 Aligned_cols=618 Identities=33% Similarity=0.494 Sum_probs=528.4
Q ss_pred hccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----
Q 005154 11 RHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---- 86 (711)
Q Consensus 11 ~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---- 86 (711)
.++...+. .++++|||+|+||+|||||||+++|++.+|.+.+. ...+++++|+.+.|++||+|++++..++.|
T Consensus 8 ~~~~~~~~-~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~ 84 (731)
T PRK07560 8 EKILELMK-NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEG 84 (731)
T ss_pred HHHHHHhh-chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecC
Confidence 33333333 35789999999999999999999999999987763 234467899999999999999999998887
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 166 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~ 166 (711)
+++.++|||||||.||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+++|+||+|+..+++....++++
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~ 164 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQ 164 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999887666666655
Q ss_pred HHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhc
Q 005154 167 TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE 246 (711)
Q Consensus 167 ~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~ 246 (711)
++++.. +.+.+ .++++|.+
T Consensus 165 ~~~~~~------------------------------------------------------------~~e~~-~~l~~~~~ 183 (731)
T PRK07560 165 QRLLKI------------------------------------------------------------IKDVN-KLIKGMAP 183 (731)
T ss_pred HHHHHH------------------------------------------------------------HHHHH-HHHHHhhh
Confidence 544310 01111 22222221
Q ss_pred CCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH----------------------------------HHHHHHHHh
Q 005154 247 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ----------------------------------PLLDAVVDY 292 (711)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~----------------------------------~Ll~~i~~~ 292 (711)
. ++...+...... -.|+++||+.+.|+. .|||+|+++
T Consensus 184 ~------~~~~~~~~~~~~---~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~ 254 (731)
T PRK07560 184 E------EFKEKWKVDVED---GTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKH 254 (731)
T ss_pred h------hhhcceeecCCC---CcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHh
Confidence 0 000000000000 113445555554443 899999999
Q ss_pred CCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeec
Q 005154 293 LPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERI 367 (711)
Q Consensus 293 lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v 367 (711)
+|+|.++++.+.. ...++.....+.|++++|++++|||+.++++.|+++|+|||||+|++||.|++.+.+.+++|
T Consensus 255 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v 334 (731)
T PRK07560 255 LPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRV 334 (731)
T ss_pred CCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEe
Confidence 9999875542211 11111223457789999999999999999999999999999999999999999998888999
Q ss_pred ceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccC-CCCCCeEEEEEEeCCCcCHHHHHHHHHHHH
Q 005154 368 GRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLA 446 (711)
Q Consensus 368 ~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~-~~~~pv~~~~iep~~~~d~~~L~~~L~~l~ 446 (711)
++|+.++|++..+++++.||||++|.|++++.+||||++......+.++ .+|+|+++++|+|.++.|.++|.++|++|+
T Consensus 335 ~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~ 414 (731)
T PRK07560 335 QQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLA 414 (731)
T ss_pred heehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777777786 488999999999999999999999999999
Q ss_pred hcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEeeecccce-eEEEEEeecCCCcceEEEE
Q 005154 447 QEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADIT 525 (711)
Q Consensus 447 ~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~ 525 (711)
++||+|++..|++|||++|+|+||||||++++||+++|++++.+++|+|+|||||.+.+. ..++ ++ ++|++++
T Consensus 415 ~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~ 488 (731)
T PRK07560 415 KEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFY 488 (731)
T ss_pred hhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEE
Confidence 999999999999999999999999999999999999999999999999999999998874 3322 22 3578999
Q ss_pred EEEeeccCCC-------------------------------------------CcEEEecccCCcCccccHHHHHHHHHH
Q 005154 526 VRFEPMEAGS-------------------------------------------GYEFKSEIKGGAVPKEYIPGVMKGLEE 562 (711)
Q Consensus 526 ~~~~P~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~i~~g~~~ 562 (711)
++++|++++. +|+|++++.++.+|++|+++|++||+|
T Consensus 489 l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~ 568 (731)
T PRK07560 489 ISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFRE 568 (731)
T ss_pred EEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHH
Confidence 9999997652 789999999999999999999999999
Q ss_pred HHHcCcccCCCeeEEEEEEEecccc--CCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhc
Q 005154 563 CMSNGVLAGFPVVDVRAALVDGSYH--DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNS 640 (711)
Q Consensus 563 a~~~Gpl~g~pv~~v~~~l~~~~~~--~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~ 640 (711)
|+++||||||||+||+|+|.|+++| ..++++++|++|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++
T Consensus 569 a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~ 648 (731)
T PRK07560 569 AMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQG 648 (731)
T ss_pred HHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHh
Confidence 9999999999999999999999999 45677899999999999999999999999999999999999999999999999
Q ss_pred CCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHHh
Q 005154 641 RRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 708 (711)
Q Consensus 641 rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~ 708 (711)
|||+|++++..+ +.+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||++.+++++++.|.
T Consensus 649 rrg~i~~~~~~~-~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~ 715 (731)
T PRK07560 649 RRGKILDMEQEG-DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDSLQLDIVRQIRE 715 (731)
T ss_pred cCCeeeeeecCC-CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHHHHHHHHHHHHh
Confidence 999999998755 6799999999999999999999999999999999999999999999999987653
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-111 Score=851.99 Aligned_cols=675 Identities=36% Similarity=0.578 Sum_probs=606.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
.+..++|||+|++|+|+||||.+++++|.+|.+...|.+++|.+++|++..|++||||++++.+.+.|+++++|+|||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.||.-++.+.+++.|+++.|+|++.|+++||..+|+++.+.++|...|+||||+..+++...+++++++|+.+++.+++
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l 191 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL 191 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCc-eeeeecccceEEeecC-cCCCceeeeecc----cHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcC-----
Q 005154 179 PVGAEDNF-KGVVDLVKMKAIIWSG-EELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG----- 247 (711)
Q Consensus 179 p~~~~~~~-~g~vd~~~~~~~~~~~-~~~g~~~~~~~~----~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~----- 247 (711)
|+++...| +|++|++..+.+.|.. ++.|..|...+. +.++.+...+.+..+++.+++.|+++.+++++.
T Consensus 192 pi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~ 271 (753)
T KOG0464|consen 192 PIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENF 271 (753)
T ss_pred cccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccc
Confidence 99999999 8999999988888853 457888877653 345666778889999999999999999999975
Q ss_pred CCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 005154 248 NEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 327 (711)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 327 (711)
+.++.++++.++++.+......|++||||+++.||++|+|++.-|+|+|.++...... =.+..+|++
T Consensus 272 d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflq-------------wykddlcal 338 (753)
T KOG0464|consen 272 DKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQ-------------WYKDDLCAL 338 (753)
T ss_pred cccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHh-------------hhhhhHHHH
Confidence 5688999999999999999999999999999999999999999999999886542110 124678999
Q ss_pred EEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCC
Q 005154 328 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA 407 (711)
Q Consensus 328 V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~ 407 (711)
.||+.+|+.+|.++|.|+|||+++.+-.|+|.+...++.+.++|.+.+++..+++++.||+|....|++.+.+|||+..+
T Consensus 339 afkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivas 418 (753)
T KOG0464|consen 339 AFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVAS 418 (753)
T ss_pred hhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEec
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999643
Q ss_pred C------------------------CccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeE
Q 005154 408 D------------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQT 463 (711)
Q Consensus 408 ~------------------------~~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~ 463 (711)
. ....+.++++|.||+++.|||.+....+.+..+|+.|.+||||++++.|+++||+
T Consensus 419 kasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqt 498 (753)
T KOG0464|consen 419 KASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQT 498 (753)
T ss_pred chhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCce
Confidence 2 1234678899999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCC-----cE
Q 005154 464 VIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG-----YE 538 (711)
Q Consensus 464 il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-----~~ 538 (711)
+++||||||+|++.+|++++||+++-+++.+|+|||++.++.....+..+..|...+-.-|.+...|.+..+- +.
T Consensus 499 il~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkie 578 (753)
T KOG0464|consen 499 ILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIE 578 (753)
T ss_pred EEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEE
Confidence 9999999999999999999999999999999999999999876655555544544443444454555444332 23
Q ss_pred EEeccc-CCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeee
Q 005154 539 FKSEIK-GGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLE 617 (711)
Q Consensus 539 ~~~~~~-~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llE 617 (711)
|+-.-. ...+.+--++||++|+..||.+|||+|+|+++|+++|+.+-.|....++.-+..|+++|+.+|+.+|..+++|
T Consensus 579 fe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~e 658 (753)
T KOG0464|consen 579 FELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLE 658 (753)
T ss_pred eeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 332111 1122233389999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ceeEEEEEeCc-cchhHHHHHHhcCCceeeccccCCCCe-EEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 618 PIMKVEVVTPE-EHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 618 Pi~~~eI~~p~-~~~g~v~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
|+|+++|.+.. +++..|+++|.+|||.+.+.+....+. .+|.|.+|++|+.||+..||.+|+|.|.|.++|++|+.|.
T Consensus 659 plm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 659 PLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred hhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcC
Confidence 99999999955 899999999999999999999876444 7899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 005154 696 QHIQNQLAAKE 706 (711)
Q Consensus 696 ~~~~~~~~~~~ 706 (711)
++.+.++++.+
T Consensus 739 ~~dk~~il~kr 749 (753)
T KOG0464|consen 739 EHDKMEILKKR 749 (753)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-106 Score=829.49 Aligned_cols=662 Identities=28% Similarity=0.399 Sum_probs=541.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------- 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~--------------- 86 (711)
.++||+.+++|+|||||||+++|...+|.++.. ...+++++|..+.|++|||||+++.+++.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeec--ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 469999999999999999999999888876532 234579999999999999999999999876
Q ss_pred -cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHH
Q 005154 87 -NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 -~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l 165 (711)
+++.+||||.|||.||++++..++|..|++++|||+.+|++.||+++++++...++..++|+||+||.--+++-..+++
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeL 174 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEEL 174 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999765443333333
Q ss_pred HHHhCCcceEEEeccCCCC-Cceeeeeccc-ceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccC--HHHH
Q 005154 166 VTNLGAKPLVVQLPVGAED-NFKGVVDLVK-MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD--DEAM 241 (711)
Q Consensus 166 ~~~l~~~~~~~~~p~~~~~-~~~g~vd~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~--d~l~ 241 (711)
.+.|......+.+-+..++ .--|.+.+.. ...+.|.++.+||.|+..+|++.|..++.....+++..||... +.-.
T Consensus 175 yqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~kt 254 (842)
T KOG0469|consen 175 YQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKT 254 (842)
T ss_pred HHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccC
Confidence 3333221111222222211 2233444443 3467888999999999999999999999888888888887511 0000
Q ss_pred HHHhc------C----------------------CCCCHHHHHHHHHhhhh------------------cCcceeeeecc
Q 005154 242 ESYLE------G----------------------NEPDEETIKKLIRKGTI------------------AGSFVPVLCGS 275 (711)
Q Consensus 242 e~~l~------~----------------------~~~~~~~~~~~l~~~~~------------------~~~~~Pv~~~S 275 (711)
.+|-. | ....++|+...+.+.-+ ++.|+|.
T Consensus 255 kk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPA---- 330 (842)
T KOG0469|consen 255 KKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPA---- 330 (842)
T ss_pred CcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcch----
Confidence 01100 0 01233444443333211 2234443
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCC-CeEEEEEEEeeE
Q 005154 276 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFV-GSLTFVRVYAGT 349 (711)
Q Consensus 276 a~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~-g~l~~~RV~sG~ 349 (711)
-+.||++|+-|||||..+++++.. +.+++.+..++.||+++|+++||+||...... .+++|||||||+
T Consensus 331 ------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~ 404 (842)
T KOG0469|consen 331 ------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGK 404 (842)
T ss_pred ------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecce
Confidence 267999999999999999988733 44566677889999999999999999764443 679999999999
Q ss_pred eCCCCEEEeCC----CCcee-----ecceeEEeccCceeecCeeecCCEEEEeCCCc-cccCccccCCCCccccccCCCC
Q 005154 350 LSAGSYVLNAN----KGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPILLERMDFP 419 (711)
Q Consensus 350 l~~gd~v~~~~----~~~~~-----~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdtl~~~~~~~~l~~~~~~ 419 (711)
+..|+++++.. +|+++ .|.+...|+|+..++++.++||+|+++.|+++ +.++.||+..+....+.-++|+
T Consensus 405 v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFS 484 (842)
T KOG0469|consen 405 VFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFS 484 (842)
T ss_pred eccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEee
Confidence 99999999544 44442 36777889999999999999999999999998 3555589888888888888887
Q ss_pred -CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CeEEEEeCceeeE
Q 005154 420 -DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVNY 497 (711)
Q Consensus 420 -~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~-~v~~~~~~p~V~y 497 (711)
.||+++++|++++.|++||.++|++|++.||.+.+.++ |+||+++.|.||||||||+++|++.| ++.++.|+|.|+|
T Consensus 485 VSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~-esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsY 563 (842)
T KOG0469|consen 485 VSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSY 563 (842)
T ss_pred ccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEec-cCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeee
Confidence 99999999999999999999999999999999999995 79999999999999999999999999 8999999999999
Q ss_pred EeeecccceeEEEEEeecCCCcceEEEEEEEeeccCC-------------------------------------------
Q 005154 498 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------------------------- 534 (711)
Q Consensus 498 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------------- 534 (711)
|||+.++++..+..+. .+...++.+..+|++.+
T Consensus 564 rEtvs~~ss~~~lsKS----pNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd 639 (842)
T KOG0469|consen 564 RETVSEESSQTCLSKS----PNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPD 639 (842)
T ss_pred ecccccccchhhhccC----CcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCC
Confidence 9999988765443221 12223455555555332
Q ss_pred --CCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHH--HHHHHHHHHHHHHH
Q 005154 535 --SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAF--QLAARGAFREGMRK 610 (711)
Q Consensus 535 --~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~--~~a~~~~~~~a~~~ 610 (711)
..+.+.+.+++-.+.++++++|..||+||.++|||+|+.++|++|.|.|...|....+.+.. .+.+|++|+.+++.
T Consensus 640 ~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~ 719 (842)
T KOG0469|consen 640 GTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLT 719 (842)
T ss_pred CCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHh
Confidence 12567788888888999999999999999999999999999999999999999977776554 47999999999999
Q ss_pred cCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCe-EEEEEEechhHHhhhHHHhhhccCceEEEEEEeC
Q 005154 611 AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLA 689 (711)
Q Consensus 611 a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~ 689 (711)
|+|+|+||+|.+||+||++++|.||+.|+++||++.+++...|+. +.|+|++|+.|+|||..+||+-|.|+|..+|.|+
T Consensus 720 A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFd 799 (842)
T KOG0469|consen 720 AGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFD 799 (842)
T ss_pred cCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeee
Confidence 999999999999999999999999999999999999999988776 9999999999999999999999999999999999
Q ss_pred ccccCCchHHH
Q 005154 690 KFDVVPQHIQN 700 (711)
Q Consensus 690 ~y~~v~~~~~~ 700 (711)
||+++|+++++
T Consensus 800 Hws~lpgdp~d 810 (842)
T KOG0469|consen 800 HWSILPGDPLD 810 (842)
T ss_pred ccccCCCCCCC
Confidence 99999999764
No 14
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-87 Score=710.69 Aligned_cols=659 Identities=24% Similarity=0.343 Sum_probs=507.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-----cCeeEEEE
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINII 94 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-----~~~~i~li 94 (711)
.+.++|||+++||-+||||+|++.|..+++..-. ...+...+++|....|++||++|++...++-. +.+.+|++
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3567999999999999999999999877662211 11222348999999999999999999998866 56889999
Q ss_pred eCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc-----------HHHHHH
Q 005154 95 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTRD 163 (711)
Q Consensus 95 DtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~-----------~~~~~~ 163 (711)
|||||.+|+.++.++++.+|++++|||+.+|+.-+|+.+++++.+.++|+++|+||+||...+ +..+++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987533 223334
Q ss_pred HHHHHhC---CcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHH-----------------
Q 005154 164 MIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ----------------- 223 (711)
Q Consensus 164 ~l~~~l~---~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------- 223 (711)
+++..+. ....++.-|+ ..+++|.++.+||.|+..+|+..|.+...
T Consensus 283 ~iN~~is~~s~~~~~~~sP~--------------~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf 348 (971)
T KOG0468|consen 283 EINNLISTFSKDDNPVVSPI--------------LGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYF 348 (971)
T ss_pred Hhcchhhhcccccccccccc--------------cCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccc
Confidence 4432221 1111111121 34677888888999998887766654321
Q ss_pred ------------------HHHHHHHHHHhc-------cCHHHHHHHhc--CCCCCHHHHHHHHHhhhhcCcceeeeeccc
Q 005154 224 ------------------EYRSQMIETIVE-------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSA 276 (711)
Q Consensus 224 ------------------~~r~~l~e~l~~-------~~d~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa 276 (711)
.+-+.++|.+.. .-++-+...+. |..+++++++-..+-+.. .++..|++..
T Consensus 349 ~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~ 426 (971)
T KOG0468|consen 349 HSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE 426 (971)
T ss_pred cccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch
Confidence 112233443321 01111111111 123444444321111100 0000111211
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEee-cCCCCeEEEEEEEeeEe
Q 005154 277 FKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMS-DPFVGSLTFVRVYAGTL 350 (711)
Q Consensus 277 ~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~-~~~~g~l~~~RV~sG~l 350 (711)
.-+.|++++|+|+|.+....+.. +.+......+..|++.+|++..+.|++. ++...+.+|+||+||++
T Consensus 427 ------sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~ 500 (971)
T KOG0468|consen 427 ------SGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQV 500 (971)
T ss_pred ------hhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecce
Confidence 34789999999999985443321 2223334567889999999999999986 55567899999999999
Q ss_pred CCCCEEEeCCCC---------ceeecceeEEeccCceeecCeeecCCEEEEeCCCc-cccCccccCC---CCccccccCC
Q 005154 351 SAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILLERMD 417 (711)
Q Consensus 351 ~~gd~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdtl~~~---~~~~~l~~~~ 417 (711)
+.|+.|.+...+ ....|++++.+.+++..+|++|+||+++.|.|+++ +.+..|+++. ++...++|++
T Consensus 501 ~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~ 580 (971)
T KOG0468|consen 501 VTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLK 580 (971)
T ss_pred eecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchh
Confidence 999999865433 12468899999999999999999999999999987 5667788765 3456677887
Q ss_pred C-CCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CeEEEEeCcee
Q 005154 418 F-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQV 495 (711)
Q Consensus 418 ~-~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~-~v~~~~~~p~V 495 (711)
+ ..|+++++++|.+|++++||+++|++.++.+|.+..++ +++||++|.|.|||+|++++.+||+-| .+++++++|.|
T Consensus 581 ~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv 659 (971)
T KOG0468|consen 581 FNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVV 659 (971)
T ss_pred cCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCcee
Confidence 5 59999999999999999999999999999999999998 689999999999999999999999999 69999999999
Q ss_pred eEEeeecccceeEEEEEeecCCC------------------------------------cce------EEEEEEEeeccC
Q 005154 496 NYRESISKVSEVKYVHKKQSGGQ------------------------------------GQF------ADITVRFEPMEA 533 (711)
Q Consensus 496 ~yrEti~~~~~~~~~~~~~~~~~------------------------------------~~~------~~~~~~~~P~~~ 533 (711)
.|.||+.++++..+-......++ ..| +.-.|.++|...
T Consensus 660 ~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~ 739 (971)
T KOG0468|consen 660 RFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYT 739 (971)
T ss_pred EEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCC
Confidence 99999998766544221110000 001 123344555433
Q ss_pred CCCcEEEecccCCcCccc----cHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHH--HHHHHHHHHHHH
Q 005154 534 GSGYEFKSEIKGGAVPKE----YIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLA--FQLAARGAFREG 607 (711)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~----~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~--~~~a~~~~~~~a 607 (711)
| .|++.+.+....+.++ ++++|++||+|++++||||++|++||+|+|.|+...+...+.+. +.+++|++++.|
T Consensus 740 G-pNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Ysa 818 (971)
T KOG0468|consen 740 G-PNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSA 818 (971)
T ss_pred C-CceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHH
Confidence 3 2556666666555544 67899999999999999999999999999999988765555443 458999999999
Q ss_pred HHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCe-EEEEEEechhHHhhhHHHhhhccCceEEEEE
Q 005154 608 MRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIM 686 (711)
Q Consensus 608 ~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~ 686 (711)
++.|.|+||||+|.+||++|.+++..|+..|++|||+|....+..|+. +.|+|++|+.++|||.++||-.|+|+|.|++
T Consensus 819 fL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~ 898 (971)
T KOG0468|consen 819 FLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLS 898 (971)
T ss_pred HHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHH
Confidence 999999999999999999999999999999999999999999988876 9999999999999999999999999999999
Q ss_pred EeCccccCCchHHHHHH
Q 005154 687 QLAKFDVVPQHIQNQLA 703 (711)
Q Consensus 687 ~f~~y~~v~~~~~~~~~ 703 (711)
.|+||++||++++++-|
T Consensus 899 vF~HW~~VPGDpLDKsi 915 (971)
T KOG0468|consen 899 VFDHWRIVPGDPLDKSI 915 (971)
T ss_pred hhhhcccCCCCcccccc
Confidence 99999999999998765
No 15
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.8e-83 Score=725.65 Aligned_cols=455 Identities=32% Similarity=0.507 Sum_probs=412.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
+|||+|+||+|||||||+++|++.+|.+...+.+.. +.+|+.+.|++||+|+.+....+.|++++++|||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 699999999999999999999999998877665543 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 183 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~ 183 (711)
.++.++++.+|++++|||+.+|+..||+.+|..+...++|+++|+||+|+..+++.++++++.+.|..-
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----------- 147 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----------- 147 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999999999999999998877777777766544210
Q ss_pred CCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 005154 184 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 263 (711)
Q Consensus 184 ~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~ 263 (711)
|. ++
T Consensus 148 ----------------------g~-----------------------------~~------------------------- 151 (594)
T TIGR01394 148 ----------------------GA-----------------------------DD------------------------- 151 (594)
T ss_pred ----------------------cc-----------------------------cc-------------------------
Confidence 00 00
Q ss_pred hcCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 005154 264 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 333 (711)
Q Consensus 264 ~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 333 (711)
....+|++++||++|. |+.+|++.|.+++|+|.. ++++||+++|+++++
T Consensus 152 -e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 152 -EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDY 210 (594)
T ss_pred -ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEe
Confidence 0012589999999996 799999999999999954 247899999999999
Q ss_pred cCCCCeEEEEEEEeeEeCCCCEEEeCCCCc---eeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCc
Q 005154 334 DPFVGSLTFVRVYAGTLSAGSYVLNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 410 (711)
Q Consensus 334 ~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~---~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~ 410 (711)
+++.|++++|||+||+|++||.|++.+.+. ..+|++|+.+.|.+..++++|.||||+++.|++++.+||||++.+.+
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcc
Confidence 999999999999999999999999887532 47899999999999999999999999999999999999999999988
Q ss_pred cccccCCCCCCeEEEEEEeCCC---cCHH------HHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHH
Q 005154 411 ILLERMDFPDPVIKVAIEPKTK---ADID------KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 481 (711)
Q Consensus 411 ~~l~~~~~~~pv~~~~iep~~~---~d~~------~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~ 481 (711)
..++++++++|+++++++|++. .+.. +|.++|.++.++||+|+++.++++++++|+|+|||||+|++++|+
T Consensus 291 ~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 370 (594)
T TIGR01394 291 EALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMR 370 (594)
T ss_pred ccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHh
Confidence 8899999999999999999865 3322 499999999999999999999999999999999999999999999
Q ss_pred hhcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHH
Q 005154 482 REFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLE 561 (711)
Q Consensus 482 ~~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~ 561 (711)
++ |+++.+++|+|+||| +.
T Consensus 371 re-g~e~~~~~P~V~yre-i~----------------------------------------------------------- 389 (594)
T TIGR01394 371 RE-GFELQVGRPQVIYKE-ID----------------------------------------------------------- 389 (594)
T ss_pred cc-CceEEEeCCEEEEEe-CC-----------------------------------------------------------
Confidence 99 999999999999999 42
Q ss_pred HHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcC
Q 005154 562 ECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSR 641 (711)
Q Consensus 562 ~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~r 641 (711)
| .+||||++++|.||++|+|+||++|++|
T Consensus 390 -----g----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~R 418 (594)
T TIGR01394 390 -----G----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKR 418 (594)
T ss_pred -----C----------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHh
Confidence 0 4899999999999999999999999999
Q ss_pred CceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHH
Q 005154 642 RGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQN 700 (711)
Q Consensus 642 rg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~ 700 (711)
||+++++++.++++..|+|.+|+++++||.++||++|+|+|+|+++|+||+++|++++.
T Consensus 419 rG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 419 KGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred CCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 99999999876578999999999999999999999999999999999999999987654
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=2.4e-81 Score=706.61 Aligned_cols=455 Identities=29% Similarity=0.468 Sum_probs=409.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+++|||+|+||+|||||||+++|++.+|.+...... ..+.+|+.+.|+++|+|+.+....+.|+++.+++||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~--~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET--QERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCccccccc--ceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 469999999999999999999999888877654433 238999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 181 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~ 181 (711)
|..++.++++.+|++|+|+|+.+|+..|++.+|..+...++|.++|+||+|+..+++.++++++.+.|..-
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------- 151 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL--------- 151 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999888888888877654210
Q ss_pred CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 005154 182 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 261 (711)
Q Consensus 182 ~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~ 261 (711)
+. .
T Consensus 152 ------------------------~~-----------------------------~------------------------ 154 (607)
T PRK10218 152 ------------------------DA-----------------------------T------------------------ 154 (607)
T ss_pred ------------------------Cc-----------------------------c------------------------
Confidence 00 0
Q ss_pred hhhcCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 005154 262 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 331 (711)
Q Consensus 262 ~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 331 (711)
....-+|++++||++|. |+.+|+++|.+++|+|.. ++++||.++|||+
T Consensus 155 --~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~ 212 (607)
T PRK10218 155 --DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQL 212 (607)
T ss_pred --ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 00112689999999998 689999999999999953 2478999999999
Q ss_pred eecCCCCeEEEEEEEeeEeCCCCEEEeCCC-Cc--eeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCC
Q 005154 332 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 408 (711)
Q Consensus 332 ~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~-~~--~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~ 408 (711)
+++++.|++++|||++|+|++||.|++.+. ++ .++|++|+.+.|.+..++++|.||||+++.|++++.+||||++.+
T Consensus 213 ~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 213 DYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCC
Confidence 999999999999999999999999998765 43 588999999999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCeEEEEEEeCC---CcCHHHHHH---HHHHHH---hcCCceEEEEcCCCCeEEEEecChhhHHHHHHH
Q 005154 409 HPILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLA---QEDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 479 (711)
Q Consensus 409 ~~~~l~~~~~~~pv~~~~iep~~---~~d~~~L~~---~L~~l~---~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~ 479 (711)
.+..++++++++|++++++.|++ ..+..|+.. +|.+|. ++||+|+++.++++++++|+|+|||||+|++++
T Consensus 293 ~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~ 372 (607)
T PRK10218 293 NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 372 (607)
T ss_pred CcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHH
Confidence 88889999999999999999999 668888744 445554 499999999999999999999999999999999
Q ss_pred HHhhcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHH
Q 005154 480 LKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 559 (711)
Q Consensus 480 L~~~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g 559 (711)
|+++ |+++.+++|+|+|||| + +
T Consensus 373 lrre-g~e~~~~~P~V~yret--~---------------g---------------------------------------- 394 (607)
T PRK10218 373 MRRE-GFELAVSRPKVIFREI--D---------------G---------------------------------------- 394 (607)
T ss_pred HHhC-CceEEEeCCEEEEEEE--C---------------C----------------------------------------
Confidence 9999 9999999999999998 0 0
Q ss_pred HHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHh
Q 005154 560 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLN 639 (711)
Q Consensus 560 ~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~ 639 (711)
+.+|||++++|.||++|+|+||++|+
T Consensus 395 ------------------------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~ 420 (607)
T PRK10218 395 ------------------------------------------------------RKQEPYENVTLDVEEQHQGSVMQALG 420 (607)
T ss_pred ------------------------------------------------------EEeCCeEEEEEEechhhHHHHHHHHH
Confidence 11599999999999999999999999
Q ss_pred cCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC-chH
Q 005154 640 SRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP-QHI 698 (711)
Q Consensus 640 ~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~-~~~ 698 (711)
+|||+++++++.++++..|+|.+|+++++||.++|+++|+|+|.|+++|+||+++| +++
T Consensus 421 ~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 421 ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred hcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 99999999998655789999999999999999999999999999999999999999 654
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=5.6e-81 Score=708.28 Aligned_cols=462 Identities=29% Similarity=0.449 Sum_probs=407.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----CeeEEEEe
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 95 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-----~~~i~liD 95 (711)
.+++|||+|+||+|||||||+++|++.+|.+.... .+++++|+++.|++||+|+++....+.|+ ++.++|||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 46799999999999999999999999998876532 35789999999999999999999999885 68999999
Q ss_pred CCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceE
Q 005154 96 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 175 (711)
Q Consensus 96 tPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~ 175 (711)
||||.+|..++.++++.+|++|+|||+++|++.++...|..+...++|+++|+||+|+..++..+..+++.+.++..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999998888999999999999997665544444444333210
Q ss_pred EEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHH
Q 005154 176 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 255 (711)
Q Consensus 176 ~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~ 255 (711)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 005154 256 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 335 (711)
Q Consensus 256 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 335 (711)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|+.++||++++++
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~ 205 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDN 205 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecC
Confidence 0137889999999999999999999999964 24789999999999999
Q ss_pred CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe-C---CCccccCccccCCCCc-
Q 005154 336 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 410 (711)
Q Consensus 336 ~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~- 410 (711)
++|.++++||++|+|++||+|++.+.++..+|++|+.+.+ +..+++++.||||+.+. | ++++++||||++.+.+
T Consensus 206 ~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~ 284 (600)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (600)
T ss_pred CCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc
Confidence 9999999999999999999999999888999999996665 78999999999998884 4 4568999999988766
Q ss_pred -cccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhc
Q 005154 411 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 484 (711)
Q Consensus 411 -~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g-----~Gelhlei~~~~L~~~~ 484 (711)
..+++++.++|+++++++|.+..|.++|.++|++|+++||||.++ ++|++.++.| ||+|||||+.+||+++|
T Consensus 285 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred ccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999997 6799999888 99999999999999999
Q ss_pred CeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 005154 485 KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 564 (711)
Q Consensus 485 ~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~ 564 (711)
|+++.+++|.|+||||+++. . ++.|.+
T Consensus 363 ~~~v~~~~P~V~Yreti~~g-------------~-----------------~~~~~~----------------------- 389 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTDG-------------E-----------------VIEVDN----------------------- 389 (600)
T ss_pred CceEEEecCEEEEEEEEeCC-------------c-----------------EEEEEC-----------------------
Confidence 99999999999999998751 0 111111
Q ss_pred HcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCce
Q 005154 565 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 644 (711)
Q Consensus 565 ~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~ 644 (711)
| .|+| |+++++ .|+||||+++|.||++|+|+||++|++|||+
T Consensus 390 ---p-~~~p----------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~ 431 (600)
T PRK05433 390 ---P-SKLP----------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGV 431 (600)
T ss_pred ---c-ccCC----------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCE
Confidence 2 2343 444331 8999999999999999999999999999999
Q ss_pred eeccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 645 INSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 645 i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
++++++.+ ++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++..
T Consensus 432 ~~~~~~~~-~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 482 (600)
T PRK05433 432 QKDMEYLG-NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESD 482 (600)
T ss_pred EeCcEecC-CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCccccc
Confidence 99999876 67999999999999 9999999999999999999999999874
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6.3e-80 Score=699.06 Aligned_cols=460 Identities=29% Similarity=0.455 Sum_probs=404.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--C---eeEEEEeCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDTP 97 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~---~~i~liDtP 97 (711)
++|||+|+||+|||||||+++|++.+|.+... ..+++++|+.+.|++||+|+.+..+.+.|. + +.++|||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999999988877643 235689999999999999999999998884 3 789999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+...+..+..+++.+.++..
T Consensus 79 G~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 79 GHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999999999999999999888888899999999999987655444444444332210
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 005154 258 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 337 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~ 337 (711)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|+.++||+++++++.
T Consensus 154 ----------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~~ 203 (595)
T TIGR01393 154 ----------ASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNYR 203 (595)
T ss_pred ----------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCCC
Confidence 0137889999999999999999999999964 2478999999999999999
Q ss_pred CeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe-C---CCccccCccccCCCCc--c
Q 005154 338 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP--I 411 (711)
Q Consensus 338 g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~--~ 411 (711)
|.++++||++|+|++||+|++.+.++..+|.+|+.+.+.. .+++++.||||+.+. | ++++++||||++.+++ .
T Consensus 204 G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~ 282 (595)
T TIGR01393 204 GVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKE 282 (595)
T ss_pred cEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcccc
Confidence 9999999999999999999999888889999999777665 899999999998884 4 4568999999988766 3
Q ss_pred ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhcCe
Q 005154 412 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKV 486 (711)
Q Consensus 412 ~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g-----~Gelhlei~~~~L~~~~~v 486 (711)
.+++++.++|+++++++|.+..|.++|.++|++|+++||||.++. +|++.++.| +|+|||||+.+||+++||+
T Consensus 283 ~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 283 PLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999999999999999999984 789877774 9999999999999999999
Q ss_pred EEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHc
Q 005154 487 EANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSN 566 (711)
Q Consensus 487 ~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~ 566 (711)
++.+++|.|+||||+.+ | + .+. |.|
T Consensus 361 ~v~~~~P~V~Yreti~~-------------g--~----~~~-----------~~~------------------------- 385 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTN-------------G--E----VIE-----------VDN------------------------- 385 (595)
T ss_pred eeEEecCEEEEEEEecC-------------C--c----EEE-----------EEC-------------------------
Confidence 99999999999999863 1 1 111 111
Q ss_pred CcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceee
Q 005154 567 GVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQIN 646 (711)
Q Consensus 567 Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~ 646 (711)
| .|||+.|. -|.|+||||+++|.+|++|+|+||++|++|||+++
T Consensus 386 -p-~~~p~~~~----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~ 429 (595)
T TIGR01393 386 -P-SDLPDPGK----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQT 429 (595)
T ss_pred -c-ccCCCccc----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEe
Confidence 2 47887652 17899999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccC
Q 005154 647 SFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 647 ~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
+++..++++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++-
T Consensus 430 ~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 430 NMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred CcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 999865457999999999997 999999999999999999999999984
No 19
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-81 Score=674.75 Aligned_cols=658 Identities=27% Similarity=0.410 Sum_probs=494.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
.+.+.+||||+++|+|||||||+++|+..+|.+++ .|.+ +++|+.++|+.||||++++.+++..+++.+||||+
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagki----rfld~redeq~rgitmkss~is~~~~~~~~nlids 79 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI----RFLDTREDEQTRGITMKSSAISLLHKDYLINLIDS 79 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccce----eeccccchhhhhceeeeccccccccCceEEEEecC
Confidence 35577999999999999999999999999997665 3443 89999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccH-----------HHHHHHH
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTRDMI 165 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~-----------~~~~~~l 165 (711)
|||.||.+++..+.+.+|+++++||+.+|++.||..+++++...++.+++|+|||||...++ -++++++
T Consensus 80 pghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~v 159 (887)
T KOG0467|consen 80 PGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQV 159 (887)
T ss_pred CCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999765432 2344444
Q ss_pred HHHhCCcceEEEeccCCCCCceeeee----cc-cceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc-----
Q 005154 166 VTNLGAKPLVVQLPVGAEDNFKGVVD----LV-KMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE----- 235 (711)
Q Consensus 166 ~~~l~~~~~~~~~p~~~~~~~~g~vd----~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~----- 235 (711)
+...|.....+ +-. .+....+-| +- ...++.|.....||.|....+...|..+....+..+...+|.
T Consensus 160 n~~i~~~~~~~-v~l--~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~ 236 (887)
T KOG0467|consen 160 NGVIGQFLGGI-VEL--DDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYID 236 (887)
T ss_pred hhHHHHhhcch-hhc--cchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeec
Confidence 43333110000 000 000000000 00 112344444447888888887776655544333344333332
Q ss_pred -----------------------------c--------CHHHHHHHhc--CCCCCHHHHHHHHHhhhhcCcceeeeeccc
Q 005154 236 -----------------------------L--------DDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSA 276 (711)
Q Consensus 236 -----------------------------~--------~d~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa 276 (711)
. |.+-+++... +..+.+.+++..+.. +..+|+|+-
T Consensus 237 ~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~--im~~wLPls---- 310 (887)
T KOG0467|consen 237 PKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDA--IMSTWLPLS---- 310 (887)
T ss_pred chhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHH--HHHhhcccc----
Confidence 1 1122222211 122333333322221 246778864
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCCC--------CCCcccccccccCCCCCeEEEEEEEeecC-----CCCeEEEE
Q 005154 277 FKNKGVQPLLDAVVDYLPSPLDLPAMKGTD--------PENPEATLERAASDDEPFAGLAFKIMSDP-----FVGSLTFV 343 (711)
Q Consensus 277 ~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~V~k~~~~~-----~~g~l~~~ 343 (711)
+..+-+.+.++|+|.+.+..++.. .+.+.......|++++|..+||+|+...+ ....++++
T Consensus 311 ------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~a 384 (887)
T KOG0467|consen 311 ------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFA 384 (887)
T ss_pred ------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeee
Confidence 456677788999998776544221 01123344567999999999999997643 32368999
Q ss_pred EEEeeEeCCCCEEEeCCC-------CceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccC
Q 005154 344 RVYAGTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM 416 (711)
Q Consensus 344 RV~sG~l~~gd~v~~~~~-------~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~ 416 (711)
||||||++.||.++..+. -...+|.++|.++|++..+.+++++|++++|.|-+.+....|+|+.....++...
T Consensus 385 ri~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~ 464 (887)
T KOG0467|consen 385 RIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVV 464 (887)
T ss_pred eeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeee
Confidence 999999999999997654 1235799999999999999999999999999983345667799887443333334
Q ss_pred CCC-CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CeEEEEeCce
Q 005154 417 DFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQ 494 (711)
Q Consensus 417 ~~~-~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~-~v~~~~~~p~ 494 (711)
.+. +|.++++|+|.+|.++++|.++|+.|+..||++++..+ ++||+++...||+|||-|+.+|++ | ++++.+++|.
T Consensus 465 ~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~ 542 (887)
T KOG0467|consen 465 NFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPL 542 (887)
T ss_pred eeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCc
Confidence 443 99999999999999999999999999999999999985 699999999999999999999999 7 8999999999
Q ss_pred eeEEeeecccceeE----------------E------------------EEEe------------------ecC--CC--
Q 005154 495 VNYRESISKVSEVK----------------Y------------------VHKK------------------QSG--GQ-- 518 (711)
Q Consensus 495 V~yrEti~~~~~~~----------------~------------------~~~~------------------~~~--~~-- 518 (711)
|+||||+.+.+... . .|.. +.+ ..
T Consensus 543 vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~l 622 (887)
T KOG0467|consen 543 VPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENL 622 (887)
T ss_pred cchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccc
Confidence 99999994432110 0 0000 000 00
Q ss_pred -------cceE------------EEEEEEeeccCCCCcEEEecccCC-------c-CccccHHHHHHHHHHHHHcCcccC
Q 005154 519 -------GQFA------------DITVRFEPMEAGSGYEFKSEIKGG-------A-VPKEYIPGVMKGLEECMSNGVLAG 571 (711)
Q Consensus 519 -------~~~~------------~~~~~~~P~~~~~~~~~~~~~~~~-------~-~~~~~~~~i~~g~~~a~~~Gpl~g 571 (711)
+.|- .-.|.|+|...|.++.|+..-.-. . +.+ +-+++..||+.++..||||.
T Consensus 623 s~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~ 701 (887)
T KOG0467|consen 623 SLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCN 701 (887)
T ss_pred cHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccc
Confidence 0000 012347777777666665322111 1 223 67999999999999999999
Q ss_pred CCeeEEEEEEEeccccCCCC--C-HHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeecc
Q 005154 572 FPVVDVRAALVDGSYHDVDS--S-VLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 648 (711)
Q Consensus 572 ~pv~~v~~~l~~~~~~~~~s--~-~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~ 648 (711)
||++|++|.+..+...+..+ + .+...+|++.+|++|++...|+||.|||.|+|++..+++|+||.+|++|+|+|+++
T Consensus 702 Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsE 781 (887)
T KOG0467|consen 702 EPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSE 781 (887)
T ss_pred cCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhh
Confidence 99999999999855544333 1 13456899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-eEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchH
Q 005154 649 GDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 698 (711)
Q Consensus 649 ~~~~g~-~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~ 698 (711)
++.+|+ .+.|+|.+|+.|+|||+.+||..|+|.|+.++.|+||+.++.|+
T Consensus 782 em~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 782 EMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred hhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 998875 49999999999999999999999999999999999999999865
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=5.4e-78 Score=673.03 Aligned_cols=447 Identities=32% Similarity=0.509 Sum_probs=406.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecC---C-CccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE---G-TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~---g-~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
+++|||+|+||+|+|||||+++|++.+|.+...|.++. + ...+|+++.|++||+|+.++...+.|+++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 56999999999999999999999999999998888763 2 2568999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.||..++.++++.+|++|+|+|+++|+..+++.+|+.+...++|+++|+||+|+.+++..++++++++.|+..++|++
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
+|++.+..|+|++|++.++++.|.... |.. ..+.|.+++.||++||+|++++.+ +++.+
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~-~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGE-GHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCC-CCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 999999999999999999999996421 211 124567889999999999998744 55555
Q ss_pred HH-----------HhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEE
Q 005154 258 LI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 326 (711)
Q Consensus 258 ~l-----------~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 326 (711)
.+ ++.+..+.++|||||||++|.|+++|||+|++++|+|..+... .....+ .+.++++
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~-~~~~~~~ 295 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD----------EREVEP-TEEKFSG 295 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc----------ceeecC-CCCceEE
Confidence 55 8888999999999999999999999999999999999764321 011122 2467999
Q ss_pred EEEEEe---ecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCcc
Q 005154 327 LAFKIM---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 403 (711)
Q Consensus 327 ~V~k~~---~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 403 (711)
+|||+. .++++|+++|+|||||+|++|++|++.++++++++++++.++|.++.++++|.||||+++.|++++++|||
T Consensus 296 ~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDT 375 (526)
T PRK00741 296 FVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDT 375 (526)
T ss_pred EEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCC
Confidence 999998 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhh
Q 005154 404 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 483 (711)
Q Consensus 404 l~~~~~~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~ 483 (711)
|++.+ +..+++++++.|+++++|+|.++.|.+||.+||++|++||| +++..|++|||++|+|||+|||||+++||+++
T Consensus 376 L~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~e 453 (526)
T PRK00741 376 FTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNE 453 (526)
T ss_pred ccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHH
Confidence 99865 67788999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred cCeEEEEeCceeeEEeeec
Q 005154 484 FKVEANVGAPQVNYRESIS 502 (711)
Q Consensus 484 ~~v~~~~~~p~V~yrEti~ 502 (711)
||+++.+++|.|++---+.
T Consensus 454 y~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 454 YNVEAIYEPVGVATARWVE 472 (526)
T ss_pred hCCEEEEecCCccEEEEEe
Confidence 9999999999999887664
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.2e-74 Score=641.89 Aligned_cols=446 Identities=30% Similarity=0.465 Sum_probs=393.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CC---CccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
..++|||+|+||+|+|||||+++|++.+|.+...|.++ .| .+++|+++.|++||+|+.++...+.|+++.++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35699999999999999999999999999999888886 33 378999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEE
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 176 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~ 176 (711)
|||.+|..++.++++.+|++|+|+|++.|+..+++.+|+.+...++|+++|+||+|+..++..++++++++.++..+.+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EeccCCCCCceeeeecccceEEeecCcCCCceeeee-----cccHh----HHHHHHHHHHHHHHHHhccCHHHHHHHhcC
Q 005154 177 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-----DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYLEG 247 (711)
Q Consensus 177 ~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~ 247 (711)
++|++.+..|+|++|++.++.+.|.....|+..... +.|.. ..+.++++|+.+ |.+++.++++
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~------- 239 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEF------- 239 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcccc-------
Confidence 999999999999999999999999654333322210 11111 122344556665 6666655422
Q ss_pred CCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 005154 248 NEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 327 (711)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 327 (711)
+ ++++..+.++|||||||++|.|+++|||++++++|+|..+... .....+ .+.|++++
T Consensus 240 ---~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~----------~~~~~~-~~~~~~~~ 297 (527)
T TIGR00503 240 ---D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD----------TRTVEP-TEEKFSGF 297 (527)
T ss_pred ---C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC----------ceecCC-CCCCeeEE
Confidence 2 2456678999999999999999999999999999999764321 011222 36779999
Q ss_pred EEEEee--c-CCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccc
Q 005154 328 AFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETL 404 (711)
Q Consensus 328 V~k~~~--~-~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl 404 (711)
|||+.. | +++|+++|+|||||+|++|++|++.++++++++++++.++|.+++++++|.||||+++.|++++++||||
T Consensus 298 VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl 377 (527)
T TIGR00503 298 VFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTF 377 (527)
T ss_pred EEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEe
Confidence 999998 7 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc
Q 005154 405 CDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 484 (711)
Q Consensus 405 ~~~~~~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~ 484 (711)
++. .+..+++++++.|+++++|+|.++.|.+||.++|++|++||| +++..|++|+|++|+|||+|||||+++||+++|
T Consensus 378 ~~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey 455 (527)
T TIGR00503 378 TQG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY 455 (527)
T ss_pred cCC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 984 467788899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CeEEEEeCceeeEE
Q 005154 485 KVEANVGAPQVNYR 498 (711)
Q Consensus 485 ~v~~~~~~p~V~yr 498 (711)
|+++.+++|.|+.-
T Consensus 456 ~v~v~~~~~~v~~~ 469 (527)
T TIGR00503 456 NVEARYEPVNVATA 469 (527)
T ss_pred CCeEEEeCCCceEE
Confidence 99999999999853
No 22
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2e-73 Score=587.72 Aligned_cols=453 Identities=31% Similarity=0.505 Sum_probs=411.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
..+|||||++|+|||||||++.|+.++|..+....+. .+.||+...|++|||||-+....+.|++++||++|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchh--hhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 3589999999999999999999999999887765553 38999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHh---CCcceEEEe
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL---GAKPLVVQL 178 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l---~~~~~~~~~ 178 (711)
|-+++++.+...|+++++|||.+|..+||+.++..+.+.+++.|+|+||+|++.+++..+++++...| +..
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~------ 154 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT------ 154 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC------
Confidence 99999999999999999999999999999999999999999999999999999999988888776543 221
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|+-+
T Consensus 155 -----------------------------------------------------------deQL----------------- 158 (603)
T COG1217 155 -----------------------------------------------------------DEQL----------------- 158 (603)
T ss_pred -----------------------------------------------------------hhhC-----------------
Confidence 1111
Q ss_pred HHhhhhcCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 328 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 328 (711)
-+|++..||+.|. .+.+|++.|.+|+|.|.. ++++||.++|
T Consensus 159 ---------dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qv 209 (603)
T COG1217 159 ---------DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQV 209 (603)
T ss_pred ---------CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEE
Confidence 1567667776543 367999999999999974 3589999999
Q ss_pred EEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC---ceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCcccc
Q 005154 329 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLC 405 (711)
Q Consensus 329 ~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~ 405 (711)
+-..+++++|++..|||++|++|+||.|.....+ +..||++++-+.|-++.++++|.||||++|.|++++..|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 9999999999999999999999999999865443 3468999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCeEEEEEEeCCCc---------CHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHH
Q 005154 406 DADHPILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 476 (711)
Q Consensus 406 ~~~~~~~l~~~~~~~pv~~~~iep~~~~---------d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~ 476 (711)
+++.+..|+.+.+.+|.+++.+..+++. ...++.+.|.+-.+.+.+|+|+..++-..+.++|.|||||-|+
T Consensus 290 d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsIL 369 (603)
T COG1217 290 DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSIL 369 (603)
T ss_pred CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHH
Confidence 9999999999999999999999888765 3689999999999999999999766668899999999999999
Q ss_pred HHHHHhhcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHH
Q 005154 477 VDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 556 (711)
Q Consensus 477 ~~~L~~~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i 556 (711)
++.+||+ |.|+.+|.|+|.|||- .
T Consensus 370 iE~MRRE-GfEl~VsrP~Vi~kei-d------------------------------------------------------ 393 (603)
T COG1217 370 IENMRRE-GFELQVSRPEVIIKEI-D------------------------------------------------------ 393 (603)
T ss_pred HHHhhhc-ceEEEecCceEEEEec-C------------------------------------------------------
Confidence 9999999 9999999999999983 1
Q ss_pred HHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHH
Q 005154 557 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIG 636 (711)
Q Consensus 557 ~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~ 636 (711)
-..+|||-.+.|.||++|.|.|+.
T Consensus 394 --------------------------------------------------------G~~~EP~E~v~iDv~ee~~G~Vie 417 (603)
T COG1217 394 --------------------------------------------------------GVKCEPFEEVTIDVPEEHQGAVIE 417 (603)
T ss_pred --------------------------------------------------------CcCcCcceeEEecCchhhhhHHHH
Confidence 046799999999999999999999
Q ss_pred HHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHH
Q 005154 637 DLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQ 699 (711)
Q Consensus 637 ~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~ 699 (711)
.|..|+|...+|.+.++++.++.+.+|.+.++||.+++.++|+|.|.+...|+||+|+.+++-
T Consensus 418 ~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 418 KLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred HHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccccc
Confidence 999999999999999878999999999999999999999999999999999999999988653
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-71 Score=585.21 Aligned_cols=467 Identities=29% Similarity=0.440 Sum_probs=401.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC---eeEEEE
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINII 94 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~---~~i~li 94 (711)
..|.+++||++|++|+|||||||.++|+..+|.++... ....++|....|++||||+++...++.|++ +.+|||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~---~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLI 130 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI---GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLI 130 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC---chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEee
Confidence 34668999999999999999999999999999665421 235899999999999999999999999988 999999
Q ss_pred eCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcce
Q 005154 95 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPL 174 (711)
Q Consensus 95 DtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~ 174 (711)
|||||.||..|+.+.+..|||+||||||++|++.||...+..+.+.++.+|.|+||+|++.++.+++..++.+.|+..+
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~- 209 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP- 209 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776521
Q ss_pred EEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHH
Q 005154 175 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEET 254 (711)
Q Consensus 175 ~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~ 254 (711)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeec
Q 005154 255 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 334 (711)
Q Consensus 255 ~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 334 (711)
-+++.+||++|.|+.++|++|++.+|+|... .++||.+++|.+++|
T Consensus 210 --------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~--------------------~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 210 --------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI--------------------RDAPLRMLIFDSEYD 255 (650)
T ss_pred --------------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--------------------CCcchHHHhhhhhhh
Confidence 1378899999999999999999999999762 489999999999999
Q ss_pred CCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCee---ecCCEEEEeC-CCccccCccccCCC--
Q 005154 335 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA---LAGDIIALAG-LKDTITGETLCDAD-- 408 (711)
Q Consensus 335 ~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a---~aGdIv~i~g-l~~~~~Gdtl~~~~-- 408 (711)
+++|.++++||..|.+++||+|....+++...++.+-.|.-. ..++.++ .+|+|++-.+ +++++.|||+++..
T Consensus 256 ~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~-~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462|consen 256 EYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE-MTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred hhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC-ceeeeeecccccceeEecccccccccccceeeecccC
Confidence 999999999999999999999998888877666666555533 3445554 4555655555 77889999998865
Q ss_pred C-ccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCC----eEEEEecChhhHHHHHHHHHhh
Q 005154 409 H-PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN----QTVIEGMGELHLEIIVDRLKRE 483 (711)
Q Consensus 409 ~-~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tg----e~il~g~Gelhlei~~~~L~~~ 483 (711)
. ...++.++...|++++...|.+..|...|.+++.+|+.+|+++.+..+. ++ .|.++++|.|||||+.+||++|
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~-s~aLg~gwr~gflG~LHm~Vf~erle~E 413 (650)
T KOG0462|consen 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKES-SGALGQGWRLGFLGLLHMEVFIERLERE 413 (650)
T ss_pred cccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeecC-CcccccceEeeccceeeHHHHHHHHHHh
Confidence 2 3456677778999999999999999999999999999999999998753 33 3789999999999999999999
Q ss_pred cCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHH
Q 005154 484 FKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEEC 563 (711)
Q Consensus 484 ~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a 563 (711)
||.++.+++|.|+||--..+..+ ....+|.
T Consensus 414 yg~elivt~PtV~Yr~~~~~~~~------------------~~i~np~-------------------------------- 443 (650)
T KOG0462|consen 414 YGAELIVTPPTVPYRVVYSNGDE------------------ILISNPA-------------------------------- 443 (650)
T ss_pred cCceeeecCCcceEEEEecCCce------------------eeecChh--------------------------------
Confidence 99999999999999965333211 1112231
Q ss_pred HHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCc
Q 005154 564 MSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRG 643 (711)
Q Consensus 564 ~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg 643 (711)
-+| |-+. -..++||+...+|.+|++|+|.|+..++.|||
T Consensus 444 -------~fp----------------~~~~------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRg 482 (650)
T KOG0462|consen 444 -------LFP----------------DPSD------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRG 482 (650)
T ss_pred -------hCC----------------Cccc------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhh
Confidence 011 0000 02579999999999999999999999999999
Q ss_pred eeeccccCCCCeEEEEEEechhHHhh-hHHHhhhccCceEEEEEEeCccccCC
Q 005154 644 QINSFGDKPGGLKVVDALVPLAEMFQ-YVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 644 ~i~~~~~~~g~~~~i~a~~P~~e~~g-~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
...++....++.+.++..+|++++.+ |...|.+.|+|+|+|.++|++|++-+
T Consensus 483 eq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~sd 535 (650)
T KOG0462|consen 483 EQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQASD 535 (650)
T ss_pred heecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeeccccccccc
Confidence 99999999778999999999999998 99999999999999999999999543
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-70 Score=565.89 Aligned_cols=465 Identities=30% Similarity=0.459 Sum_probs=405.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----CeeEEE
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINI 93 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-----~~~i~l 93 (711)
.+.+++||++|++|.|||||||.++|+..+|.++.. .-...++|.++.|++|||||+...+.+.|+ .|.+||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 456789999999999999999999999999876543 122478999999999999999999999884 389999
Q ss_pred EeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcc
Q 005154 94 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 173 (711)
Q Consensus 94 iDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~ 173 (711)
||||||.||..++.+++..|.++++||||+.|++.||..-.-++...++-++-|+||+|++.++.+++.+++.+.+|+..
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred eEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHH
Q 005154 174 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 253 (711)
Q Consensus 174 ~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~ 253 (711)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (603)
T COG0481 161 S------------------------------------------------------------------------------- 161 (603)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 005154 254 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 333 (711)
Q Consensus 254 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 333 (711)
-...+||++|.|++++|++|++.+|+|.. ++++|+.+++|+.++
T Consensus 162 ----------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~y 205 (603)
T COG0481 162 ----------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWY 205 (603)
T ss_pred ----------------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccc
Confidence 14568999999999999999999999964 368999999999999
Q ss_pred cCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE-eCCC---ccccCccccCCCC
Q 005154 334 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLK---DTITGETLCDADH 409 (711)
Q Consensus 334 ~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~---~~~~Gdtl~~~~~ 409 (711)
|+++|.++++||+.|++++||+|...++|+...|.++..+.. ...+.+++.||+++-+ .|++ +++.|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 999999999999999999999999999999999999888875 6788999999999887 5555 5789999996544
Q ss_pred c--cccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeE-----EEEecChhhHHHHHHHHHh
Q 005154 410 P--ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQT-----VIEGMGELHLEIIVDRLKR 482 (711)
Q Consensus 410 ~--~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~-----il~g~Gelhlei~~~~L~~ 482 (711)
| .++++++-..|++++.+.|.+..|.+.|.+||.+|..+|.||.++. ||.+- ..+.+|-|||||+.+||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~--EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP--ETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeecc--ccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 3 5678888889999999999999999999999999999999999985 45443 3334799999999999999
Q ss_pred hcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHH
Q 005154 483 EFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEE 562 (711)
Q Consensus 483 ~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~ 562 (711)
||++++....|.|.|+-..++.... ..-+|.
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~~~------------------~i~NPs------------------------------- 393 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGEEI------------------EVDNPS------------------------------- 393 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCcEE------------------EecChH-------------------------------
Confidence 9999999999999999765432111 111221
Q ss_pred HHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCC
Q 005154 563 CMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRR 642 (711)
Q Consensus 563 a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rr 642 (711)
.+| +-+. =-.+.||+.++.|.+|++|+|.||..+.++|
T Consensus 394 --------~~P----------------~~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kR 431 (603)
T COG0481 394 --------DLP----------------DPNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQEKR 431 (603)
T ss_pred --------hCC----------------Chhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHHHhc
Confidence 111 0000 0268899999999999999999999999999
Q ss_pred ceeeccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 643 GQINSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 643 g~i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
|...+++..+.+.+.+...+|++|+ ++|.+.|+|.|+|+|+|.++|.+|++-+
T Consensus 432 G~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 432 GIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred CceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 9999999988678999999999998 7999999999999999999999999754
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-63 Score=512.30 Aligned_cols=447 Identities=30% Similarity=0.489 Sum_probs=376.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCC----CccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g----~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
.++|+.|||.|||+|||||++.|+...|++...|.+... .+..||++.|++|||++.++...|+|+++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 468999999999999999999999999999998887542 3688999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.||+..+.+.|..+|.||.|+|+..|+++||+.+++.|+..++|++-|+||+||..-++-++++++.+.|++.+.|+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeee---ecccH-hHHHHH-HHHHHHHHHHHhccCHHHHHHHhcCCCCCH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY---EDIPA-NLQKMA-QEYRSQMIETIVELDDEAMESYLEGNEPDE 252 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~---~~~~~-~~~~~~-~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~ 252 (711)
+||+.++.|+|++|+.+.....|.+...+..... ..+.. +..... ...++++.|.+. |+.. .+.+++
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E-----L~~~--a~~~Fd- 241 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE-----LVQG--AGNEFD- 241 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH-----HHHh--hccccC-
Confidence 9999999999999999998888877533222221 11111 010000 111122221110 0000 001111
Q ss_pred HHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCC-CCCeEEEEEEE
Q 005154 253 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD-DEPFAGLAFKI 331 (711)
Q Consensus 253 ~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~V~k~ 331 (711)
..++..+...|||+|||++|.|++.+|+.++++.|+|..+....+. ..| +..+.+||||+
T Consensus 242 -------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~------------v~p~e~kfsGFVFKI 302 (528)
T COG4108 242 -------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTRE------------VEPTEDKFSGFVFKI 302 (528)
T ss_pred -------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCc------------ccCCCCccceEEEEE
Confidence 2234457779999999999999999999999999999876542221 112 34599999999
Q ss_pred ee---cCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCC
Q 005154 332 MS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 408 (711)
Q Consensus 332 ~~---~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~ 408 (711)
.. .+++.++||.||.||.+.+|+++...++|+..+++.-..+++++++.+++|.||||++|.+-..++.|||++..
T Consensus 303 QANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G- 381 (528)
T COG4108 303 QANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG- 381 (528)
T ss_pred EcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-
Confidence 75 46789999999999999999999999999999999999999999999999999999999877678999999986
Q ss_pred CccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEE
Q 005154 409 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEA 488 (711)
Q Consensus 409 ~~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~ 488 (711)
....+.+++...|-++..|..+++....+|.++|++|++|- .+++..+..++..++...|.||+||+.+||+.|||+++
T Consensus 382 e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~ 460 (528)
T COG4108 382 EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEA 460 (528)
T ss_pred ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeE
Confidence 67778888888999999999999999999999999999998 67777777789999999999999999999999999999
Q ss_pred EEeCceeeE
Q 005154 489 NVGAPQVNY 497 (711)
Q Consensus 489 ~~~~p~V~y 497 (711)
.+.+..++.
T Consensus 461 ~~e~~~~~~ 469 (528)
T COG4108 461 VFEPVNFST 469 (528)
T ss_pred EEeeccceE
Confidence 997665544
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.4e-50 Score=418.18 Aligned_cols=270 Identities=72% Similarity=1.153 Sum_probs=260.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
||+++||+|+|||||+++|++.+|.+.+.+.+.+|++.+|+.+.|++||+|+++....+.|+++.++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 79999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCCCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 185 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 185 (711)
+.++++.+|++|+|+|+.+|++.+++.+|+.+.+.++|+++|+||+|+.+++..+.++++++.++..+.+.++|+++..+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred ceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 005154 186 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 265 (711)
Q Consensus 186 ~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~ 265 (711)
|+|+||++++++|.|... .|..+...++|+.+.+..+++|+.|+|.+++.||+|||+||+|+.++.+++...+++++..
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3666788899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 005154 266 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 296 (711)
Q Consensus 266 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 296 (711)
+.++|||||||.++.|++.||+.|..++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.8e-46 Score=387.31 Aligned_cols=263 Identities=36% Similarity=0.547 Sum_probs=243.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec----CCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~----~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
++|||+|+||+|+|||||+++|++.+|.+.+.|.+. .|++++|+.+.|++||+|+..+...+.|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 479999999999999999999999999999988886 5888999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.+|..++..+++.+|++|+|+|++.++..+++.+|+.+...++|+++|+||+|+..+++.++++++++.|+.+.+++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999998888999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|++.+..|+|++|++.++++.|.....+......++|+++. |.+++.||+|||+|++++.++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222344455565432 7889999999999999999999999999
Q ss_pred HHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 296 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 296 (711)
+++++..+.++|||||||.+|.|++.|||+|.+++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=3e-44 Score=373.75 Aligned_cols=268 Identities=44% Similarity=0.715 Sum_probs=256.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
||+++||+|+|||||+++|++.+|.+.+.|.+..|++.+|+.+.|+++++|+......+.|+++.+++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 79999999999999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCCCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 185 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 185 (711)
+..+++.+|++++|+|++.+...++..+|+++...++|.++|+||+|+...++.+.++++++.++..+++.++|++.+.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 005154 186 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 265 (711)
Q Consensus 186 ~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~ 265 (711)
|.|++|++.++++.|.. |......++|+.+.+...++|..++|.+++.||+|||+||+++.++++++...+++++..
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999965 333566788999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 005154 266 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 296 (711)
Q Consensus 266 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 296 (711)
+.++||+||||+++.|++.|++++.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1.9e-43 Score=359.08 Aligned_cols=237 Identities=41% Similarity=0.653 Sum_probs=221.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
||+++||+|+|||||+++|++.+|.+.+.|.++.|++++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCCCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 185 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 185 (711)
+..+++.+|++++|+|+.+|+..+++.+|+.+.+.++|+++|+||+|+..+++.++++++++.|+.+++|+++|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 005154 186 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 265 (711)
Q Consensus 186 ~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~ 265 (711)
+++.. . .. ...+++|+|.++|.||++||+||+|+.++.+++.+.+++++..
T Consensus 156 ---~~~~~-------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNI-------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeee-------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11110 0 01 1235789999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 005154 266 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 296 (711)
Q Consensus 266 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 296 (711)
+.++|||||||.++.|++.||++|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 30
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.5e-36 Score=329.46 Aligned_cols=274 Identities=27% Similarity=0.399 Sum_probs=219.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+..+||+++||+|||||||+++|+...+.+... ...+...+|+.+.|++||+|+++....+.+++..++|+|||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--KAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--cccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 3457999999999999999999999877754321 11223578999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEec
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
+|...+.+++..+|++++|+|+.+|+..|+++++..+...++| +|+|+||+|+...+ +..+.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~------------- 151 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE------------- 151 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999 56789999986532 1111111
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~l~~~l 158 (409)
T CHL00071 152 -------------------------------------------------------------------------LEVRELL 158 (409)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1222222
Q ss_pred HhhhhcCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCC
Q 005154 260 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 321 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (711)
+........+|++++||++|. |+..|+++|.+++|.|.. +.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~ 218 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER--------------------DTD 218 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC--------------------CCC
Confidence 222222233678888888775 357899999999888754 136
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCC--CCceeecceeEEeccCceeecCeeecCCEEEE--eCCC-
Q 005154 322 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 396 (711)
Q Consensus 322 ~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~--~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 396 (711)
+||.++|++++.+++.|.+++|||++|++++||+|.+.+ .+...+|++|.... +++++|.|||++++ .|++
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCH
Confidence 899999999999999999999999999999999998654 34667899987643 57899999999976 4665
Q ss_pred -ccccCccccCCC
Q 005154 397 -DTITGETLCDAD 408 (711)
Q Consensus 397 -~~~~Gdtl~~~~ 408 (711)
++++||+|++++
T Consensus 295 ~~i~~G~vl~~~~ 307 (409)
T CHL00071 295 EDIERGMVLAKPG 307 (409)
T ss_pred HHcCCeEEEecCC
Confidence 488999999875
No 31
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.1e-36 Score=328.21 Aligned_cols=273 Identities=27% Similarity=0.404 Sum_probs=219.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee-cCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
.++.+||+++||+|||||||+++|+...+. .+.. ..+...+|+.+.|++||+|+++....+.+++..++|||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 345799999999999999999999843322 1111 112246899999999999999998888888899999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
.+|..++.+++..+|++++|+|+.+|+..|+++++..+...++|. |+|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~------------ 151 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH------------
Confidence 999999999999999999999999999999999999999999995 6789999986421 1111111
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T PRK12736 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 112222
Q ss_pred HHhhhhcCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 330 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 330 (711)
++........+|++++||++|. ++..|++++.+++|.|.. +.++||.++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~r~~I~~ 217 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------------------DTDKPFLMPVED 217 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEE
Confidence 2222222234689999999983 688999999999997754 136899999999
Q ss_pred EeecCCCCeEEEEEEEeeEeCCCCEEEeCCC--CceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCccc
Q 005154 331 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 404 (711)
Q Consensus 331 ~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl 404 (711)
++.+++.|++++|||.+|+|++||+|++.+. +...+|++|... ..++++|.|||++++ .|++ ++++|++|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 9999999999999999999999999998765 556789998763 367999999999977 6764 48899999
Q ss_pred cCCC
Q 005154 405 CDAD 408 (711)
Q Consensus 405 ~~~~ 408 (711)
++++
T Consensus 294 ~~~~ 297 (394)
T PRK12736 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9865
No 32
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.5e-35 Score=326.96 Aligned_cols=272 Identities=27% Similarity=0.323 Sum_probs=221.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee---------eecCCC----ccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVHEGT----ATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~---------~~~~g~----~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
++..||+++||+|+|||||+++|++.+|.+...+ ....|+ +.+|+.+.|++||+|++.+...+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3468999999999999999999999999876533 122233 479999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCe-EEEEeccCcCCc----
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 156 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-------~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~---- 156 (711)
+.++|||||||.+|..++..++..+|++|+|||+.+|+ ..||+++|..+..+++|. |+|+||||+...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 589999999999999996 579999996542
Q ss_pred -cHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 157 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 157 -~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
++.++.+++++.|+
T Consensus 165 ~~~~~i~~~i~~~l~----------------------------------------------------------------- 179 (446)
T PTZ00141 165 ERYDEIKKEVSAYLK----------------------------------------------------------------- 179 (446)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 23334444433322
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 303 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 303 (711)
........+|++++||++|.|+. .|+++|... +.|..
T Consensus 180 -------------------------~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~----- 228 (446)
T PTZ00141 180 -------------------------KVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR----- 228 (446)
T ss_pred -------------------------hcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc-----
Confidence 11111122689999999999985 488887654 44422
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCe
Q 005154 304 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 383 (711)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 383 (711)
+.+.|+.+.|..++..++.|+++.|||.+|+|++||+|.+.+.+...+|++|.... .++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~----~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHH----EQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecC----cccCE
Confidence 13689999999999999999999999999999999999999888888999987643 67999
Q ss_pred eecCCEEEE--eCCC--ccccCccccCCC
Q 005154 384 ALAGDIIAL--AGLK--DTITGETLCDAD 408 (711)
Q Consensus 384 a~aGdIv~i--~gl~--~~~~Gdtl~~~~ 408 (711)
|.|||.+++ .+++ ++++|++|++..
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999998 3443 378999999864
No 33
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.8e-35 Score=338.22 Aligned_cols=304 Identities=26% Similarity=0.352 Sum_probs=243.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+.++|+|+||+|||||||+++|.. + .+.. ...+|+|.......+.|+++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~--~------~v~~----------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK--T------NVAA----------GEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--C------Cccc----------cccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 35679999999999999999999962 1 1111 1136889988888899999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEecc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
+|...+.++++.+|++|||||+.+|+.+||.++|.++...++|+|+|+||+|+...+..++..++.+ ++.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~--------- 418 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL--------- 418 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc---------
Confidence 9999999999999999999999999999999999999999999999999999987665554444432 000
Q ss_pred CCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHH
Q 005154 181 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 260 (711)
Q Consensus 181 ~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~ 260 (711)
+.+.|
T Consensus 419 -----------------------------------------------------------~~e~~---------------- 423 (787)
T PRK05306 419 -----------------------------------------------------------VPEEW---------------- 423 (787)
T ss_pred -----------------------------------------------------------cHHHh----------------
Confidence 00000
Q ss_pred hhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeE
Q 005154 261 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 340 (711)
Q Consensus 261 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l 340 (711)
+..+|++++||++|.|+++|+++|...... . ...+++++|+.++|++++.+++.|.+
T Consensus 424 -----g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~-----------------~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 424 -----GGDTIFVPVSAKTGEGIDELLEAILLQAEV-L-----------------ELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred -----CCCceEEEEeCCCCCCchHHHHhhhhhhhh-h-----------------hcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 122689999999999999999999753210 0 01234688999999999999999999
Q ss_pred EEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccCCCCc---------
Q 005154 341 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 410 (711)
Q Consensus 341 ~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~--------- 410 (711)
+++||++|+|++||.|.+.. +.++|+.+.+....++++|.||++|.|.||+++ .+||||+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 456777777777789999999999999999997 999999843211
Q ss_pred ---------------cccccCC--CCC---CeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEE
Q 005154 411 ---------------ILLERMD--FPD---PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 455 (711)
Q Consensus 411 ---------------~~l~~~~--~~~---pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~ 455 (711)
..+..+. ... +.+.+.|.+......+.|.++|.+|..+++.+++-
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~ 620 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII 620 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE
Confidence 1122221 111 26899999999999999999999999999988774
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.5e-35 Score=324.89 Aligned_cols=272 Identities=26% Similarity=0.321 Sum_probs=219.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee--ee----cCC-------CccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EV----HEG-------TATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~--~~----~~g-------~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
+..+||+++||+|||||||+++|++.+|.+.+.+ .+ ..+ ++++|+.+.|++||+|++.+...+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3468999999999999999999999999776532 11 111 4689999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCe-EEEEeccCcCCc----
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 156 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-------~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~---- 156 (711)
+.++|||||||.+|..++..+++.+|++|+|||+.+|. ..||++++..+...++|. ++|+||||+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999873 279999999999999975 678999998622
Q ss_pred -cHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 157 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 157 -~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
++.+++++++..+
T Consensus 165 ~~~~~i~~ei~~~l------------------------------------------------------------------ 178 (447)
T PLN00043 165 ARYDEIVKEVSSYL------------------------------------------------------------------ 178 (447)
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 2333333333322
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 303 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 303 (711)
.+......-+|++++||++|.|+. .|+++|.. +|.|..
T Consensus 179 ------------------------~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~----- 228 (447)
T PLN00043 179 ------------------------KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR----- 228 (447)
T ss_pred ------------------------HHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc-----
Confidence 111111112578888999999874 47888865 454432
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCe
Q 005154 304 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 383 (711)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 383 (711)
+.+.||.+.|..++..++.|+++.|||.+|++++||+|...+.+...+|++|... ..++++
T Consensus 229 ---------------~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~ 289 (447)
T PLN00043 229 ---------------PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQE 289 (447)
T ss_pred ---------------ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCE
Confidence 1368999999999999999999999999999999999999988888899998754 378999
Q ss_pred eecCCEEEE--eCC--CccccCccccCCC
Q 005154 384 ALAGDIIAL--AGL--KDTITGETLCDAD 408 (711)
Q Consensus 384 a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 408 (711)
|.|||.+++ .++ +++++|++|++..
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999999998 455 3478999999863
No 35
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5.7e-35 Score=319.72 Aligned_cols=273 Identities=28% Similarity=0.409 Sum_probs=216.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
.++.+||+++||+|||||||+++|+.... ..|... .+.+.+|+.+.|++||+|++.....+.+++..++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 35579999999999999999999974322 122211 12357899999999999999999988888899999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
.+|..++.+++..+|++++|+|+.+|+..|+++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~------------ 151 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH------------
Confidence 9999999999999999999999999999999999999999999987 579999986432 1111110
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
+++.+.
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T TIGR00485 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111111
Q ss_pred HHhhhhcCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 330 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 330 (711)
++........+|++++||+++. ++..|++++.+++|.|.. +.++||.++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~p~r~~V~~ 217 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------------------ETDKPFLMPIED 217 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 2211111233689999999874 467899999988887754 136899999999
Q ss_pred EeecCCCCeEEEEEEEeeEeCCCCEEEeCC--CCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCccc
Q 005154 331 IMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 404 (711)
Q Consensus 331 ~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~--~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl 404 (711)
++.+++.|++++|||.+|++++||+|...+ .++..+|++|... ..++++|.|||.+++ .|++ ++++|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999999999999999999999999999765 3567789998764 367899999999987 6664 47899999
Q ss_pred cCCC
Q 005154 405 CDAD 408 (711)
Q Consensus 405 ~~~~ 408 (711)
++++
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9864
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2e-34 Score=318.58 Aligned_cols=272 Identities=26% Similarity=0.352 Sum_probs=217.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+..+||+++||+|||||||+++|++..+.+.. ....+...+|+.+.|++||+|++.....+.+++..++|||||||.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 355899999999999999999999988776532 223345679999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCcc--HHHHHHHHHHHhCCcceEEE
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~--~~~~~~~l~~~l~~~~~~~~ 177 (711)
+|..++..++..+|++++|||+.+|+..||++++..+...++| +++++||||+...+ ++...+++++.|
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l-------- 227 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL-------- 227 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999 56789999986522 111222333222
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
T Consensus 228 -------------------------------------------------------------------------------- 227 (478)
T PLN03126 228 -------------------------------------------------------------------------------- 227 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhcCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccC
Q 005154 258 LIRKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 319 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 319 (711)
+........+|++.+||+++. ++..|++.|.++.|.|.. +
T Consensus 228 --~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r--------------------~ 285 (478)
T PLN03126 228 --SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR--------------------Q 285 (478)
T ss_pred --HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------------------c
Confidence 111111122456666666552 256799999988776643 1
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC--ceeecceeEEeccCceeecCeeecCCEEEE--eCC
Q 005154 320 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL 395 (711)
Q Consensus 320 ~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl 395 (711)
.+.||.++|..++..+++|.++.|+|.+|++++||+|++.+.+ ...+|++|.... .++++|.|||.+++ .|+
T Consensus 286 ~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~i 361 (478)
T PLN03126 286 TDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRGI 361 (478)
T ss_pred cccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECC----eECCEEeCCceeeeeccCC
Confidence 3689999999999999999999999999999999999987654 457888887553 68999999999998 565
Q ss_pred Cc--cccCccccCCC
Q 005154 396 KD--TITGETLCDAD 408 (711)
Q Consensus 396 ~~--~~~Gdtl~~~~ 408 (711)
+. +++|++|++++
T Consensus 362 ~~~di~rG~VL~~~~ 376 (478)
T PLN03126 362 QKADIQRGMVLAKPG 376 (478)
T ss_pred cHHHcCCccEEecCC
Confidence 43 78999999875
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.9e-34 Score=315.27 Aligned_cols=272 Identities=27% Similarity=0.390 Sum_probs=216.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
++..||+++||+|||||||+++|++..+. .+... ...+.+|+.+.|++||+|++.....+.+++..++|||||||.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34789999999999999999999864331 11111 123578999999999999999998888888999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHHHHHHHHHHhCCcceEEEec
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
+|..++.+++..+|++++|+|+.+|+..|+++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~------------- 151 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------- 151 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHH-------------
Confidence 999999999999999999999999999999999999999999977 579999986421 1111111
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
+++...+
T Consensus 152 -------------------------------------------------------------------------~ei~~~l 158 (396)
T PRK12735 152 -------------------------------------------------------------------------MEVRELL 158 (396)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0111111
Q ss_pred HhhhhcCcceeeeeccccCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEE
Q 005154 260 RKGTIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 329 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~----------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 329 (711)
.........+|++++||+++ .|+..|+++|.+.+|.|.. +.++||.++|.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------------------~~~~p~r~~I~ 218 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------------------AIDKPFLMPIE 218 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------------------cCCCCeEEEEE
Confidence 11111112367888999888 3788999999999997743 13689999999
Q ss_pred EEeecCCCCeEEEEEEEeeEeCCCCEEEeCCC--CceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCcc
Q 005154 330 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGET 403 (711)
Q Consensus 330 k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdt 403 (711)
.++..++.|+++.|||.+|++++||+|++.+. ++..+|++|... .+++++|.|||.+++ .|++ ++++|++
T Consensus 219 ~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~v 294 (396)
T PRK12735 219 DVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQV 294 (396)
T ss_pred EEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceE
Confidence 99999999999999999999999999997764 456788888753 378999999999998 6664 4889999
Q ss_pred ccCCC
Q 005154 404 LCDAD 408 (711)
Q Consensus 404 l~~~~ 408 (711)
|++++
T Consensus 295 l~~~~ 299 (396)
T PRK12735 295 LAKPG 299 (396)
T ss_pred EEcCC
Confidence 99875
No 38
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-34 Score=298.27 Aligned_cols=274 Identities=27% Similarity=0.355 Sum_probs=221.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee---------eec----CCCccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVH----EGTATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~---------~~~----~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
+...|++++||+|||||||+.+|+|..|.++... ... .-.+.+|..+.|++||+|++.+...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3478999999999999999999999999876510 011 124799999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCCeEE-EEeccCcCCcc---
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRIC-FVNKMDRLGAN--- 157 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip~iv-viNK~D~~~~~--- 157 (711)
+.++++|||||.||..+++.++..+|++||||||..+ +.+||+++.-+++..|+..++ ++||||....+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999988 899999999999999998764 69999998765
Q ss_pred HHHHHHHHHH---HhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHh
Q 005154 158 FFRTRDMIVT---NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 234 (711)
Q Consensus 158 ~~~~~~~l~~---~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~ 234 (711)
++++..++.. .+|.++
T Consensus 165 f~ei~~~v~~l~k~~G~~~------------------------------------------------------------- 183 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNP------------------------------------------------------------- 183 (428)
T ss_pred HHHHHHHHHHHHHHcCCCc-------------------------------------------------------------
Confidence 3333333322 222221
Q ss_pred ccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCC
Q 005154 235 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAM 302 (711)
Q Consensus 235 ~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~ 302 (711)
.-+|.+++||++|.++. .||++|. .+..|..
T Consensus 184 --------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~---- 226 (428)
T COG5256 184 --------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER---- 226 (428)
T ss_pred --------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC----
Confidence 11344455666666543 4777776 5555543
Q ss_pred CCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecC
Q 005154 303 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 382 (711)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 382 (711)
+ -+.||++.|.+++...+.|++..|||-+|.|++||+|+..+.+....|+++..- .++++
T Consensus 227 ---~-------------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~ 286 (428)
T COG5256 227 ---P-------------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEIS 286 (428)
T ss_pred ---C-------------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccc
Confidence 1 379999999999998888999999999999999999999998888888888654 48899
Q ss_pred eeecCCEEEE--eCCC--ccccCccccCCCCcccc
Q 005154 383 VALAGDIIAL--AGLK--DTITGETLCDADHPILL 413 (711)
Q Consensus 383 ~a~aGdIv~i--~gl~--~~~~Gdtl~~~~~~~~l 413 (711)
.+.|||.+.+ .|++ ++++||+++++.+++..
T Consensus 287 ~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~ 321 (428)
T COG5256 287 QAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTV 321 (428)
T ss_pred cCCCCCeEEEEecCCchhccCCccEeccCCCCccc
Confidence 9999999998 5544 48999999998776543
No 39
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.6e-34 Score=313.96 Aligned_cols=271 Identities=28% Similarity=0.370 Sum_probs=216.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...||+++||+|||||||+++|++....... +. ..+...+|+.+.|++||+|+++....+.+++..++|+|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~-~~-~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AE-AKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccC-Cc-ccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 45799999999999999999999864321100 01 11224789999999999999999988888899999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCcc--HHHHHHHHHHHhCCcceEEEe
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|..++..++..+|++++|+|+.+|+..|+++++..+...++|.+ +++||+|+...+ ++...+++++
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~----------- 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE----------- 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999986 589999986421 1111112222
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
.
T Consensus 157 -------------------------------------------------------------------------------~ 157 (396)
T PRK00049 157 -------------------------------------------------------------------------------L 157 (396)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred HHhhhhcCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 328 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 328 (711)
+.........+|++++||+++. |+..|+++|.+.+|.|... .++||.++|
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~--------------------~~~p~r~~I 217 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA--------------------IDKPFLMPI 217 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC--------------------CCCCeEEEE
Confidence 2111111223678888988864 6789999999999877431 368999999
Q ss_pred EEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCC--CceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCc
Q 005154 329 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 402 (711)
Q Consensus 329 ~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gd 402 (711)
..++..++.|.++.|||.+|++++||+|.+.+. ++..+|++|...+ +++++|.|||.+++ .|++ ++++|+
T Consensus 218 ~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~ 293 (396)
T PRK00049 218 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQ 293 (396)
T ss_pred EEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcce
Confidence 999999999999999999999999999987654 5677899887643 67999999999998 6664 478999
Q ss_pred cccCCC
Q 005154 403 TLCDAD 408 (711)
Q Consensus 403 tl~~~~ 408 (711)
+|++++
T Consensus 294 vl~~~~ 299 (396)
T PRK00049 294 VLAKPG 299 (396)
T ss_pred EEecCC
Confidence 999865
No 40
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.9e-34 Score=317.95 Aligned_cols=273 Identities=27% Similarity=0.361 Sum_probs=221.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCccee------------eee-cCCCccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~------------~~~-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
++..||+++||+|||||||+++|++..|.+... |.. ..+++.+|+.+.|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999999999887543 221 2335689999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC--CCChhHHHHHHHHHhcCCC-eEEEEeccCcCCcc---HHHHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN---FFRTR 162 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~--g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~---~~~~~ 162 (711)
+.++|||||||.+|...+..+++.+|++|+|+|+++ ++..++++++..+...++| +++|+||+|+...+ +....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999998888875 78899999987532 11222
Q ss_pred HHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHH
Q 005154 163 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 242 (711)
Q Consensus 163 ~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e 242 (711)
+++++.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222211
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 005154 243 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 310 (711)
Q Consensus 243 ~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~ 310 (711)
.........+|++++||++|.|+++ |+++|.. +|.|..
T Consensus 171 -----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~------------ 220 (425)
T PRK12317 171 -----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEK------------ 220 (425)
T ss_pred -----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCcc------------
Confidence 1111111125789999999999875 7788654 566533
Q ss_pred ccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEE
Q 005154 311 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 390 (711)
Q Consensus 311 ~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv 390 (711)
+.++||.+.|..++..++.|+++.|||.+|++++||+|.+.+.+...+|++|... ..++++|.|||.+
T Consensus 221 --------~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 221 --------PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred --------ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 1368999999999999999999999999999999999999998888899998754 3679999999999
Q ss_pred EE--eCCC--ccccCccccCCCC
Q 005154 391 AL--AGLK--DTITGETLCDADH 409 (711)
Q Consensus 391 ~i--~gl~--~~~~Gdtl~~~~~ 409 (711)
++ .+++ ++.+|++|++++.
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEECCCCHHHccCccEecCCCC
Confidence 87 4554 3789999998754
No 41
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.7e-34 Score=314.36 Aligned_cols=274 Identities=27% Similarity=0.410 Sum_probs=213.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC-ccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~-~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
..++..||+++||+|||||||+++|+... ...|...... ..+|..+.|++||+|+++....+++++.+++|+||||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence 34567999999999999999999996321 1222221112 2689999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
|.+|..++..++..+|++++|+|+.+|+..|+++++..+...++|. |+++||+|+...+ +..+.+.+
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~---------- 201 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM---------- 201 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999995 6789999986421 11111110
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
++.+
T Consensus 202 ----------------------------------------------------------------------------~i~~ 205 (447)
T PLN03127 202 ----------------------------------------------------------------------------ELRE 205 (447)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHhhhhcCcceeeeecccc---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 005154 258 LIRKGTIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 327 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~---~~~G-------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 327 (711)
.+.........+|++++||+ ++.| +..|++++.+++|.|.. +.++||.+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------------------~~~~pfr~~ 265 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------------------VLDKPFLMP 265 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------------------ccccceEee
Confidence 11110011123577777765 4444 78999999999998743 136899999
Q ss_pred EEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCC----CceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccc
Q 005154 328 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTI 399 (711)
Q Consensus 328 V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~----~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~ 399 (711)
|..++..++.|+++.|||.+|++++||+|.+.+. +...+|++|.... .+++++.|||.+++ .|++ +++
T Consensus 266 I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 266 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred EEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 9999999999999999999999999999987643 3467899987653 57899999999998 5664 478
Q ss_pred cCccccCCC
Q 005154 400 TGETLCDAD 408 (711)
Q Consensus 400 ~Gdtl~~~~ 408 (711)
+|++|++++
T Consensus 342 rG~Vl~~~~ 350 (447)
T PLN03127 342 RGQVICKPG 350 (447)
T ss_pred CccEEecCC
Confidence 999999863
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.1e-33 Score=310.12 Aligned_cols=271 Identities=24% Similarity=0.268 Sum_probs=208.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeec-----CC--------CccccchhhhhhcCceeeeeeEEEEecCee
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYWNKHR 90 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~-----~g--------~~~~d~~~~e~~~giti~~~~~~~~~~~~~ 90 (711)
+|+++||+|||||||+++|++.+|.+.. .+.+. .| ++++|+.+.|++||+|++.....+.++++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999998765 22221 23 358999999999999999999999999999
Q ss_pred EEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHHHHHh
Q 005154 91 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNL 169 (711)
Q Consensus 91 i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l~~~l 169 (711)
++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++| +++|+||||+...+ .+.++++.+.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~- 159 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKD- 159 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999999998887 56799999997543 1112222111
Q ss_pred CCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCC
Q 005154 170 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 249 (711)
Q Consensus 170 ~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~ 249 (711)
T Consensus 160 -------------------------------------------------------------------------------- 159 (406)
T TIGR02034 160 -------------------------------------------------------------------------------- 159 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 005154 250 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 317 (711)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~ 317 (711)
+...++... ...+|++++||++|.|+.. |+++|.. +|.|..
T Consensus 160 -----~~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------- 212 (406)
T TIGR02034 160 -----YLAFAEQLG--FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------- 212 (406)
T ss_pred -----HHHHHHHcC--CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC-------------------
Confidence 111111110 1124788899999999874 6666654 444432
Q ss_pred cCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeC--C
Q 005154 318 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG--L 395 (711)
Q Consensus 318 ~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~g--l 395 (711)
+.++|+.+.|..++.....+.-..|+|.+|+|++||+|.+.+.+...+|++|.... .++++|.|||.+++.. .
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD----GDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC----cccCEeCCCCEEEEEECCc
Confidence 12578888777665432222225699999999999999998888889999997543 4689999999999943 2
Q ss_pred CccccCccccCCCCc
Q 005154 396 KDTITGETLCDADHP 410 (711)
Q Consensus 396 ~~~~~Gdtl~~~~~~ 410 (711)
+++.+|++|++++.+
T Consensus 288 ~~i~rG~vl~~~~~~ 302 (406)
T TIGR02034 288 IDISRGDLLAAADSA 302 (406)
T ss_pred cccCCccEEEcCCCC
Confidence 347899999987643
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.1e-32 Score=311.55 Aligned_cols=311 Identities=23% Similarity=0.307 Sum_probs=239.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe-eEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~-~i~liDtPG~~ 100 (711)
.+.++|+++||+|||||||+++|.... . .....+|+|.+.....+.+++. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--V----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--c----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 356899999999999999999996211 0 0011357888888888888655 99999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEecc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
+|...+.++++.+|++++|+|+.+|+.+||.++++++...++|+++++||+|+.+.+..+..+.+.+ ++..
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~-------- 217 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV-------- 217 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh--------
Confidence 9999999999999999999999999999999999999999999999999999977654444333321 0000
Q ss_pred CCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHH
Q 005154 181 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 260 (711)
Q Consensus 181 ~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~ 260 (711)
.+.|
T Consensus 218 ------------------------------------------------------------~~~~---------------- 221 (587)
T TIGR00487 218 ------------------------------------------------------------PEDW---------------- 221 (587)
T ss_pred ------------------------------------------------------------HHhc----------------
Confidence 0000
Q ss_pred hhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeE
Q 005154 261 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 340 (711)
Q Consensus 261 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l 340 (711)
+...|++++||++|.|+++|++++.... ...+ ...++++|+.++|++++.+++.|.+
T Consensus 222 -----~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~~-----------------l~~~~~~~~~~~V~ev~~~~g~G~v 278 (587)
T TIGR00487 222 -----GGDTIFVPVSALTGDGIDELLDMILLQS-EVEE-----------------LKANPNGQASGVVIEAQLDKGRGPV 278 (587)
T ss_pred -----CCCceEEEEECCCCCChHHHHHhhhhhh-hhcc-----------------ccCCCCCCceeEEEEEEEeCCCcEE
Confidence 1124788899999999999999987421 0000 1224578999999999999999999
Q ss_pred EEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccCCCCc---------
Q 005154 341 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 410 (711)
Q Consensus 341 ~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~--------- 410 (711)
++++|++|+|++||.|.+.+. ..+|+.++..+| .++++|.||+++.|.|++++ .+||+|....+.
T Consensus 279 ~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 279 ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999988763 345666655443 57899999999999999986 899999732111
Q ss_pred ---------------cccccCCC-----CCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecCh
Q 005154 411 ---------------ILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 470 (711)
Q Consensus 411 ---------------~~l~~~~~-----~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Ge 470 (711)
..+..+.. ..|.+.+.|.+.+....+.|.++|+++..++|++++-. .|.|.
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~---------~~vG~ 424 (587)
T TIGR00487 354 RAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH---------SGVGG 424 (587)
T ss_pred HHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE---------eecCC
Confidence 11122211 24889999999999999999999999999999988753 55666
Q ss_pred hh
Q 005154 471 LH 472 (711)
Q Consensus 471 lh 472 (711)
++
T Consensus 425 i~ 426 (587)
T TIGR00487 425 IT 426 (587)
T ss_pred Cc
Confidence 64
No 44
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=5e-33 Score=307.91 Aligned_cols=273 Identities=28% Similarity=0.372 Sum_probs=217.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee-------eecCC------CccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EVHEG------TATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~-------~~~~g------~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
++.+||+++||+|||||||+++|++.+|.+.... ....| .+.+|+.+.|++||+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4579999999999999999999999888765321 00112 3579999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC---CChhHHHHHHHHHhcCCC-eEEEEeccCcCCccH---HHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FRT 161 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g---~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~---~~~ 161 (711)
..++|||||||.+|...+..+++.+|++++|+|++++ ...++.+++..+...+++ +++|+||+|+...+. ...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999998 788888887777777764 677999999975331 111
Q ss_pred HHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHH
Q 005154 162 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 241 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~ 241 (711)
.++++
T Consensus 165 ~~ei~--------------------------------------------------------------------------- 169 (426)
T TIGR00483 165 KKEVS--------------------------------------------------------------------------- 169 (426)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11211
Q ss_pred HHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCC
Q 005154 242 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPEN 309 (711)
Q Consensus 242 e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~ 309 (711)
..++........+|++.+||++|.|+.+ |+++|.. +|.|..
T Consensus 170 ---------------~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~----------- 222 (426)
T TIGR00483 170 ---------------NLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK----------- 222 (426)
T ss_pred ---------------HHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC-----------
Confidence 1111111112235788899999999874 8888854 555432
Q ss_pred cccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCE
Q 005154 310 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDI 389 (711)
Q Consensus 310 ~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdI 389 (711)
+.++||.++|..++..++.|+++.|||.+|+++.||+|.+.+.+...+|++|.... .++++|.|||.
T Consensus 223 ---------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~ 289 (426)
T TIGR00483 223 ---------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH----EQIEQAEPGDN 289 (426)
T ss_pred ---------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC----cccCEEcCCCE
Confidence 13689999999999999999999999999999999999999888888999997543 67899999999
Q ss_pred EEE--eCCC--ccccCccccCCCC
Q 005154 390 IAL--AGLK--DTITGETLCDADH 409 (711)
Q Consensus 390 v~i--~gl~--~~~~Gdtl~~~~~ 409 (711)
+++ .+++ ++++|++|++++.
T Consensus 290 v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 290 IGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEEECCCChhhcccceEEecCCC
Confidence 988 5553 4789999998654
No 45
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.1e-32 Score=306.54 Aligned_cols=276 Identities=25% Similarity=0.272 Sum_probs=210.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeec-----CC--------CccccchhhhhhcCceeeeeeEEEEe
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~-----~g--------~~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
+...||+++||+|+|||||+++|++.+|.+.. .+.+. .| .+++|+.+.|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44689999999999999999999999998765 22111 22 35899999999999999999999999
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l 165 (711)
+++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||++++..+...+++ +++|+||||+...+ ...++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888865 67799999987533 1112222
Q ss_pred HHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHh
Q 005154 166 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 245 (711)
Q Consensus 166 ~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l 245 (711)
.+.
T Consensus 184 ~~~----------------------------------------------------------------------------- 186 (474)
T PRK05124 184 RED----------------------------------------------------------------------------- 186 (474)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred cCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 005154 246 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEAT 313 (711)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 313 (711)
+...+.... .....|++++||++|.|+.. |+++| +.+|.|..
T Consensus 187 ---------l~~~~~~~~-~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~--------------- 240 (474)
T PRK05124 187 ---------YLTFAEQLP-GNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV--------------- 240 (474)
T ss_pred ---------HHHHHHhcC-CCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC---------------
Confidence 111111000 01135788899999999864 55543 45555432
Q ss_pred cccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe
Q 005154 314 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 393 (711)
Q Consensus 314 ~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 393 (711)
+.+.|+.+.|..++...+...-..|||.+|+|++||+|.+.+.+...+|++|...+ .++++|.|||.+++.
T Consensus 241 -----~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 241 -----VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITLV 311 (474)
T ss_pred -----CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEEE
Confidence 13678988887776432211224699999999999999999988889999998654 468999999999995
Q ss_pred C--CCccccCccccCCCCc
Q 005154 394 G--LKDTITGETLCDADHP 410 (711)
Q Consensus 394 g--l~~~~~Gdtl~~~~~~ 410 (711)
. ..++++|++|++++.+
T Consensus 312 L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 312 LEDEIDISRGDLLVAADEA 330 (474)
T ss_pred eCCccccCCccEEECCCCC
Confidence 3 3347899999987544
No 46
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=9.4e-33 Score=303.10 Aligned_cols=259 Identities=19% Similarity=0.268 Sum_probs=203.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe--------------
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-------------- 86 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-------------- 86 (711)
.+...||+++||+|||||||+.+|+ | ..+|..++|++||+|++..+..+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt---g------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~ 95 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS---G------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQS 95 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh---C------------CCcccchhhHHhCCchhccccccccccCcccCCcccccc
Confidence 3557899999999999999999995 2 3457889999999999988775521
Q ss_pred -c------------------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-CChhHHHHHHHHHhcCCC-eE
Q 005154 87 -N------------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP-RI 145 (711)
Q Consensus 87 -~------------------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-~~~~t~~~~~~~~~~~ip-~i 145 (711)
. ...++|||||||.+|..++..++..+|++++|||+.++ +++||++++..+...+++ +|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 96 YGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred cCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEE
Confidence 1 24799999999999999999999999999999999986 799999999999989987 57
Q ss_pred EEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHH
Q 005154 146 CFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE 224 (711)
Q Consensus 146 vviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 224 (711)
+|+||+|+...+ ..+..+++++.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~-------------------------------------------------------- 199 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNF-------------------------------------------------------- 199 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 799999987432 12222222211
Q ss_pred HHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCC
Q 005154 225 YRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKG 304 (711)
Q Consensus 225 ~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~ 304 (711)
++.. .....|++++||++|.|++.|+++|.+.+|.|..
T Consensus 200 ----------------------------------l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r------ 237 (460)
T PTZ00327 200 ----------------------------------VKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR------ 237 (460)
T ss_pred ----------------------------------HHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC------
Confidence 1110 0124689999999999999999999999998843
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEeecC--------CCCeEEEEEEEeeEeCCCCEEEeCCCC-------------c
Q 005154 305 TDPENPEATLERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKG-------------K 363 (711)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~--------~~g~l~~~RV~sG~l~~gd~v~~~~~~-------------~ 363 (711)
+.++|+.++|..++... ++|.++.|+|.+|++++||+|.+.+.+ .
T Consensus 238 --------------~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~ 303 (460)
T PTZ00327 238 --------------DLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPI 303 (460)
T ss_pred --------------CCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccc
Confidence 13678899888776433 379999999999999999999988753 2
Q ss_pred eeecceeEEeccCceeecCeeecCCEEEEe-----CCC--ccccCccccCCCCc
Q 005154 364 KERIGRLLEMHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADHP 410 (711)
Q Consensus 364 ~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl~--~~~~Gdtl~~~~~~ 410 (711)
..+|++|... ..++++|.|||.++|. +++ ++.+|++|+.++..
T Consensus 304 ~~~VksI~~~----~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~ 353 (460)
T PTZ00327 304 RTRIVSLFAE----NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKL 353 (460)
T ss_pred eEEEEEEEEC----CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCC
Confidence 3578888753 4789999999999994 332 36789999986543
No 47
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-33 Score=276.11 Aligned_cols=273 Identities=28% Similarity=0.396 Sum_probs=214.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...||+.+||+|||||||+.+|........ +.........|..|.|++|||||..+.+.++..+..+-.+|||||.|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 3478999999999999999999963221100 11111123467789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEec
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p 179 (711)
|.++++.+....|++||||.|.+|.++||++++-.+++.++|.| +|+||+|+.... +.+.+
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelV----------------- 150 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELV----------------- 150 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHH-----------------
Confidence 99999999999999999999999999999999999999999876 579999997632 11111
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
+.|+++.|
T Consensus 151 ------------------------------------------------------------------------emEvreLL 158 (394)
T COG0050 151 ------------------------------------------------------------------------EMEVRELL 158 (394)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 12333333
Q ss_pred HhhhhcCcceeeeeccccCCCC--------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 005154 260 RKGTIAGSFVPVLCGSAFKNKG--------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 331 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~G--------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 331 (711)
...-..+...|+..+||++-.- |.+|++++.+++|.|... .+.||.+.|-.+
T Consensus 159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~--------------------~dkPflmpvEdv 218 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD--------------------IDKPFLMPVEDV 218 (394)
T ss_pred HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc--------------------ccccccccceee
Confidence 3334445567899999886422 679999999999999762 479999999999
Q ss_pred eecCCCCeEEEEEEEeeEeCCCCEEEeCCCC--ceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCcccc
Q 005154 332 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLC 405 (711)
Q Consensus 332 ~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~ 405 (711)
+...++|++++|||-.|+|+.|+.+....-. ++..++.+-++ ++..++..|||.+++ .|.+ ++..|.+|+
T Consensus 219 fsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 219 FSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred EEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEee
Confidence 9999999999999999999999999876543 33445555444 256889999999887 4543 578899998
Q ss_pred CCCC
Q 005154 406 DADH 409 (711)
Q Consensus 406 ~~~~ 409 (711)
.++.
T Consensus 295 kpgs 298 (394)
T COG0050 295 KPGS 298 (394)
T ss_pred cCCc
Confidence 7653
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=282.63 Aligned_cols=272 Identities=29% Similarity=0.403 Sum_probs=219.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee-eecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~-~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
+...||+-+||+|||||||+.+++.-. ...| ...-...-.|..|+|+.|||||....+.++...+.+--+|||||.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkil---a~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKIL---AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHH---HhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 446899999999999999999995221 1111 111112456888999999999999999998889999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC-ccHHHHHHHHHHHhCCcceEEEe
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~-~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
||+++++.+....|++|+||.+++|..+||++++-++++.|++.+ +|+||.|... .+..+.++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE--------------- 193 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE--------------- 193 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHH---------------
Confidence 999999999999999999999999999999999999999999976 5799999873 32111111
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
=|+++.
T Consensus 194 --------------------------------------------------------------------------mE~REl 199 (449)
T KOG0460|consen 194 --------------------------------------------------------------------------MEIREL 199 (449)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 134444
Q ss_pred HHhhhhcCcceeeeeccccCC-------CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKN-------KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 328 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~-------~G---i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 328 (711)
|......+..+||++|||+-- .| |..|||++.+|+|.|.. +-+.||.+-|
T Consensus 200 Lse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--------------------~~~~pFl~pi 259 (449)
T KOG0460|consen 200 LSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--------------------DLDKPFLLPI 259 (449)
T ss_pred HHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--------------------ccCCCceeeh
Confidence 444445566789999999842 23 67899999999999976 2379999999
Q ss_pred EEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCc--eeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCc
Q 005154 329 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 402 (711)
Q Consensus 329 ~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gd 402 (711)
-.+++.+++|+++.||+-.|+|++|+++.+...++ +..|+.|.+++ ..+++|.|||.+++ .|++ +++.|.
T Consensus 260 e~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGm 335 (449)
T KOG0460|consen 260 EDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGM 335 (449)
T ss_pred hheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhccc
Confidence 99999999999999999999999999998766554 45677776654 66999999999997 6665 589999
Q ss_pred cccCCCC
Q 005154 403 TLCDADH 409 (711)
Q Consensus 403 tl~~~~~ 409 (711)
+++.++.
T Consensus 336 vl~~pGs 342 (449)
T KOG0460|consen 336 VLAKPGS 342 (449)
T ss_pred EEecCCc
Confidence 9988765
No 49
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.2e-31 Score=306.31 Aligned_cols=295 Identities=22% Similarity=0.292 Sum_probs=223.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----cCeeEEEEeCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTP 97 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~----~~~~i~liDtP 97 (711)
.+.++|+|+||+|||||||+++|....... ...+|+|.......+.+ .++.++|||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTP 303 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTP 303 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEECC
Confidence 467999999999999999999997433221 12256776666555555 35899999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|...+.++++.+|++|+|||+.+|+.+||.+++..+...++|+|+|+||+|+...+..++.+++... +.
T Consensus 304 Ghe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l------ 376 (742)
T CHL00189 304 GHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL------ 376 (742)
T ss_pred cHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc------
Confidence 99999999999999999999999999999999999999999999999999999999876544433333210 00
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
+ .++
T Consensus 377 --------------------------------------------------------------l-----------~e~--- 380 (742)
T CHL00189 377 --------------------------------------------------------------I-----------PEK--- 380 (742)
T ss_pred --------------------------------------------------------------c-----------hHh---
Confidence 0 000
Q ss_pred HHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 005154 258 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 337 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~ 337 (711)
.+..+|++++||++|.|+++|+++|..+...+. ..++++.|+.++|+++..+++.
T Consensus 381 -------~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 381 -------WGGDTPMIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred -------hCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCCC
Confidence 022468999999999999999999987643211 1234578999999999999999
Q ss_pred CeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCC-ccccCccccCCCCcc-----
Q 005154 338 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLK-DTITGETLCDADHPI----- 411 (711)
Q Consensus 338 g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-~~~~Gdtl~~~~~~~----- 411 (711)
|.+++++|++|+|++||.|.+.+ +.++|+.+.+....++++|.||++|.|.|++ ...+||+|.--.+.-
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~ 510 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLK 510 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHH
Confidence 99999999999999999998875 3456677777777899999999999999995 478999996332110
Q ss_pred ----------------ccccC-----CCCCCeEEEEEEeCCCcCHHHHHHHHHHHHh
Q 005154 412 ----------------LLERM-----DFPDPVIKVAIEPKTKADIDKMANGLIKLAQ 447 (711)
Q Consensus 412 ----------------~l~~~-----~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~ 447 (711)
.+..+ .-..+.+.+.|.+....-.+.|.++|.++..
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~ 567 (742)
T CHL00189 511 IIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQ 567 (742)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCC
Confidence 00000 0123567777777777777777777777643
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.4e-31 Score=301.80 Aligned_cols=251 Identities=21% Similarity=0.256 Sum_probs=205.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCchHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~df~~ 104 (711)
.|+++||+|||||||+++|+ | ..+|..+.|++||+|+......+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 58999999999999999994 2 2357788999999999998877765 457899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEeccCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGA 182 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~~ 182 (711)
++..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ +....+++++.+
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l------------- 133 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL------------- 133 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999996 6899999986432 222222222111
Q ss_pred CCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 005154 183 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 262 (711)
Q Consensus 183 ~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~ 262 (711)
...
T Consensus 134 -----------------------------------------------------------------------------~~~ 136 (614)
T PRK10512 134 -----------------------------------------------------------------------------REY 136 (614)
T ss_pred -----------------------------------------------------------------------------Hhc
Confidence 100
Q ss_pred hhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEE
Q 005154 263 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 342 (711)
Q Consensus 263 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~ 342 (711)
.....|++++||++|.|++.|++.|.++. .|.. +.++|+.++|..++..++.|+++.
T Consensus 137 --~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~--------------------~~~~~~rl~Id~vf~v~G~GtVvt 193 (614)
T PRK10512 137 --GFAEAKLFVTAATEGRGIDALREHLLQLP-EREH--------------------AAQHRFRLAIDRAFTVKGAGLVVT 193 (614)
T ss_pred --CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-cccc--------------------CcCCCceEEEEEEeccCCCeEEEE
Confidence 01125799999999999999999998764 3322 036899999999999999999999
Q ss_pred EEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eC-CC--ccccCccccCCC
Q 005154 343 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 408 (711)
Q Consensus 343 ~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~Gdtl~~~~ 408 (711)
|+|.+|++++||+|.+.+.+...+|++|... ..++++|.||+.+++ .| ++ +++.||+|++++
T Consensus 194 Gtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 194 GTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEecceEecCCEEEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 9999999999999999888888889888754 267999999999988 44 43 478999999763
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.98 E-value=2.3e-30 Score=283.71 Aligned_cols=259 Identities=22% Similarity=0.318 Sum_probs=202.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-------------- 87 (711)
++..||+++||+|||||||+++|. + .++|+.+.|++||+|+......+.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~---~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT---G------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh---C------------eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 346899999999999999999993 2 24789999999999999876554432
Q ss_pred ------------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCCC-eEEEEeccCc
Q 005154 88 ------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDR 153 (711)
Q Consensus 88 ------------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~ip-~ivviNK~D~ 153 (711)
.+.++|||||||.+|..++..++..+|++++|+|++++. ..++..++..+...+++ +++|+||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 268999999999999999999999999999999999988 78999999888888874 7888999998
Q ss_pred CCccH-HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHH
Q 005154 154 LGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIET 232 (711)
Q Consensus 154 ~~~~~-~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~ 232 (711)
...+. ....+++.+.
T Consensus 152 ~~~~~~~~~~~~i~~~---------------------------------------------------------------- 167 (411)
T PRK04000 152 VSKERALENYEQIKEF---------------------------------------------------------------- 167 (411)
T ss_pred ccchhHHHHHHHHHHH----------------------------------------------------------------
Confidence 65321 1111111111
Q ss_pred HhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 005154 233 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 312 (711)
Q Consensus 233 l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~ 312 (711)
+... .....|++.+||++|.|++.|++.|.+.+|.|..
T Consensus 168 --------------------------l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~-------------- 205 (411)
T PRK04000 168 --------------------------VKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER-------------- 205 (411)
T ss_pred --------------------------hccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC--------------
Confidence 0000 0112588999999999999999999999887743
Q ss_pred ccccccCCCCCeEEEEEEEeec--------CCCCeEEEEEEEeeEeCCCCEEEeCCCCc------------eeecceeEE
Q 005154 313 TLERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLE 372 (711)
Q Consensus 313 ~~~~~~~~~~p~~~~V~k~~~~--------~~~g~l~~~RV~sG~l~~gd~v~~~~~~~------------~~~v~~i~~ 372 (711)
+.+.|+.+.|..++.. +++|.+..|||.+|++++||.|.+.+.+. ..+|++|..
T Consensus 206 ------~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~ 279 (411)
T PRK04000 206 ------DLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA 279 (411)
T ss_pred ------CCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE
Confidence 1368899999988743 34678999999999999999999887542 357888864
Q ss_pred eccCceeecCeeecCCEEEEe-----CCC--ccccCccccCCCCcc
Q 005154 373 MHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADHPI 411 (711)
Q Consensus 373 ~~g~~~~~v~~a~aGdIv~i~-----gl~--~~~~Gdtl~~~~~~~ 411 (711)
. ..++++|.|||.+++. +++ ++.+|++|++++.++
T Consensus 280 ~----~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~ 321 (411)
T PRK04000 280 G----GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLP 321 (411)
T ss_pred C----CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCC
Confidence 4 3779999999999984 332 367899999876543
No 52
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=299.83 Aligned_cols=275 Identities=25% Similarity=0.242 Sum_probs=208.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCccee--e-----eecCCC--------ccccchhhhhhcCceeeeeeEEEEe
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--G-----EVHEGT--------ATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~--~-----~~~~g~--------~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
....+|+|+||+|||||||+++|++..|.+... + ....|+ +.+|..+.|++||+|++.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345689999999999999999999999887621 1 112332 5889999999999999999999999
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l 165 (711)
++..++|||||||.+|...+..++..+|++++|||+.+|+..|+++++..+...+++ +++|+||+|+...+.. .++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i 180 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFDEI 180 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999888865 5678999998653211 11111
Q ss_pred HHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHh
Q 005154 166 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 245 (711)
Q Consensus 166 ~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l 245 (711)
..
T Consensus 181 ~~------------------------------------------------------------------------------ 182 (632)
T PRK05506 181 VA------------------------------------------------------------------------------ 182 (632)
T ss_pred HH------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 005154 246 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPEAT 313 (711)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 313 (711)
++...+.+.. ....|++++||++|.|+. .|++.|.. +|.|..
T Consensus 183 --------~i~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~--------------- 236 (632)
T PRK05506 183 --------DYRAFAAKLG--LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASD--------------- 236 (632)
T ss_pred --------HHHHHHHHcC--CCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCC---------------
Confidence 1111111100 012467888999999986 46766654 443322
Q ss_pred cccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe
Q 005154 314 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 393 (711)
Q Consensus 314 ~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 393 (711)
..++|+.+.|..++...+...-..|+|.+|+|++||+|.+.+.+...+|++|...+ .++++|.|||.+++.
T Consensus 237 -----~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~i~ 307 (632)
T PRK05506 237 -----RNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD----GDLDEAFAGQAVTLT 307 (632)
T ss_pred -----cCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECC----ceeCEEcCCCeEEEE
Confidence 12678888887776533222225699999999999999999888889999997543 458999999999994
Q ss_pred C--CCccccCccccCCCCc
Q 005154 394 G--LKDTITGETLCDADHP 410 (711)
Q Consensus 394 g--l~~~~~Gdtl~~~~~~ 410 (711)
- -.++++|++|++++.+
T Consensus 308 l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 308 LADEIDISRGDMLARADNR 326 (632)
T ss_pred ecCccccCCccEEecCCCC
Confidence 3 2347899999987654
No 53
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=6e-30 Score=280.74 Aligned_cols=257 Identities=22% Similarity=0.327 Sum_probs=200.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------- 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------------- 87 (711)
...||+++||+|||||||+++|. + ..+|..+.|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---C------------eecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 46799999999999999999994 1 24688999999999999886654321
Q ss_pred -----------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCCC-eEEEEeccCcC
Q 005154 88 -----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRL 154 (711)
Q Consensus 88 -----------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~ip-~ivviNK~D~~ 154 (711)
+..+++||||||.+|..++..++..+|++++|||+++|. ..|+++++..+...+++ +++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 468999999999999999999999999999999999998 88999999988888775 68889999987
Q ss_pred CccH-HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHH
Q 005154 155 GANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 233 (711)
Q Consensus 155 ~~~~-~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l 233 (711)
..+. ....+++.+
T Consensus 148 ~~~~~~~~~~~i~~------------------------------------------------------------------ 161 (406)
T TIGR03680 148 SKEKALENYEEIKE------------------------------------------------------------------ 161 (406)
T ss_pred CHHHHHHHHHHHHh------------------------------------------------------------------
Confidence 5321 111111111
Q ss_pred hccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 005154 234 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 313 (711)
Q Consensus 234 ~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 313 (711)
.+.... ...+|++++||++|.|++.|+++|...+|.|..
T Consensus 162 ------------------------~l~~~~--~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~--------------- 200 (406)
T TIGR03680 162 ------------------------FVKGTV--AENAPIIPVSALHNANIDALLEAIEKFIPTPER--------------- 200 (406)
T ss_pred ------------------------hhhhcc--cCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC---------------
Confidence 000000 112589999999999999999999999987743
Q ss_pred cccccCCCCCeEEEEEEEeec--------CCCCeEEEEEEEeeEeCCCCEEEeCCCCc------------eeecceeEEe
Q 005154 314 LERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEM 373 (711)
Q Consensus 314 ~~~~~~~~~p~~~~V~k~~~~--------~~~g~l~~~RV~sG~l~~gd~v~~~~~~~------------~~~v~~i~~~ 373 (711)
+.+.|+.++|..++.. +++|.+..|||.+|+|++||+|.+.+.+. ..+|++|...
T Consensus 201 -----~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~ 275 (406)
T TIGR03680 201 -----DLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG 275 (406)
T ss_pred -----CCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC
Confidence 1367899999988743 33678999999999999999999876531 3468887654
Q ss_pred ccCceeecCeeecCCEEEEe-----CCC--ccccCccccCCCCc
Q 005154 374 HANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADHP 410 (711)
Q Consensus 374 ~g~~~~~v~~a~aGdIv~i~-----gl~--~~~~Gdtl~~~~~~ 410 (711)
..++++|.|||.++|. +++ ++.+|++|++++..
T Consensus 276 ----~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~ 315 (406)
T TIGR03680 276 ----GYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTL 315 (406)
T ss_pred ----CEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCC
Confidence 3789999999999983 332 36789999987543
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=3.7e-31 Score=260.79 Aligned_cols=145 Identities=37% Similarity=0.491 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE--ecCeeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~--~~~~~i~liDtPG~ 99 (711)
+++|||+++||+|||||||+++|++..+.....+....+++..|..+.|+++|+|+......+. +.++.++|||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3689999999999999999999999988776654433334578999999999999999999999 99999999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHH
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 166 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~ 166 (711)
.+|..++.++++.+|++|+|||+.+|+..++++++..+...++|+++|+||||+...++.+.++++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998555544444444
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.4e-29 Score=288.03 Aligned_cols=253 Identities=22% Similarity=0.269 Sum_probs=205.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++||+|||||||+++|+ | ..+|..+.|.++|+|+......+.+++..++|||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g------------~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---G------------IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---C------------ccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 79999999999999999995 2 11466788999999999999889998999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccH-HHHHHHHHHHhCCcceEEEeccCCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAE 183 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~-~~~~~~l~~~l~~~~~~~~~p~~~~ 183 (711)
+..++..+|++++|||+++|+.+|+.+++..+...++| +++|+||+|+...+. ....+++++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~---------------- 130 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQ---------------- 130 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHH----------------
Confidence 99999999999999999999999999999999999999 999999999875321 111111111
Q ss_pred CCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 005154 184 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 263 (711)
Q Consensus 184 ~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~ 263 (711)
.+....
T Consensus 131 --------------------------------------------------------------------------~l~~~~ 136 (581)
T TIGR00475 131 --------------------------------------------------------------------------ILNSYI 136 (581)
T ss_pred --------------------------------------------------------------------------HHHHhC
Confidence 111100
Q ss_pred hcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEE
Q 005154 264 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 343 (711)
Q Consensus 264 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~ 343 (711)
.....|++.+||++|.|++++++.+.+.++..... ..++|+.+.|..++..++.|+++.|
T Consensus 137 -~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 137 -FLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred -CCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 00125789999999999999999988776443210 1368999999999999999999999
Q ss_pred EEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCccccCC
Q 005154 344 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDA 407 (711)
Q Consensus 344 RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~ 407 (711)
+|.+|++++||+|.+.+.+...+|++|... ..++++|.||+.++| .|++ ++.+|.+++++
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 999999999999999998888999999754 367999999999999 4554 26788555543
No 56
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.3e-29 Score=260.41 Aligned_cols=249 Identities=24% Similarity=0.340 Sum_probs=211.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
.|+..||++||||||+.++. ...+|..+.|++||+|++.....+...++.+.|||+|||.+|...
T Consensus 2 ii~t~GhidHgkT~L~~alt---------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 68999999999999999994 245788999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEeccCCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 183 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~~~ 183 (711)
+..++...|+++||||+.+|++.||.+++..+...+++. ++|+||+|+.+.. ..+..+++.+.+.
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~------------- 133 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS------------- 133 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc-------------
Confidence 999999999999999999999999999999999999998 8899999997632 2222222221110
Q ss_pred CCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 005154 184 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 263 (711)
Q Consensus 184 ~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~ 263 (711)
T Consensus 134 -------------------------------------------------------------------------------- 133 (447)
T COG3276 134 -------------------------------------------------------------------------------- 133 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEE
Q 005154 264 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 343 (711)
Q Consensus 264 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~ 343 (711)
-...|++..|+.+|.||++|-+.|.+..- +.+ .+.++||..+|...+..+++|+++.|
T Consensus 134 --l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 --LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred --cccccccccccccCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEe
Confidence 01146889999999999999999988764 211 13489999999999999999999999
Q ss_pred EEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCccccCCC
Q 005154 344 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 408 (711)
Q Consensus 344 RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~~ 408 (711)
.++||++++||+++..+.++..+|++|.... +++++|.||+-|++ .|.+ ++..|+.|.+++
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999999999999999987544 67999999999998 3442 367899888764
No 57
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.2e-28 Score=257.46 Aligned_cols=295 Identities=24% Similarity=0.328 Sum_probs=231.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~ 100 (711)
.|.+.|-|+||+|||||||+++|....-+... ..|||.+...+.... ++..++|+|||||.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E------------------~GGITQhIGAF~V~~p~G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE------------------AGGITQHIGAFTVTLPSGKSITFLDTPGHA 212 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh------------------cCCccceeceEEEecCCCCEEEEecCCcHH
Confidence 46789999999999999999999522211111 247888877776655 67899999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEecc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
-|.....|+...+|.+++||.+.+|+.+||.+.+.+++..++|+++.+||+|++++++.+++.+|... |+.
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~-------- 283 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIV-------- 283 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Ccc--------
Confidence 99999999999999999999999999999999999999999999999999999999988888877531 110
Q ss_pred CCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHH
Q 005154 181 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 260 (711)
Q Consensus 181 ~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~ 260 (711)
+|.|
T Consensus 284 ------------------------------------------------------------~E~~---------------- 287 (683)
T KOG1145|consen 284 ------------------------------------------------------------VEDL---------------- 287 (683)
T ss_pred ------------------------------------------------------------HHHc----------------
Confidence 0111
Q ss_pred hhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeE
Q 005154 261 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 340 (711)
Q Consensus 261 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l 340 (711)
+.-++++..||++|.|++.|.+++.-.. .....+.+|++|+-++|....-++++|.+
T Consensus 288 -----GGdVQvipiSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 288 -----GGDVQVIPISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred -----CCceeEEEeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccce
Confidence 2226788999999999999998887431 11124456899999999999999999999
Q ss_pred EEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccCCCCc---------
Q 005154 341 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 410 (711)
Q Consensus 341 ~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~--------- 410 (711)
+..-|-.|||++|+.|.... .-.||+.++-..| .++++|.||.-+-|.|.+++ ..||-+..-+..
T Consensus 345 aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~ 419 (683)
T KOG1145|consen 345 ATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSK 419 (683)
T ss_pred eEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999987653 2357888887776 67999999999999999885 788876321100
Q ss_pred ------------------------------cccc--------cCC--CCCCeEEEEEEeCCCcCHHHHHHHHHHHHh
Q 005154 411 ------------------------------ILLE--------RMD--FPDPVIKVAIEPKTKADIDKMANGLIKLAQ 447 (711)
Q Consensus 411 ------------------------------~~l~--------~~~--~~~pv~~~~iep~~~~d~~~L~~~L~~l~~ 447 (711)
-... .+. ...|.+.+.|.-......+.+.++|+-|.-
T Consensus 420 R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~ 496 (683)
T KOG1145|consen 420 RKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNS 496 (683)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCC
Confidence 0000 122 225778888888888888888888877763
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.8e-28 Score=261.69 Aligned_cols=253 Identities=28% Similarity=0.361 Sum_probs=202.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---CeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~i~liDtPG~ 99 (711)
+.+.|+++||+|||||||++.+-..+ +..| ...|||.+.....+.++ ...++|||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--------Va~~----------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--------VAAG----------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--------cccc----------cCCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 46889999999999999999995211 1111 13488999999988884 469999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEec
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
.-|.....++...+|+++||||+.+|+.+||.+.+++++..++|+++++||+|++.+++.....++++. |..+
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~------ 138 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVP------ 138 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCH------
Confidence 999999999999999999999999999999999999999999999999999999999888777777642 2110
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
|.|
T Consensus 139 --------------------------------------------------------------E~~--------------- 141 (509)
T COG0532 139 --------------------------------------------------------------EEW--------------- 141 (509)
T ss_pred --------------------------------------------------------------hhc---------------
Confidence 011
Q ss_pred HhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCe
Q 005154 260 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 339 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 339 (711)
+..+.++.+||++|.|+++||+++.-.. .....+.+++++..+.|..+..+++.|.
T Consensus 142 ------gg~v~~VpvSA~tg~Gi~eLL~~ill~a------------------ev~elka~~~~~a~gtviE~~~dkG~G~ 197 (509)
T COG0532 142 ------GGDVIFVPVSAKTGEGIDELLELILLLA------------------EVLELKANPEGPARGTVIEVKLDKGLGP 197 (509)
T ss_pred ------CCceEEEEeeccCCCCHHHHHHHHHHHH------------------HHHhhhcCCCCcceEEEEEEEeccCCCc
Confidence 1225688899999999999999987431 0112445678999999999999999999
Q ss_pred EEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccC
Q 005154 340 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCD 406 (711)
Q Consensus 340 l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~ 406 (711)
++..-|+.|||++||.|....... +| +.+.-....+++.+.++--+-+.|++++ ..||.+..
T Consensus 198 vatviv~~GtL~~GD~iv~g~~~g--~I---~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v 260 (509)
T COG0532 198 VATVIVQDGTLKKGDIIVAGGEYG--RV---RTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIV 260 (509)
T ss_pred eEEEEEecCeEecCCEEEEccCCC--ce---EEeehhcCCCccccCCCCCeEEeccccccccCceEEe
Confidence 999999999999999998766432 33 3344445577888888888888888774 55766644
No 59
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.7e-28 Score=245.90 Aligned_cols=129 Identities=48% Similarity=0.632 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec----------CeeEEEE
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHRINII 94 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------~~~i~li 94 (711)
|||+++||+|||||||+++|++.+|.+.... ...++++|+.+.|++||+|++++..++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 7999999999999999999999998765442 223578999999999999999999888886 7899999
Q ss_pred eCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 95 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 95 DtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|||||.+|..++..+++.+|++++|+|+.+|+..+++.+++++...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 60
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=241.57 Aligned_cols=285 Identities=23% Similarity=0.313 Sum_probs=220.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC----ccccchhhhhhcCceeeeeeEEEEec-----------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWN----------- 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~----~~~d~~~~e~~~giti~~~~~~~~~~----------- 87 (711)
...+|+.+||+|||||||+.+|. + |..++|. .+.|..+.|.++|.|...+..-+-++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~Lv--t------G~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPl 187 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLV--T------GRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPL 187 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEE--e------cCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcc
Confidence 36899999999999999999996 3 4445543 68899999999999988887776652
Q ss_pred ------------CeeEEEEeCCCCCchHHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 88 ------------KHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 88 ------------~~~i~liDtPG~~df~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
+..+.|+||-||+.+...+++++- ..|..+++|.|.+|++..|++++..+..+++|+|++++|+|+
T Consensus 188 d~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 188 DEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred cHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEeccc
Confidence 356899999999999999999985 459999999999999999999999999999999999999999
Q ss_pred CCcc-HHHHHHHHHHHhCC-cceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHH
Q 005154 154 LGAN-FFRTRDMIVTNLGA-KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIE 231 (711)
Q Consensus 154 ~~~~-~~~~~~~l~~~l~~-~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e 231 (711)
...+ ++.+.+++.+.|.. ..+|+.+-
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk---------------------------------------------------- 295 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVK---------------------------------------------------- 295 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeee----------------------------------------------------
Confidence 7644 67777777776643 11111110
Q ss_pred HHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcc
Q 005154 232 TIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPE 311 (711)
Q Consensus 232 ~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~ 311 (711)
+..+...+....-....++|+|.+|+.+|.|++ +|+-+..+||.-..
T Consensus 296 -------------------~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~------------- 342 (527)
T COG5258 296 -------------------DTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR------------- 342 (527)
T ss_pred -------------------ccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc-------------
Confidence 000111111111112347899999999999997 66667777776531
Q ss_pred cccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC----ceeecceeEEeccCceeecCeeecC
Q 005154 312 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVALAG 387 (711)
Q Consensus 312 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~----~~~~v~~i~~~~g~~~~~v~~a~aG 387 (711)
.+..+||.|||.|+++..++|.++.|.|-||.|+.||+++..+.. ...+|++|..- ..+|++|.||
T Consensus 343 ------~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa~aG 412 (527)
T COG5258 343 ------WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSAKAG 412 (527)
T ss_pred ------cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccccCC
Confidence 124799999999999999999999999999999999999976643 34568877643 3679999999
Q ss_pred CEEEE--eCCCc--cccCccccCCCCc
Q 005154 388 DIIAL--AGLKD--TITGETLCDADHP 410 (711)
Q Consensus 388 dIv~i--~gl~~--~~~Gdtl~~~~~~ 410 (711)
+|+++ .|++. +++|.+++....|
T Consensus 413 ~iig~Al~gv~~e~lerGMVl~~~~~p 439 (527)
T COG5258 413 SIIGIALKGVEKEELERGMVLSAGADP 439 (527)
T ss_pred cEEEEEecccCHHHHhcceEecCCCCc
Confidence 99987 56654 7899999876444
No 61
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=5.3e-27 Score=266.15 Aligned_cols=303 Identities=21% Similarity=0.264 Sum_probs=191.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee--cCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
|.+.|+++||+|||||||+++|..........+.. .-|.+..++...+...|.+.......+.+ ..++|||||||.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI--PGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc--CCEEEEECCChH
Confidence 46789999999999999999996332221122111 11122222211122222221110011111 137999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc-cHHHHHHHHHHHhCCcceEEEec
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~-~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
+|...+.++++.+|++++|+|+++|+..++.+++..+...++|+++++||+|+... ...... .+.+.+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~-~~~e~~~--------- 152 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDA-PFLESIE--------- 152 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCc-hHHHHHh---------
Confidence 99999999999999999999999999999999999999999999999999998521 100000 0000000
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
.-+....+.+.+...++. .+|.+..+..+.+.. +
T Consensus 153 ---------------------------------~~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 153 ---------------------------------KQSQRVQQELEEKLYELI------------GQLSELGFSADRFDR-V 186 (586)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhhh-h
Confidence 000000111111111111 133333333333222 1
Q ss_pred HhhhhcCcceeeeeccccCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 005154 260 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 335 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~----~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 335 (711)
+. ....+|++++||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.++
T Consensus 187 ~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~~~~ 244 (586)
T PRK04004 187 KD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVKEER 244 (586)
T ss_pred hc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEEEeC
Confidence 11 134478999999999999999988864 3444433 235789999999999999
Q ss_pred CCCeEEEEEEEeeEeCCCCEEEeCCCCc--eeecceeEEec--------cCceeecCeeecCCEEEE--eCCCccccCcc
Q 005154 336 FVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGET 403 (711)
Q Consensus 336 ~~g~l~~~RV~sG~l~~gd~v~~~~~~~--~~~v~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~Gdt 403 (711)
+.|++++++|.+|+|++||.|...+.+. ..+|+.|.... ++....++++.|..-+-+ .|++++..|+.
T Consensus 245 g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~ 324 (586)
T PRK04004 245 GLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSP 324 (586)
T ss_pred CCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCe
Confidence 9999999999999999999999877654 35888888762 123456777777665555 48877777776
Q ss_pred cc
Q 005154 404 LC 405 (711)
Q Consensus 404 l~ 405 (711)
+.
T Consensus 325 ~~ 326 (586)
T PRK04004 325 LR 326 (586)
T ss_pred EE
Confidence 54
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=241.75 Aligned_cols=290 Identities=24% Similarity=0.286 Sum_probs=207.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcce-----ee----------eecCCCccccchhhhhhcCceeeeeeEEEEec
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-----IG----------EVHEGTATMDWMEQEQERGITITSAATTTYWN 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~-----~~----------~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~ 87 (711)
...+++.+|++|.|||||+.+|++.+..+.. .. ...+-....|-...|++.||||+.+...|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4678899999999999999999998875422 00 11111246677889999999999999999999
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEE-EEeccCcCCcc---HHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGAN---FFRTRD 163 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~iv-viNK~D~~~~~---~~~~~~ 163 (711)
..++.+.|||||+.|..+|..+.+-||.+|++|||..|+..||+.|--.+.-+|++.++ .+||||+.+.+ ++++.+
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 59999998765 222222
Q ss_pred HHH---HHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHH
Q 005154 164 MIV---TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 240 (711)
Q Consensus 164 ~l~---~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l 240 (711)
+.. +.|+....
T Consensus 165 dy~~fa~~L~~~~~------------------------------------------------------------------ 178 (431)
T COG2895 165 DYLAFAAQLGLKDV------------------------------------------------------------------ 178 (431)
T ss_pred HHHHHHHHcCCCcc------------------------------------------------------------------
Confidence 221 12222111
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCC
Q 005154 241 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPE 308 (711)
Q Consensus 241 ~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~ 308 (711)
-.++.||+.|.++. .||+.+-..-...
T Consensus 179 -----------------------------~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~------------ 217 (431)
T COG2895 179 -----------------------------RFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIAD------------ 217 (431)
T ss_pred -----------------------------eEEechhccCCcccccccCCCcccCccHHHHHhhccccc------------
Confidence 12334666665542 2333332211111
Q ss_pred CcccccccccCCCCCeEEEEEEEeecCCCCeEEE-EEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecC
Q 005154 309 NPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF-VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAG 387 (711)
Q Consensus 309 ~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~-~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG 387 (711)
....+||++.|--+.. |+..+-.| |+|-||++++||.|.+.+.|+..+|++|..+.| ++++|.||
T Consensus 218 ---------~~~~~~~RfPVQ~V~R-p~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG 283 (431)
T COG2895 218 ---------DRSAKAFRFPVQYVNR-PNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAG 283 (431)
T ss_pred ---------cccccceeeceEEecC-CCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCC
Confidence 1134566665554432 22233333 788999999999999999999999999999875 46789999
Q ss_pred CEEEEeCCCc--cccCccccCCCCccccccCCCCCCeEEEEEEeCCCcC
Q 005154 388 DIIALAGLKD--TITGETLCDADHPILLERMDFPDPVIKVAIEPKTKAD 434 (711)
Q Consensus 388 dIv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~~~pv~~~~iep~~~~d 434 (711)
+-+.+.=-++ +..||.|+..+.++. ..-.+.--++-+.=+|..+..
T Consensus 284 ~aVtl~L~deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 284 EAVTLVLADEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred ceEEEEEcceeecccCcEEEccCCCcc-hhhhcceeEEEecCCCCCCCc
Confidence 9999964333 688999998776553 222333445555555555554
No 63
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-26 Score=249.05 Aligned_cols=273 Identities=22% Similarity=0.280 Sum_probs=210.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCccee------------eee-cCCCccccchhhhhhcCceeeeeeEEEEe
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~------------~~~-~~g~~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
+++...+.+++||+|+|||||..+|+|..|.++.. |.- ....+++|....|++||+|+......|+-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 44567899999999999999999999999977541 111 23358999999999999999999999999
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCCeE-EEEeccCcCCcc-
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN- 157 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~- 157 (711)
+.+.++|+|+|||.||..+++.+...+|.++||||++.| ...||+++...++.+|+.-+ |++||||..+++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 999999999999999999999999999999999999943 46799999999999999865 569999999876
Q ss_pred --HHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 158 --FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 158 --~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
++++...+...|... +.|...
T Consensus 333 ~RF~eIk~~l~~fL~~~-------------------------~gf~es-------------------------------- 355 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKES-------------------------CGFKES-------------------------------- 355 (603)
T ss_pred HHHHHHHHHHHHHHHHh-------------------------cCcccC--------------------------------
Confidence 333333333333100 000000
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH---------------HHHHHHHHhCCCCCCCC
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDLP 300 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~---------------~Ll~~i~~~lP~p~~~~ 300 (711)
.-+|+| +|+++|.|+. .||+.|.. +-.|...
T Consensus 356 -----------------------------~v~FIP---iSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~- 401 (603)
T KOG0458|consen 356 -----------------------------SVKFIP---ISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERP- 401 (603)
T ss_pred -----------------------------CcceEe---cccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCc-
Confidence 012233 3555555532 36777766 4444331
Q ss_pred CCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceee
Q 005154 301 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 380 (711)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~ 380 (711)
.+.||++-|..++..+..|..++|||-||.+++||+|++.+......|++|..= -.+
T Consensus 402 -------------------~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~ 458 (603)
T KOG0458|consen 402 -------------------IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEP 458 (603)
T ss_pred -------------------ccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCc
Confidence 356999999999999999999999999999999999999998888888887542 467
Q ss_pred cCeeecCCEEEE--eCCC--ccccCccccC
Q 005154 381 VKVALAGDIIAL--AGLK--DTITGETLCD 406 (711)
Q Consensus 381 v~~a~aGdIv~i--~gl~--~~~~Gdtl~~ 406 (711)
...+.|||-|.+ .++. .+..|+++++
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeeec
Confidence 888999999998 4533 3788999984
No 64
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-26 Score=230.90 Aligned_cols=306 Identities=22% Similarity=0.344 Sum_probs=219.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------- 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~--------------- 86 (711)
+.-.||+++||+|||||||+.+|. | .++|.+..|.+|||||+..++....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als---G------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS---G------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred CcceEeeeeeecccchhhheehhh---c------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 447899999999999999999993 3 5678999999999999987765433
Q ss_pred ---c--------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-CChhHHHHHHHHHhcCCCeE-EEEeccCc
Q 005154 87 ---N--------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI-CFVNKMDR 153 (711)
Q Consensus 87 ---~--------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-~~~~t~~~~~~~~~~~ip~i-vviNK~D~ 153 (711)
. -+.+.|+|+|||+-....|..+....|+++|||+|++. .++||++|+-.+.-.+++-+ ++-||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 0 14689999999999999999999999999999999965 68999999999998998765 56799999
Q ss_pred CCccHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHH
Q 005154 154 LGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 233 (711)
Q Consensus 154 ~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l 233 (711)
...+ +.++..
T Consensus 153 V~~E--~AlE~y-------------------------------------------------------------------- 162 (415)
T COG5257 153 VSRE--RALENY-------------------------------------------------------------------- 162 (415)
T ss_pred ecHH--HHHHHH--------------------------------------------------------------------
Confidence 7643 111111
Q ss_pred hccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 005154 234 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 313 (711)
Q Consensus 234 ~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 313 (711)
++++++++..+.. ..|+++.||.++.+|+.|+++|.+++|.|..
T Consensus 163 -------------------~qIk~FvkGt~Ae--~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--------------- 206 (415)
T COG5257 163 -------------------EQIKEFVKGTVAE--NAPIIPISAQHKANIDALIEAIEKYIPTPER--------------- 206 (415)
T ss_pred -------------------HHHHHHhcccccC--CCceeeehhhhccCHHHHHHHHHHhCCCCcc---------------
Confidence 1222222221111 1488899999999999999999999999976
Q ss_pred cccccCCCCCeEEEEEEEeecC--------CCCeEEEEEEEeeEeCCCCEEEeCCC------Cce---eecceeEEeccC
Q 005154 314 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK------GKK---ERIGRLLEMHAN 376 (711)
Q Consensus 314 ~~~~~~~~~p~~~~V~k~~~~~--------~~g~l~~~RV~sG~l~~gd~v~~~~~------~~~---~~v~~i~~~~g~ 376 (711)
|.+.|..++|.+.+... -+|-+.-|-+..|.|+.||+|.+.+. ++. --.+.|..+++.
T Consensus 207 -----d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag 281 (415)
T COG5257 207 -----DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG 281 (415)
T ss_pred -----CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC
Confidence 35788899999987632 34568889999999999999986442 211 013455555554
Q ss_pred ceeecCeeecCCEEEE-eCCCc-cccCccccCC--CCccccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCce
Q 005154 377 SREDVKVALAGDIIAL-AGLKD-TITGETLCDA--DHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSF 452 (711)
Q Consensus 377 ~~~~v~~a~aGdIv~i-~gl~~-~~~Gdtl~~~--~~~~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl 452 (711)
. ..+++|.+|-.+++ ++|+- +-++|-|.+. +.+ -..|+....+.++. .-|.++.-.+-.+
T Consensus 282 ~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~p-----G~lPpv~~~~~ie~----------~LL~RvvG~~~e~ 345 (415)
T COG5257 282 G-EDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKP-----GTLPPVWTSIRIEY----------HLLERVVGTKEEL 345 (415)
T ss_pred C-eeeeeccCCceEEEecccCcchhhhhhhccccccCC-----CCCCCceEEEEEEe----------eehhhhhCccccc
Confidence 4 67999999999999 66765 3446655542 111 12233334445542 2344444555556
Q ss_pred EEEEcCCCCeEEEEecCh
Q 005154 453 HFSRDEEINQTVIEGMGE 470 (711)
Q Consensus 453 ~v~~~~~tge~il~g~Ge 470 (711)
+++.- .++|.++...|.
T Consensus 346 kvepi-k~~E~Lml~VGt 362 (415)
T COG5257 346 KVEPI-KTNEVLMLNVGT 362 (415)
T ss_pred ccccc-cCCCeEEEEeec
Confidence 66543 478877766554
No 65
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=7.4e-27 Score=230.27 Aligned_cols=129 Identities=30% Similarity=0.440 Sum_probs=114.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
..||+++||+|+|||||+++|++... ..+... .+...+|+.+.|++||+|+++....+.+++..++|+|||||.+|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH
Confidence 36999999999999999999987643 222221 23467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~ 155 (711)
..++.++++.+|++++|+|+.+|+..+++++++.+.+.++| +++|+||+|+..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999998 668899999863
No 66
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.94 E-value=1.7e-25 Score=252.58 Aligned_cols=287 Identities=23% Similarity=0.317 Sum_probs=185.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------------- 86 (711)
|.+.|+++||+|||||||+++|+.........+ |+|.+.....+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g------------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG------------------GITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC------------------ceecccCeeEeeecccccccccccccccc
Confidence 457899999999999999999974322111111 1222111111111
Q ss_pred --cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHH
Q 005154 87 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 164 (711)
Q Consensus 87 --~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~ 164 (711)
+...++|||||||.+|...+.++++.+|++++|+|+++|+..++.+++..+...++|+++++||+|+....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~------- 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW------- 137 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh-------
Confidence 11248999999999999999999999999999999999999999999999998999999999999986411
Q ss_pred HHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 005154 165 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 244 (711)
Q Consensus 165 l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~ 244 (711)
....+.. |-. +...........+.+....++..+.+
T Consensus 138 -~~~~~~~---------------------------f~e-------~sak~~~~v~~~~~~~~~~lv~~l~~--------- 173 (590)
T TIGR00491 138 -RSHEGRP---------------------------FME-------SFSKQEIQVQQNLDTKVYNLVIKLHE--------- 173 (590)
T ss_pred -hhccCch---------------------------HHH-------HHHhhhHHHHHHHHHHHHHHHHHHHh---------
Confidence 0000000 000 00000000001111111111111111
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHh----CCCCCCCCCCCCCCCCCcccccccccCC
Q 005154 245 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY----LPSPLDLPAMKGTDPENPEATLERAASD 320 (711)
Q Consensus 245 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~----lP~p~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
..+..+.+.. +. -.+..+|++++||++|.|+++|++++... ++... ..++
T Consensus 174 ---~G~~~e~~~~-i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l-------------------~~~~ 227 (590)
T TIGR00491 174 ---EGFEAERFDR-VT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQL-------------------KLEE 227 (590)
T ss_pred ---cCccHHhhhh-hh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhh-------------------ccCC
Confidence 1111111111 11 12344789999999999999999988653 22221 1235
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCc--eeecceeEEecc--------CceeecCeee--cCC
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVAL--AGD 388 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~--~~~v~~i~~~~g--------~~~~~v~~a~--aGd 388 (711)
++|+.+.|..++.+++.|+++.++|.+|+|++||.|...+.+. ..+|+.++...+ .....++++. +|-
T Consensus 228 ~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~ 307 (590)
T TIGR00491 228 EGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGV 307 (590)
T ss_pred CCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCce
Confidence 7899999999999999999999999999999999999887764 467888876643 1234566644 445
Q ss_pred EEEEeCCCccccCccc
Q 005154 389 IIALAGLKDTITGETL 404 (711)
Q Consensus 389 Iv~i~gl~~~~~Gdtl 404 (711)
-+.+.|++.+..|+.+
T Consensus 308 ~v~~~~l~~~~aG~~~ 323 (590)
T TIGR00491 308 KIAAPGLDDVMAGSPI 323 (590)
T ss_pred eEEecCCCCCCCCCEE
Confidence 5556788777777665
No 67
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-24 Score=218.25 Aligned_cols=247 Identities=22% Similarity=0.284 Sum_probs=199.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---------cCeeEEEE
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINII 94 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------~~~~i~li 94 (711)
..|++++||+|+|||||..+|... + .+...|..+...+||+|.+.....+.. ..-.++|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-------~----STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlv 75 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-------G----STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLV 75 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-------c----cchhhccCCcccccceeEeecceeeecccccccCccccceeEEE
Confidence 489999999999999999999521 1 145678889999999999988776654 23467999
Q ss_pred eCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccH-HHHHHHHHHHhCCcc
Q 005154 95 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-FRTRDMIVTNLGAKP 173 (711)
Q Consensus 95 DtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~-~~~~~~l~~~l~~~~ 173 (711)
|||||...+..++.+....|..++|||+..|.+.||.+.+-.......+.++|+||+|....+. ...++....
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------ 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------ 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH------
Confidence 9999999999999999999999999999999999999998888888888999999999765431 111111111
Q ss_pred eEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHH
Q 005154 174 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 253 (711)
Q Consensus 174 ~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~ 253 (711)
T Consensus 150 -------------------------------------------------------------------------------- 149 (522)
T KOG0461|consen 150 -------------------------------------------------------------------------------- 149 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhcCcceeeeeccccCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEE
Q 005154 254 TIKKLIRKGTIAGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 329 (711)
Q Consensus 254 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~----~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 329 (711)
.+++.+..... +...|++..||+.| .++.+|.+++.+.+--|.. |+.+||.++|.
T Consensus 150 k~~KtLe~t~f-~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vD 208 (522)
T KOG0461|consen 150 KVRKTLESTGF-DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVD 208 (522)
T ss_pred HHHHHHHhcCc-CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEee
Confidence 11122221111 22358999999999 8999999999988777754 36899999999
Q ss_pred EEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE
Q 005154 330 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 392 (711)
Q Consensus 330 k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i 392 (711)
..+..++.|++..|.|.+|.++.|+.|..+.-+...||+.+.+++ .+|.+|.+||.+++
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHh----hhhhhhhcccceee
Confidence 999999999999999999999999999988777777888877665 67999999999988
No 68
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=3.8e-24 Score=208.88 Aligned_cols=130 Identities=40% Similarity=0.570 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-----cCeeEEEEeCCCC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 99 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-----~~~~i~liDtPG~ 99 (711)
|||+++|++|+|||||+++|+...+.+...+. ...+.|+.+.|+.+|+|+......+.| +++.++|||||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM---KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC---ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 79999999999999999999987775543221 135778889999999999988777755 4678999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999888888888877777899999999999986543
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=1.4e-24 Score=219.05 Aligned_cols=130 Identities=32% Similarity=0.416 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceee--ee-----cCCC------ccccchhhhhhcCceeeeeeEEEEecCeeEE
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EV-----HEGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 92 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~--~~-----~~g~------~~~d~~~~e~~~giti~~~~~~~~~~~~~i~ 92 (711)
||+++||+|||||||+++|++.+|.+.+.+ .+ ..|. +++|+.+.|++||+|+++....+.++++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999877644 21 1333 3889999999999999999999999999999
Q ss_pred EEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC-------CCChhHHHHHHHHHhcCC-CeEEEEeccCcCC
Q 005154 93 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYGV-PRICFVNKMDRLG 155 (711)
Q Consensus 93 liDtPG~~df~~~~~~~l~~~D~~llvvda~~-------g~~~~t~~~~~~~~~~~i-p~ivviNK~D~~~ 155 (711)
+||||||.+|..++..+++.+|++|+|||+++ +...++..++..+...++ |+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 567788888888877774 6778999999974
No 70
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.92 E-value=1.2e-24 Score=198.04 Aligned_cols=119 Identities=50% Similarity=0.864 Sum_probs=112.7
Q ss_pred ceeeEEeeecccce-eEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccC
Q 005154 493 PQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAG 571 (711)
Q Consensus 493 p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g 571 (711)
|+|+|||||+++.+ ....++++.++.++|+.+.|+++|.+ +.++.|++++.++.+|++|+++|++||++++++|||+|
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~-~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g 79 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE-GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCG 79 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS-TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTS
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc-cCCceeeeccccccccHHHHHHHhhhhhheecccccCC
Confidence 89999999999999 88999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 005154 572 FPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 612 (711)
Q Consensus 572 ~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~ 612 (711)
|||+||+|+|.++.+|+.+|++.+|+.|+++||++|+++|+
T Consensus 80 ~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 80 YPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 71
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.92 E-value=2.6e-24 Score=215.42 Aligned_cols=131 Identities=27% Similarity=0.331 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeec-----------CCCccccchhhhhhcCceeeeeeEEEEecCeeEE
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 92 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~-----------~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~ 92 (711)
+|+|+||+|||||||+++|++.+|.+.. .+.+. .+++.+|+.+.|++||+|+++....+.+++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999999998762 22222 4567899999999999999999999999999999
Q ss_pred EEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCc
Q 005154 93 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 156 (711)
Q Consensus 93 liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~ 156 (711)
|||||||.+|...+..+++.+|++|+|+|++++...+++.++..+...++| +|+|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999998888888888876 5668999998653
No 72
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1.4e-23 Score=207.92 Aligned_cols=143 Identities=41% Similarity=0.576 Sum_probs=121.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
++|||+++|++|+|||||+++|+...+.......+ +.+.+|+.+.|..+|+|+......+.+++..+++||||||.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 37999999999999999999999766655443222 1366888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHH
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVT 167 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~ 167 (711)
...+..+++.+|++++|+|++++...++..++..+...++|+++|+||+|+...+....++++.+
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999998888888888888888999999999999976555444444443
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=3.5e-23 Score=208.11 Aligned_cols=130 Identities=38% Similarity=0.505 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecC-CCccccchhhhhhcCceeeeeeEEEEec-----CeeEEEEeCCC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 98 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~-g~~~~d~~~~e~~~giti~~~~~~~~~~-----~~~i~liDtPG 98 (711)
|||+++||+|+|||||+++|+..++.....+.... .+.++|..+.|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 79999999999999999999988887654433322 3467899999999999999998888764 37899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
|.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999998888888888888889999999999986
No 74
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.90 E-value=1.9e-23 Score=187.51 Aligned_cols=115 Identities=28% Similarity=0.500 Sum_probs=106.3
Q ss_pred eeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCe
Q 005154 495 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPV 574 (711)
Q Consensus 495 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 574 (711)
|+|||||+++++. ..+ ++.++++|||+++++++|++++.++.|.+++.++.+|++|+++|++|+++++.+||| ||||
T Consensus 1 VaYRETI~~~~~~-~~~-~~~~~~~~~a~v~l~veP~~~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv 77 (115)
T cd01684 1 VIYKERPLGTGEG-VEH-IEVPPNPFWATVGLRVEPLPRGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEV 77 (115)
T ss_pred CceEEEeCCcEEE-EEE-EccCCCcEEEEEEEEEEECCCCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCE
Confidence 7899999998763 434 445577789999999999998889999999999999999999999999999999999 9999
Q ss_pred eEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 005154 575 VDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 612 (711)
Q Consensus 575 ~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~ 612 (711)
+||+|+|.++.+|+++|++++|+.|++.|+++|+.+|+
T Consensus 78 ~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 78 TDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred eeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 75
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.90 E-value=4.3e-22 Score=234.59 Aligned_cols=322 Identities=20% Similarity=0.231 Sum_probs=208.3
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC------------------e
Q 005154 28 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------H 89 (711)
Q Consensus 28 ~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~------------------~ 89 (711)
+|+.| ||||+++|...+- .....+|||.+.....+.++. .
T Consensus 469 ~~~~~----KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p 526 (1049)
T PRK14845 469 GILVH----NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIP 526 (1049)
T ss_pred eeecc----cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcC
Confidence 45555 9999999952111 223457899998888777642 1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC-ccHHHHHHHHHHH
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTN 168 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~-~~~~~~~~~l~~~ 168 (711)
.++|||||||.+|.....++++.+|++++|+|+++|+..|+.+++..+...++|+++|+||+|+.. .....
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~-------- 598 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE-------- 598 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc--------
Confidence 289999999999998888889999999999999999999999999999999999999999999853 21000
Q ss_pred hCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCC
Q 005154 169 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGN 248 (711)
Q Consensus 169 l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~ 248 (711)
..++-..+..+.+...+++-+.+.+.-.+| ...
T Consensus 599 ------------------------------------------~~~~~~~~~~q~~~~~~el~~~l~~v~~~L-----~~~ 631 (1049)
T PRK14845 599 ------------------------------------------DEPFLLNFNEQDQHALTELEIKLYELIGKL-----YEL 631 (1049)
T ss_pred ------------------------------------------chhhhhhhhhhHHHHHHHHHHHHHHHhhHH-----Hhc
Confidence 000000111111111111111110000000 000
Q ss_pred CCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 005154 249 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 328 (711)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 328 (711)
.+..+.+ ..+.. .+..+|++++||++|.|++.|+++|....+.-.+. ....++++|+.++|
T Consensus 632 G~~~e~~-~~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~---------------~L~~~~~~~~~g~V 692 (1049)
T PRK14845 632 GFDADRF-DRVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEE---------------RLKLNVEGYAKGTI 692 (1049)
T ss_pred Ccchhhh-hhhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhh---------------hhccCCCCceEEEE
Confidence 1111111 01111 14457999999999999999999887543321110 01224578999999
Q ss_pred EEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCc--eeecceeEEec--------cCceeecCeeecCCEEEE--eCCC
Q 005154 329 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLK 396 (711)
Q Consensus 329 ~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~--~~~v~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~ 396 (711)
..++.+++.|+++.+.|++|+|++||.|...+.++ ..+|+.++.+. ++...+++++.|+.-+-| .|++
T Consensus 693 lEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~ 772 (1049)
T PRK14845 693 LEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLE 772 (1049)
T ss_pred EEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcc
Confidence 99999999999999999999999999999987654 46788776431 223567888888777766 5888
Q ss_pred ccccCccccCCCCcc-----------ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHH
Q 005154 397 DTITGETLCDADHPI-----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 445 (711)
Q Consensus 397 ~~~~Gdtl~~~~~~~-----------~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l 445 (711)
.+..|+.+.-..+.. .+....+....+.+.|.+.+....+.|.++|+++
T Consensus 773 ~~~aG~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 773 EVLAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred ccCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 888888775332110 0111112234456666666666666666666654
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=4.5e-23 Score=205.61 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 87 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------------- 87 (711)
+||+++||.|||||||+++|. ....|+.+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 589999999999999999994 133688889999999999988887764
Q ss_pred ----------C------eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-CChhHHHHHHHHHhcCC-CeEEEEe
Q 005154 88 ----------K------HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGV-PRICFVN 149 (711)
Q Consensus 88 ----------~------~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-~~~~t~~~~~~~~~~~i-p~ivviN 149 (711)
+ +.++|||||||.+|...+..+++.+|++++|+|+.++ ...++...+..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 67788888888877776 5788999
Q ss_pred ccCcCC
Q 005154 150 KMDRLG 155 (711)
Q Consensus 150 K~D~~~ 155 (711)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999865
No 77
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=4.2e-22 Score=196.99 Aligned_cols=119 Identities=26% Similarity=0.444 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--------------CeeE
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------KHRI 91 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------------~~~i 91 (711)
||+++||+|+|||||+++|+... +...+|....|+++|+|+......+.+. ++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 79999999999999999997321 2355788889999999999988888776 7899
Q ss_pred EEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 92 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 92 ~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
++||||||.+|...+..++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999999998999999999999999999988888777777777899999999999874
No 78
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.88 E-value=2.7e-22 Score=181.05 Aligned_cols=116 Identities=58% Similarity=1.008 Sum_probs=112.4
Q ss_pred EEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeE
Q 005154 497 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 576 (711)
Q Consensus 497 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 576 (711)
|||||.++++...++++++|++++|++++++++|++++.++.|.+++.++.+|++|+++|++||++++++|||+|+||+|
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~ 80 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVD 80 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcccc
Confidence 89999999887799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 005154 577 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 612 (711)
Q Consensus 577 v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~ 612 (711)
|+|+|.++.+|+.+|++++|+.|+++|+++|+.+|+
T Consensus 81 v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 81 VKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred EEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 79
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.1e-22 Score=208.46 Aligned_cols=291 Identities=20% Similarity=0.233 Sum_probs=212.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeee------ecC-------CCccccchhhhhhcCceeeeeeEEEEe
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE------VHE-------GTATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~------~~~-------g~~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
+++...|+.++||+++||||+-+.|++.+|.++...- ... -++++|++..|+++|-|+......|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4567899999999999999999999888886654210 000 137899999999999999999999999
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCeE-EEEeccCcCCccH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPRI-CFVNKMDRLGANF 158 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-------~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~ 158 (711)
....++++|+|||..|..+++.++..+|.+++|+.+..|- ..||+++..+++..++..+ +++||||-+..+.
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997442 3599999999999998875 5699999876541
Q ss_pred H-HHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccC
Q 005154 159 F-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 237 (711)
Q Consensus 159 ~-~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~ 237 (711)
. +..+++.
T Consensus 235 s~eRy~E~~----------------------------------------------------------------------- 243 (501)
T KOG0459|consen 235 SNERYEECK----------------------------------------------------------------------- 243 (501)
T ss_pred chhhHHHHH-----------------------------------------------------------------------
Confidence 0 0011111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhhhcC-cceeeeeccccCCCChHHHHHHH--HHhCCCCCCCCCCCCCCCCCccccc
Q 005154 238 DEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAV--VDYLPSPLDLPAMKGTDPENPEATL 314 (711)
Q Consensus 238 d~l~e~~l~~~~~~~~~~~~~l~~~~~~~-~~~Pv~~~Sa~~~~Gi~~Ll~~i--~~~lP~p~~~~~~~~~~~~~~~~~~ 314 (711)
+++...|+....+. .-.-.+.+|.++|.++.+..+.. ....|++... .++ ..
T Consensus 244 ---------------~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~-------ld~---l~ 298 (501)
T KOG0459|consen 244 ---------------EKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEY-------LDE---LP 298 (501)
T ss_pred ---------------HHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCcccee-------hhc---cC
Confidence 12222233111111 11113456888888887666411 1222333321 100 11
Q ss_pred ccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--
Q 005154 315 ERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-- 392 (711)
Q Consensus 315 ~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i-- 392 (711)
..+-+.++|+.+.|..-+. ..|++..|+|-||++++||.+.+.++++...|.+||. +-.+++++.+|+.+-|
T Consensus 299 ~~~R~~~GP~~~pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk~rl 372 (501)
T KOG0459|consen 299 HLERILNGPIRCPVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKLRL 372 (501)
T ss_pred cccccCCCCEEeehhhhcc--ccceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceEEEe
Confidence 1223568999998866553 3479999999999999999999999988888888874 3578999999999988
Q ss_pred eCCC--ccccCccccCCCCccc
Q 005154 393 AGLK--DTITGETLCDADHPIL 412 (711)
Q Consensus 393 ~gl~--~~~~Gdtl~~~~~~~~ 412 (711)
.|++ ++..|-+||++.++..
T Consensus 373 kgieeedi~~GfiL~~~~n~~~ 394 (501)
T KOG0459|consen 373 KGIEEEDISPGFILCSPNNPCK 394 (501)
T ss_pred cccchhhccCceEEecCCCccc
Confidence 6765 3889999999887754
No 80
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=8.5e-22 Score=198.51 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEE----------------------
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT---------------------- 83 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~---------------------- 83 (711)
+|+++|+.++|||||+++|.. +.... +. ......+|.+++|.++|+|+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 478999999999999999973 22221 10 11125678899999999997543322
Q ss_pred --EEecCeeEEEEeCCCCCchHHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc-cH
Q 005154 84 --TYWNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 158 (711)
Q Consensus 84 --~~~~~~~i~liDtPG~~df~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~-~~ 158 (711)
++..++.++|+|||||.+|..++.+++. .+|++++|+|+.+|...++++++..+...++|+++|+||+|+... ++
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 2335688999999999999999999986 789999999999999999999999999999999999999998654 36
Q ss_pred HHHHHHHHHHhC
Q 005154 159 FRTRDMIVTNLG 170 (711)
Q Consensus 159 ~~~~~~l~~~l~ 170 (711)
.+.++++.+.|.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 677777777664
No 81
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.87 E-value=8.4e-22 Score=178.19 Aligned_cols=116 Identities=35% Similarity=0.617 Sum_probs=112.0
Q ss_pred EEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeE
Q 005154 497 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 576 (711)
Q Consensus 497 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 576 (711)
|||||.++++...++.++++++++|+++.++++|++++.++.|.+++.++.+|++|+++|++||++++++|||||+||+|
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~ 80 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTD 80 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceee
Confidence 99999999888889999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 005154 577 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 612 (711)
Q Consensus 577 v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~ 612 (711)
++|+|.++.+|+.++++++|+.|+++||++|+++|+
T Consensus 81 v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 81 VRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred EEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 82
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=3e-22 Score=167.44 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=75.5
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCe-EEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||+|+|+||++++|+|+++|++|||+|++++..+++. +.|+|++|++++|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999988876554 8999999999999999999999999999999999999986
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.4e-20 Score=184.77 Aligned_cols=142 Identities=45% Similarity=0.680 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
||+++|.+|+|||||+++|+............. ....++...+..+|+|+......+.+.+..++||||||+.+|...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee--cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999986655433322211 255777888999999999888888889999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC-ccHHHHHHHHHHHh
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNL 169 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~-~~~~~~~~~l~~~l 169 (711)
+..+++.+|++++|+|+.++...+.+..+..+...++|+++|+||+|+.. .+.....+++++.+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888999999999999976 44445555555444
No 84
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=8.7e-22 Score=168.63 Aligned_cols=89 Identities=45% Similarity=0.748 Sum_probs=83.4
Q ss_pred eeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCcccc
Q 005154 614 KMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDV 693 (711)
Q Consensus 614 ~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~ 693 (711)
+||||||+++|.+|++++|+|+++|++|||+|++++..+++.+.|+|.+|+++++||.++||++|+|+|.|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999998548899999999999999999999999999999999999999
Q ss_pred CCchHHHHH
Q 005154 694 VPQHIQNQL 702 (711)
Q Consensus 694 v~~~~~~~~ 702 (711)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998874
No 85
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.85 E-value=4.9e-21 Score=194.02 Aligned_cols=283 Identities=20% Similarity=0.266 Sum_probs=207.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC----ccccchhhhhhcCceeeeeeEE-----------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATT----------------- 83 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~----~~~d~~~~e~~~giti~~~~~~----------------- 83 (711)
..|+++|.+|+|||||+..|.+ +..++|. ..+-.++.|.+.|-|.....-.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 5799999999999999999862 2223332 2334455666666664433322
Q ss_pred --EEe------cCeeEEEEeCCCCCchHHHHHHHHHhc--CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 84 --TYW------NKHRINIIDTPGHVDFTLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 84 --~~~------~~~~i~liDtPG~~df~~~~~~~l~~~--D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
++| .-..++|||.+||+.|...+..++..- |..+++|.++.|+-..|.+++.++....+|+++|++|+|+
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 333 124699999999999999999988754 9999999999999999999999999999999999999999
Q ss_pred CCcc-HHHHHHHHHHHhC---CcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHH
Q 005154 154 LGAN-FFRTRDMIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 229 (711)
Q Consensus 154 ~~~~-~~~~~~~l~~~l~---~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l 229 (711)
+.++ ++++++-+.+.+. ++.+|+.+- .-+ |++ -.+..|
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVr--s~D------DVv-~~A~NF----------------------------- 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVR--SMD------DVV-HAAVNF----------------------------- 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEe--ccc------ceE-EeeccC-----------------------------
Confidence 9988 5667777766653 443333221 000 000 001111
Q ss_pred HHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 005154 230 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 309 (711)
Q Consensus 230 ~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~ 309 (711)
...+.+|+|.+|..+|.++. ||.+..+.++.-...
T Consensus 328 ----------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~~---------- 362 (641)
T KOG0463|consen 328 ----------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQL---------- 362 (641)
T ss_pred ----------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCccccc----------
Confidence 12345899999999999985 888888888654331
Q ss_pred cccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCc----eeecceeEEeccCceeecCeee
Q 005154 310 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVAL 385 (711)
Q Consensus 310 ~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~----~~~v~~i~~~~g~~~~~v~~a~ 385 (711)
..+.|.-.+|.++++.|++|+++.|..++|+++.+|.+...++.. ...|++|. +++.+|..+.
T Consensus 363 ---------~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~Vr 429 (641)
T KOG0463|consen 363 ---------NENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVR 429 (641)
T ss_pred ---------ccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEe
Confidence 136788889999999999999999999999999999999776432 23455543 5678999999
Q ss_pred cCCEEEE--eCCC--ccccCccccCCCCcc
Q 005154 386 AGDIIAL--AGLK--DTITGETLCDADHPI 411 (711)
Q Consensus 386 aGdIv~i--~gl~--~~~~Gdtl~~~~~~~ 411 (711)
+|+-... .+++ ++++|.++.++...+
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~lkP 459 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPKLKP 459 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCCCCc
Confidence 9998765 4443 478999998876443
No 86
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.85 E-value=3.8e-21 Score=174.75 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=104.8
Q ss_pred eeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCC----CcEEEecccCCcCccccHHHHHHHHHHHHHcCccc
Q 005154 495 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGS----GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLA 570 (711)
Q Consensus 495 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~----~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~ 570 (711)
|+|||||.++++..++|++++||++||++|+++++|++++. ++.|.+.. ++.+|++|+++|++|++.++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 78999999998877899999999999999999999998765 46666555 78899999999999999999999999
Q ss_pred CCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 005154 571 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 612 (711)
Q Consensus 571 g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~ 612 (711)
|+||+||+|+|.++.+|++++++..+ .|++.|+++|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999887776655 889999999999874
No 87
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=1.8e-21 Score=165.32 Aligned_cols=83 Identities=54% Similarity=0.947 Sum_probs=79.0
Q ss_pred eeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccC
Q 005154 615 MLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 615 llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
||||||+++|.||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||+++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 68999999999999999999999999999999999765 67999999999999999999999999999999999999999
Q ss_pred CchH
Q 005154 695 PQHI 698 (711)
Q Consensus 695 ~~~~ 698 (711)
|+++
T Consensus 80 ~~~~ 83 (85)
T smart00838 80 PKSI 83 (85)
T ss_pred Chhh
Confidence 9654
No 88
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.84 E-value=8e-21 Score=183.01 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=101.5
Q ss_pred CceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccC--------------------------------------
Q 005154 492 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA-------------------------------------- 533 (711)
Q Consensus 492 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-------------------------------------- 533 (711)
+|.|+|||||.+.+...+..+.. .+..++.+..+|++.
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~----nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETP----NKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeECC----CcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 59999999999877543322211 112356666666632
Q ss_pred -------CCCcEEEecccCCc----CccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccC--CCCCHHHHHHHH
Q 005154 534 -------GSGYEFKSEIKGGA----VPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAA 600 (711)
Q Consensus 534 -------~~~~~~~~~~~~~~----~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~--~~s~~~~~~~a~ 600 (711)
...|+|+|.+.+.. +.++++++|++||+||+++|||||+||+||+|+|.++.+|+ .+++++.|.+|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 11377777766433 45678999999999999999999999999999999999998 778899999999
Q ss_pred HHHHHHHHHHcCCeeeeceeEE
Q 005154 601 RGAFREGMRKAGPKMLEPIMKV 622 (711)
Q Consensus 601 ~~~~~~a~~~a~~~llEPi~~~ 622 (711)
|+||++|+++|+|+||||||.+
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999975
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.4e-19 Score=173.55 Aligned_cols=117 Identities=26% Similarity=0.384 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-CeeEEEEeCCCCCchH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~i~liDtPG~~df~ 103 (711)
.+|+++|++|+|||||+++|+ +. ..+..+.+..+++|+......+.+. +..+++|||||+.+|.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~---~~------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~ 65 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALT---GI------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI 65 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHh---Cc------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH
Confidence 379999999999999999995 21 0123344556788888877777776 8899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC-CeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i-p~ivviNK~D~~~~ 156 (711)
..+..+++.+|++++|+|++++...++...+..+...+. |+++|+||+|+...
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 888899999999999999999888888777776666676 89999999998653
No 90
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-19 Score=184.25 Aligned_cols=285 Identities=19% Similarity=0.251 Sum_probs=205.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC----ccccchhhhhhcCceeeeeeEEEEe--------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYW-------------- 86 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~----~~~d~~~~e~~~giti~~~~~~~~~-------------- 86 (711)
.+++++|..|+|||||+..|. .+..++|. ..+-.++.|.+.|-|...+.-.+.+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 578999999999999999996 23333332 2344567888888776655444433
Q ss_pred -------cCeeEEEEeCCCCCchHHHHHHHHHhc--CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 87 -------NKHRINIIDTPGHVDFTLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 87 -------~~~~i~liDtPG~~df~~~~~~~l~~~--D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.+..++|||.+||..|...++.++..- |++++||.|..|+...|++++..+...++|++++++|||+....
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 246799999999999999999998865 99999999999999999999999999999999999999998753
Q ss_pred -HHHHHHHHHHHhC---CcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHH
Q 005154 158 -FFRTRDMIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 233 (711)
Q Consensus 158 -~~~~~~~l~~~l~---~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l 233 (711)
++++++++...+. +...|..+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~V------------------------------------------------------- 344 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRV------------------------------------------------------- 344 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEe-------------------------------------------------------
Confidence 6778888776653 32222111
Q ss_pred hccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 005154 234 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 313 (711)
Q Consensus 234 ~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 313 (711)
-++++...+..+ ...++++|+|+.|+.+|.|++ |+..+...+|+-..+.. +
T Consensus 345 ----------------t~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e-~---------- 395 (591)
T KOG1143|consen 345 ----------------TTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEE-R---------- 395 (591)
T ss_pred ----------------echHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHH-H----------
Confidence 012222233332 456788999999999999998 45555555544332110 0
Q ss_pred cccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC----ceeecceeEEeccCceeecCeeecCCE
Q 005154 314 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVALAGDI 389 (711)
Q Consensus 314 ~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~----~~~~v~~i~~~~g~~~~~v~~a~aGdI 389 (711)
.--...|.-.+|..++..|++|.++-|-+.+|.++.|+.+.+.+.. .+.+|..|.+ .+.++..+.||+-
T Consensus 396 ---~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R----nr~acrvvraGqa 468 (591)
T KOG1143|consen 396 ---IQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR----NRQACRVVRAGQA 468 (591)
T ss_pred ---HHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec----cccceeeecCccc
Confidence 0002456677899999999999999999999999999999987643 2355666653 3466778999999
Q ss_pred EEEe-CCCc---cccCccccCCC
Q 005154 390 IALA-GLKD---TITGETLCDAD 408 (711)
Q Consensus 390 v~i~-gl~~---~~~Gdtl~~~~ 408 (711)
..+. +..+ ++.|.++.+..
T Consensus 469 Aslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 469 ASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeeccCCCccchhcceEEeecC
Confidence 8884 2111 46777766543
No 91
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.82 E-value=2.3e-20 Score=155.68 Aligned_cols=78 Identities=44% Similarity=0.739 Sum_probs=75.3
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|++++|||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999766 679999999999999999999999999999999999999986
No 92
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.82 E-value=2.9e-20 Score=153.04 Aligned_cols=75 Identities=53% Similarity=0.923 Sum_probs=70.6
Q ss_pred CCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeC
Q 005154 418 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 492 (711)
Q Consensus 418 ~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~ 492 (711)
+|+|+++++|+|.++.|..+|.+||++|+++||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999874
No 93
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.2e-19 Score=195.33 Aligned_cols=253 Identities=25% Similarity=0.243 Sum_probs=163.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------------- 86 (711)
+.+.+||+||+|+|||-|++.|...+-+-.. ..|||.+.....|..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege------------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE------------------AGGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc------------------ccceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 4577899999999999999999522111111 234454444444332
Q ss_pred --cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHH
Q 005154 87 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 164 (711)
Q Consensus 87 --~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~ 164 (711)
+---+.+||||||..|.....++...||.+|+|||..+|+.+||.+-+++++..+.|+||.+||+||.-
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY--------- 606 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY--------- 606 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc---------
Confidence 223588999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceee-eecccHhHHHH----HHHHHHHHHHHHhccCHH
Q 005154 165 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFA-YEDIPANLQKM----AQEYRSQMIETIVELDDE 239 (711)
Q Consensus 165 l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~----~~~~r~~l~e~l~~~~d~ 239 (711)
||... ..++-..+..+ ..++...+-..+. +
T Consensus 607 -----------------------------------------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~----e 641 (1064)
T KOG1144|consen 607 -----------------------------------------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIV----E 641 (1064)
T ss_pred -----------------------------------------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHH----H
Confidence 22211 11111111111 1112222111111 1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccC
Q 005154 240 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 319 (711)
Q Consensus 240 l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 319 (711)
+.|+-|+- ++. -+---.+.++-++++||.+|.||..|+-+|+++.-.-... + ..
T Consensus 642 faEQgLN~------~Ly---ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~-k----------------l~ 695 (1064)
T KOG1144|consen 642 FAEQGLNA------ELY---YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE-K----------------LA 695 (1064)
T ss_pred HHHcccch------hhe---eecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH-H----------------Hh
Confidence 11111110 000 0001135667789999999999999999998764221110 0 00
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCce--eecceeEEe
Q 005154 320 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK--ERIGRLLEM 373 (711)
Q Consensus 320 ~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~--~~v~~i~~~ 373 (711)
....+.+.|..+-..++.|+-.-+-+..|.|+.||.|.+.+.+.+ .+|+.|+.+
T Consensus 696 y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP 751 (1064)
T KOG1144|consen 696 YVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTP 751 (1064)
T ss_pred hhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCC
Confidence 123455677777777888998888889999999999987665433 334444433
No 94
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.81 E-value=4.4e-20 Score=154.01 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=75.1
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999998766 679999999999999999999999999999999999999974
No 95
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=5.2e-20 Score=153.75 Aligned_cols=78 Identities=58% Similarity=0.941 Sum_probs=75.2
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||+++|.||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG-GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC-CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999865 678999999999999999999999999999999999999986
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=184.07 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch--
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df-- 102 (711)
+.|+|+|.||+|||||+|+|+ |......+. ..|+|.+.......|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~r~AIV~D--------------~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GRRIAIVSD--------------TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCeeeEeec--------------CCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 689999999999999999995 443333332 2477999999999999999999999998842
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 -------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..++..++..||++|||||+..|+.++.+.+.+.+++.++|+++|+||+|...
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 34577899999999999999999999999999999988899999999999763
No 97
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.80 E-value=1.3e-19 Score=151.41 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=74.7
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
||||+++|.||++++|+|+++|++|||+|.+++..+++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||+++
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999866467999999999999999999999999999999999999986
No 98
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.80 E-value=8e-20 Score=153.37 Aligned_cols=79 Identities=37% Similarity=0.587 Sum_probs=74.9
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCC-CeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g-~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||+++|.||++++|+|+++|++|||.|.+++..++ +...|+|.+|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999999999999999987643 348999999999999999999999999999999999999986
No 99
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.79 E-value=5.7e-19 Score=171.46 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=78.6
Q ss_pred CcEEEecccCCcC----ccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCC--CCCHHHHHHHHHHHHHHHHH
Q 005154 536 GYEFKSEIKGGAV----PKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV--DSSVLAFQLAARGAFREGMR 609 (711)
Q Consensus 536 ~~~~~~~~~~~~~----~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~--~s~~~~~~~a~~~~~~~a~~ 609 (711)
.|+|.|.+.+... +++|+++|++||++|+++|||||+||+||+|+|.++.+|+. ++.++.+.+|+++||++|++
T Consensus 86 pNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~~~a~~ 165 (177)
T cd01681 86 PNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRACYAAFL 165 (177)
T ss_pred ceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHHHHHHh
Confidence 4777777766555 78999999999999999999999999999999999999986 77889999999999999999
Q ss_pred HcCCeeeeceeE
Q 005154 610 KAGPKMLEPIMK 621 (711)
Q Consensus 610 ~a~~~llEPi~~ 621 (711)
+|+|+||||||.
T Consensus 166 ~a~p~LlEPi~~ 177 (177)
T cd01681 166 LASPRLMEPMYL 177 (177)
T ss_pred hCCCEEEccccC
Confidence 999999999984
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=5.5e-18 Score=163.23 Aligned_cols=115 Identities=32% Similarity=0.362 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---CeeEEEEeCCCCCc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVD 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~i~liDtPG~~d 101 (711)
++|+++|++|+|||||+++|+..... . ....++|.......+.+. +..+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--A----------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc--c----------------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 46999999999999999999732111 0 012244555444455553 67999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
|...+..+++.+|++++|+|++++...++...+..+...++|+++|+||+|+...+
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 98888889999999999999999888888888888888999999999999987543
No 101
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=4.3e-18 Score=171.50 Aligned_cols=117 Identities=24% Similarity=0.313 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc--
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d-- 101 (711)
.--|||+|.||+|||||+|+|+ |+-....+..++| |......-+..++.++.|+||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~---G~KisIvS~k~QT--------------TR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV---GQKISIVSPKPQT--------------TRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh---cCceEeecCCcch--------------hhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4569999999999999999997 4433333333333 33333444455789999999999553
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
....+..++..+|++++|+|+.++.....+.+++.++..+.|+++++||+|+...+
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK 130 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH
Confidence 34556778889999999999999999999999999988788999999999987654
No 102
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=2.2e-18 Score=200.98 Aligned_cols=240 Identities=19% Similarity=0.181 Sum_probs=170.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+|+|+ |.....++. .|.|+......+.++++.+++|||||+.+|.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~~vgn~---------------pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQRVGNW---------------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCCccCCC---------------CCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 4689999999999999999995 433222221 4678888888888999999999999998874
Q ss_pred H--------HH--HHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC-ccHHHHHHHHHHHhC
Q 005154 104 L--------EV--ERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 170 (711)
Q Consensus 104 ~--------~~--~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~-~~~~~~~~~l~~~l~ 170 (711)
. +. ...+ ..+|++++|+|+++... ...++.++.+.++|+++|+||+|+.. .......+++.+.++
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 3 11 1222 26899999999987533 34566788889999999999999864 344556788889999
Q ss_pred CcceEEEeccCCC-CCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhcc-CHHHHHHHhcCC
Q 005154 171 AKPLVVQLPVGAE-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGN 248 (711)
Q Consensus 171 ~~~~~~~~p~~~~-~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~-~d~l~e~~l~~~ 248 (711)
.+.+++..+.+.+ +.+.+.++....+ + .....+++++..+..++.++.+.+.+++. ++.++.||++++
T Consensus 143 ~pVvpiSA~~g~GIdeL~~~I~~~~~~---------~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 143 CPVIPLVSTRGRGIEALKLAIDRHQAN---------E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhhhc---------c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 9888877776655 3333333221100 0 01124566666667777777777776655 788999999987
Q ss_pred CCCHH------HHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhC
Q 005154 249 EPDEE------TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 293 (711)
Q Consensus 249 ~~~~~------~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~l 293 (711)
..+.+ +..+.+++........|..++++.+..+++.+++.++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55444 3344444444444456888899999999999999988643
No 103
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.78 E-value=3.6e-19 Score=149.11 Aligned_cols=79 Identities=51% Similarity=0.868 Sum_probs=75.4
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 695 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 695 (711)
||||.++|.||++++|+|+++|++|||+|.+++..+.+.+.|+|.+|+++++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999997663579999999999999999999999999999999999999985
No 104
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=5e-19 Score=148.08 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=74.1
Q ss_pred eceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccC
Q 005154 617 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 617 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
|||++++|.||++++|+|+++|++|||+|.+++..+++...|+|.+|++++ +||.++||++|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999766347999999999999 699999999999999999999999985
No 105
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=3e-18 Score=160.82 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch---
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 102 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df--- 102 (711)
+|+++|.||+|||||+|+|+ |.....++. .|.|+......+.+.+..+.|+||||.-++
T Consensus 2 ~ialvG~PNvGKStLfN~Lt---g~~~~v~n~---------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT---GAKQKVGNW---------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK 63 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH---TTSEEEEES---------------TTSSSEEEEEEEEETTEEEEEEE----SSSSSS
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCceecCC---------------CCCCeeeeeEEEEecCceEEEEECCCcccCCCC
Confidence 68999999999999999995 655555543 366888888899999999999999996543
Q ss_pred H-HH--HHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 T-LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~-~~--~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+ .+ +..++ ...|++++|+|++. ..+...+..++.+.++|+++++||+|...
T Consensus 64 s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 64 SEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp SHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred CcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 1 11 23333 46799999999987 34566777888999999999999999753
No 106
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.75 E-value=2e-17 Score=159.38 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=82.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
||+++|++|+|||||+++|....... ++... .....|+......+.+++..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLPP-------SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCcc-------cccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 68999999999999999997432210 00000 01122444445566778899999999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
+...++.+|++++|+|+++.-.. .....+..+. ..++|+++++||+|+...
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 89999999999999999864221 1222233222 357999999999998653
No 107
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=3.5e-17 Score=173.85 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d- 101 (711)
....|||+|.||+|||||+|+|+ |......+. ..|.|+++....++|++..+.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il---geeR~Iv~~--------------~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL---GEERVIVSD--------------IAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc---cCceEEecC--------------CCCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 46899999999999999999996 443333332 236699999999999999999999999653
Q ss_pred ---------h-HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 102 ---------F-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ---------f-~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
| ...+..++..+|.+++|+|+++|+..|...+...+.+.+.++++|+||+|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2 344778999999999999999999999999999999999999999999998654
No 108
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=5.3e-17 Score=169.14 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch---
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 102 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df--- 102 (711)
.|+++|++|+|||||+|+|+ |......+..+++ |...........+.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~---~~~~~~vs~~~~T--------------Tr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH---GQKISITSPKAQT--------------TRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCcEeecCCCCCc--------------ccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 58999999999999999997 2211111111222 222222223345678999999997642
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 -----~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...+..++..+|++++|+|++.+.... ..++..+...+.|+++|+||+|+..
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF 121 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC
Confidence 233566788999999999999865554 5566777778999999999999863
No 109
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=5.7e-17 Score=173.75 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+|+|+... .. ..+.. .+.|.......+.+++.+++||||||+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k--~~-ivs~k--------------~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEK--LS-IVTPK--------------VQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCc--ee-eccCC--------------CCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 45699999999999999999997221 11 11111 122433334455678889999999998542
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 --------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 --------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
......+++.+|++|+|+|+..+.......++..+...+.|.++|+||+|+..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 22234567899999999999988877777777777778889999999999854
No 110
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.74 E-value=1.3e-17 Score=141.34 Aligned_cols=85 Identities=31% Similarity=0.420 Sum_probs=80.2
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcccc
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 400 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 400 (711)
++||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++.+|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3789999999999999999999999999999999999876 667899999999999999999999999999999999999
Q ss_pred CccccC
Q 005154 401 GETLCD 406 (711)
Q Consensus 401 Gdtl~~ 406 (711)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999963
No 111
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=4.1e-18 Score=168.88 Aligned_cols=250 Identities=20% Similarity=0.330 Sum_probs=178.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-------------
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 86 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~------------- 86 (711)
..+-..||+.+||+.|||||++.++ +|. .+-..+.|-+|.||++...+.-..
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAi---SGv------------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~c 98 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAI---SGV------------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGC 98 (466)
T ss_pred hheeeeeecceeccccCcceeeeee---ccc------------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcch
Confidence 3455789999999999999999998 331 122346788899999877665332
Q ss_pred --------------------c----CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-CChhHHHHHHHHHhcC
Q 005154 87 --------------------N----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYG 141 (711)
Q Consensus 87 --------------------~----~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-~~~~t~~~~~~~~~~~ 141 (711)
+ -+.+.|+|+|||+-....+..+....|++++++.+++. .++||-+++....-+.
T Consensus 99 y~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 99 YRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred hhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 0 13578999999999999999999999999999999864 7899999999888888
Q ss_pred CCeEE-EEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHH
Q 005154 142 VPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQK 220 (711)
Q Consensus 142 ip~iv-viNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 220 (711)
++.++ +-||+|+...+. ..++.
T Consensus 179 LkhiiilQNKiDli~e~~--A~eq~------------------------------------------------------- 201 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQ--ALEQH------------------------------------------------------- 201 (466)
T ss_pred hceEEEEechhhhhhHHH--HHHHH-------------------------------------------------------
Confidence 88765 569999875431 11110
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCC
Q 005154 221 MAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLP 300 (711)
Q Consensus 221 ~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~ 300 (711)
+++.++++.....+ -|+++.||.-+.+++.+.++|++.+|-|..
T Consensus 202 --------------------------------e~I~kFi~~t~ae~--aPiiPisAQlkyNId~v~eyivkkIPvPvR-- 245 (466)
T KOG0466|consen 202 --------------------------------EQIQKFIQGTVAEG--APIIPISAQLKYNIDVVCEYIVKKIPVPVR-- 245 (466)
T ss_pred --------------------------------HHHHHHHhccccCC--CceeeehhhhccChHHHHHHHHhcCCCCcc--
Confidence 11222222111111 388899999999999999999999999976
Q ss_pred CCCCCCCCCcccccccccCCCCCeEEEEEEEee--------cCCCCeEEEEEEEeeEeCCCCEEEeCCC------Cceee
Q 005154 301 AMKGTDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANK------GKKER 366 (711)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------~~~~g~l~~~RV~sG~l~~gd~v~~~~~------~~~~~ 366 (711)
|...|..+.|.+.+. +.-.|-++-|-+..|.|+.||.|.+.+. +...+
T Consensus 246 ------------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~ 307 (466)
T KOG0466|consen 246 ------------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIK 307 (466)
T ss_pred ------------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEE
Confidence 235566677766654 2345779999999999999999985431 11111
Q ss_pred ----cceeEEeccCceeecCeeecCCEEEE-eCCC
Q 005154 367 ----IGRLLEMHANSREDVKVALAGDIIAL-AGLK 396 (711)
Q Consensus 367 ----v~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~ 396 (711)
.++|..+.+. ..+++.|.+|-.+++ +.++
T Consensus 308 C~Pi~SrI~sL~AE-~n~L~~AvPGGLIGVGT~~D 341 (466)
T KOG0466|consen 308 CRPIFSRIVSLFAE-QNDLQFAVPGGLIGVGTKMD 341 (466)
T ss_pred EeeHHHHHHHHHhh-hccceeecCCceeeeccccC
Confidence 3344444443 356888999998888 3344
No 112
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=5.2e-17 Score=154.26 Aligned_cols=112 Identities=25% Similarity=0.300 Sum_probs=86.8
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH---
Q 005154 28 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--- 104 (711)
Q Consensus 28 ~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~--- 104 (711)
+++|++|+|||||+++|+.... ... +...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~---~~~--------------~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD---AIV--------------EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE---Eee--------------cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 5899999999999999972210 000 01124455555566677889999999999998543
Q ss_pred -----HHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 105 -----EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 105 -----~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+...++.+|++++|+|+.++.......+++.+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 5567788999999999999888777777888888889999999999998754
No 113
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=8.6e-17 Score=179.48 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=94.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|++|+|||||+|+|+..... .. ....|.|..+....+.+++..+++|||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~---~~--------------~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERV---IV--------------SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCce---ee--------------cCCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 4689999999999999999999732211 11 113467888877778888999999999997542
Q ss_pred -----------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 -----------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 -----------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...+.++++.+|++|+|+|++++...++..++.++.+.++|+++|+||+|+..
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 12345688999999999999999999999999999999999999999999863
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=8.3e-17 Score=179.39 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...+|+++|++|+|||||+|+|+..... .. ....|.|.......+.+++..+.+|||||+.+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~---~~--------------~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV---IV--------------SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee---ec--------------CCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 34579999999999999999999732211 00 11246677777777778888999999999865
Q ss_pred hH-----------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 102 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 102 f~-----------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
+. ..+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 42 224567899999999999999999999999999999999999999999987
No 115
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=2.3e-16 Score=152.20 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+..... .. +..++.|.......+...+..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---IV--------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---ec--------------cCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 468999999999999999999732211 00 0112334444445566677889999999976541
Q ss_pred -----------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 104 -----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 -----------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 12345678899999999999988888878888888889999999999998754
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.72 E-value=7.8e-17 Score=154.23 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|....... ....+ |+......+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~---~~~~~----------------t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS---QIIVP----------------TVGFNVESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc---ceecC----------------ccccceEEEEECCEEEEEEECCCCHhhHHH
Confidence 58999999999999999996321100 00000 111122234567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH------HhcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQA------DKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~------~~~~ip~ivviNK~D~~~~ 156 (711)
+..+++.+|++|+|+|+++..... ....+..+ ...++|+++|+||+|+...
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999999999999999998754321 11222222 1247999999999998654
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=1.5e-16 Score=154.58 Aligned_cols=113 Identities=21% Similarity=0.195 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+.. .. ... +. |+......+.+++..+++|||||+..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~---~~~------------~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DI---DTI------------SP----TLGFQIKTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CC---CCc------------CC----ccccceEEEEECCEEEEEEECCCCHHH
Confidence 3478999999999999999999621 00 000 01 111122234456789999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH----HhcCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~----~~~~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++++|+|+++.-... ....+..+ ...++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 888888999999999999998752211 11222222 2357899999999998653
No 118
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=2.8e-16 Score=151.24 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
..++|+++|++|+|||||+++++. +..... ....+........+.+++ ..+++|||||+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSER----------------QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCccc----------------CCCccceEEEEEEEEECCEEEEEEEEECCChH
Confidence 468999999999999999999962 211100 000111222233444444 578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH---hcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
+|...+...++.+|++++|+|+++....+.. .++..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9998889999999999999999876543333 2333332 24789999999999864
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=2.1e-16 Score=150.92 Aligned_cols=110 Identities=23% Similarity=0.208 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|.. +.... ..+ |+......+.+.+..+++|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~~------------~~~-------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVVT------------TIP-------TIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCcC------------cCC-------ccCcCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 488999999999999999952 11100 000 222222345567889999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChh-HHHHHH-HHH---hcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQ-SETVWR-QAD---KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~-t~~~~~-~~~---~~~ip~ivviNK~D~~~~ 156 (711)
+..+++.+|++|+|+|+++..... ....+. .+. ..++|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 889999999999999998743221 122222 222 247899999999998654
No 120
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.7e-16 Score=176.39 Aligned_cols=117 Identities=25% Similarity=0.368 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+.++|+|+|.+|+|||||+|+|+..... . .+...|+|.+.....+.+.+..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~---~--------------v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA---V--------------VEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc---c--------------ccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 34689999999999999999999722110 0 111236677766777788899999999999863
Q ss_pred --------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 --------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 --------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+...+..+++.+|++|+|+|++.+.......+...+...++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 445567789999999999999999887777888888888999999999999854
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=2.7e-16 Score=149.99 Aligned_cols=110 Identities=23% Similarity=0.206 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++++... ... ...|+......+.+.+..+.+|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT-------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC-------------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 48999999999999999997222 000 001222223345567889999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCC-hhHHHHHHH----HHhcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVE-PQSETVWRQ----ADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~-~~t~~~~~~----~~~~~ip~ivviNK~D~~~~ 156 (711)
....++.+|++++|+|++..-. ......+.. +...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 8889999999999999997521 112223322 22358999999999998754
No 122
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.70 E-value=9.1e-17 Score=135.88 Aligned_cols=83 Identities=51% Similarity=0.773 Sum_probs=79.0
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCcc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 403 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 403 (711)
|+++|||+.++++.|+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|++++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57899999999999999999999999999999999888878899999999999999999999999999999999999999
Q ss_pred ccC
Q 005154 404 LCD 406 (711)
Q Consensus 404 l~~ 406 (711)
|+.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 973
No 123
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.4e-16 Score=175.61 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC--
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-- 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~-- 100 (711)
..++|+++|++|+|||||+++|+.... ...+ ...|+|.+.....+.+++..+.||||||..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~---~~~s--------------~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER---SVVD--------------DVAGTTVDPVDSLIELGGKTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc---cccc--------------CCCCccCCcceEEEEECCEEEEEEECCCcccc
Confidence 468999999999999999999972211 1111 123456655556677788899999999963
Q ss_pred -------chHHH--HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 -------DFTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 -------df~~~--~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
++... ...+++.+|++|+|+|++++...+...++..+...++|+++|+||+|+..
T Consensus 273 ~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 273 VKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 22222 23467899999999999999999988888888889999999999999865
No 124
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.69 E-value=5.4e-16 Score=150.79 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=80.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
.++|+++|++|+|||||+++|+. +..... ..|+......+.+++..+.+|||||+..|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~~~-------------------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVVHT-------------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLR 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCCCc-------------------CCccccceEEEEECCeEEEEEECCCCHHHH
Confidence 57899999999999999999962 211100 113333334556678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChh--HHHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~--t~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|+++..... ...+.+.+.. .++|+++++||+|+..
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 88999999999999999998753221 1222222222 3689999999999865
No 125
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=5.2e-16 Score=148.85 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++++......... ...+.++......+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL----------------STYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC----------------CceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 68999999999999999997321110000 00122222222333334568899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHhc--CCCeEEEEeccCcC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY--GVPRICFVNKMDRL 154 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~--~ip~ivviNK~D~~ 154 (711)
+..+++.+|++|+|+|++++...+.. .++..+.+. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999876554433 333444433 79999999999974
No 126
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=1.1e-15 Score=161.38 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=82.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+...|+++|++|+|||||+|+|+ |......+..+++ |...........+..+.+|||||+.+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~---g~~~~~vs~~~~t--------------t~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV---GQKISIVSPKPQT--------------TRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh---CCceeecCCCCCc--------------ccccEEEEEEcCCceEEEEECCCCCCc
Confidence 35679999999999999999996 2211111111111 111111222235579999999997653
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 --------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 --------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...+..++..+|++++|+|++.+.......++..+...++|+++|+||+|+..
T Consensus 67 ~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 67 KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 33455678899999999999997777777777777777899999999999863
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=5.1e-16 Score=149.91 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe-eEEEEeCCCCCc---
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD--- 101 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~-~i~liDtPG~~d--- 101 (711)
+|+++|++|+|||||+++|.... ...+. .+ +.|+......+.+.+. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~---~~v~~-~~--------------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK---PKIAD-YP--------------FTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC---ccccC-CC--------------ccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 79999999999999999996211 11111 01 2233334444555666 999999999752
Q ss_pred ----hHHHHHHHHHhcCeEEEEEeCCCC-CChhHH-HHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 102 ----FTLEVERALRVLDGAICLFDSVAG-VEPQSE-TVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ----f~~~~~~~l~~~D~~llvvda~~g-~~~~t~-~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
+...+.+.+..+|++++|+|+++. -..+.. .+.+.+.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 344455667789999999999976 222222 23333332 36899999999998643
No 128
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=3.2e-16 Score=174.69 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC-----
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----- 100 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~----- 100 (711)
+|+++|++|+|||||+|+|+.... ... +...|+|.+.....+.|.+..+++|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---~~v--------------~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---AIV--------------SDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---cee--------------cCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 489999999999999999962221 111 1123667777777888899999999999974
Q ss_pred ---chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 101 ---DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 ---df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+...+..+++.+|++++|+|+..+.......+.+.+++.++|+++|+||+|....
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc
Confidence 34556778899999999999999999999988999999999999999999998643
No 129
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.68 E-value=9.4e-16 Score=147.01 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|.+|+|||||+++++......... .+. +... .....+......+++|||||+.+|.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-----~t~-----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 64 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYD-----PTI-----------EDSY-TKQCEIDGQWAILDILDTAGQEEFS 64 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccC-----CCc-----------cceE-EEEEEECCEEEEEEEEECCCCcchh
Confidence 3589999999999999999997432210000 000 0001 1111222233578899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
..+...++.+|++++|+|+++....+.. .++..+ ...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 65 AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 9999999999999999999874332221 222222 234789999999999864
No 130
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.68 E-value=6.7e-16 Score=152.22 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|+.|+|||||+++|.. +.... . ..|+......+.+.+..+++|||||+.+|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~--~~~~~---~----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD--DRLAQ---H----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc--CCCcc---c----------------CCccCcceEEEEECCEEEEEEECCCCHHH
Confidence 357889999999999999999962 11100 0 01222233455667889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
...+..+++.+|++++|+|+++.-.. .....+..+ ...+.|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 88888899999999999999864221 122222222 235699999999999864
No 131
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=8.1e-16 Score=147.21 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|+.......... ..+.........+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQH----------------TIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------------ceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 789999999999999999973221110000 0112222222333333468899999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHH---HhcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~---~~~~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|+++....+....| ... ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 89999999999999999986554433333 322 235889999999999854
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=1.1e-15 Score=147.35 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH-
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~- 103 (711)
|+|+++|++|+|||||+++|+..... .. ...+.|.......+.+++..++||||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---~~---------------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---VA---------------PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---cC---------------CCCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 68999999999999999999632110 00 011224444444455577899999999985321
Q ss_pred -------HHHHHHH-HhcCeEEEEEeCCCCCC---hhHHHHHHHHHhc--CCCeEEEEeccCcCC
Q 005154 104 -------LEVERAL-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 155 (711)
Q Consensus 104 -------~~~~~~l-~~~D~~llvvda~~g~~---~~t~~~~~~~~~~--~ip~ivviNK~D~~~ 155 (711)
.....++ ..+|++|+|+|+++... .....++..+... ++|+++|+||+|...
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 1112222 23699999999986432 1223444555444 799999999999864
No 133
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.67 E-value=1.1e-15 Score=147.87 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|.. +... ...+ .-|.++ ..+...+..+++|||||+..|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~--~~~~---~~~~------------t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKL--GQSV---TTIP------------TVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHcc--CCCc---cccC------------Ccccce----EEEEECCEEEEEEECCCCHHHH
Confidence 47899999999999999999962 1110 0000 012222 2334567899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++|+|+|+++.... .....+.... ..++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 8888899999999999999874322 1222232222 24689999999999864
No 134
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.67 E-value=2.8e-16 Score=132.87 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.3
Q ss_pred EEEEEEee---cCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCc
Q 005154 326 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 402 (711)
Q Consensus 326 ~~V~k~~~---~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 402 (711)
++|||+.+ +|+.|+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 48999999 999999999999999999999999988777889999999999999999999999999999999999999
Q ss_pred cccC
Q 005154 403 TLCD 406 (711)
Q Consensus 403 tl~~ 406 (711)
||++
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9984
No 135
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.67 E-value=3.2e-16 Score=132.64 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.0
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCcc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 403 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 403 (711)
++++|||+.++++.|+++++|||+|+|++||.|++...++.+++.+|+.++|.+..+++++.||||+++.|++++++|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 47899999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ccC
Q 005154 404 LCD 406 (711)
Q Consensus 404 l~~ 406 (711)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 863
No 136
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=8.7e-16 Score=146.79 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC----C
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 100 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~----~ 100 (711)
++|+++|++|+|||||+++|. |.... . .......+... .+|||||. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~~----------------------~--~~~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYTL----------------------A--RKTQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCcc----------------------C--ccceEEEECCC--CcccCCccccCCH
Confidence 479999999999999999984 21100 0 01112222222 37999996 4
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
++..++..+++.+|++++|+|++++.......++.. ..+.|+++++||+|+...+
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc
Confidence 566667778899999999999998765444333332 3468999999999986543
No 137
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.66 E-value=2.2e-15 Score=146.62 Aligned_cols=112 Identities=19% Similarity=0.122 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|..|+|||||++++.. +... +..+ |+......+.+++..+.+|||||+..|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~~------------~~~~-------t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GESV------------TTIP-------TIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCC------------CcCC-------ccccceEEEEECCEEEEEEECCCChhhH
Confidence 47899999999999999999962 2110 0000 2222222344577899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
..+...++.+|++|+|+|+++.... ...+.+..+. ..++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 8888999999999999999864221 2233333332 236899999999998653
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=150.46 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|.+|+|||||+++|. +..... +...|.|..... +.+. .+++|||||+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~---~~~~~~---------------~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 64 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELT---GKKVRV---------------GKRPGVTRKPNH--YDWG--DFILTDLPGFGF 64 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCcc---------------CCCCceeeCceE--Eeec--ceEEEeCCcccc
Confidence 446789999999999999999996 211111 112245554433 2233 689999999532
Q ss_pred -----------hHHHHHH----HHHhcCeEEEEEeCCCCC-----------ChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 -----------FTLEVER----ALRVLDGAICLFDSVAGV-----------EPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 -----------f~~~~~~----~l~~~D~~llvvda~~g~-----------~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|...+.. .+..+|++++|+|+.... ...+.+++..+...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 65 MSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIK 144 (201)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccC
Confidence 3322222 334568999999997432 22345667777778999999999999865
Q ss_pred ccHHHHHHHHHHHh
Q 005154 156 ANFFRTRDMIVTNL 169 (711)
Q Consensus 156 ~~~~~~~~~l~~~l 169 (711)
.+ .+..+++.+.+
T Consensus 145 ~~-~~~~~~~~~~~ 157 (201)
T PRK04213 145 NR-DEVLDEIAERL 157 (201)
T ss_pred cH-HHHHHHHHHHh
Confidence 43 23344444333
No 139
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=1.5e-15 Score=149.02 Aligned_cols=113 Identities=18% Similarity=0.099 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|.+|+|||||+++|.. +.... ..+ |.......+.+++..++++||||+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~--~~~~~---~~~----------------t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN--DRLAQ---HQP----------------TQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc--CCCcc---cCC----------------ccccceEEEEECCEEEEEEECCCCHH
Confidence 3458899999999999999999962 11100 000 22222334456788999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
+...+..+++.+|++++|+|+++.... .....+..+. ..++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 988888999999999999999864221 1222222222 25789999999999864
No 140
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=9.3e-16 Score=180.03 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=90.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+..++|+++|++|+|||||+|+|+..... ... ...|.|.+.....+.+++..+.||||||+.+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~---~v~--------------~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERA---VVN--------------DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc---ccC--------------CCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 34689999999999999999999732211 011 1234466665566777888999999999642
Q ss_pred ---------hHHH--HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 ---------f~~~--~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|... ...+++.+|++++|+|++++...+...++..+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 2222 34567899999999999999999999999888889999999999999865
No 141
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.66 E-value=1.8e-15 Score=144.80 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||++++.. +.... +.+ .-|.. ...+......+++|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~~------------~~p---t~g~~----~~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIVT------------TIP---TIGFN----VETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCcc------------cCC---CCCcc----eEEEEECCEEEEEEECCCCHhHHHH
Confidence 689999999999999999962 21110 000 01211 1234456789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
+..+++.+|++|+|+|+++.... +....+..+.. .+.|+++++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 88999999999999999863211 12222332221 3589999999999864
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=9.2e-16 Score=146.03 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=79.6
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH---
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--- 105 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~--- 105 (711)
++|++|+|||||+++++ +.....+ ...|+|+......+.+.+..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQKVG---------------NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHh---cCccccc---------------CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 58999999999999996 2111111 12366777777777888889999999999887532
Q ss_pred ---HHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 106 ---VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ---~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
....+. .+|++++|+|+... ......+.++...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 334443 89999999999863 23344556667789999999999998653
No 143
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=143.61 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=103.3
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEE
Q 005154 13 YESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRIN 92 (711)
Q Consensus 13 ~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~ 92 (711)
+.....+|.+..+.||++|.+|+|||||+|+|+...+ ..+.+ +..|.|.......+.. .+.
T Consensus 13 a~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtS---------------ktPGrTq~iNff~~~~---~~~ 73 (200)
T COG0218 13 APDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LARTS---------------KTPGRTQLINFFEVDD---ELR 73 (200)
T ss_pred cCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc-eeecC---------------CCCCccceeEEEEecC---cEE
Confidence 3445667888899999999999999999999973222 12221 1236677777665532 389
Q ss_pred EEeCCCCCc----------hHHHHHHHHH---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc-cH
Q 005154 93 IIDTPGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 158 (711)
Q Consensus 93 liDtPG~~d----------f~~~~~~~l~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~-~~ 158 (711)
|+|.||+.- +...+..++. ...++++++|+.+++....+++++.+...++|+++++||+|+... +.
T Consensus 74 lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 74 LVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 999999752 2333444553 358999999999999999999999999999999999999999874 34
Q ss_pred HHHHHHHHHHhCC
Q 005154 159 FRTRDMIVTNLGA 171 (711)
Q Consensus 159 ~~~~~~l~~~l~~ 171 (711)
.+.+..+++.+..
T Consensus 154 ~k~l~~v~~~l~~ 166 (200)
T COG0218 154 NKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhcC
Confidence 4555666655543
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=2e-15 Score=177.19 Aligned_cols=118 Identities=22% Similarity=0.347 Sum_probs=95.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
+...++|+|+|++|+|||||+|+|+.... ... +...|+|.+.......|.+..+++|||||+.
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~---~iv--------------~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~ 334 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRRE---AVV--------------EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE 334 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCc---eee--------------cCCCCeeEEEEEEEEEECCEEEEEEeCCCcC
Confidence 34568999999999999999999972211 111 1123667777777788889999999999976
Q ss_pred c--------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 D--------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 d--------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
. |...+..+++.+|++|+|+|+++++......+.+.++..++|+++|+||+|...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 335 ADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred CCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 3 556677889999999999999999988888888888899999999999999753
No 145
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.66 E-value=1.6e-15 Score=146.69 Aligned_cols=109 Identities=17% Similarity=0.059 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+++|... ... +. ..|+......+.+.+..+++|||||+.+|...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~------------~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM------------QP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC------------Cc-------CCcCceeEEEEEECCEEEEEEECCCChhcchH
Confidence 4789999999999999999621 110 00 01222222345667889999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
+..+++.+|++++|+|+++.-.. .....+..+. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 88999999999999999864211 1222333332 13479999999999854
No 146
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=1.8e-15 Score=145.71 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|.+|+|||||+++|+...- ... +.+ .-|++..............+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~-----------~~~---t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TSA-----------FVS---TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCC-----------CCC---ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 5799999999999999999972211 000 000 012222222222222346799999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.....++.+|++++|+|.++....+. ..++..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 89999999999999999986432222 223333333 3678999999999854
No 147
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.66 E-value=5.6e-16 Score=130.30 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=76.8
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCcc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 403 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 403 (711)
|+++|||+.+|++ |+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|++ +++|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5789999999988 99999999999999999999988888899999999999999999999999999999998 999999
Q ss_pred ccC
Q 005154 404 LCD 406 (711)
Q Consensus 404 l~~ 406 (711)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 963
No 148
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=2.3e-15 Score=144.14 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE--ecCeeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~--~~~~~i~liDtPG~~df~ 103 (711)
+|+++|.+|+|||||+++++...... +..+ ..+.........+. .....+++|||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-------------DYKK---TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-------------CCCC---cEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 68999999999999999997321100 0000 00111111112222 234689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHH-HH--hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD--KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~-~~--~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|+++.........|.. +. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 889999999999999999987544333333322 22 24799999999999854
No 149
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=2.3e-15 Score=144.46 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++........ ..+ ..| .......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~-----~~t-~~~-----------~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY-----DPT-IED-----------SYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc-----CCc-hhh-----------hEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 6899999999999999999732211000 000 000 01111122223467889999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHH----HhcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETV-WRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|+++......... +..+ ...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8899999999999999986433222211 2222 234789999999999864
No 150
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.65 E-value=1.8e-15 Score=148.30 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEE-EecCeeEEEEeCCCCCchH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-YWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~i~liDtPG~~df~ 103 (711)
..|+++|++|+|||||+++++..... ... + ..|.+........ .+.+..+++|||||+..|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~----~~~----------~---t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV----NTV----------P---TKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC----CcC----------C---ccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 56899999999999999999732211 000 0 0122222211111 2246789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-----HHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-----ETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-----~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..+...++.+|++|+|+|+++.-.... .++.......++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 888888999999999999987522211 1222333346799999999999864
No 151
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=2.7e-15 Score=146.86 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|..|+|||||++++.. +.... . .. |+......+.+++..+++|||||+..|.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~---~------------~p----t~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT---T------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc---c------------cC----CcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999952 21110 0 00 2122223455678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH-H---hcCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA-D---KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~-~---~~~ip~ivviNK~D~~~~ 156 (711)
..+...++.+|++|+|+|+++..... ....+... . ..++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 88899999999999999998643221 11222222 1 136899999999998654
No 152
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=3.6e-15 Score=143.89 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|.+|+|||||++++.... .... .. ..-|.+.......+......+++|||||+.+|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~--f~~~--~~------------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 65 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDS--FNPS--FI------------STIGIDFKIRTIELDGKKIKLQIWDTAGQERF 65 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCc--CCcc--cc------------cCccceEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 36899999999999999999997321 1100 00 00122222222222223357899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.......++.+|++|+|+|++++...... .++..+.. .++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88888899999999999999875443322 22222332 4689999999999864
No 153
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=9.1e-15 Score=139.72 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
.+.|+++|.+|+|||||+++|+ +.......... ..+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV---GQKISIVSPKP--------------QTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCceEeccCCC--------------CceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 4689999999999999999996 22111110000 112222222334456789999999987542
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 --------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
......+..+|++++|+|+++........+.+.+...+.|.++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 2345568889999999999988666666667777777899999999999863
No 154
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=2.4e-15 Score=145.10 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
...++|+++|++|+|||||+++++. +..... . ...++.......+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~~----~------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPPG----Q------------GATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCCC----C------------CCceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 3479999999999999999999962 111100 0 01112223333344555 45788999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH----HHHHhcCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~----~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++++|+|++++........| +.....++|.++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999889999999999999999875433322222 222334789999999999854
No 155
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=3.2e-15 Score=144.42 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++++.... ..... ...|.+.......+......+++|||||+..|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~--~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHD--------------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCC--------------CccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 57899999999999999999972211 10000 011223333333333334679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHHh---cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
......++.+|++|+|+|+++....+.... +..+.. .++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 888899999999999999986444333322 233333 3789999999999863
No 156
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=2.7e-15 Score=145.05 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|+...-..... ...+.+.......+......+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK----------------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcC----------------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 68999999999999999997321100000 00011111111222112356789999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHH-----HH---hcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQ-----AD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~-----~~---~~~ip~ivviNK~D~~~ 155 (711)
....++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 8899999999999999987543222222211 11 12789999999999864
No 157
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=3.7e-15 Score=142.78 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|++|+|||||+++|+...- ... .....|.+.......+...+..+++|||||+..|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~--------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~ 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SEN--------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 4789999999999999999973221 110 001112233333444444557889999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.....++.+|++++|+|+++.... +...++..+.. .++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 888889999999999999864322 22333333333 3578999999999763
No 158
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=2.2e-15 Score=144.75 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|+.......... .-|.+.......+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLP----------------TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------------ccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 689999999999999999973221100000 0111222222333334578999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHh--------cCCCeEEEEeccCcC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--------YGVPRICFVNKMDRL 154 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~--------~~ip~ivviNK~D~~ 154 (711)
....++.+|++|+|+|.++........ ++..+.+ .+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 888899999999999998653322222 2222221 458899999999985
No 159
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1.9e-15 Score=147.64 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=85.7
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEe
Q 005154 16 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 95 (711)
Q Consensus 16 ~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liD 95 (711)
....+..+..+|+|+|++|+|||||+++|+.... ..... ...|.|....... ++ ..+++||
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~~~---------------~~~~~t~~~~~~~--~~-~~~~liD 70 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKK-LARTS---------------KTPGRTQLINFFE--VN-DGFRLVD 70 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccccc---------------CCCCcceEEEEEE--eC-CcEEEEe
Confidence 3455667789999999999999999999973211 00000 0113344333222 22 3799999
Q ss_pred CCCCC----------chHHHHHHHHH---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 96 TPGHV----------DFTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 96 tPG~~----------df~~~~~~~l~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|||+. +|...+..+++ .+|++++|+|++.+....+..+++.+...++|+++|+||+|+..
T Consensus 71 tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 71 LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99964 23333344444 45899999999999988888888888889999999999999864
No 160
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=3e-15 Score=146.64 Aligned_cols=112 Identities=19% Similarity=0.146 Sum_probs=77.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|..|+|||||++++. .+.... .. . |+......+...+..+++|||||+..|.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~--~~~~~~------------~~---~----T~~~~~~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLK--LGEVVT------------TI---P----TIGFNVETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh--cCCccc------------cC---C----ccccceEEEEECCEEEEEEECCCCHhHH
Confidence 4689999999999999999995 221110 00 0 1112222345578899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHH-Hh---cCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA-DK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~-~~---~~ip~ivviNK~D~~~~ 156 (711)
..+..+++.+|++|+|+|+++.-.. .....+... .. .+.|+++|+||.|+...
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 8889999999999999999753211 112222222 21 35899999999998653
No 161
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.65 E-value=4.2e-15 Score=141.87 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|.+|+|||||+++++.... .. .. ..+ . +.+. .....+....+.+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~--~~-~~t-~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VD--EY-DPT-I----------EDSY-RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cC--Cc-CCc-c----------hheE-EEEEEECCEEEEEEEEECCCCcchHH
Confidence 3689999999999999999973221 10 00 000 0 0011 11112222235688999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
.+..+++.+|++++|+|.++....+.. .++..+. ..++|+++|+||+|+..
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999864322222 2222222 34789999999999864
No 162
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=3.7e-15 Score=143.48 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|.+|+|||||+++++........ .+ ..|.+.......+......+++|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~-------------~~---t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY-------------IS---TIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------CC---ccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 468999999999999999999722110000 00 01222222222222234578999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
......++.+|++|+|+|+++...... ..++..+.. .++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 888899999999999999987432222 223333332 4689999999999754
No 163
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=3.7e-15 Score=143.59 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
+.+|+++|+.|+|||||++++.. +...... +. .-|.++......+......+.+|||||+..|.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~--~~~~~~~---~~-----------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTE--KKFMADC---PH-----------TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CCCCCCC---Cc-----------ccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 46899999999999999999972 2111100 00 01222222222232234678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHH---hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
..+...++.+|++|+|+|.++....+... ++.... ..+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 98999999999999999998754433332 223222 24678999999999864
No 164
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.64 E-value=3.5e-15 Score=142.96 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
+|+++|++|+|||||+++++...- .. .....++.......+.+++ ..+++|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE----------------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 689999999999999999972211 00 0001112222223334444 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh---cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~---~~ip~ivviNK~D~~~ 155 (711)
......++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 8899999999999999999875444433323 23322 4689999999999754
No 165
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=4.1e-15 Score=148.15 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-ecCeeEEEEeCCCCCchHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~i~liDtPG~~df~~ 104 (711)
+|+++|.+|+|||||+++|+... ... .+.+ ..|.........+. .....+++|||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~-----------~~~~---t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQ-----------HYKA---TIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC-----------CCCC---ceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 68999999999999999997321 100 0000 00111112222222 2356789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH-------hcCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-------KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~-------~~~ip~ivviNK~D~~~ 155 (711)
.+...++.+|++|+|+|.+.....+....| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 889999999999999999865433332222 2221 25689999999999863
No 166
>PTZ00369 Ras-like protein; Provisional
Probab=99.64 E-value=3.4e-15 Score=147.24 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|.+|+|||||+++++.... ... +.+ .-+.+. .....+....+.+++|||||+.+|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~-----------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDE-----------YDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcC-----------cCC---chhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 47899999999999999999973211 100 000 001111 1122233344678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999875432222 2222222 23789999999999754
No 167
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=4.1e-15 Score=142.28 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|+....... .+...+.+.......+......+.+|||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 689999999999999999973211100 0011122333222223223467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHH----HhcCCCeEEEEeccCcC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRL 154 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~----~~~~ip~ivviNK~D~~ 154 (711)
....++.+|++++|+|.++....+....| ..+ ...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 88889999999999999865443332222 222 23578999999999986
No 168
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=4.7e-15 Score=148.06 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=80.0
Q ss_pred hhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe
Q 005154 7 EKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 7 ~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
..+|...+.... .+..++|+|+|++|+|||||+++|+...... .. ..+.|+......+.+
T Consensus 26 ~~~~~~~~~~~~--~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~---~~---------------~~~~t~~~~~~~~~~ 85 (204)
T cd01878 26 KKQRELQRRRRK--RSGIPTVALVGYTNAGKSTLFNALTGADVYA---ED---------------QLFATLDPTTRRLRL 85 (204)
T ss_pred HHhHHHHHHhhh--hcCCCeEEEECCCCCCHHHHHHHHhcchhcc---CC---------------ccceeccceeEEEEe
Confidence 334444443322 2336899999999999999999997321100 00 001233333344444
Q ss_pred cCe-eEEEEeCCCCCch-H-------HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHH---HhcCCCeEEEEeccCc
Q 005154 87 NKH-RINIIDTPGHVDF-T-------LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA---DKYGVPRICFVNKMDR 153 (711)
Q Consensus 87 ~~~-~i~liDtPG~~df-~-------~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~---~~~~ip~ivviNK~D~ 153 (711)
.+. .+++|||||+.+. . ..+...+..+|++++|+|++++...... .+.+.+ ...++|+++|+||+|+
T Consensus 86 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 86 PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred cCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 444 8999999998531 1 1122346689999999999976544332 222222 2346899999999998
Q ss_pred CCc
Q 005154 154 LGA 156 (711)
Q Consensus 154 ~~~ 156 (711)
...
T Consensus 166 ~~~ 168 (204)
T cd01878 166 LDD 168 (204)
T ss_pred CCh
Confidence 654
No 169
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=5.9e-15 Score=139.95 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=77.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHH
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 106 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~ 106 (711)
|+++|++|+|||||+++|..... ..++.+ |+......+...+..+.+|||||+..|...+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-------------~~~~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-------------SEDTIP-------TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-------------CcCccC-------CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 78999999999999999962111 001111 2222222344566889999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCCC-hhHHHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 107 ERALRVLDGAICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 107 ~~~l~~~D~~llvvda~~g~~-~~t~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
..+++.+|++++|+|+++... .+....+..+. ..++|+++|+||+|....
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999999999999999986322 22223333332 257899999999998654
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=4.3e-15 Score=165.84 Aligned_cols=114 Identities=25% Similarity=0.285 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc---
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d--- 101 (711)
++|+++|++|+|||||+|+|+.... .... ...|+|.+.....+.+.+..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~---~~v~--------------~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD---AIVA--------------DTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---eeeC--------------CCCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 5799999999999999999962211 1111 1235566666667788889999999999988
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 -----f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+...+..+++.+|++|+|+|+.++.......+...+++.++|+++|+||+|...
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 344466788999999999999999888888888888888999999999999643
No 171
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.63 E-value=8.7e-15 Score=139.90 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df 102 (711)
.+|+++|++|+|||||+++|+....... ...+.+.+.....+.+++ ..+++|||||+..|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ------------------YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc------------------CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3789999999999999999973221110 111223333333344444 56899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH-hc--CCCeEEEEeccCcC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KY--GVPRICFVNKMDRL 154 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~-~~--~ip~ivviNK~D~~ 154 (711)
...+...++.+|++++|+|.++....+.. .++.... .. ++|+++++||+|..
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 88889999999999999999875443332 2333332 33 48999999999985
No 172
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=5e-15 Score=141.78 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|.+|+|||||+++++... .... . ..+ ..+ .......+......+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~--~-~~t-~~~-----------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEK--Y-DPT-IED-----------SYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc--c-CCc-hhh-----------hEEEEEEECCEEEEEEEEECCCccccch
Confidence 479999999999999999997321 1100 0 000 000 0011122222335678999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
.....++.+|++++|+|.++...... ..++..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88889999999999999986433222 222333322 3689999999999854
No 173
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=6e-15 Score=141.72 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~df 102 (711)
.+|+++|.+|+|||||+++++. +..... . ..+ . +-+. ...+..+ .+.+++|||||+..|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~--~~~~~~--~-~~t-~----------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ--GIFVEK--Y-DPT-I----------EDSY---RKQVEVDGQQCMLEILDTAGTEQF 62 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh--CCCCcc--c-CCc-c----------hheE---EEEEEECCEEEEEEEEECCCcccc
Confidence 3689999999999999999972 221110 0 000 0 0011 1122333 457789999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
.......++.+|++++|+|.+....... ..++..+. ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999999999999999875433222 22233332 25789999999999854
No 174
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=4.4e-15 Score=143.21 Aligned_cols=113 Identities=22% Similarity=0.185 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++......... ...|+.+.............+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV----------------ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 68999999999999999997321100000 00111222111122224468899999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHhc--CCCeEEEEeccCcC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY--GVPRICFVNKMDRL 154 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~~--~ip~ivviNK~D~~ 154 (711)
....++.+|++|+|+|.+++...+... +...+.+. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 777889999999999998765444332 22333322 69999999999986
No 175
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.63 E-value=5e-15 Score=140.46 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|++|+|||||+++|+.... ...+. ..+.|.......+.+.+..+++|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AIVSD---------------IAGTTRDVIEESIDIGGIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--EeccC---------------CCCCccceEEEEEEeCCEEEEEEECCCcCCCcc
Confidence 4789999999999999999972211 00000 124455555556667788999999999987643
Q ss_pred --------HHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 105 --------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 105 --------~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+...+..+|++++|+|+...........+.. ..+.|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 24457788999999999997665555544444 568999999999998654
No 176
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.62 E-value=8.9e-15 Score=140.60 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|.+|+|||||+++|+...-.... ...++.......+..++ ..+.+|||||+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS------------------KSTIGVEFATRSIQIDGKTIKAQIWDTAGQER 64 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 468999999999999999999722110000 01112222222333333 5789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|.......++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 65 YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 988888899999999999999864333222 22233322 3589999999999754
No 177
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=5.8e-15 Score=143.06 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|... .... . ....|++ ...+.+.+..+.+|||||+..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~--~~~~---~------------~~t~g~~----~~~i~~~~~~~~~~D~~G~~~~ 71 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE--DISH---I------------TPTQGFN----IKTVQSDGFKLNVWDIGGQRAI 71 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC--CCcc---c------------CCCCCcc----eEEEEECCEEEEEEECCCCHHH
Confidence 3678999999999999999999621 0000 0 0011222 2244556789999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHH----HHHHhcCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEP-QSETVW----RQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~----~~~~~~~ip~ivviNK~D~~~~ 156 (711)
...+...++.+|++++|+|+++.... .....+ ......++|+++++||+|+...
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 88888899999999999999863221 112222 2223357999999999998654
No 178
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=7.2e-15 Score=141.88 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+++|.. ... ... ..|+......+.+++..+++|||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~---~~~--~~~----------------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG---EIP--KKV----------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CCC--ccc----------------cCcccceEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999962 110 000 01222223455668899999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh----cCCCeEEEEeccCcCCcc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~----~~ip~ivviNK~D~~~~~ 157 (711)
+..+++.+|++|+|+|+++.-... ....+..+.. .++|+++|+||+|+....
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999999999998753222 2233333322 478999999999987654
No 179
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.62 E-value=9.4e-15 Score=145.15 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
.|+++|..|+|||||+.++..... .. ++. ..-|...... .+.+++ ..+++|||+|+..|.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f--~~-----------~~~---~Ti~~~~~~~--~i~~~~~~v~l~iwDtaGqe~~~ 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF--CE-----------ACK---SGVGVDFKIK--TVELRGKKIRLQIWDTAGQERFN 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC--CC-----------cCC---CcceeEEEEE--EEEECCEEEEEEEEeCCCchhhH
Confidence 588999999999999999973211 10 000 0011122222 233343 788999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHH-HHH---hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~-~~~---~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++|+|+|.++....+....|. .+. ..++|+++|.||+|+..
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999999999999999765444433332 232 24689999999999853
No 180
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=6.9e-15 Score=140.52 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCchHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~df~~ 104 (711)
.|+++|.+|+|||||++++.... ... . .+ ..|.++. .+.. ..+.+++|||||+..|..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~~--~----------~~---t~~~~~~----~~~~~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LVT--T----------IP---TVGFNVE----MLQLEKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--ccc--c----------cC---ccCcceE----EEEeCCceEEEEEECCCCHhHHH
Confidence 37899999999999999997221 100 0 00 0122211 1222 357899999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
.+...++.+|++|+|+|+++..... ....+... ...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888899999999999998753211 12222222 125799999999999864
No 181
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=7.3e-15 Score=140.65 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|+...-.... .+ +..+ .. .....+......+.+|||||+.+|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~-----~~-~~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY-----EP-TKAD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc-----CC-cchh----------hE-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 7899999999999999999732211000 00 0001 00 111122223467999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
...+++.+|++++|+|....-... ....+.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999987532111 122222222 35799999999999864
No 182
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=1.2e-14 Score=138.62 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|+......... .+. +.+.......+......+++|||||+..|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHE-----STT-----------QASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC-----Ccc-----------ceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 79999999999999999997322110000 000 00111112222223357899999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH---hcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~---~~~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|.+++...+....| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888999999999999876443333222 2222 23689999999999864
No 183
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=134.71 Aligned_cols=125 Identities=21% Similarity=0.172 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcce-eeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~-~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~d 101 (711)
-.+|+++|..|+||||++.++......... .++. +.... .|..|+.....++...+ +.++|+|||||.+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~-------~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS-------VSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccc-------ccccc--ccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 468999999999999999999744432111 1110 00000 44578888888888766 8999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcC-CCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~-ip~ivviNK~D~~~~~ 157 (711)
|--.+....+.++++|++||++.+.....+++++.....+ +|++|++||.|+..+.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 9999999999999999999999988876677778777777 9999999999998875
No 184
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61 E-value=1.3e-14 Score=141.52 Aligned_cols=117 Identities=16% Similarity=0.038 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE----------ecCeeEE
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----------WNKHRIN 92 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~----------~~~~~i~ 92 (711)
...+|+++|.+|+|||||++++........... + -|.+.......+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~-----t-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT-----T-----------VGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCC-----c-----------cceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 467899999999999999999963211000000 0 0111111111111 1236789
Q ss_pred EEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 93 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 93 liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
||||||+..|.......++.+|++++|+|+++....+.. .++..+.. .+.|+++|.||+|+..
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 999999999998899999999999999999864433332 22223322 3678999999999854
No 185
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.3e-14 Score=139.87 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|+.|+|||||+++|.... ... .. +. + .+ ..++. ..+...+..+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~--~~-~~-~-~~--------~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPE--NV-PR-V-LP--------EITIP---ADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCc--cC-CC-c-cc--------ceEee---eeecCCeEEEEEEeCCCchhhhHH
Confidence 68999999999999999997321 110 00 00 0 00 11111 112235578999999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-HHH-HHHH--hcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-TVW-RQAD--KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-~~~-~~~~--~~~ip~ivviNK~D~~~~ 156 (711)
+...++.+|++++|+|+++....+.. ..| ..+. ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88888999999999999876554442 223 3333 247899999999998654
No 186
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.61 E-value=1.3e-14 Score=143.77 Aligned_cols=122 Identities=19% Similarity=0.274 Sum_probs=82.9
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEe
Q 005154 16 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 95 (711)
Q Consensus 16 ~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liD 95 (711)
....+++..++|+++|++|+|||||+++|+.... .... ....|.|....... + +..+.|||
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~~---------------~~~~~~t~~~~~~~--~-~~~l~l~D 76 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LART---------------SKTPGRTQLINFFE--V-NDKLRLVD 76 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cccc---------------cCCCCceeEEEEEe--c-CCeEEEeC
Confidence 4455667889999999999999999999973210 1110 00113344333222 2 46899999
Q ss_pred CCCCC----------chHHHHHHHHHhc---CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 96 TPGHV----------DFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 96 tPG~~----------df~~~~~~~l~~~---D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
|||+. .+......+++.+ +++++|+|+..+.......+++.+...++|+++++||+|+...
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 99964 2333334445444 6888999998877766666677777789999999999998653
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=6.3e-15 Score=146.46 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
+|+++|+.|+|||||+++++... ... . ... + +.......+.+++ ..++||||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~--~-~~~-t-------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEP--K-YRR-T-------------VEEMHRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc--c-CCC-c-------------hhhheeEEEEECCEEEEEEEEECCCchhhh
Confidence 47899999999999999997321 110 0 000 0 0011112233344 678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHH----HhcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~----~~~~ip~ivviNK~D~~~ 155 (711)
.....+++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 8888899999999999999875433322222 222 225799999999999864
No 188
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=1.2e-14 Score=154.55 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~d 101 (711)
-+..|+++|.+|+|||||+++|.... ..+.. .+ ..|.......+.+.+ ..++|+||||+.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~---~~va~-y~--------------fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK---PKIAD-YP--------------FTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC---ccccC-CC--------------CCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 35789999999999999999996221 11111 11 124444555556665 8999999999863
Q ss_pred -------hHHHHHHHHHhcCeEEEEEeCCCC---CC-hhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 102 -------FTLEVERALRVLDGAICLFDSVAG---VE-PQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -------f~~~~~~~l~~~D~~llvvda~~g---~~-~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
+...+.+.+..+|++++|+|++.. .. .+...+.+++.. .+.|+++|+||+|+...
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 344566777889999999999864 11 122223333332 36899999999998643
No 189
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=1.5e-14 Score=139.82 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|.+|+|||||+++++. +...... . ...|.........+......++||||||+..|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDTQL-----------F---HTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCcCc-----------C---CceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 357899999999999999999972 1111000 0 00111211222222223457889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH-------hcCCCeEEEEeccCcC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-------KYGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~-------~~~ip~ivviNK~D~~ 154 (711)
.......++.+|++++|+|.++....+....| ..+. ..++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 98888999999999999999865433322222 2111 2468999999999975
No 190
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.61 E-value=9e-15 Score=140.79 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|.+|+|||||+++++. +..... +.... + ...........+...+++|||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~--------~~~t~------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRES--------YIPTI------E-DTYRQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCC--------cCCcc------h-heEEEEEEECCEEEEEEEEECCCCCcchH
Confidence 4689999999999999999973 211110 00000 0 01111222333457899999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh------cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~------~~ip~ivviNK~D~~~ 155 (711)
....+++.+|++|+|+|.++...... ..++..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 88889999999999999987554332 333343333 4689999999999854
No 191
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=1.7e-14 Score=143.43 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~ 100 (711)
...+|+++|.+|+|||||+++++... ... . +. ...|+.... ..+.+. ...+.||||||+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~--~---------~~---~t~~~~~~~--~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG--S---------YI---TTIGVDFKI--RTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC--C---------cC---ccccceeEE--EEEEECCEEEEEEEEeCCCch
Confidence 46899999999999999999997221 100 0 00 001222222 223333 3578899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
.|...+...++.+|++++|+|+++.-..+.. .++..+.. ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9998889999999999999999875433322 23333322 3589999999999864
No 192
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.61 E-value=1.4e-14 Score=137.31 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|+......... ...+.+..............+++|||||+..|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYK----------------STIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccC----------------CceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 68999999999999999997322211100 00122222222222224578899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHhc---CCCeEEEEeccCcC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRL 154 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~~---~ip~ivviNK~D~~ 154 (711)
....++.+|++++|+|+++...... ..++..+... +.|+++++||+|..
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 9999999999999999987432222 2333344443 58999999999985
No 193
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.61 E-value=1.6e-14 Score=138.97 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=79.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHH
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 106 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~ 106 (711)
|+++|..|+|||||++++...... . ++.+ |+......+.+++..+.+|||||+.+|...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~----~---------~~~p-------t~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL----E---------SVVP-------TTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc----c---------cccc-------cCCcceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 789999999999999999732110 0 0001 1111223456678899999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHH--hcCCCeEEEEeccCcCCcc
Q 005154 107 ERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD--KYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 107 ~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~--~~~ip~ivviNK~D~~~~~ 157 (711)
..+++.+|++|+|+|+++..... .+..+..+. ..++|+++|+||+|+....
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 99999999999999998754222 222333332 2579999999999986543
No 194
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=1.1e-14 Score=156.47 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCC-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV- 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~- 100 (711)
...+|+++|++|+|||||+|+|+. .. ....... +.|.+.....+.+ ++..+.||||||+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~---~~-~~v~~~~--------------~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTG---AD-VYAADQL--------------FATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC---Cc-eeeccCC--------------ccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 358899999999999999999962 11 1111111 2244444445555 56799999999983
Q ss_pred ch-------HHHHHHHHHhcCeEEEEEeCCCCCChhHH----HHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 DF-------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df-------~~~~~~~l~~~D~~llvvda~~g~~~~t~----~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+. ...+...++.+|++++|+|+++....... .++..+...++|+++|+||+|+..
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 21 11233457889999999999976544332 223333334789999999999853
No 195
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.61 E-value=4.3e-15 Score=140.34 Aligned_cols=113 Identities=27% Similarity=0.307 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df 102 (711)
.+|+++|++|+|||||+++|+... . +.+...+++.......+..++ +.+.+|||||+.+|
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F-----------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C-----------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 689999999999999999997221 0 111122445555554455666 78999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
........+.++.++.++|.... ...+...+++.+.. ++|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 77777777777777777776543 22333334444333 8899999999998654
No 196
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.60 E-value=4.5e-15 Score=126.44 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.3
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC---ceeecceeEEeccCceeecCeeecCCEEEEeCCCcccc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 400 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 400 (711)
|.++|||+.++++.|+++|+|||+|+|++||+|++...+ +..++++|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999977653 35789999999999999999999999999999999999
Q ss_pred CccccC
Q 005154 401 GETLCD 406 (711)
Q Consensus 401 Gdtl~~ 406 (711)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999863
No 197
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=1.6e-14 Score=139.43 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||++++..... .. ..++ + -+-.. .....+......+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~--~~~~-t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE--SYDP-T-----------IEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc--ccCC-c-----------chheE-EEEEEECCEEEEEEEEeCCCcccchhh
Confidence 689999999999999999972221 10 0000 0 00010 111112223367899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-----HHHHHHHhcCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-----~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|.++....+.. .+++.....++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999864322222 222222235799999999999854
No 198
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.60 E-value=1.8e-14 Score=139.45 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~ 100 (711)
+..+|+++|++|+|||||+++++. +.... +....+........+.+. .+.+++|||||+.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCA--GRFPE----------------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh--CCCCC----------------ccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 357999999999999999999972 21100 000111222222233333 4689999999999
Q ss_pred chHH-HHHHHHHhcCeEEEEEeCCCCCChhHHHHHH-HHHh----cCCCeEEEEeccCcCC
Q 005154 101 DFTL-EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~-~~~~~l~~~D~~llvvda~~g~~~~t~~~~~-~~~~----~~ip~ivviNK~D~~~ 155 (711)
+|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 9864 4667788999999999999766555544443 3333 3689999999999854
No 199
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=8e-15 Score=162.88 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+|+|+.... .... ...|.|.+.....+.+++..+++|||||+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~---a~v~--------------~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEER---AIVT--------------DIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---cccC--------------CCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 46899999999999999999972211 1111 112445555556677788999999999998754
Q ss_pred HH--------HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 LE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~--------~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.. +...++.+|++++|+|++++........|.. ..++|+++|+||+|+..
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 32 3446788999999999998776665555554 45789999999999864
No 200
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=2.3e-14 Score=137.44 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|.+|+|||||+++++. +..... ..+ +.. ........+......++||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~--~~~--t~~-----------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEK--YDP--TIE-----------DFYRKEIEVDSSPSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC--CCC--chh-----------heEEEEEEECCEEEEEEEEECCCcccccc
Confidence 3799999999999999999973 221110 000 000 01111222222235688999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
.+..+++.+|++++|+|.++...-+. ..++..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 88889999999999999987543222 223333322 4799999999999753
No 201
>PLN03118 Rab family protein; Provisional
Probab=99.60 E-value=2.2e-14 Score=144.09 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...+|+++|++|+|||||+++|+... .... . ...|.+.......+....+.++||||||+.+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~--~~~~---~------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VEDL---A------------PTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC--CCCc---C------------CCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 345789999999999999999997321 1100 0 0112222222222222346789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHH-HH----hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-AD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~-~~----~~~ip~ivviNK~D~~~ 155 (711)
|......+++.+|++|+|+|.++....+.. ..|.. +. ..+.|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999899999999999999999875443333 23332 22 23678999999999864
No 202
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.60 E-value=9e-15 Score=136.96 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC----c
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----D 101 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~----d 101 (711)
+|+++|++|+|||||+++|+... .. . ..|+ ...+.. .+|||||+. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~--~~-------------~-------~~t~-----~~~~~~---~~iDt~G~~~~~~~ 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE--IL-------------Y-------KKTQ-----AVEYND---GAIDTPGEYVENRR 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc--cc-------------c-------ccce-----eEEEcC---eeecCchhhhhhHH
Confidence 79999999999999999996111 00 0 0021 222333 789999973 2
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+...+...++.+|++++|+|++++...+...+... .+.|+++|+||+|+..
T Consensus 52 ~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 52 LYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 33334456789999999999998877665443332 2459999999999854
No 203
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=2.2e-14 Score=144.56 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=80.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+...+|+++|+.|+|||||+++|+...... +.. ..-|++.....+.+......++||||||+.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~~~---~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------ESK---STIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------CCC---CceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3456899999999999999999996221100 000 001222222222222234689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.|.......++.+|++|+|+|.++....+.. .++..+.. .++|+++|.||+|+..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 9998889999999999999999865443333 23333333 4789999999999743
No 204
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.7e-14 Score=156.64 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCc-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~d- 101 (711)
+..|+|+|.+|+|||||+|+|+. ....++. .+ +.|.......+.+.+ ..+.|+||||..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~---~k~~vs~-~p--------------~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSA---AKPKVAD-YP--------------FTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhC---CcccccC-CC--------------CCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 45899999999999999999962 2111111 12 336666666666665 4699999999764
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCC----CCChhHHHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVA----GVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~----g~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
....+.+.+..+|++++|+|++. ....+...+.+++.. .+.|.++|+||+|+..
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 34456778999999999999872 122223344444444 3689999999999864
No 205
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=1.5e-14 Score=142.92 Aligned_cols=115 Identities=20% Similarity=0.158 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++...... +...+ ..+.+.......+......++||||||+..|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~---~~~~~------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN---GNFIA------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---cCcCC------------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 68999999999999999996321110 00000 0011222222222223468999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
....++.+|++|+|+|++...... ...++..+.+ .++|+++|+||+|+..
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 888899999999999998643322 1223333332 3689999999999853
No 206
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.9e-14 Score=153.25 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~d 101 (711)
-+..|+|+|.+|||||||+++|.. +...++. .+ +.|+......+.+ ++..++++||||..+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~---a~~~va~-yp--------------fTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSA---AKPKIAD-YP--------------FTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHc---CCCccCC-CC--------------CceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 357799999999999999999962 2111111 11 2366666667777 457899999999753
Q ss_pred -------hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 102 -------FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -------f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
+...+.+.+..+|++|+|+|+++....+. ..+...+.. .++|+++|+||+|+...
T Consensus 219 ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 219 GASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred CCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 44566777888999999999986432222 233344433 36899999999998643
No 207
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=2.8e-14 Score=134.84 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=81.3
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-CeeEEEEeCCCCCchH----
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT---- 103 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~i~liDtPG~~df~---- 103 (711)
++|++|+|||||+++|+...... . ....+.|.......+.+. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--V---------------SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--c---------------CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 58999999999999996321110 0 011233444444444444 6799999999988764
Q ss_pred ---HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 104 ---LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ---~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
..+...++.+|++++|+|+..........+.......++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34556888999999999999988777766667777789999999999998754
No 208
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=3.4e-14 Score=137.88 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..|+|||||+.+++. +...... .+ +. +.... ....+......++||||||..+|..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~~--~~--t~----------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDYH--DP--TI----------EDAYK-QQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCCc--CC--cc----------cceEE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 5799999999999999999973 2211100 00 00 00111 1112222236789999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHH----hcCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
.+..+++.+|++|+|+|.++....+...- +..+. ..++|+++|+||+|+..
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 89999999999999999997665544332 22222 24789999999999753
No 209
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=2.4e-14 Score=139.75 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe--cCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~i~liDtPG~~df 102 (711)
++|+++|++|+|||||+++++..... ....+ + +.......+.. .++.+++|||||+.+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~----~~~~~-t--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV----ESYYP-T--------------IENTFSKIIRYKGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----cccCc-c--------------hhhhEEEEEEECCEEEEEEEEECCChHhh
Confidence 68999999999999999999732110 10000 0 00000111222 2357899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
......++..+|++++|+|.++....+.. .++..+. ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 88888899999999999999975443332 2233332 24689999999999753
No 210
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=2.5e-14 Score=144.39 Aligned_cols=117 Identities=25% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
....+|+++|..|+|||||+++++. +...... ...-|.++.............+.+|||||+.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~~--------------~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY--------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCcc--------------CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 4467999999999999999999873 2111100 00112233322222222447899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH--hcCCCeEEEEeccCcC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD--KYGVPRICFVNKMDRL 154 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~--~~~ip~ivviNK~D~~ 154 (711)
|...+..+++.+|++|+|+|.++....+...-| ..+. ..++|+++|.||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 988888889999999999999976544433333 2222 2478999999999975
No 211
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.59 E-value=4e-14 Score=139.29 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...+|+++|..++|||||+.++.. +..... + ....|.........+......++||||||+.+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~--~~~~~~-----------~---~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQD--GSTESP-----------Y---GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------C---CCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3568999999999999999999972 211100 0 00012222222222322347889999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
|...+...++.+|++|+|+|.++....... .++..+.+ .++|+++|.||+|+..
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 998888899999999999999875443332 33334432 4789999999999853
No 212
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.59 E-value=5.4e-15 Score=149.57 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=115.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcC-ceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~g-iti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
...+.|+++|++|+|||||++.|+...... .. ....| +++ ...++.+++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~------~~~~g~i~i------~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NI------SDIKGPITV------VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------cc------ccccccEEE------EecCCceEEEEeCCchH
Confidence 345789999999999999999997331110 00 01122 121 12267899999999965
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEE-EEeccCcCCc--cHHHHHHHHHHHhCCcc----
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA--NFFRTRDMIVTNLGAKP---- 173 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~iv-viNK~D~~~~--~~~~~~~~l~~~l~~~~---- 173 (711)
..+...++.+|++++|+|+..+...++..++..+...++|.++ |+||+|+... ...+..+++++.+....
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5677788999999999999999999999999999889999655 9999999643 24556666666443211
Q ss_pred --e------EEEeccCCCCCceeeeecccceEEeecCc
Q 005154 174 --L------VVQLPVGAEDNFKGVVDLVKMKAIIWSGE 203 (711)
Q Consensus 174 --~------~~~~p~~~~~~~~g~vd~~~~~~~~~~~~ 203 (711)
. |+++|..+..+|.+.+++++++++.|.+.
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~ 209 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNS 209 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecC
Confidence 1 34467777788999999999999999764
No 213
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.59 E-value=4.2e-14 Score=142.14 Aligned_cols=109 Identities=18% Similarity=0.118 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++. +.... . ..|+........+..+.+.||||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~--~~f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYME--RRFKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCCCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 689999999999999999972 21110 0 00222222233445678999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
....++.+|++|+|+|.++....... ..|..+.+ .++|+|+|.||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 88899999999999999875433332 23333332 4689999999999865
No 214
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=3.9e-14 Score=139.81 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|+. +..... ... +..+ .. .....+......++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~---~~~-t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVET---YDP-TIED----------SY-RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCcc---CCC-chHh----------hE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 388999999999999999973 221110 000 0000 00 111112122356899999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh------cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~------~~ip~ivviNK~D~~~ 155 (711)
...+++.+|++|+|+|.++...... ..++..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 8999999999999999987543322 233333322 4689999999999853
No 215
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=2.6e-14 Score=157.86 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+|+|+.....+ .+. ..|.|.+.....+.+++..+++|||||+.++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai---vs~--------------~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI---VSD--------------IKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc---cCC--------------CCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 35789999999999999999997322111 111 1245666666777888999999999998765
Q ss_pred HHH--------HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 103 TLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~--------~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
... ...+++.+|++++|+|++.+...... ++..+...++|+++|+||+|+...
T Consensus 265 ~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 265 ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 432 34577889999999999987665544 556666678999999999998643
No 216
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.58 E-value=2.1e-14 Score=139.69 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|..|||||||+++|. .+....... |+......+.++++.+++||.+|+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~~~~p-------------------T~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEISETIP-------------------TIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEEEEEE-------------------ESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hccccccCc-------------------ccccccceeeeCcEEEEEEecccccc
Confidence 557899999999999999999996 232221111 44455566777999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCC-hhHHHHHHHH-H---hcCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQA-D---KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~-~~t~~~~~~~-~---~~~ip~ivviNK~D~~~~ 156 (711)
+...+..++..+|++|+|||+++.-. ......+..+ . ..++|+++++||.|..++
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 98888999999999999999996422 2223233332 2 247899999999998765
No 217
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=3.3e-14 Score=135.35 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~df~ 103 (711)
+|+++|++|+|||||+++|+.... .... .+. +-......+..+ .+.+++||+||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~----~~~~---------~~~------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF----VEEY---------DPT------IEDSYRKTIVVDGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----CcCc---------CCC------hhHeEEEEEEECCEEEEEEEEECCChHHHH
Confidence 589999999999999999973221 0000 000 001111122233 4688999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
......++.+|++++|+|.++.... ....++..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 8889999999999999999764321 12233333322 4799999999999865
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=153.62 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+++|+|.||+|||||+|+|+ +....+.+.-+ |.|.+.-...+..+|+.+.++||+|..+-
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~---~~d~AIVTdI~--------------GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALL---GRDRAIVTDIA--------------GTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHh---cCCceEecCCC--------------CCccceEEEEEEECCEEEEEEecCCcccC
Confidence 35789999999999999999997 33333333333 45888888889999999999999997753
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 103 --------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 103 --------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.......+..||.+++|+|++.+...+....+. +...+.|+++|+||+|+....
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccc
Confidence 222455788899999999999987777766666 566789999999999997653
No 219
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.58 E-value=8.8e-15 Score=124.45 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=73.8
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe-C---CCccc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 399 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~ 399 (711)
|.++|||+.++++.|+++|+|||||+|++||.|++...++++++++|+.+ +.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 57999999999999999999999999999999998887778899999955 6777999999999999995 3 66788
Q ss_pred cCccccC
Q 005154 400 TGETLCD 406 (711)
Q Consensus 400 ~Gdtl~~ 406 (711)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 220
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=8.7e-14 Score=135.42 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeee-EEEEecC--eeEEEEeCCCCCc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~-~~~~~~~--~~i~liDtPG~~d 101 (711)
.+|+++|..|+|||||+.+++. +.... ++.+ |+.... ..+..++ +.++||||||+.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~-----------~~~p-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPS-----------EYVP-------TVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CCCC-------ceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 4789999999999999999973 21110 0000 111111 1222333 6788999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHH-HHHHh--cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~-~~~~~--~~ip~ivviNK~D~~~ 155 (711)
|......+++.+|++|+|+|.++....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 988777889999999999999875443332 223 33332 3689999999999854
No 221
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=3.6e-14 Score=137.42 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+++++.... .. .+.+ .-|.........+.-....+++|||||+.+|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DK-----------NYKA---TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 588999999999999999973211 00 0000 0011222122222222367999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHhc----CCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY----GVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~~----~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|+++...... ..++..+.+. ..|+++|.||+|+..
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 8899999999999999986432222 2333333332 255889999999854
No 222
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.58 E-value=2.9e-14 Score=141.53 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
+|+|+|.+|+|||||+++++. +..... ..+ .++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~--~~f~~~--~~p--------------t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLA--QEFPEE--YIP--------------TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHc--CCCCcc--cCC--------------ccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 689999999999999999973 211110 000 001111111223344 678899999987652
Q ss_pred ----HH----HHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHH------hcCCCeEEEEeccCcCC
Q 005154 104 ----LE----VERALRVLDGAICLFDSVAGVEPQSETV-WRQAD------KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ----~~----~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~------~~~ip~ivviNK~D~~~ 155 (711)
.+ ...+++.+|++|+|+|+++....+.... +..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 11 3456789999999999987544332222 22222 25689999999999854
No 223
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.57 E-value=3.6e-14 Score=141.86 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|.||+|||||+|.++. ..+... + ++-..|.....+.+.-+..++.|.||||...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig--~kv~~v-S--------------~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIG--QKVSAV-S--------------RKVHTTRHRILGIITSGETQLVFYDTPGLVS 132 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhC--Cccccc-c--------------ccccceeeeeeEEEecCceEEEEecCCcccc
Confidence 5678999999999999999999971 111111 1 1112366666677777889999999999542
Q ss_pred ------------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh-cCCCeEEEEeccCcCCc
Q 005154 102 ------------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ------------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~-~~ip~ivviNK~D~~~~ 156 (711)
+......++..+|++++|+|+++.-....-.+++.+.+ .++|-++|+||+|....
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ 200 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh
Confidence 44467789999999999999996333333344555544 36899999999998754
No 224
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.57 E-value=6.1e-14 Score=141.23 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---cCeeEEEEeCCCCCch
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDF 102 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---~~~~i~liDtPG~~df 102 (711)
+|+++|.+|+|||||+++|+..... ..+. ..++.+.....+.+ ....++||||||+..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~-------------~~~~-----~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG-------------KSYK-----QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-------------CCCC-----CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999632110 0000 01111221222333 2468999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh------cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~------~~ip~ivviNK~D~~~ 155 (711)
.......++.+|++|+|+|+++.-..... .++..+.+ .+.|+++|.||+|+..
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 88888899999999999999865333222 23333332 2357889999999853
No 225
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=5.2e-14 Score=153.54 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-CeeEEEEeCCCCCc-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~i~liDtPG~~d- 101 (711)
+..|+++|.+|||||||+++|+... .+++. .+ +.|.......+.+. +..++|+||||...
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak---~kIa~-yp--------------fTTl~PnlG~v~~~~~~~~~laD~PGlieg 219 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK---PKIAN-YH--------------FTTLVPNLGVVETDDGRSFVMADIPGLIEG 219 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC---Ccccc-CC--------------cceeceEEEEEEEeCCceEEEEECCCCccc
Confidence 4589999999999999999996221 11111 11 23566666666666 78999999999753
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCC--CCh--hHHHHHHHHHh-----cCCCeEEEEeccCcC
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAG--VEP--QSETVWRQADK-----YGVPRICFVNKMDRL 154 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g--~~~--~t~~~~~~~~~-----~~ip~ivviNK~D~~ 154 (711)
+.....+.+..+|++|+|+|++.. ..+ ....+...+.. .++|.++|+||+|+.
T Consensus 220 a~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 220 ASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred ccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 234456667789999999999753 122 22233344433 478999999999974
No 226
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.57 E-value=3.6e-14 Score=136.49 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-hHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d-f~~ 104 (711)
+|+++|.+|+|||||+++++. +... +...+ +. . +.......+..+...+++|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~--~~~~~-t~-----~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFI--GEYDP-NL-----E-------SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Cccc--cccCC-Ch-----H-------HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 489999999999999999972 2110 00000 00 0 11112222333445789999999985 455
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHH-----hcCCCeEEEEeccCcC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD-----KYGVPRICFVNKMDRL 154 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~-----~~~ip~ivviNK~D~~ 154 (711)
.....++.+|++|+|+|+++....+... ++..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 6788899999999999998764433222 222222 2379999999999974
No 227
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.57 E-value=2.8e-14 Score=141.47 Aligned_cols=109 Identities=26% Similarity=0.286 Sum_probs=76.0
Q ss_pred EcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHH
Q 005154 30 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 109 (711)
Q Consensus 30 vG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~ 109 (711)
+|..|+|||||+++++. +.... .+.+ .-|++.......+..+...++||||||+.+|...+..+
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~-----------~~~~---Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK-----------KYVA---TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC-----------CCCC---ceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 59999999999999972 21110 0000 01223333322232345789999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCChhHHHHH-HHHHh--cCCCeEEEEeccCcC
Q 005154 110 LRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRL 154 (711)
Q Consensus 110 l~~~D~~llvvda~~g~~~~t~~~~-~~~~~--~~ip~ivviNK~D~~ 154 (711)
++.+|++|+|+|.+.....+....| ..+.+ .++|+++|.||+|+.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999987655444333 33443 578999999999974
No 228
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.57 E-value=5.6e-14 Score=134.82 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-ecCeeEEEEeCCCCCchHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~i~liDtPG~~df~~ 104 (711)
+|+++|.+|+|||||+++|......... . +.+ ..|..+......+. .....+++|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--~---------~~~---t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--N---------YLM---TTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--c---------CCC---ceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 6899999999999999999632111100 0 000 01112222222222 2347899999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
.+...++.+|++++|+|.++...... ..++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 88889999999999999986433222 223333333 3689999999999854
No 229
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=8.4e-14 Score=139.65 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|.+|+|||||+++|+........ . + .-|.+.......+......+++|||||+..|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~-----------~---ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~ 68 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D-----------L---TIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--C-----------C---CccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 4689999999999999999999732111000 0 0 0122222222222223357889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
...+...++.+|++|+|+|++.....+.. .++..+.. .++|+++|.||+|+..
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 98888999999999999999865433332 22222222 4689999999999854
No 230
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=4.6e-14 Score=136.87 Aligned_cols=114 Identities=13% Similarity=0.030 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++++.......... +.. ........+....+.+++|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~------t~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVP------TVF-----------DHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC------cee-----------eeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 689999999999999999973221100000 000 011111222223456889999999999887
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHH--hcCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQAD--KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~--~~~ip~ivviNK~D~~~~ 156 (711)
....++.+|++++|+|..+.-..+.. .+...+. ..++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 77788899999999999875433322 1222232 357999999999998643
No 231
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=6.8e-14 Score=154.40 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d- 101 (711)
-+..|+|+|.+|+|||||+++|.. ....+.. . .+.|+......+.+.+..++|+||||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~---akpkIad-y--------------pfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSA---AKPKIAD-Y--------------PFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhc---CCccccc-c--------------CcccccceEEEEEECCeEEEEEECCCCccc
Confidence 357899999999999999999962 2111111 1 23466777777788889999999999753
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCC---CCh--hHHHHHHHH--------------HhcCCCeEEEEeccCcCC
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAG---VEP--QSETVWRQA--------------DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g---~~~--~t~~~~~~~--------------~~~~ip~ivviNK~D~~~ 155 (711)
...+..+.+..+|++|+|||++.. -.+ ....+...+ ...+.|+|+|+||+|+..
T Consensus 220 as~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 220 ASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred cchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 223456677889999999999742 111 111121122 124689999999999864
No 232
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.55 E-value=4.9e-14 Score=136.66 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=73.1
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-CeeEEEEeCCCCCc------
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD------ 101 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~i~liDtPG~~d------ 101 (711)
++|++|+|||||+++|..... ..+. ..+.|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~---~~~~---------------~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---KVAN---------------YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---cccC---------------CCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 589999999999999962211 1110 1233445545556667 88999999999843
Q ss_pred -hHHHHHHHHHhcCeEEEEEeCCCCC-----Ch--hHHHHHHHHH----------hcCCCeEEEEeccCcCCc
Q 005154 102 -FTLEVERALRVLDGAICLFDSVAGV-----EP--QSETVWRQAD----------KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -f~~~~~~~l~~~D~~llvvda~~g~-----~~--~t~~~~~~~~----------~~~ip~ivviNK~D~~~~ 156 (711)
+...+...++.+|++++|+|+.... .. ....+...+. ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 2234566788899999999998763 21 1112222222 147899999999998653
No 233
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=6.2e-14 Score=135.34 Aligned_cols=115 Identities=15% Similarity=0.032 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++|+...-....... . ................+++|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPT------V-----------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc------e-----------eeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999732210000000 0 0011111222233567999999999988666
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHh--cCCCeEEEEeccCcCCcc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK--YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~--~~ip~ivviNK~D~~~~~ 157 (711)
....++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+...+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 6667789999999999986433222 122333333 359999999999987543
No 234
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=5.4e-14 Score=154.47 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe-eEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~-~i~liDtPG~~df 102 (711)
.+.|+++|.+|+|||||+|+|+ +......+ ..+.|++.....+.+.+. .+.+|||||+...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt---~~~~~v~~---------------~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~ 258 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRIT---EARVYAAD---------------QLFATLDPTLRRIDVADVGETVLADTVGFIRH 258 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHh---CCceeecc---------------CCCCCcCCceEEEEeCCCCeEEEEecCccccc
Confidence 5789999999999999999996 21111100 112344444445555554 8899999998442
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCCChhHH----HHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 --------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 --------~~~~~~~l~~~D~~llvvda~~g~~~~t~----~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+..
T Consensus 259 lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 259 LPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 12234556889999999999986543332 233444445799999999999853
No 235
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.55 E-value=1.1e-13 Score=136.89 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++......... .+ ..|.++......+......+++|||||...|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~------------~~---t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPY------------QN---TIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCc------------cc---ceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 68999999999999999997322110000 00 0111222222222223356789999999988777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
....++.+|++++|+|.++...... ..++..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 7778889999999999987533322 233333333 3689999999999754
No 236
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=1e-13 Score=136.47 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+++++. +.... .+ ....|.+.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~--~~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTE--DEFSE-----------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 689999999999999999972 21110 00 001122222222333223467899999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHh---cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+...++.+|++|+|+|+++.-...... ++..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 999999999999999998643322222 2222322 3578999999999863
No 237
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.3e-13 Score=130.40 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=93.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+.+....|.++|.+|+|||+|+.++...+.......+ -||..+...+.+......+++|||.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT----------------iGIDFk~kti~l~g~~i~lQiWDtaGQ 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST----------------IGIDFKIKTIELDGKKIKLQIWDTAGQ 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccce----------------EEEEEEEEEEEeCCeEEEEEEEEcccc
Confidence 5677899999999999999999999744443322222 266666777777667789999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+.|...+..+++.|+++++|+|.+.........-| +...+ .++|.++|.||+|+..
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999999999976554433333 33332 3789999999999865
No 238
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=1.5e-13 Score=135.01 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeee-EEEEe---cCeeEEEEeCCCCCc
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW---NKHRINIIDTPGHVD 101 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~-~~~~~---~~~~i~liDtPG~~d 101 (711)
+|+++|..|+|||||+++++...-..... .|+.... ..+.. ....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~--------------------~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYV--------------------PTVFENYVTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCC--------------------CeeeeeeEEEEEecCCcEEEEEEEECCCchh
Confidence 68999999999999999997322110000 0111110 01111 235789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHH-HHH--hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWR-QAD--KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~-~~~--~~~ip~ivviNK~D~~~ 155 (711)
|.......++.+|++|+|+|.++....+.. ..|. ... ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 988887888999999999999875433332 2232 222 24789999999999854
No 239
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.54 E-value=1.2e-13 Score=141.47 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+++++. +.... . ... +..| .......+....+.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~--~-y~p-Ti~d-----------~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEE--Q-YTP-TIED-----------FHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCC--C-CCC-ChhH-----------hEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 689999999999999999972 22111 0 000 0001 11112222223478899999999999877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh------------cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~------------~~ip~ivviNK~D~~~ 155 (711)
...++..+|++|+|+|.++....+. ..++..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 7778899999999999986533222 222233321 3689999999999853
No 240
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=1e-13 Score=135.77 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..|+|||||+.+++.... .. ++.+ .-|..+......+......+++|||+|+..|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~~~---T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DYIQ---TLGVNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC---ccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 689999999999999999973211 10 0000 0122222222222223367899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+..+++.+|++++|+|.++....... .++..+.+ ...| ++|+||+|+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 88899999999999999875433332 23333433 2345 68899999853
No 241
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.7e-13 Score=128.67 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
+-+.-.|+++|..++|||||+.++++......-..+ -|+..-+....+.-..++++||||+|++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqAT----------------IGiDFlskt~~l~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT----------------IGIDFLSKTMYLEDRTVRLQLWDTAGQE 82 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccce----------------eeeEEEEEEEEEcCcEEEEEEEecccHH
Confidence 344578999999999999999999976654332222 2566666666666677899999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCC-hhHHHHHHHHHhcC----CCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQADKYG----VPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~-~~t~~~~~~~~~~~----ip~ivviNK~D~~~~ 156 (711)
.|...+..++|.++++|+|+|.++.-. .+|..+++-+++.+ +-+++|.||.|+...
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 999999999999999999999996543 45666666666542 335578899999764
No 242
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=1.1e-13 Score=136.51 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
++|+++|..|+|||||+++++. +..... ..+ +. +... .....+......++||||||+.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~~--~~~--t~----------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQV--YEP--TV----------FENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCc--cCC--cc----------eeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 5799999999999999999972 211100 000 00 0010 11112222346899999999999877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
....+++.+|++|+|+|.++....+.. .++..+.. .++|+++|.||+|+...
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 777788999999999999875444333 23333333 37899999999998654
No 243
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=1.2e-13 Score=138.58 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---cCeeEEEEeCCCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 100 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---~~~~i~liDtPG~~ 100 (711)
..+|+++|.+|+|||||+++|+... ...... ..+..+.....+.. ....+++|||||+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~--~~~~~~----------------~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR--FAEVSD----------------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCCC----------------ceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 3689999999999999999997321 111000 01111111112222 23579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
.|.......++.+|++|+|+|.++....... .++..+.. ...|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred hHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 9988888899999999999999864322221 22232222 3466788999999854
No 244
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=1.1e-13 Score=133.95 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|.+|+|||||+++++. +... .... ..+ -+.........+......+++|||+|...|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~--~~f~-~~~~-~~T-----------~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLG--RSFS-LNAY-SPT-----------IKPRYAVNTVEVYGQEKYLILREVGEDEVA 67 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhC--CCCC-cccC-CCc-----------cCcceEEEEEEECCeEEEEEEEecCCcccc
Confidence 478999999999999999999972 2211 0000 000 011111122222222357889999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH-hcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD-KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~-~~~ip~ivviNK~D~~~ 155 (711)
......+++.+|++|+|+|+++...... ..+++... ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 68 ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 8777888899999999999977532221 13333332 23789999999999853
No 245
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.3e-13 Score=130.11 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+....|.++|..|+|||.|+.++. .+ ++.+. .+..-|+.+......++-+..++++|||+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~--~~------------~f~e~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFK--DD------------TFTES--YISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 69 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhc--cC------------Ccchh--hcceeeeEEEEEEeeecceEEEEEeeeccccH
Confidence 4568899999999999999999994 11 11110 11122555555555555566789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh---cCCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
.|...+..+.|.++++|+|+|.+.--.-.....| ..+.+ .++|.++|.||+|+...
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 9999999999999999999999974443333333 33333 46899999999998654
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.3e-13 Score=153.13 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+||++|+||+|||||+|+| +|.....|+. .|+|+......+.++++.+.++|+||.-++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~L---TG~~q~VgNw---------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~ 64 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNAL---TGANQKVGNW---------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT 64 (653)
T ss_pred cceEEEecCCCccHHHHHHHH---hccCceecCC---------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCC
Confidence 356999999999999999999 5766666653 3789999999999999999999999965431
Q ss_pred -----HH-HHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 104 -----LE-VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 104 -----~~-~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.. +.+++. ..|++|-|+||+. -.....+.-|+.+.++|+++++|++|..
T Consensus 65 ~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 65 AYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 11 333443 4599999999986 2334455567789999999999999964
No 247
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.53 E-value=1.7e-13 Score=133.26 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..|+|||||+.+++. +.... ...+ +..+ .. .....+......+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~--~~~~--t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPG--EYIP--TVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC--cCCC--ccee----------ee-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 4789999999999999999973 21110 0000 0000 00 11112222346788999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH-HHH-HHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~-~~~-~~~~~--~~ip~ivviNK~D~~~ 155 (711)
....+++.+|++|+|+|.++.-..+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888889999999999999875443333 223 32222 3689999999999854
No 248
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.53 E-value=1.9e-13 Score=135.06 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeee---eEEEEecCeeEEEEeCCCCCc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA---ATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~---~~~~~~~~~~i~liDtPG~~d 101 (711)
.+|+++|..|+|||||+.+++... .... +. .|+... ...+..+...+++|||||+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~~-----------~~-------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPKE-----------YI-------PTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCcC-----------CC-------CceEeeeEEEEEECCEEEEEEEEECCCchh
Confidence 579999999999999999997321 1100 00 011111 112222346789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHH-HHH--hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWR-QAD--KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~-~~~--~~~ip~ivviNK~D~~~ 155 (711)
|......+++.+|++|+|+|.++....+... .|. .+. ..++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9988888999999999999998754443332 232 222 24789999999999854
No 249
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.53 E-value=2.8e-13 Score=129.86 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
+|+++|.+|+|||||+++++ .+...... ...+........+..++ ..+++|||||..+|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~--~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT--DNEFHSSH----------------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh--cCCCCCCC----------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH
Confidence 68999999999999999997 22211100 00111111112233333 578899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.....+++.+|++++|+|.++.-..+.. .++..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888899999999999999864332222 22222222 3689999999999754
No 250
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=1.7e-13 Score=133.23 Aligned_cols=114 Identities=15% Similarity=0.064 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..++|||||+.+++. +.... ++.+ .-|.+.. ....+......+++|||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~-----------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCC-----------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 4789999999999999999973 22111 0000 0011111 1122222346889999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
....+++.+|++|+|+|.++.-..+.. .++..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999875554442 33444432 4789999999999854
No 251
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.52 E-value=3.7e-14 Score=122.54 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.0
Q ss_pred eEEEEEEEeecC-CCCeEEEEEEEeeEeCCCCEEEeCC---------CCceeecceeEEeccCceeecCeeecCCEEEEe
Q 005154 324 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 393 (711)
Q Consensus 324 ~~~~V~k~~~~~-~~g~l~~~RV~sG~l~~gd~v~~~~---------~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 393 (711)
++++|||+.+++ +.|+++|+|||||+|++||.|++.. ..+++++.+++.++|.+..++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8899999999999999999998765 334578999999999999999999999999999
Q ss_pred CCCccccCcccc
Q 005154 394 GLKDTITGETLC 405 (711)
Q Consensus 394 gl~~~~~Gdtl~ 405 (711)
|+++++.|+|.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999888888743
No 252
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=139.69 Aligned_cols=135 Identities=22% Similarity=0.268 Sum_probs=97.6
Q ss_pred cchhhhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeE
Q 005154 3 VSIMEKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 82 (711)
Q Consensus 3 l~~~~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~ 82 (711)
|..+.+.|.++...+..+++ .++|.|.|+||+|||||++++. ++...+.+ .+-| |-.....
T Consensus 148 L~fL~~~r~~l~~LP~Idp~-~pTivVaG~PNVGKSSlv~~lT---~AkpEvA~-YPFT--------------TK~i~vG 208 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPD-LPTIVVAGYPNVGKSSLVRKLT---TAKPEVAP-YPFT--------------TKGIHVG 208 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCC-CCeEEEecCCCCcHHHHHHHHh---cCCCccCC-CCcc--------------ccceeEe
Confidence 56788899999999888766 8999999999999999999995 33222211 1111 4556667
Q ss_pred EEEecCeeEEEEeCCCCCch--------HHHHHHHHHhc-CeEEEEEeCCCCC----ChhHHHHHHHHH-hcCCCeEEEE
Q 005154 83 TTYWNKHRINIIDTPGHVDF--------TLEVERALRVL-DGAICLFDSVAGV----EPQSETVWRQAD-KYGVPRICFV 148 (711)
Q Consensus 83 ~~~~~~~~i~liDtPG~~df--------~~~~~~~l~~~-D~~llvvda~~g~----~~~t~~~~~~~~-~~~ip~ivvi 148 (711)
.++++..++++|||||.-|- -.+...|++.. +++++++|+++.- ..|. .+|+..+ ..+.|+++|+
T Consensus 209 hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~~p~v~V~ 287 (346)
T COG1084 209 HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFKAPIVVVI 287 (346)
T ss_pred eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcCCCeEEEE
Confidence 78888889999999998762 33456677655 7888999999532 2232 3344443 3567899999
Q ss_pred eccCcCCcc
Q 005154 149 NKMDRLGAN 157 (711)
Q Consensus 149 NK~D~~~~~ 157 (711)
||+|....+
T Consensus 288 nK~D~~~~e 296 (346)
T COG1084 288 NKIDIADEE 296 (346)
T ss_pred ecccccchh
Confidence 999987543
No 253
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.52 E-value=1.7e-13 Score=132.92 Aligned_cols=112 Identities=14% Similarity=0.040 Sum_probs=72.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHH
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 106 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~ 106 (711)
|+|+|.+|+|||||+++++.... .. .+.+. .+ ........+......+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~-----------~~~~~---~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE-----------DYVPT---VF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCCc---EE-eeeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 57999999999999999973221 10 00000 00 0011111222233568999999999998877
Q ss_pred HHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 107 ERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 107 ~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
...++.+|++|+|+|.++.-..+.. .++..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 7888999999999999864322222 22333332 4799999999999864
No 254
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.52 E-value=1.1e-13 Score=158.27 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=77.8
Q ss_pred cCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH-----
Q 005154 31 AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE----- 105 (711)
Q Consensus 31 G~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~----- 105 (711)
|.+|+|||||+|+|+ |.....++ ..|+|++.....+.++++.+++|||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~v~n---------------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQTVGN---------------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCeecC---------------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 889999999999995 32211111 2477888888888888999999999999887432
Q ss_pred HHH-HH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 106 VER-AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~-~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+.+ .+ ..+|++++|+|+++. ........++.+.++|+++|+||+|+..
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 222 22 368999999999873 2234445566678999999999999753
No 255
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.51 E-value=1.9e-13 Score=132.75 Aligned_cols=114 Identities=15% Similarity=0.003 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
++|+++|+.|+|||||+++++.......... +. +... .....+..+...+.+|||||+.+|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~------t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP------TV----------FENY-VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC------cc----------ccce-EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 6899999999999999999973211100000 00 0011 11112222345789999999998877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH-H-HHHHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE-T-VWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~-~-~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
.....++.+|++++|+|.......... . +...+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 666788899999999999854222221 2 2222332 4789999999999864
No 256
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.51 E-value=2.6e-13 Score=131.69 Aligned_cols=113 Identities=16% Similarity=0.058 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+++++|.+|+|||||+.+++...-.. .+.+. +.........+......+++|||||+..|...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~-------------~~~~t----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPT-------------EYVPT----AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-------------CCCCc----eeeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 58999999999999999996321100 00000 00111111222223367889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
...+++.+|++|+|+|.++.-..+. ..++..+.. .++|+++++||+|+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 7778899999999999987543332 233444433 4689999999999854
No 257
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.50 E-value=1e-13 Score=119.91 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=69.5
Q ss_pred eEEEEEEEeecCCC-CeEEEEEEEeeEeCCCCEEEeCCCC---------ceeecceeEEeccCceeecCeeecCCEEEEe
Q 005154 324 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALA 393 (711)
Q Consensus 324 ~~~~V~k~~~~~~~-g~l~~~RV~sG~l~~gd~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 393 (711)
++++|||+.++|+. ++++|+|||||+|++||.|++...+ ..++|++|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 6799999999999999999863211 3578999999999999999999999999999
Q ss_pred CCCccccCcc
Q 005154 394 GLKDTITGET 403 (711)
Q Consensus 394 gl~~~~~Gdt 403 (711)
|+++..++.+
T Consensus 81 gl~~~~~~~~ 90 (94)
T cd04090 81 GIDSSIVKTA 90 (94)
T ss_pred CcchheeceE
Confidence 9998655443
No 258
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.50 E-value=6e-13 Score=130.21 Aligned_cols=116 Identities=13% Similarity=0.028 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|..++|||||+.+++.... .. ++.+. -+... .....+......+.||||+|...|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~-----------~~~pT---~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYVPT---VFENY-TASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CC-----------ccCCc---eeeee-EEEEEECCEEEEEEEEECCCchhh
Confidence 356899999999999999999973221 10 00000 00011 111222223467999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHH-HHHHh--cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~-~~~~~--~~ip~ivviNK~D~~~ 155 (711)
......+++.+|++|+|+|.++....+.. ..| ..+.+ .+.|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 88888889999999999999876544442 233 33333 3689999999999843
No 259
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.49 E-value=8e-13 Score=126.59 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=74.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch----
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---- 102 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df---- 102 (711)
|+++|++|+|||||++.|+..... ... .+ ..+.|..... +.+. ..+++|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~----~~-----------~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ART----SK-----------TPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eee----cC-----------CCCcceeEEE--EEcc-CeEEEecCCCccccccCH
Confidence 789999999999999999621111 100 00 1122332222 2222 38999999998653
Q ss_pred ------HHHHHHHHH---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 103 ------TLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ------~~~~~~~l~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...+..++. .++++++++|...........+.+.+...+.|+++++||+|...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222333333 45789999999887777777777888888999999999999854
No 260
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=6.3e-13 Score=129.68 Aligned_cols=114 Identities=12% Similarity=0.004 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..|+|||||+++++.... .. ++.+. -+... .....+......+++|||||+..|..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~t---~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PE-----------TYVPT---VFENY-TASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CC-----------CcCCc---eEEEE-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 4699999999999999999973211 00 00000 00011 11122222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhH-H-HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQS-E-TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t-~-~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
....+++.+|++|+|+|.++...... . .+...+.+ .+.|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 78888999999999999987654443 2 33333333 4789999999999853
No 261
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=3.1e-13 Score=124.08 Aligned_cols=97 Identities=23% Similarity=0.175 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC----CC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 100 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG----~~ 100 (711)
++|.++|.+++|||||+++|........ .|. .+.+ .=++||||| +.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----------------------KTq-----~i~~---~~~~IDTPGEyiE~~ 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----------------------KTQ-----AIEY---YDNTIDTPGEYIENP 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----------------------ccc-----eeEe---cccEEECChhheeCH
Confidence 5789999999999999999951111000 011 1111 225699999 44
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.|..........+|.+++|.|+++.....-- ..+...+.|+|-|+||+|+.
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 5666777777899999999999975432221 23445678999999999998
No 262
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=3.4e-13 Score=125.83 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=76.8
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHH
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 108 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~ 108 (711)
++|++|+|||||+++|+.......... .+ ..............+..+++|||||+.++......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~-----~t-----------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYE-----TT-----------IIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccc-----cc-----------hhheeeEEEEECCEEEEEEEEecCChHHHHhHHHH
Confidence 589999999999999973222100000 00 00111111111123678999999999999888888
Q ss_pred HHHhcCeEEEEEeCCCCCChhHHHHH-----HHHHhcCCCeEEEEeccCcCCcc
Q 005154 109 ALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~~~~t~~~~-----~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.++.+|++++|+|+..+........+ ......++|+++|+||+|+....
T Consensus 65 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 65 YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 99999999999999986655544433 33345689999999999986543
No 263
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.5e-13 Score=126.00 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...|+++|..++|||||+-++.. +..... .|..-|...-...+.+.-...++-+|||+|++.|.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk--~~F~e~--------------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVK--DQFHEN--------------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhh--Cccccc--------------cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 46899999999999999999962 221110 12222333333333333345788899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHhcCCC---eEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKYGVP---RICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~~ip---~ivviNK~D~~~ 155 (711)
+-...++|.++++|+|+|.++.-.-+.. .++..+.+..-| +.+|.||+|+..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999999999976554443 334444443223 345899999875
No 264
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=1.2e-12 Score=132.31 Aligned_cols=115 Identities=13% Similarity=0.000 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...|+++|..++|||||+.+++.... .. ++.+ .-|.... ....+.-....++||||+|...|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~-----------~y~p---Ti~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PE-----------TYVP---TVFENYT-AGLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CC-----------CcCC---ceeeeeE-EEEEECCEEEEEEEEeCCCchhhH
Confidence 46899999999999999999973211 10 0000 0010111 111222234689999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-H-HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-E-TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~-~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
.....+++.+|++|+|+|.++....+. . .++..+.. .+.|+++|.||+|+..
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888889999999999999987654443 2 23333432 3689999999999753
No 265
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.46 E-value=1e-12 Score=132.82 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|.+|+|||||+++++ .+...... + +...+.........+......+++|||||+.++..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~--~~~~~~~~----------~---~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~- 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDHA----------Y---DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE- 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCcCccC----------c---CCCccccceEEEEEECCEEEEEEEEeCCCcchHHH-
Confidence 68999999999999999996 22211000 0 00001011122223333457899999999984432
Q ss_pred HHHHHH-hcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 106 VERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~-~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
...++ .+|++++|+|+++...... ..++..+.. .++|+++|.||+|+..
T Consensus 66 -~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 -DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred -hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 34556 8999999999987533221 233333333 4689999999999854
No 266
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.46 E-value=2e-12 Score=117.99 Aligned_cols=112 Identities=24% Similarity=0.281 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
-.+|.|+|..||||||++++|+ +.... .+. -|......++.++++.+++||..|+..+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~---~~~~~--~i~----------------pt~gf~Iktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLL---GEDTD--TIS----------------PTLGFQIKTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhc---CCCcc--ccC----------------CccceeeEEEEecceEEEEEEcCCcchhH
Confidence 3567899999999999999995 22111 010 14555556677899999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHH----HHHhcCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWR----QADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~----~~~~~~ip~ivviNK~D~~~~ 156 (711)
.-+..++..+|+.|+|||.++...-| +...+. .-+-.|.|++++.||.|..++
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 99999999999999999998654322 222222 223468899999999998754
No 267
>COG2262 HflX GTPases [General function prediction only]
Probab=99.45 E-value=8.6e-13 Score=138.48 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=90.5
Q ss_pred cchhhhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeE
Q 005154 3 VSIMEKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 82 (711)
Q Consensus 3 l~~~~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~ 82 (711)
|..++++|...+..... ..++.|+++|.+|||||||+|+|+ +..... . | +.-.|.+...-
T Consensus 173 Le~v~~~R~~~R~~R~~--~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~~---~------d------~LFATLdpttR 232 (411)
T COG2262 173 LENVEKAREPRRKKRSR--SGIPLVALVGYTNAGKSTLFNALT---GADVYV---A------D------QLFATLDPTTR 232 (411)
T ss_pred HHHHHHHHHHHhhhhcc--cCCCeEEEEeeccccHHHHHHHHh---ccCeec---c------c------cccccccCcee
Confidence 44566666666664442 458999999999999999999995 321111 0 0 11125666666
Q ss_pred EEEec-CeeEEEEeCCCCCch--------HHHHHHHHHhcCeEEEEEeCCCCCC-hhHHHHHHHHH---hcCCCeEEEEe
Q 005154 83 TTYWN-KHRINIIDTPGHVDF--------TLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQAD---KYGVPRICFVN 149 (711)
Q Consensus 83 ~~~~~-~~~i~liDtPG~~df--------~~~~~~~l~~~D~~llvvda~~g~~-~~t~~~~~~~~---~~~ip~ivviN 149 (711)
.+.+. +..+.|-||-|+++- ...+......+|.+++|||+++.-- .+...+.+.+. ...+|+|+|.|
T Consensus 233 ~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~N 312 (411)
T COG2262 233 RIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLN 312 (411)
T ss_pred EEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 66665 689999999998852 2234455667899999999998632 23333333333 35689999999
Q ss_pred ccCcCCc
Q 005154 150 KMDRLGA 156 (711)
Q Consensus 150 K~D~~~~ 156 (711)
|+|+...
T Consensus 313 KiD~~~~ 319 (411)
T COG2262 313 KIDLLED 319 (411)
T ss_pred cccccCc
Confidence 9998654
No 268
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=9.3e-13 Score=118.96 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc----
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 101 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d---- 101 (711)
.|+++|.+|+|||||+|+|+... ....+. ..+.|.......+.+++..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccchh
Confidence 48999999999999999997211 111111 123355554455667889999999999864
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEec
Q 005154 102 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 150 (711)
Q Consensus 102 -----f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK 150 (711)
....+...+..+|++++|+|+..........+++.+. .+.|+++|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2334566667889999999988855555667777776 88999999998
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=128.62 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=86.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.++..||.++|.+|+|||||+|+|+ .|.......+..|+... .. ....+++..++||||||..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF--~~~~~~v~~vg~~t~~~---~~------------~~~~~~~~~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALF--QGEVKEVSKVGVGTDIT---TR------------LRLSYDGENLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHH--hccCceeeecccCCCch---hh------------HHhhccccceEEecCCCcc
Confidence 4556899999999999999999998 33333333232222110 00 0112356789999999998
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 101 D-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 d-------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
| +.......+...|.+++++|+.+......+..++.... .+.++++++|.+|+..
T Consensus 99 dg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred cchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 7 56667788889999999999999888878888877654 4578999999999864
No 270
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.45 E-value=8.7e-13 Score=131.45 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE----ecCeeEEEEeCCCCC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----WNKHRINIIDTPGHV 100 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~----~~~~~i~liDtPG~~ 100 (711)
++|+++|++|+|||||+++|..... .. . +. ++......+. ..+..+.+||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~~--t------~~-----------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--RS--T------VT-----------SIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--CC--c------cC-----------cEeecceEEEeecCCCCceEEEEECCCCH
Confidence 4799999999999999999973211 00 0 00 0111111111 246789999999999
Q ss_pred chHHHHHHHHHhc-CeEEEEEeCCCCCCh--hHHHHHHH----HH--hcCCCeEEEEeccCcCCcc
Q 005154 101 DFTLEVERALRVL-DGAICLFDSVAGVEP--QSETVWRQ----AD--KYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 101 df~~~~~~~l~~~-D~~llvvda~~g~~~--~t~~~~~~----~~--~~~ip~ivviNK~D~~~~~ 157 (711)
+|.......++.+ +++|+|+|+...... .+.+.+.. .. ..++|+++++||+|+..+.
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 9999999999999 999999999875321 12222211 11 2489999999999998754
No 271
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=3.5e-12 Score=128.41 Aligned_cols=117 Identities=22% Similarity=0.181 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|+.|+|||||+++++ .+....... ..-|..+.........+...+++|||||+.+|
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~--~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHL--TGEFEKKYI--------------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHH--hCCCCCCCC--------------CccceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 35789999999999999998876 232111000 00122222222222334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH--hcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD--KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~--~~~ip~ivviNK~D~~~ 155 (711)
.......++.+|++++|+|.++....+....| ..+. ..++|+++++||+|+..
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 87778888899999999999876554443333 2221 24789999999999753
No 272
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.43 E-value=3e-12 Score=128.88 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..|+|||||+.+++.... .. ++.+. -+.... ....+......++||||+|+..|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~-----------~y~pT---i~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PG-----------SYVPT---VFENYT-ASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------ccCCc---cccceE-EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 5789999999999999999973211 10 00000 000111 1112222346788999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHH-HH--hcCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-AD--KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~-~~--~~~ip~ivviNK~D~~~ 155 (711)
....+++.+|++|+|+|.++....+.. ..|.. .. ..++|+++|.||+|+..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 888899999999999999876433332 33432 22 24789999999999854
No 273
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.42 E-value=4.2e-12 Score=121.35 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=69.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCchH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 103 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~df~ 103 (711)
+|+++|..|+|||||+.+++. +..... ..+. .+ .. . ..+..++ ..+.+|||+|..+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~--~~f~~~-----------~~~~---~~-~~-~--~~i~~~~~~~~l~i~D~~g~~~~- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLT--GSYVQL-----------ESPE---GG-RF-K--KEVLVDGQSHLLLIRDEGGAPDA- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHh--CCCCCC-----------CCCC---cc-ce-E--EEEEECCEEEEEEEEECCCCCch-
Confidence 689999999999999999873 211100 0000 01 11 1 1223334 67899999999762
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRL 154 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~ 154 (711)
...+.+|++++|+|.++.-..+. ..++..+.. .++|+++|.||+|+.
T Consensus 61 ----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 ----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred ----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 45678999999999997665554 344444433 357999999999974
No 274
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.42 E-value=2.8e-12 Score=130.39 Aligned_cols=133 Identities=16% Similarity=0.229 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc----
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 101 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d---- 101 (711)
+|+++|.+|+|||||+++|+ +.....+. . .+.|.......+.+++..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~~-~--------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAA-Y--------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCccccC-C--------------CCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 58999999999999999996 32211111 1 12355555566777889999999999864
Q ss_pred ---hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC-----Ce-----------EEEEeccCcCCccHHHHH
Q 005154 102 ---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PR-----------ICFVNKMDRLGANFFRTR 162 (711)
Q Consensus 102 ---f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i-----p~-----------ivviNK~D~~~~~~~~~~ 162 (711)
+..++...++.+|++++|+|+++... +...+.+.+...|+ |. +-+.++.|+...+. +.+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~-~~v 141 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDE-KTI 141 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCH-HHH
Confidence 23456778999999999999986432 44455566655444 11 22334666665553 445
Q ss_pred HHHHHHhCCcceEEEe
Q 005154 163 DMIVTNLGAKPLVVQL 178 (711)
Q Consensus 163 ~~l~~~l~~~~~~~~~ 178 (711)
..+.+.+++....+.+
T Consensus 142 ~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 142 KAILREYKIHNADVLI 157 (233)
T ss_pred HHHHHHhCeeeEEEEE
Confidence 5566667766555543
No 275
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=117.02 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=89.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.-...|.++|.+|+|||+|+-+++..+....... .-|+..+.....+..+..++.+|||+|++.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~----------------tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPT----------------TIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCc----------------eeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 3468899999999999999999973332111111 126677777777777889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHH-HHh----cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~-~~~----~~ip~ivviNK~D~~~ 155 (711)
|...+..+.|.+.++|+|.|.+.........+|.. +.. .++-.++|.||+|+..
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 99999999999999999999987655544455533 222 3455578999999764
No 276
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=129.34 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCee-EEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~-i~liDtPG~~ 100 (711)
+-+.+|+++|.||||||||+++|. .+-.++++. .+ .|+........+.++. +++-|.||.+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als---~AKpkVa~Y---aF------------TTL~P~iG~v~yddf~q~tVADiPGiI 255 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALS---RAKPKVAHY---AF------------TTLRPHIGTVNYDDFSQITVADIPGII 255 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhh---ccCCccccc---ce------------eeeccccceeeccccceeEeccCcccc
Confidence 346789999999999999999995 333333321 11 2667777777776665 9999999976
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCCCC--C--hhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 101 D-------FTLEVERALRVLDGAICLFDSVAGV--E--PQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 d-------f~~~~~~~l~~~D~~llvvda~~g~--~--~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
. .-....+-+..|+..++|+|.+.+. . .|...++..+.. ...|.++|+||+|.+.+
T Consensus 256 ~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 256 EGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 4 2334566777889999999999762 2 223344444433 36789999999998643
No 277
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.8e-12 Score=118.02 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
....+.++|..|+|||.|+-+++..... ++.+ -.-|+......+++.-+..++++|||.||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~-----~~hd-----------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQ-----PVHD-----------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcc-----cccc-----------ceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 3578899999999999999999632221 1111 01133334444455556679999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHHh---cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
.+.+..+++.+-++|||.|.+..-.-..... +.-++. .++.++++.||+|+...
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 9999999999999999999986444333333 333443 46667788999998654
No 278
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=7.4e-12 Score=111.82 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
-...+.|+|...+|||||+-+.+..+....-..+ -||..+...+.-.-+..++++|||.|++.+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsT----------------vGidFKvKTvyr~~kRiklQiwDTagqEry 83 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST----------------VGIDFKVKTVYRSDKRIKLQIWDTAGQERY 83 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeee----------------eeeeEEEeEeeecccEEEEEEEecccchhh
Confidence 3468999999999999999998643333222222 255555554433335678999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH---hcCCCeEEEEeccCcCCcc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~---~~~ip~ivviNK~D~~~~~ 157 (711)
...+..++|.+++.|++.|.+..-.-....-| -+++ ..+.|+|+|.||||+...+
T Consensus 84 rtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 84 RTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 99999999999999999999864433322222 2222 3589999999999997654
No 279
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.38 E-value=7.8e-12 Score=119.61 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|..++|||||++++..... .. ++.+ ..|.........+......+.+||++|+..|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--PE-----------NYIP---TIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--TS-----------SSET---TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--cc-----------cccc---cccccccccccccccccccccccccccccccccc
Confidence 589999999999999999973221 11 0000 1122333333333334567999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
....++.+|++|+|+|.++.-.-... .+...+.. .+.|++++.||.|+..
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 88889999999999999864333322 22233222 2578899999999764
No 280
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=119.93 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|.|+|.+|+|||||++++.+..-.......+ |.......+.+.-+...+++|||+|++.|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI----------------gadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI----------------GADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc----------------chhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 36789999999999999999997433211100000 11222222333334467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCC-----hhHHHHHHHHHh---cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVE-----PQSETVWRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~-----~~t~~~~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
...-....|.+|++++|.|....-. .+..+.+.++.. ..-|.||+.||+|..+.
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 9988889999999999999985443 444444455432 35689999999998763
No 281
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.38 E-value=1e-11 Score=122.22 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|..|+|||||++++.. +....... .+..+ ... ....+......+++|||||+.+|..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~~~----~t~~~----------~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEEYH----PTVFE----------NYV-TDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcccC----Ccccc----------eEE-EEEEECCEEEEEEEEECCCChhccc
Confidence 5799999999999999999962 21111000 00000 000 1111111234688999999988765
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 105 EVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 105 ~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
.....++.+|++++++|.+..-..+.. .++..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 555567899999999999754332222 22333322 3689999999999853
No 282
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=1e-11 Score=123.25 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH-
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~- 103 (711)
+||+++|.+|+|||||+|+|+........ ....+.|.........+.+..+++|||||..++.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK----------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc----------------cCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 58999999999999999999732221100 0123557666777777889999999999988752
Q ss_pred ------HHHHHHH----HhcCeEEEEEeCCCCCChhHHHHHHHHHhc-C----CCeEEEEeccCcCCc
Q 005154 104 ------LEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ------~~~~~~l----~~~D~~llvvda~~g~~~~t~~~~~~~~~~-~----ip~ivviNK~D~~~~ 156 (711)
.++.+.+ ...|++|+|+|+.. ........++.+.+. + .++++++||.|....
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 2233333 34699999999987 776777777766553 2 578899999997653
No 283
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.36 E-value=1.3e-11 Score=122.04 Aligned_cols=67 Identities=21% Similarity=0.156 Sum_probs=48.5
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHH-HHHHh--cCCCeEEEEeccCcCC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~-~~~~~--~~ip~ivviNK~D~~~ 155 (711)
....++||||+|+.+. ....+++.+|++|+|+|.++....... ..| ..+.. .++|+++|.||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 3478999999999763 234467899999999999876544433 223 33333 3689999999999854
No 284
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5e-12 Score=118.77 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++-.+|.++|--+|||||++..|- .+.+... .| |+....-.+.+++..+++||..|+..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk--~~E~vtt------------vP-------TiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLK--LGEIVTT------------VP-------TIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeec--cCCcccC------------CC-------ccccceeEEEEcceEEEEEecCCCcc
Confidence 445789999999999999999883 2222111 11 77778888889999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCC--ChhHHHHHHHHHh---cCCCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~--~~~t~~~~~~~~~---~~ip~ivviNK~D~~~~~ 157 (711)
+..-+..+.+..+++|+|||+++.. ...-.++.+.+.. .+.|++++.||.|.+++-
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 9999999999999999999998643 2222333444433 378999999999998753
No 285
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.33 E-value=2.5e-11 Score=120.41 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCchH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFT 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~df~ 103 (711)
.+|+++|.+|+|||||+|+|+.... ...+.. ..+.. ..|.... .+.. ....+.+|||||..+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~--~~~~~~-----~~~~~------~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH--EEEGAA-----PTGVV------ETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC--CCCCcc-----ccCcc------ccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 4799999999999999999973111 001111 11100 0111111 1111 13478999999986532
Q ss_pred HHHHH-----HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 LEVER-----ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~-----~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..... .+..+|++++|.| ..+......+++.+.+.+.|+++|+||+|+..
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 22222 2456788888754 34566667777888888999999999999854
No 286
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.32 E-value=9.4e-12 Score=111.27 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=82.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...+.++|--++|||||+|.+. +|... -|. +-|+......+...+..+.+||.||+..|.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia--~g~~~-----------edm-------iptvGfnmrk~tkgnvtiklwD~gGq~rfr 79 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIA--RGQYL-----------EDM-------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 79 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEe--eccch-----------hhh-------cccccceeEEeccCceEEEEEecCCCccHH
Confidence 3567899999999999999884 22111 111 113333334444567899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCC--ChhHHHHHHHHH---hcCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGV--EPQSETVWRQAD---KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~--~~~t~~~~~~~~---~~~ip~ivviNK~D~~~~ 156 (711)
..+.++.+.+|++++|||+.+.- .....++...+. -.++|+++..||.|+.++
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 99999999999999999999732 222233333333 358999999999999876
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=124.92 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df- 102 (711)
.-+|+++|.|++|||||+++|+ +..+..++. + -.|...-+..+++++..|+++|+||...=
T Consensus 63 da~v~lVGfPsvGKStLL~~LT---nt~seva~y-~--------------FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLT---NTKSEVADY-P--------------FTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHh---CCCcccccc-C--------------ceecccccceEeecCceEEEEcCcccccCc
Confidence 4789999999999999999994 544443331 1 12677778889999999999999996641
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC-----CeEEEEeccCcCCcc----------HHHH
Q 005154 103 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLGAN----------FFRT 161 (711)
Q Consensus 103 ------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i-----p~ivviNK~D~~~~~----------~~~~ 161 (711)
-.++...+|.||.+++|+|+.+.... ...+.+.+...|+ |.-+.+.|-++-+.+ -.+.
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ 203 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDT 203 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHH
Confidence 35588899999999999999875543 3345555655443 445555555543321 1345
Q ss_pred HHHHHHHhCCcceEEEe
Q 005154 162 RDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~~ 178 (711)
+..+.+.++++.+.+.+
T Consensus 204 ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 204 VRAILREYRIHNADVLI 220 (365)
T ss_pred HHHHHHHhCcccceEEE
Confidence 66666777877766655
No 288
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.7e-11 Score=117.08 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=90.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
..+....|+++|.+++|||-|+.++..+........+ -|+.+......+.-+-.+.+||||+|+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT----------------IGvef~t~t~~vd~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST----------------IGVEFATRTVNVDGKTVKAQIWDTAGQ 73 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccc----------------eeEEEEeeceeecCcEEEEeeecccch
Confidence 3456789999999999999999999633222222111 245555555555556678999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+.|...+..+.+.+-++++|.|.+.....+. ..++++++. .++++++|.||+|+..
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 9999999999999999999999987655543 345566665 3788899999999865
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.30 E-value=7.5e-12 Score=120.28 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=68.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---cCeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---~~~~i~liDtPG~ 99 (711)
+.++|.|+|+.|+|||+|+..|.+. ..... + + ++ .....+.. .+..+.+||+|||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~--~~~~T--~------t-----------S~-e~n~~~~~~~~~~~~~~lvD~PGH 59 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG--KTVPT--V------T-----------SM-ENNIAYNVNNSKGKKLRLVDIPGH 59 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS--S---B----------------------S-SEEEECCGSSTCGTCECEEEETT-
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CcCCe--e------c-----------cc-cCCceEEeecCCCCEEEEEECCCc
Confidence 4678999999999999999999843 11110 0 0 11 11111111 3468999999999
Q ss_pred CchHHHHHHH---HHhcCeEEEEEeCCCCCChhHHHHHHHHH---------hcCCCeEEEEeccCcCCccH
Q 005154 100 VDFTLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQAD---------KYGVPRICFVNKMDRLGANF 158 (711)
Q Consensus 100 ~df~~~~~~~---l~~~D~~llvvda~~g~~~~t~~~~~~~~---------~~~ip~ivviNK~D~~~~~~ 158 (711)
.......... +..+.++|+|||++. ...+.+.+.+.+. ..++|++|+.||.|...+..
T Consensus 60 ~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 60 PRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9988777765 889999999999974 2222222222221 35788999999999988763
No 290
>PLN00023 GTP-binding protein; Provisional
Probab=99.30 E-value=3e-11 Score=125.77 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=81.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-----------
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------- 86 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~----------- 86 (711)
..++....+|+++|..|+|||||+++++...-.... ...-|.++....+.+..
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~----------------~pTIG~d~~ik~I~~~~~~~~~~~ik~d 78 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARP----------------PQTIGCTVGVKHITYGSPGSSSNSIKGD 78 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCccccc----------------CCceeeeEEEEEEEECCccccccccccc
Confidence 344555688999999999999999999722110000 00112233222222211
Q ss_pred --cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHhc---------------CCCeEEEE
Q 005154 87 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---------------GVPRICFV 148 (711)
Q Consensus 87 --~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~---------------~ip~ivvi 148 (711)
..+.++||||+|+..|...+...++.+|++|+|+|.+..-..... .++..+... ++|++||.
T Consensus 79 ~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVG 158 (334)
T PLN00023 79 SERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIG 158 (334)
T ss_pred CCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEE
Confidence 236799999999999999889999999999999999874333222 333333332 47899999
Q ss_pred eccCcCC
Q 005154 149 NKMDRLG 155 (711)
Q Consensus 149 NK~D~~~ 155 (711)
||+|+..
T Consensus 159 NK~DL~~ 165 (334)
T PLN00023 159 NKADIAP 165 (334)
T ss_pred ECccccc
Confidence 9999865
No 291
>PRK09866 hypothetical protein; Provisional
Probab=99.30 E-value=6.4e-11 Score=131.24 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.3
Q ss_pred CeeEEEEeCCCCCc-----hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcC--CCeEEEEeccCcCC
Q 005154 88 KHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~d-----f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~--ip~ivviNK~D~~~ 155 (711)
...+.|+||||... +...+..++..+|.+++|+|+..+.....+.+.+.+.+.+ .|+++|+||+|+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 36899999999753 3456778999999999999999888888888888888777 49999999999853
No 292
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.29 E-value=4.8e-11 Score=118.43 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-----ecCeeEEEEeCCCCC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPGHV 100 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-----~~~~~i~liDtPG~~ 100 (711)
+|+++|..++|||||+++++......... ..-|.++......+. -..+.++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~----------------~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPS----------------WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 68999999999999999997321110000 001222222222221 123679999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh----------------------cCCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----------------------YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~----------------------~~ip~ivviNK~D~~~~ 156 (711)
+|.......++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9988888899999999999999976544433333 23322 36899999999998653
No 293
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.9e-11 Score=106.66 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+-...+.++|+.|.|||.|+.+++.+.-...... .-|+...+..+.+..+..++++|||+|++.
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssH----------------TiGveFgSrIinVGgK~vKLQIWDTAGQEr 70 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSH----------------TIGVEFGSRIVNVGGKTVKLQIWDTAGQER 70 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccc----------------eeeeeecceeeeecCcEEEEEEeecccHHH
Confidence 4468899999999999999999984432211111 125555566666666778999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHhc---CCCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~~---~ip~ivviNK~D~~~~~ 157 (711)
|..-+..+.+.+-++++|.|++.........-| .-++.+ ++-++++.||-|+...+
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 999999999999999999999875554444333 333433 45566778999987543
No 294
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.26 E-value=2e-11 Score=109.15 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++....+|+|.+|+|||+|+-++...+..-+.+.+ -|+......+.++....+++||||+|++.
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitT----------------iGvDfkirTv~i~G~~VkLqIwDtAGqEr 69 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITT----------------IGVDFKIRTVDINGDRVKLQIWDTAGQER 69 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEE----------------eeeeEEEEEeecCCcEEEEEEeecccHHH
Confidence 34566789999999999999988533221111111 14555555556655667999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
|...+..+.+...++++|.|.+.|-....- .+++.++. -.+|-++|.||.|.++-
T Consensus 70 Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 70 FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 999999999999999999999987654433 33344332 25788999999998764
No 295
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=8.5e-11 Score=122.42 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|++|+|||||+|+|+...-. ...+... .......+.+++......+..++ ..+++|||||+.|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~-~~~~~~~-------~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLI-PSDYPPD-------PAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCc-cccCCCC-------ccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 469999999999999999999732111 1101000 01111223334555555555555 4799999999877
Q ss_pred hHHH---------------------HHHHHH-------hcCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 102 FTLE---------------------VERALR-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 102 f~~~---------------------~~~~l~-------~~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
+... .....+ .+|+++++++++ .++.......++.+.. ++|+++|+||+|
T Consensus 76 ~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D 154 (276)
T cd01850 76 NINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKAD 154 (276)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCC
Confidence 5321 111112 368899999987 4777887888888775 799999999999
Q ss_pred cCCcc-HHHHHHHHHHHh
Q 005154 153 RLGAN-FFRTRDMIVTNL 169 (711)
Q Consensus 153 ~~~~~-~~~~~~~l~~~l 169 (711)
+...+ .....+.+++.+
T Consensus 155 ~l~~~e~~~~k~~i~~~l 172 (276)
T cd01850 155 TLTPEELKEFKQRIMEDI 172 (276)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 96532 334444454444
No 296
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.25 E-value=1.3e-11 Score=111.67 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+|+|..|+|||||+++|+..... +....+...+.++.............+.+||++|+..+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 4889999999999999999833322 00011111233444444444344456999999999988776
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHH---HHHHHh--cCCCeEEEEeccC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETV---WRQADK--YGVPRICFVNKMD 152 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~---~~~~~~--~~ip~ivviNK~D 152 (711)
....+..+|++++|+|.++.-..+. ..+ +..... .++|+++|.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6667999999999999987542222 222 222222 4699999999998
No 297
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=1.4e-10 Score=119.49 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred CeeEEEEeCCCCCchH---HH---HHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHH-----hcCCCeEEEEeccCcC
Q 005154 88 KHRINIIDTPGHVDFT---LE---VERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRL 154 (711)
Q Consensus 88 ~~~i~liDtPG~~df~---~~---~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~-----~~~ip~ivviNK~D~~ 154 (711)
+..+.+|||||+.++. .. ..+.+.. ++++++|+|+..+...........+. ..++|+++|+||+|..
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 4579999999987642 22 2333333 79999999998877666544433322 5789999999999997
Q ss_pred Ccc
Q 005154 155 GAN 157 (711)
Q Consensus 155 ~~~ 157 (711)
..+
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 654
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=1.6e-10 Score=122.18 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=82.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCc------cccchhhh---hhcCceeeeeeEE-----
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA------TMDWMEQE---QERGITITSAATT----- 83 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~------~~d~~~~e---~~~giti~~~~~~----- 83 (711)
..+...|+|.|.+|+|||||++.|.... |.....-..++.+. ..|....+ ...+..+.+....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 3456899999999999999999986433 22122223344332 22443333 1123233332211
Q ss_pred -----------EEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 84 -----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 84 -----------~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
+...++.+.||||+|... .++. ....+|.+++|++...|..-|.... ....+.-++|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhc
Confidence 112478999999999884 2222 5778999999987655544443221 112223489999999
Q ss_pred cCCcc-HHHHHHHHHHHh
Q 005154 153 RLGAN-FFRTRDMIVTNL 169 (711)
Q Consensus 153 ~~~~~-~~~~~~~l~~~l 169 (711)
+.... ..+...+++..+
T Consensus 206 l~~~~~a~~~~~el~~~L 223 (332)
T PRK09435 206 GDNKTAARRAAAEYRSAL 223 (332)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 87643 333444444433
No 299
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.2e-10 Score=124.19 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+.-.+|+|+|.||+|||||+|+|...... ..+.. .|.|.++-.+.++.+|+++.|+||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drs---IVSpv--------------~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRS---IVSPV--------------PGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCce---EeCCC--------------CCcchhhheeEeecCCeEEEEEecccccc
Confidence 44589999999999999999999633322 22222 35588888888999999999999999775
Q ss_pred ---------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEecc
Q 005154 102 ---------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 102 ---------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~ 151 (711)
=.......+..+|.+++|+|+.++...+...+.+.+...+.-+.+.+||+
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 13335567888999999999988877777777777766555444444444
No 300
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-10 Score=103.41 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+-...|+++|..|+|||.|+.++. .|. .++|... .-|+......+.+.....++++|||+|++.
T Consensus 5 kflfkivlvgnagvgktclvrrft--qgl------fppgqga--------tigvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QGL------FPPGQGA--------TIGVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--ccC------CCCCCCc--------eeeeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 346789999999999999999996 222 2222200 013333344444544567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHhc---CCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~---~ip~ivviNK~D~~~~ 156 (711)
|.+.+..+.+.++++|+|.|.+........ ++++.+..+ ++-.|+|.||+|+...
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 999999999999999999999854433222 334444332 3445789999998653
No 301
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.19 E-value=2.4e-10 Score=112.93 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=82.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee---eecC-------CC-----ccccchhhhhh------cCceee
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---EVHE-------GT-----ATMDWMEQEQE------RGITIT 78 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~---~~~~-------g~-----~~~d~~~~e~~------~giti~ 78 (711)
..++...|.++|-.|+||||++.+|....++..... ..++ +. .+.++.+..++ .||.-.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 345677899999999999999999975544322211 1111 10 12233333333 234322
Q ss_pred eeeEEEEe-----------cCeeEEEEeCCCCCch-----H-HHHHHHHHhc--CeEEEEEeCCCCCChhH-----HHHH
Q 005154 79 SAATTTYW-----------NKHRINIIDTPGHVDF-----T-LEVERALRVL--DGAICLFDSVAGVEPQS-----ETVW 134 (711)
Q Consensus 79 ~~~~~~~~-----------~~~~i~liDtPG~~df-----~-~~~~~~l~~~--D~~llvvda~~g~~~~t-----~~~~ 134 (711)
.+.....+ ....+.||||||++.. + .....++..+ -+++.|+|....-.+.| ....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 22211111 3467999999998862 1 1122233332 56678888865444433 3345
Q ss_pred HHHHhcCCCeEEEEeccCcCCccH
Q 005154 135 RQADKYGVPRICFVNKMDRLGANF 158 (711)
Q Consensus 135 ~~~~~~~ip~ivviNK~D~~~~~~ 158 (711)
..+.+.++|.|++.||+|..+.++
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHHHhccCCeEEEEecccccccHH
Confidence 666788999999999999988663
No 302
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.15 E-value=4.9e-10 Score=114.91 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCc-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~d- 101 (711)
+-.|+++|-||+|||||++++. .+..+++. .+-| |+..+...+.. .+..+.+-|.||.+.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS---~AkPKIad-YpFT--------------TL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVS---AAKPKIAD-YPFT--------------TLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ecccccccCCCCcHHHHHHHHh---hcCCcccC-Cccc--------------cccCcccEEEecCCCcEEEecCcccccc
Confidence 3568999999999999999995 33333332 1112 44444444443 456799999999764
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCC----ChhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g~----~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
.-.+..+-+..+-+.++|||.+..- ...-..+...+.+ .+.|.++|+||||....
T Consensus 221 As~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 221 ASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred cccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 2233456667788999999998432 2223344445544 37899999999996544
No 303
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.12 E-value=1e-10 Score=116.92 Aligned_cols=137 Identities=25% Similarity=0.248 Sum_probs=81.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc---CCcc------eeeeecCCCccccchhh---hhhcCceeeeeeEEEEe---
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNY------KIGEVHEGTATMDWMEQ---EQERGITITSAATTTYW--- 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~------~~~~~~~g~~~~d~~~~---e~~~giti~~~~~~~~~--- 86 (711)
.+...|+|.|.||+|||||+++|.... |... +......|....|.... ....|+.|.+....-..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 457899999999999999999997432 3221 12222334556666543 34567777766554322
Q ss_pred -------------cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 87 -------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 87 -------------~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
-++.+.||.|-|... .+ ......+|.+++|+-+..|..-|..+. --+.+.-++|+||.|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE-~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ--SE-VDIADMADTVVLVLVPGLGDEIQAIKA----GIMEIADIFVVNKADR 179 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST--HH-HHHHTTSSEEEEEEESSTCCCCCTB-T----THHHH-SEEEEE--SH
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc--cH-HHHHHhcCeEEEEecCCCccHHHHHhh----hhhhhccEEEEeCCCh
Confidence 479999999999765 23 234678899999999998877665321 1122356999999997
Q ss_pred CCccHHHHHHHHHH
Q 005154 154 LGANFFRTRDMIVT 167 (711)
Q Consensus 154 ~~~~~~~~~~~l~~ 167 (711)
.+++ ++..+++.
T Consensus 180 ~gA~--~~~~~l~~ 191 (266)
T PF03308_consen 180 PGAD--RTVRDLRS 191 (266)
T ss_dssp HHHH--HHHHHHHH
T ss_pred HHHH--HHHHHHHH
Confidence 6654 34444444
No 304
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.8e-10 Score=106.37 Aligned_cols=119 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh-cCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY-TGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~-~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
--+|.|+|.-+||||||++++=.. ++. .+..+ +.+ --.|+.....+....+..+.+||..|+...
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~---~~~l~---------~~k--i~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKA---YGGLN---------PSK--ITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhh---hcCCC---------HHH--eecccceeecceeeccceeEEEEcCChHHH
Confidence 467899999999999999998311 110 00000 000 112566666677777889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCC-----hhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVE-----PQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~-----~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+.+..+...+++++++||+++.-. .+.+.+..+-...|+|+++.+||-|+.++
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999997321 22234444445579999999999998764
No 305
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.4e-09 Score=96.80 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
-..|..+|-.++||||++-.|. .+......+ |+.-+.-.+.+++..+|+||..|+....
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLk--l~~~~~~ip-------------------TvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLK--LGQSVTTIP-------------------TVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cceEEEEecccCCceehhhHHh--cCCCccccc-------------------ccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 3567789999999999999996 222111100 3444445567789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCC--ChhHHHHHHHH---HhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGV--EPQSETVWRQA---DKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGA 171 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~--~~~t~~~~~~~---~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~ 171 (711)
.-+.++...+.++|||+|+.+.- +....++.+.+ .....+++|..||-|++.+. ..+++++.|+.
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~leL 145 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLEL 145 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhcc
Confidence 99999999999999999998652 22222333322 22467888899999998865 34455554443
No 306
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.11 E-value=1.7e-09 Score=114.44 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=29.1
Q ss_pred CeeEEEEeCCCCC----chH---HHHHHHHHhcCeEEEEEeCCC
Q 005154 88 KHRINIIDTPGHV----DFT---LEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 88 ~~~i~liDtPG~~----df~---~~~~~~l~~~D~~llvvda~~ 124 (711)
...+++|||||.. .+. ......++.+|++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3579999999973 333 345667999999999999974
No 307
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=8.5e-11 Score=106.31 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...|+++|.-=+|||||+-+.+.....-....+.. .++......++-....+++|||+|++.|.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQ----------------ASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQ----------------ASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHH----------------HHHhhcccccccceeeeeeeeccchHhhh
Confidence 57889999999999999999874332211111110 01122222233344578999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh---cCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
..-.-+.+.+|++++|+|.++....|-..-| ..++. ..+-.+||.||+|+...
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 8777889999999999999987766655443 33333 34567889999998643
No 308
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.7e-10 Score=107.40 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
+.|.++|..|+|||+|+-.|.+ |... +++ .++..+.+.+..++....|||.|||.....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~--gs~~--~Tv-----------------tSiepn~a~~r~gs~~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLIT--GSHR--GTV-----------------TSIEPNEATYRLGSENVTLVDLPGHSRLRR 97 (238)
T ss_pred CcEEEEecCCCCceeeeeehhc--CCcc--Cee-----------------eeeccceeeEeecCcceEEEeCCCcHHHHH
Confidence 6789999999999999999973 2111 111 155666677777788899999999999888
Q ss_pred HHHHHHH---hcCeEEEEEeCCCCCCh---hHHHHHHHH-----HhcCCCeEEEEeccCcCCccHHHHHH
Q 005154 105 EVERALR---VLDGAICLFDSVAGVEP---QSETVWRQA-----DKYGVPRICFVNKMDRLGANFFRTRD 163 (711)
Q Consensus 105 ~~~~~l~---~~D~~llvvda~~g~~~---~t~~~~~~~-----~~~~ip~ivviNK~D~~~~~~~~~~~ 163 (711)
.....+. .+-++|||||+..-... ..+.+...+ ...++|++++.||.|+..+...+.++
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 8888777 78999999999853222 122222222 24567889999999999887544433
No 309
>PTZ00099 rab6; Provisional
Probab=99.07 E-value=1.1e-09 Score=106.52 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=52.9
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+...++||||||+..|...+..+++.+|++|+|+|.+.....+.. .++..+.. .++|+++|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 457899999999999999899999999999999999875433322 23333322 3578899999999853
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.06 E-value=2e-09 Score=107.62 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=73.0
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCc--cccchhhhhhcCceee-eeeE-----------
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA--TMDWMEQEQERGITIT-SAAT----------- 82 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~--~~d~~~~e~~~giti~-~~~~----------- 82 (711)
...+...+++|+++|+.|+|||||+++++...+...+.+-+. +.. ..|....+ +.|..+. ....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~-~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~ 92 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIE-GDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVA 92 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEE-CCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHH
Confidence 334455699999999999999999999997654322222221 211 22333222 2232111 0000
Q ss_pred ----EEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 83 ----TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 83 ----~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+...+..+.||+|.|...... ......+..+.|+|+..+...+. +.....+.|.++++||+|+..
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 0001245889999999321111 11123466678899986654322 122334578899999999865
No 311
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.5e-10 Score=100.97 Aligned_cols=114 Identities=23% Similarity=0.192 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++-.++.++|-.|+||||+.-++- .|++... --|+.-+...+.+++-++++||..|+..
T Consensus 16 e~e~rililgldGaGkttIlyrlq--------vgevvtt-------------kPtigfnve~v~yKNLk~~vwdLggqtS 74 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQ--------VGEVVTT-------------KPTIGFNVETVPYKNLKFQVWDLGGQTS 74 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcc--------cCccccc-------------CCCCCcCccccccccccceeeEccCccc
Confidence 345678899999999999887773 2222110 0155556666777999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCC--hhHHHHHHHHHh---cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVE--PQSETVWRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~--~~t~~~~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
...-+..+....|.+|+|||.++... ....++...+.+ .+...++|.||+|...+
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 99999999999999999999986432 222233333322 34567788999998654
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.01 E-value=2.5e-09 Score=108.20 Aligned_cols=140 Identities=22% Similarity=0.227 Sum_probs=89.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHh---cCCcceeeeec------CCCccccchhhh---hhcCceeeeeeEEEEe--
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVH------EGTATMDWMEQE---QERGITITSAATTTYW-- 86 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~---~g~~~~~~~~~------~g~~~~d~~~~e---~~~giti~~~~~~~~~-- 86 (711)
..+...|+|.|.||+|||||++.|... .|.....-.+| .|+...|..... ...|+.+.+....-..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 345679999999999999999999633 33322222222 344455655433 2345656555443222
Q ss_pred --------------cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 87 --------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 87 --------------~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
-++.+.||.|-|...- + ......+|.+++|.=+..|.+.|.... --+.+--|+|+||+|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQs--e-v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQS--E-VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcc--h-hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccC
Confidence 4789999999986652 2 234567899999998888877776432 223345599999999
Q ss_pred cCCccHHHHHHHHHHHh
Q 005154 153 RLGANFFRTRDMIVTNL 169 (711)
Q Consensus 153 ~~~~~~~~~~~~l~~~l 169 (711)
+.+++ ....+++..|
T Consensus 201 ~~~A~--~a~r~l~~al 215 (323)
T COG1703 201 RKGAE--KAARELRSAL 215 (323)
T ss_pred hhhHH--HHHHHHHHHH
Confidence 77654 3344444433
No 313
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.01 E-value=2.1e-09 Score=108.37 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE---e-cCeeEEEEeCCCCC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---W-NKHRINIIDTPGHV 100 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~---~-~~~~i~liDtPG~~ 100 (711)
..|+++|..|+|||||+++|......... ..|+........ . ....+.+|||+|+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY--------------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC--------------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 78999999999999999999732221100 012111111111 1 14579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCC--CCChhHHHHHHHHHhc---CCCeEEEEeccCcCCcc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGAN 157 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~--g~~~~t~~~~~~~~~~---~ip~ivviNK~D~~~~~ 157 (711)
+|...+..+.+.++++++++|... .....++.+...+... +.|+++|.||+|+....
T Consensus 66 ~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 999999999999999999999985 3334445555555543 48999999999998754
No 314
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.00 E-value=3e-10 Score=93.69 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.6
Q ss_pred CeEEEEEEEeeEeCCCCEEEe--CCCCce---eecceeEEeccCceeecCeeecCCEEEEeCCCc-cccCcccc
Q 005154 338 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 405 (711)
Q Consensus 338 g~l~~~RV~sG~l~~gd~v~~--~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdtl~ 405 (711)
|+++++||+||+|++||+|++ ..+++. .+|++|+.+++...++++.+.||+++.+.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 689999999999999999999 555455 899999999999999999999999999999999 79999986
No 315
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=116.06 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=87.9
Q ss_pred ccchhhhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeee
Q 005154 2 AVSIMEKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 81 (711)
Q Consensus 2 ~l~~~~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~ 81 (711)
+|.+++.+|+++...+..++. .|+++++|.+|+|||||++.+... ...+.+..++ |-..-.
T Consensus 147 sl~yLeqVrqhl~rlPsIDp~-trTlllcG~PNVGKSSf~~~vtra------dvevqpYaFT------------TksL~v 207 (620)
T KOG1490|consen 147 SLEYLEQVRQHLSRLPAIDPN-TRTLLVCGYPNVGKSSFNNKVTRA------DDEVQPYAFT------------TKLLLV 207 (620)
T ss_pred hHHHHHHHHHHHhcCCCCCCC-cCeEEEecCCCCCcHhhccccccc------ccccCCcccc------------cchhhh
Confidence 578899999999998887655 899999999999999999988511 1112221111 222222
Q ss_pred EEEEecCeeEEEEeCCCCCchHHH--------HHHHHHhc-CeEEEEEeCCCC--CC--hhHHHHHHHHH--hcCCCeEE
Q 005154 82 TTTYWNKHRINIIDTPGHVDFTLE--------VERALRVL-DGAICLFDSVAG--VE--PQSETVWRQAD--KYGVPRIC 146 (711)
Q Consensus 82 ~~~~~~~~~i~liDtPG~~df~~~--------~~~~l~~~-D~~llvvda~~g--~~--~~t~~~~~~~~--~~~ip~iv 146 (711)
..+.++-..|+++||||..|-..+ .+.++... -+|+++.|.++- -. .|. .++..++ =.+.|.|+
T Consensus 208 GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~Il 286 (620)
T KOG1490|consen 208 GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTIL 286 (620)
T ss_pred hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEE
Confidence 344555568999999998763222 33444444 567888888742 22 222 2222222 24889999
Q ss_pred EEeccCcCCc
Q 005154 147 FVNKMDRLGA 156 (711)
Q Consensus 147 viNK~D~~~~ 156 (711)
|+||+|....
T Consensus 287 vlNK~D~m~~ 296 (620)
T KOG1490|consen 287 VLNKIDAMRP 296 (620)
T ss_pred EeecccccCc
Confidence 9999998764
No 316
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.00 E-value=4.3e-09 Score=107.03 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCc---ceeeeecCCCccccchh------------hhhhcC------ceeeeee--EEEE
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRN---YKIGEVHEGTATMDWME------------QEQERG------ITITSAA--TTTY 85 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~---~~~~~~~~g~~~~d~~~------------~e~~~g------iti~~~~--~~~~ 85 (711)
|+|++|+||||++.++....... ......|++....++.+ ...+.| ++..... ..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999997544333 22345566654332211 111111 0000000 0001
Q ss_pred e-------cCeeEEEEeCCCCCchHHHHHHH------H--HhcCeEEEEEeCCCCCChhHH-----HHHHHHHhcCCCeE
Q 005154 86 W-------NKHRINIIDTPGHVDFTLEVERA------L--RVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRI 145 (711)
Q Consensus 86 ~-------~~~~i~liDtPG~~df~~~~~~~------l--~~~D~~llvvda~~g~~~~t~-----~~~~~~~~~~ip~i 145 (711)
| ....+.|+||||+.++..-.... + ...=++++++|+..-..+... ..+....+.++|.+
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 12379999999999864432222 2 233578999999854443321 11222345799999
Q ss_pred EEEeccCcCCcc
Q 005154 146 CFVNKMDRLGAN 157 (711)
Q Consensus 146 vviNK~D~~~~~ 157 (711)
.|+||+|+....
T Consensus 161 nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 NVLSKIDLLSKY 172 (238)
T ss_dssp EEE--GGGS-HH
T ss_pred EeeeccCcccch
Confidence 999999998754
No 317
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.3e-09 Score=98.75 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe---------cCeeEEEEe
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINIID 95 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------~~~~i~liD 95 (711)
..+..+|.+|+||||++-+.........-+.++ ||......+-+.- ....++|||
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV----------------GIDFreKrvvY~s~gp~g~gr~~rihLQlWD 73 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV----------------GIDFREKRVVYNSSGPGGGGRGQRIHLQLWD 73 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEe----------------ecccccceEEEeccCCCCCCcceEEEEeeec
Confidence 445678999999999988775211111111111 2222222221111 124688999
Q ss_pred CCCCCchHHHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 96 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 96 tPG~~df~~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|+|++.|.+.+....+.+-+.++++|.+..-.- .++.++.++.. .+--++++.||+|+...
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 999999999999999999999999999864332 34455555543 34456788999998754
No 318
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.98 E-value=9.8e-09 Score=105.08 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
....+|+++|.+|+|||||+|+|+..... ..+.. .+.|.........+++..+++|||||..+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~~~---------------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKA--ATSAF---------------QSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccCCC---------------CCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 44689999999999999999999732211 11110 12244444555667889999999999987
Q ss_pred hHH--H--------HHHHHH--hcCeEEEEEeCCC-CCChhHHHHHHHHHh-cC----CCeEEEEeccCcCCc
Q 005154 102 FTL--E--------VERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~--~--------~~~~l~--~~D~~llvvda~~-g~~~~t~~~~~~~~~-~~----ip~ivviNK~D~~~~ 156 (711)
... . +.+++. ..|++++|..... ........+++.+.. .+ .++++|+||+|....
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 621 1 122222 3466666654432 233333344444432 22 357778888887543
No 319
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=93.21 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchh--hhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~--~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
..+.++|.+-+|||+|+..++ .|...... +-+--.|+.. .|.+.|. ..+++||||+|++.|
T Consensus 9 frlivigdstvgkssll~~ft--~gkfaels---dptvgvdffarlie~~pg~------------riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFT--EGKFAELS---DPTVGVDFFARLIELRPGY------------RIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHh--cCcccccC---CCccchHHHHHHHhcCCCc------------EEEEEEeeccchHHH
Confidence 456789999999999999986 33322211 1122234432 2333332 357899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh----cCCC-eEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVP-RICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~----~~ip-~ivviNK~D~~~~ 156 (711)
...+..+.+++-++++|.|.++.-.-...+.| ..+.. ...+ .++|..|+|+...
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 99999999999999999999975544433333 22221 1222 3568899998754
No 320
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.96 E-value=8.4e-09 Score=109.14 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcC---ceeeeee-----EEEEe---cCeeEE
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG---ITITSAA-----TTTYW---NKHRIN 92 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~g---iti~~~~-----~~~~~---~~~~i~ 92 (711)
...|+++|++++|||||++++....- +....+.....+..|-.+.. ..| .|....+ +.+.. -..++.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 57899999999999999999974411 00011000001111111111 113 1222222 11111 136899
Q ss_pred EEeCCCCCc-------------------------hHHH----HHHHHH-hcCeEEEEE-eCC------CCCChhHHHHHH
Q 005154 93 IIDTPGHVD-------------------------FTLE----VERALR-VLDGAICLF-DSV------AGVEPQSETVWR 135 (711)
Q Consensus 93 liDtPG~~d-------------------------f~~~----~~~~l~-~~D~~llvv-da~------~g~~~~t~~~~~ 135 (711)
||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....+.+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999774 1111 555677 889999999 886 455566778889
Q ss_pred HHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEE
Q 005154 136 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 176 (711)
Q Consensus 136 ~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~ 176 (711)
.+++.++|+++++||.|-...+..+..+++.++++...+++
T Consensus 175 eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 99999999999999999554445556677888888654444
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.93 E-value=1.2e-08 Score=103.26 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc------CCcce-eeee---c-----------CCCccccchhhh------hh---
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT------GRNYK-IGEV---H-----------EGTATMDWMEQE------QE--- 72 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~------g~~~~-~~~~---~-----------~g~~~~d~~~~e------~~--- 72 (711)
..+.|+++|+.++||||++++|.... |...+ +..+ . .+....|+.... .+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 46889999999999999999997431 11110 0000 0 011122222111 11
Q ss_pred -cCceeeeeeEEEEe---cCeeEEEEeCCCCCch-------------HHHHHHHHHh-cCeEEEEEeCCCCCChhH-HHH
Q 005154 73 -RGITITSAATTTYW---NKHRINIIDTPGHVDF-------------TLEVERALRV-LDGAICLFDSVAGVEPQS-ETV 133 (711)
Q Consensus 73 -~giti~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~-~D~~llvvda~~g~~~~t-~~~ 133 (711)
.+-.+......++. .-..++||||||..+. ...+..+++. .+.+++|+|+..++..+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 11122233333333 2358999999998631 2235667774 469999999998888876 577
Q ss_pred HHHHHhcCCCeEEEEeccCcCCcc
Q 005154 134 WRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 134 ~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.+.+...+.|.++|+||+|.....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCcc
Confidence 888888999999999999987643
No 322
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.93 E-value=7.3e-09 Score=102.13 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|..|+|||+|+-+++..... .++.+. .+ +.......+.-..+.+.++||+|..+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-------------~~y~pt-ie---d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-------------EDYDPT-IE---DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-------------cccCCC-cc---ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 468999999999999999999732211 111110 00 1122222333345678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHH----HhcCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~----~~~~ip~ivviNK~D~~~~ 156 (711)
..-..+++..|+.++|++.++...-+.. .++.++ ....+|+++|.||+|+...
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 9999999999999999999875443322 233333 2346899999999998753
No 323
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.91 E-value=7.6e-09 Score=92.21 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~ 100 (711)
.+-..|.++|--|+|||||+..|- +... ...-+..|.. ...+.+.+ ..+|+||..|+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~---sED~--------------~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLK---SEDP--------------RHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHc---cCCh--------------hhccccCCcc----eEEEeecCcEEEEEEecCCcc
Confidence 455678999999999999999993 2111 1111122332 23344444 899999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCC--hhHHHH---HHHHHhcCCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVE--PQSETV---WRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~--~~t~~~---~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
....-+..++...|++|+|+|+++.-. ...++. ++..+...+|++++.||-|+..+
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 999999999999999999999875321 222222 23333457899999999998764
No 324
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=109.84 Aligned_cols=82 Identities=23% Similarity=0.275 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-------------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 85 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~------------------- 85 (711)
.+|+|+|.+|+|||||+|+|+... ...+.. +++ |+........
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~---~~~~~y-~f~--------------t~~p~~g~~~v~~~~~~~r~~~~~~~~~~ 63 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD---VEIANY-PFT--------------TIDPNVGVAYVRVECPCKELGVKCNPRNG 63 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc---ccccCC-CCc--------------ceeeeeeeeeeccCCchhhhhhhhccccc
Confidence 479999999999999999996321 111111 111 1111111100
Q ss_pred -----ecCeeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 005154 86 -----WNKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 86 -----~~~~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~~ 124 (711)
+....++++||||..+ ........++.+|++++|||+..
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1225689999999643 33356677999999999999973
No 325
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.1e-08 Score=89.03 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=82.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
...-+..-.|+|.-|+|||.|+..+.......+-+.. -|+......+.+.....++++|||+|+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcpht----------------igvefgtriievsgqkiklqiwdtagq 70 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT----------------IGVEFGTRIIEVSGQKIKLQIWDTAGQ 70 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcc----------------cceecceeEEEecCcEEEEEEeecccH
Confidence 3455788899999999999999999744332221111 122333333344445678999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHhc---CCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~~---~ip~ivviNK~D~~~~ 156 (711)
+.|..-+..+.+.+-+++.|.|.+.........-| .-++.. +.-++++.||.|+...
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence 99999999999999999999999865444333333 223322 3345667899998653
No 326
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.88 E-value=3.8e-08 Score=104.15 Aligned_cols=130 Identities=21% Similarity=0.168 Sum_probs=73.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCc------cccchhhh---hhcCceeeeeeEE-----
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA------TMDWMEQE---QERGITITSAATT----- 83 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~------~~d~~~~e---~~~giti~~~~~~----- 83 (711)
..+...|+|+|.+|+|||||++.|.... |.....-..++... ..|..... ...+..+.+....
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 3557899999999999999999987532 21111111222111 11111100 1122222222211
Q ss_pred -----------EEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 84 -----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 84 -----------~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
+...++.+.||||||... .....+..+|.++++.+...+..-+. ... .-.++|.++|+||+|
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~--~~~--~l~~~~~ivv~NK~D 183 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQG--IKA--GLMEIADIYVVNKAD 183 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHH--HHH--HHhhhccEEEEEccc
Confidence 122578999999999763 22346778899998866543322111 111 124688899999999
Q ss_pred cCCcc
Q 005154 153 RLGAN 157 (711)
Q Consensus 153 ~~~~~ 157 (711)
+....
T Consensus 184 l~~~~ 188 (300)
T TIGR00750 184 GEGAT 188 (300)
T ss_pred ccchh
Confidence 87643
No 327
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=6.4e-10 Score=116.38 Aligned_cols=130 Identities=33% Similarity=0.358 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCccee---------eeecCC----CccccchhhhhhcCceeeeeeEEEEecCe
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---------GEVHEG----TATMDWMEQEQERGITITSAATTTYWNKH 89 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~---------~~~~~g----~~~~d~~~~e~~~giti~~~~~~~~~~~~ 89 (711)
..+||+++||.++||||+.. +..|.++.. .....| .+.+|+...|++||+++......+....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred cccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 46899999999999999887 323433321 011112 37889999999999998888888887889
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC-------CCChhHHHHHHHHHhcCCCe-EEEEeccCcCC
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 155 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~-------g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~ 155 (711)
.++++|.|||.||..++......+|+++++|.+.- ....|++++...+..+++.. ++.+||||...
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 99999999999999999999999999999999842 24689999999999998665 45699999765
No 328
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.86 E-value=8.6e-09 Score=90.26 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC----CC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 100 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG----~~ 100 (711)
.+++++|.+|+|||||+++|. |.. +.....-.++|++. ..||||| |.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~---G~~------------------------~lykKTQAve~~d~--~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY---GND------------------------TLYKKTQAVEFNDK--GDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhh---cch------------------------hhhcccceeeccCc--cccCCchhhhhhh
Confidence 478999999999999999995 211 00011111222211 2589999 33
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+.......+..+|.+++|-.+.++.+.-.- ..+.-...|+|-+++|+|+..
T Consensus 53 ~~Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 53 RWYHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred HHHHHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEecccccc
Confidence 3444455566778999999999876432211 122334567888999999973
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=6.3e-08 Score=100.87 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=109.4
Q ss_pred ccchhhhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeee
Q 005154 2 AVSIMEKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 81 (711)
Q Consensus 2 ~l~~~~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~ 81 (711)
+++.+..+|......... ..||.++|..|.|||||+|.|+...-. +.....+..+.-...++.+....
T Consensus 5 gi~~l~~~r~~~~~k~Gi----~f~im~~G~sG~GKttfiNtL~~~~l~--------~~~~~~~~~~~~~~~~~~i~~~~ 72 (373)
T COG5019 5 GISNLPNQRHRKLSKKGI----DFTIMVVGESGLGKTTFINTLFGTSLV--------DETEIDDIRAEGTSPTLEIKITK 72 (373)
T ss_pred CcCcchHHHHHHHHhcCC----ceEEEEecCCCCchhHHHHhhhHhhcc--------CCCCccCcccccCCcceEEEeee
Confidence 455666676666555544 589999999999999999999844111 11111111111134555666666
Q ss_pred EEEEecCe--eEEEEeCCCCCchHHH--------------HHHHHH--------------hcCeEEEEEeCC-CCCChhH
Q 005154 82 TTTYWNKH--RINIIDTPGHVDFTLE--------------VERALR--------------VLDGAICLFDSV-AGVEPQS 130 (711)
Q Consensus 82 ~~~~~~~~--~i~liDtPG~~df~~~--------------~~~~l~--------------~~D~~llvvda~-~g~~~~t 130 (711)
..+.-++. .+++|||||+.||... ...++. ..++||+.+-++ +|+.+..
T Consensus 73 ~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D 152 (373)
T COG5019 73 AELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD 152 (373)
T ss_pred eeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH
Confidence 66665554 6889999999986332 111221 247888888876 8899998
Q ss_pred HHHHHHHHhcCCCeEEEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEecc
Q 005154 131 ETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 131 ~~~~~~~~~~~ip~ivviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
.+.++.+.+ .+.+|-||-|.|....+ +....+.+++.+...-+++.-|.
T Consensus 153 Ie~Mk~ls~-~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~py 202 (373)
T COG5019 153 IEAMKRLSK-RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPY 202 (373)
T ss_pred HHHHHHHhc-ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCC
Confidence 888877665 37889999999998754 55566666666655555555564
No 330
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=2.3e-09 Score=94.29 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=76.2
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHH
Q 005154 29 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 108 (711)
Q Consensus 29 ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~ 108 (711)
++|.++.|||.|+-++- .|+. -.|++.. .-||......+.+.-...++++|||+|++.|.+-+..
T Consensus 2 llgds~~gktcllir~k--dgaf------l~~~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--DGAF------LAGNFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec--cCce------ecCceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999998875542 2221 1111111 0144444444444446678999999999999999999
Q ss_pred HHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCCc
Q 005154 109 ALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
+.+.+|..+++.|......... +.++.++.+ ..+...++.||+|+...
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE 118 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh
Confidence 9999999999999986544332 333344443 34567789999998653
No 331
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4e-08 Score=105.45 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...|+++|++|.|||||+.+|+.. ++.+.-.+....||+.+. +..+++|+.|| .| .
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr---------------~tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~D-l 124 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRR---------------FTKQTIDEIRGPITVVSG------KTRRITFLECP--SD-L 124 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHH---------------HHHhhhhccCCceEEeec------ceeEEEEEeCh--HH-H
Confidence 467889999999999999999722 222233344445676655 55799999999 33 4
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEE-EEeccCcCCccHHHHHHHHHHHh
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNL 169 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~iv-viNK~D~~~~~~~~~~~~l~~~l 169 (711)
..++.....+|.++++||+.-|....|.+++..+..+|+|.++ |++..|+.... .++.++.++|
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~--stLr~~KKrl 189 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP--STLRSIKKRL 189 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccCh--HHHHHHHHHH
Confidence 5778888999999999999999999999999999999999876 78999997643 3444444433
No 332
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=6.4e-09 Score=96.24 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=84.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
..+.++...+.|+|.-++||||++.+.+ .|...+ .+..+...|+.....+ +...+.++.+|||+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryC--kgifTk---dykktIgvdflerqi~-----------v~~Edvr~mlWdta 77 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK---DYKKTIGVDFLERQIK-----------VLIEDVRSMLWDTA 77 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHh--cccccc---ccccccchhhhhHHHH-----------hhHHHHHHHHHHhc
Confidence 3345677899999999999999999997 332211 0111222333322111 11245677899999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH--HhcCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA--DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~--~~~~ip~ivviNK~D~~~ 155 (711)
|+.+|...+..+.+.+.+.+||++.++.-... +.++.+.. ....+|.++|-||+|+..
T Consensus 78 gqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 78 GQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred cchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 99999999999999999999999998754433 33343333 345899999999999865
No 333
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.81 E-value=3.5e-08 Score=84.80 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 396 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 396 (711)
++||.+.|.+++..++.|++..|||.+|+++.||+|++.+.+...+|++|.... .++++|.|||.+++ .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~----~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHH----EPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECC----cCcCEECCCCEEEEEECCCCHH
Confidence 578999999999988889999999999999999999999988889999997543 56899999999998 4543
Q ss_pred ccccCccccCCCC
Q 005154 397 DTITGETLCDADH 409 (711)
Q Consensus 397 ~~~~Gdtl~~~~~ 409 (711)
++++|+.|+++++
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998643
No 334
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.78 E-value=5.1e-08 Score=98.13 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCchHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~df~~ 104 (711)
+|.++|..++||||+...+..+... .|. ..-|.|++.....+.. ....+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-------------~dT----~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-------------RDT----LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-------------GGG----GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-------------hhc----cccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 4789999999999999999722110 011 1124466655555554 456999999999998866
Q ss_pred H-----HHHHHHhcCeEEEEEeCCCCCChhH----HHHHHHHHh--cCCCeEEEEeccCcCCcc
Q 005154 105 E-----VERALRVLDGAICLFDSVAGVEPQS----ETVWRQADK--YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 105 ~-----~~~~l~~~D~~llvvda~~g~~~~t----~~~~~~~~~--~~ip~ivviNK~D~~~~~ 157 (711)
. ....++.++++|+|+|+........ ...+..+.+ .++++.+++.|||....+
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 5 4667899999999999983322222 233344443 467788999999998755
No 335
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.78 E-value=4.7e-08 Score=82.45 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=68.4
Q ss_pred CeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--cc
Q 005154 323 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 398 (711)
Q Consensus 323 p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 398 (711)
||.+.|..++..+ .|++..|||.+|++++||+|+..+.+...+|++|...+ .++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDD----EEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECC----eECCEECCCCEEEEEECCCCHHHC
Confidence 6888999998877 89999999999999999999999988888999987543 78999999999996 5554 47
Q ss_pred ccCccccC
Q 005154 399 ITGETLCD 406 (711)
Q Consensus 399 ~~Gdtl~~ 406 (711)
++|++|++
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 88998874
No 336
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.77 E-value=9.9e-08 Score=94.56 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=36.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe--EEEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR--ICFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~--ivviNK~D~~~ 155 (711)
+....+|+|.|.. ...... -..+|.+|+|+|+.++...+.. . ..++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhccc
Confidence 4578899999932 111111 1236899999999876653221 1 113333 89999999874
No 337
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.74 E-value=1.9e-07 Score=97.10 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|.+|+||||++|+|+..... ..+.. . +.+.........+.+..+++|||||..+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~--~vs~f-~--------------s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIA--TVSAF-Q--------------SEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCC-C--------------CcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 4688999999999999999999722110 00000 0 11222223334467899999999998874
Q ss_pred H---HHHHHHHH------hcCeEEEEEeCCC-CCChhHHHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 103 T---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~---~~~~~~l~------~~D~~llvvda~~-g~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
. .+....++ ..|++|+|..... ........+++.+.. .-.++++++|+.|...
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2 12222333 4689999954432 344344444444432 1246899999999763
No 338
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.71 E-value=2.6e-08 Score=95.89 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=46.8
Q ss_pred CeeEEEEeCCCCCch----HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH-hcCCCeEEEEecc
Q 005154 88 KHRINIIDTPGHVDF----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVNKM 151 (711)
Q Consensus 88 ~~~i~liDtPG~~df----~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~-~~~ip~ivviNK~ 151 (711)
...+.||||||..+. ...+..++..+|++|+|+++...........+.+.. ...-.+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999997542 245778889999999999999877766555555444 4455577888985
No 339
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.71 E-value=7.4e-08 Score=80.22 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=66.9
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCC--CCceeecceeEEeccCceeecCeeecCCEEEEeCCCc--cc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 399 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~--~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~ 399 (711)
+.++|++++.+++.|+++++||++|+|++||.+.+.+ .....+|.+|+..+ .+++++.||+++++.+.+. ++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3578999999998899999999999999999999887 56678888888765 5688999999999977654 78
Q ss_pred cCcccc
Q 005154 400 TGETLC 405 (711)
Q Consensus 400 ~Gdtl~ 405 (711)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 888875
No 340
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.3e-07 Score=97.60 Aligned_cols=163 Identities=16% Similarity=0.204 Sum_probs=106.8
Q ss_pred CccchhhhhhhccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeee
Q 005154 1 MAVSIMEKQRRHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 80 (711)
Q Consensus 1 ~~l~~~~~~r~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~ 80 (711)
++++.++.||......... -.++.++|..|.|||||+|.|+...-. +....+..+.+..+..++...
T Consensus 2 vg~~~lP~q~~r~~~KkG~----~ftlmvvG~sGlGKsTfiNsLf~~~l~---------~~~~~~~~~~~~~~t~~i~~~ 68 (366)
T KOG2655|consen 2 VGFANLPNQVHRKSVKKGF----DFTLMVVGESGLGKSTFINSLFLTDLS---------GNREVPGASERIKETVEIEST 68 (366)
T ss_pred CccccChHHHHHHHHhcCC----ceEEEEecCCCccHHHHHHHHHhhhcc---------CCcccCCcccCccccceeeee
Confidence 3567777888555444444 589999999999999999999844111 011111122222334456666
Q ss_pred eEEEEecCe--eEEEEeCCCCCchHHH--------------HHHHHH-------------hcCeEEEEEeCC-CCCChhH
Q 005154 81 ATTTYWNKH--RINIIDTPGHVDFTLE--------------VERALR-------------VLDGAICLFDSV-AGVEPQS 130 (711)
Q Consensus 81 ~~~~~~~~~--~i~liDtPG~~df~~~--------------~~~~l~-------------~~D~~llvvda~-~g~~~~t 130 (711)
...+.-++. .++++||||..|+... ...++. ..++||+.+.++ +|+.+..
T Consensus 69 ~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D 148 (366)
T KOG2655|consen 69 KVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD 148 (366)
T ss_pred eeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh
Confidence 665555554 6788999999875222 122221 358899999887 7799988
Q ss_pred HHHHHHHHhcCCCeEEEEeccCcCCcc-HHHHHHHHHHHhCCcceEEE
Q 005154 131 ETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 131 ~~~~~~~~~~~ip~ivviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~ 177 (711)
.+..+.+.. .+++|-||-|.|....+ +....+.+.+.+....+++.
T Consensus 149 i~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 149 IEFMKKLSK-KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred HHHHHHHhc-cccccceeeccccCCHHHHHHHHHHHHHHHHHcCccee
Confidence 888776554 58889999999998755 55566666666665555443
No 341
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6e-08 Score=89.22 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+.-.+.++|--|||||||++.|- .++.+. .. -|.+.+.-.+...+.+++-+|..||..-
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLK-----dDrl~q---------hv-------PTlHPTSE~l~Ig~m~ftt~DLGGH~qA 77 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLK-----DDRLGQ---------HV-------PTLHPTSEELSIGGMTFTTFDLGGHLQA 77 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHc-----cccccc---------cC-------CCcCCChHHheecCceEEEEccccHHHH
Confidence 35678899999999999999883 111110 00 1455555556668899999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH----HhcCCCeEEEEeccCcCCccHHHHHHHHHHHhC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 170 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~----~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~ 170 (711)
..-+..++..+|+++++||+.+.-.-+ .+..++.+ .-.++|+++..||+|++.+- ..++++-.++
T Consensus 78 rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~ 147 (193)
T KOG0077|consen 78 RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLG 147 (193)
T ss_pred HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHH
Confidence 888999999999999999998532221 22222222 23689999999999999865 3344444443
No 342
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.67 E-value=1.7e-07 Score=100.03 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCC--
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV-- 100 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~-- 100 (711)
..||||+|.+|+|||||+|+|. |. +.-++|...+-.. ..|... ..+.+.. -.+.+||.||..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr---Gl----~~~d~~aA~tGv~------etT~~~--~~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR---GL----GHEDEGAAPTGVV------ETTMEP--TPYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT---T------TTSTTS--SSSH------SCCTS---EEEE-SS-TTEEEEEE--GGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CC----CCCCcCcCCCCCC------cCCCCC--eeCCCCCCCCCeEEeCCCCCCC
Confidence 5799999999999999999994 21 1111111000000 001111 2222333 369999999975
Q ss_pred chHHHHHH---HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 101 DFTLEVER---ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 101 df~~~~~~---~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
.|..+... .+...|.+|++.+. ........+.+.+.++++|+.+|-+|+|.
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 34322111 34566988777664 34555667778889999999999999995
No 343
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.64 E-value=2e-07 Score=94.81 Aligned_cols=117 Identities=24% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
...+.|+++|.+|+|||||+++|+. +..... ... -.++|. |.++.. +. .+..+.+.||-|+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~-Aal~p~-drL---FATLDp---------T~h~a~--Lp-sg~~vlltDTvGFis 238 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTK-AALYPN-DRL---FATLDP---------TLHSAH--LP-SGNFVLLTDTVGFIS 238 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHh-hhcCcc-chh---heeccc---------hhhhcc--CC-CCcEEEEeechhhhh
Confidence 4468999999999999999999972 211110 000 011111 111111 11 456788999999763
Q ss_pred -h-------HHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCCC-------eEEEEeccCcCC
Q 005154 102 -F-------TLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-------RICFVNKMDRLG 155 (711)
Q Consensus 102 -f-------~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~ip-------~ivviNK~D~~~ 155 (711)
. ...+..-+..+|.++.|+|.+++. ..|...++.-+...++| ++=|=||+|...
T Consensus 239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 1 122344456789999999999764 55677788888888886 233557777543
No 344
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.63 E-value=4.3e-07 Score=94.68 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..||.++|.+|.|||||+|.|+........ ...+.......+..++......+.-++ ..+++|||||+.|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISED--------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-----------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccc--------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 368999999999999999999732221110 000000112223445555555554443 4788999999886
Q ss_pred hHHH--------------HHHHHH-------------hcCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 102 FTLE--------------VERALR-------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 102 f~~~--------------~~~~l~-------------~~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
.... ...++. ..|+||++++++ +|+.+.....++.+... +++|-|+.|.|.
T Consensus 76 ~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~ 154 (281)
T PF00735_consen 76 NIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADT 154 (281)
T ss_dssp SSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccc
Confidence 3111 111111 248999999987 68888888887776654 889999999999
Q ss_pred CCcc-HHHHHHHHHHHhC
Q 005154 154 LGAN-FFRTRDMIVTNLG 170 (711)
Q Consensus 154 ~~~~-~~~~~~~l~~~l~ 170 (711)
...+ +....+.+++.+.
T Consensus 155 lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLE 172 (281)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 8754 4444555555553
No 345
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.62 E-value=3.8e-07 Score=91.52 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch--
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df-- 102 (711)
.+|.++|.+|+||||+.|.|+......... .....|.........+.+..+++|||||..|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~----------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS----------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T----------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc----------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 479999999999999999997222110000 01123444555555779999999999997652
Q ss_pred -----HHHHHHHHH----hcCeEEEEEeCCCCCChhHHHHHHHHHh-cC----CCeEEEEeccCcCCcc
Q 005154 103 -----TLEVERALR----VLDGAICLFDSVAGVEPQSETVWRQADK-YG----VPRICFVNKMDRLGAN 157 (711)
Q Consensus 103 -----~~~~~~~l~----~~D~~llvvda~~g~~~~t~~~~~~~~~-~~----ip~ivviNK~D~~~~~ 157 (711)
..++..++. ..+++|+|++.. .+....+..++.+.. .+ ..++|+++..|....+
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 233444443 359999999998 667666666666543 22 2477888988876543
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.58 E-value=3e-07 Score=91.95 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
..|.++.+.+++.|.+|+|||+|+|.++.... +...+.. ..|-|..... ..-+..++++|.|
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~--------------K~g~Tq~in~---f~v~~~~~~vDlP 191 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKS--------------KNGKTQAINH---FHVGKSWYEVDLP 191 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCC--------------CCccceeeee---eeccceEEEEecC
Confidence 34556778999999999999999999973221 1111111 1233333222 2346789999999
Q ss_pred CCC----------chHHHHHHHHH---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 98 GHV----------DFTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~----------df~~~~~~~l~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|+. |+...+..++. ..-.+.+++|++-++++........+.+.++|+.+|+||||+..
T Consensus 192 G~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 192 GYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred CcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 932 44444454443 34567889999999999999999999999999999999999864
No 347
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.57 E-value=3.8e-07 Score=94.20 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC--ccccchhhhhhcCcee-eeeeEE--------------
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT--ATMDWMEQEQERGITI-TSAATT-------------- 83 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~--~~~d~~~~e~~~giti-~~~~~~-------------- 83 (711)
......|.|+|.+|+|||||+++++.........+.+ .|. +..|.... +..|+.+ ......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI-~gD~~t~~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI-EGDQQTVNDAARI-RATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE-CCCcCcHHHHHHH-HhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 3457899999999999999999998653222222222 111 11132211 2223221 111100
Q ss_pred -EEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 84 -TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 84 -~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+...+..+.||++-|..-.... .-+.. +.-+.+++..+|.... . +.-.....+-++++||+|+..
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~--fdlge-~~~v~vlsV~eg~dkp-l---Kyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPAS--FDLGE-KHKVAVLSVTEGEDKP-L---KYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCc--cchhh-ceeEEEEECccccccc-h---hccchhhcCcEEEEEhHHcCc
Confidence 0113456778888874210000 01111 3345777777764311 1 111223466799999999864
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=8.5e-07 Score=86.48 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe--eEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~--~i~liDtPG~~d 101 (711)
-.||.++|.+|.|||||+|.|.... ..++ +. .|....-....+.+++....++-++. ++++|||||+.|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~-s~-------~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDS-SS-------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-Hhhc-cC-------CCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 4899999999999999999997321 1111 11 11111111112234444444444543 788999999987
Q ss_pred hHHH--------------HHHHHH--------------hcCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 102 FTLE--------------VERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 102 f~~~--------------~~~~l~--------------~~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
++.+ ...+++ ...++++.+.++ +...+-..+++..+.+. +.++-|+-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 5221 222222 247888888887 55667777776665543 56788999999
Q ss_pred cCCccH-HHHHHHHHHHhCC
Q 005154 153 RLGANF-FRTRDMIVTNLGA 171 (711)
Q Consensus 153 ~~~~~~-~~~~~~l~~~l~~ 171 (711)
....+. ....+.+++.|..
T Consensus 196 tlTleEr~~FkqrI~~el~~ 215 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEK 215 (336)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 877542 2334445555533
No 349
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.53 E-value=7.4e-07 Score=74.95 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=64.0
Q ss_pred CeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--cc
Q 005154 323 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 398 (711)
Q Consensus 323 p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 398 (711)
||.+.|..++... |++..|||.+|++++||+|+..+.+...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHC
Confidence 5778888887543 899999999999999999999998888899998654 267999999999999 3333 26
Q ss_pred ccCccccC
Q 005154 399 ITGETLCD 406 (711)
Q Consensus 399 ~~Gdtl~~ 406 (711)
++|+.|++
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 78888763
No 350
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.52 E-value=3.2e-07 Score=88.90 Aligned_cols=114 Identities=17% Similarity=0.042 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-ecCeeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~i~liDtPG~~df 102 (711)
...++|+|...+|||.|+-.+...........++.++. +..+.+. -+...+.||||+|++||
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-----------------s~~v~V~dg~~v~L~LwDTAGqedY 66 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-----------------SANVTVDDGKPVELGLWDTAGQEDY 66 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-----------------eEEEEecCCCEEEEeeeecCCCccc
Confidence 56788999999999999987752111111111111100 1112221 23456889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChh--HHHHHHHHHh--cCCCeEEEEeccCcC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK--YGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~--t~~~~~~~~~--~~ip~ivviNK~D~~ 154 (711)
..-...+...+|.+|++++........ ...++...+. .++|+|+|.+|.|+.
T Consensus 67 DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 67 DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 765556788899999999987544332 3334444443 479999999999987
No 351
>PTZ00258 GTP-binding protein; Provisional
Probab=98.50 E-value=6.5e-07 Score=96.74 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-------------- 87 (711)
.+...|+|+|.||+|||||+|+|+ +.....+.. + +.|+......+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~n~-p--------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC---KQQVPAENF-P--------------FCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh---cCcccccCC-C--------------CCcccceEEEEecccchhhHHHHHcCCc
Confidence 346789999999999999999995 322222211 2 23555555444443
Q ss_pred ---CeeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCC
Q 005154 88 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 123 (711)
Q Consensus 88 ---~~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~ 123 (711)
...+.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999653 3445677889999999999985
No 352
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.47 E-value=4.5e-07 Score=93.74 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=53.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-----------------e
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----------------H 89 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-----------------~ 89 (711)
|+|+|.||+|||||+|+|+ +.....+. .+ +.|+......+.+.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~n-~p--------------ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAAN-YP--------------FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCcccc-cc--------------ccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 5899999999999999995 32222211 11 224444433333322 2
Q ss_pred eEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCC
Q 005154 90 RINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 123 (711)
Q Consensus 90 ~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~ 123 (711)
.+.++||||..+ ........++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 599999999653 3335667789999999999986
No 353
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.43 E-value=1e-06 Score=94.17 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC----------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 88 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~---------------- 88 (711)
.+|+|+|.||+|||||+|+|+ +.....+. .+ +.|+......+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt---~~~~~v~n-yp--------------ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT---KAGAEAAN-YP--------------FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCeecc-cc--------------cccccceEEEEEeccccchhhHHhcCCcccc
Confidence 579999999999999999995 32222221 12 223333333333222
Q ss_pred -eeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCC
Q 005154 89 -HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 123 (711)
Q Consensus 89 -~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~ 123 (711)
..+.++||||..+ ........++.+|++++|||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3589999999653 2335677789999999999996
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.42 E-value=1.2e-06 Score=83.26 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
......++.+|++++|+|++++...+...+...+...+.|+++|+||+|+..
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 3455677789999999999987766666666666667899999999999853
No 355
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.38 E-value=2.2e-06 Score=71.79 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=62.2
Q ss_pred EEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe--CCCccccCc
Q 005154 325 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GLKDTITGE 402 (711)
Q Consensus 325 ~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~Gd 402 (711)
++.|..++..+..|+.+.|||.+|++++||+|.+.+.+...+|++|... ..+++.|.|||.++|. +-+++.+|+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i~~G~ 77 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF----DGELDEAGAGESVTLTLEDEIDVSRGD 77 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC----CcEeCEEcCCCEEEEEECCccccCCCC
Confidence 4556666665556778999999999999999999998888899998754 2678999999999983 334478888
Q ss_pred ccc
Q 005154 403 TLC 405 (711)
Q Consensus 403 tl~ 405 (711)
+|+
T Consensus 78 vl~ 80 (81)
T cd03695 78 VIV 80 (81)
T ss_pred EEe
Confidence 876
No 356
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.37 E-value=2e-06 Score=72.52 Aligned_cols=79 Identities=25% Similarity=0.325 Sum_probs=64.5
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccc
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTI 399 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~ 399 (711)
|.+.|.+++..++.|.+..|||.+|++++||++.+.+.+...+|++|... ..++++|.|||.+++ .+++ ++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 45678888877888999999999999999999999988877888888654 367899999999998 3432 367
Q ss_pred cCccccC
Q 005154 400 TGETLCD 406 (711)
Q Consensus 400 ~Gdtl~~ 406 (711)
+|++|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 7887763
No 357
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.37 E-value=2.8e-06 Score=83.47 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch--
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df-- 102 (711)
-+|+++|.|.+|||||+..++ ..-+...+. .-.|....+.-+.+++..|+++|.||...-
T Consensus 63 aRValIGfPSVGKStlLs~iT---~T~SeaA~y---------------eFTTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKIT---STHSEAASY---------------EFTTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhh---cchhhhhce---------------eeeEEEeecceEEecCceEEEecCcccccccc
Confidence 679999999999999999995 211111110 012677777788899999999999997753
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCC
Q 005154 103 -----TLEVERALRVLDGAICLFDSVAG 125 (711)
Q Consensus 103 -----~~~~~~~l~~~D~~llvvda~~g 125 (711)
-.+++...+-+|.++.|.||+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 23466778889999999999864
No 358
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.32 E-value=2.6e-06 Score=72.46 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=63.4
Q ss_pred eEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCC--CceeecceeEEeccCceeecCeeecCCEEEE--eCCC--c
Q 005154 324 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--D 397 (711)
Q Consensus 324 ~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~ 397 (711)
|++.|..++..++.|++..|||.+|++++||+|.+.+. +...+|++|... ..++++|.|||.+++ .+++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHH
Confidence 35667777777888999999999999999999987654 456778888643 367899999999999 3443 3
Q ss_pred cccCccccCC
Q 005154 398 TITGETLCDA 407 (711)
Q Consensus 398 ~~~Gdtl~~~ 407 (711)
+.+|+.|+++
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 6789998864
No 359
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.31 E-value=4.4e-06 Score=71.05 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=62.3
Q ss_pred EEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC----ceeecceeEEeccCceeecCeeecCCEEEE--eCCC--
Q 005154 325 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 396 (711)
Q Consensus 325 ~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~----~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 396 (711)
.+.|..++..++.|++..|||.+|++++||++++.+.+ ...+|++|... ..++++|.|||.+++ .+++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCHH
Confidence 46677777778889999999999999999999998863 46788888643 367999999999998 3443
Q ss_pred ccccCccccC
Q 005154 397 DTITGETLCD 406 (711)
Q Consensus 397 ~~~~Gdtl~~ 406 (711)
++++|++|++
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 3677887763
No 360
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.29 E-value=1.5e-05 Score=89.65 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=70.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+.+-..+|+++|.+|+||||++|+|+...... .....+ + |.........+.+..+++|||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~--vss~~~--------------~-TTr~~ei~~~idG~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFS--TDAFGM--------------G-TTSVQEIEGLVQGVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcccccc--ccCCCC--------------C-ceEEEEEEEEECCceEEEEECCCC
Confidence 34446799999999999999999997322111 111111 1 222223334457889999999998
Q ss_pred CchH------HH----HHHHHH--hcCeEEEEEeCCCC-CChhHHHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 100 VDFT------LE----VERALR--VLDGAICLFDSVAG-VEPQSETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~------~~----~~~~l~--~~D~~llvvda~~g-~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
.+.. .+ +...+. ..|++|+|+..... ........++.+.+ .=.-+|||.|..|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 8641 12 222333 36888888765422 22233334443322 1234788999999875
No 361
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=2.3e-06 Score=80.68 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
.++.++++|..|.||||++++.+ +|......... -|..++.....-..+..+++.|||.|.+.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~at--------------~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPAT--------------LGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecccCc--------------ceeEEeeeeeecccCcEEEEeeecccceee
Confidence 37899999999999999999997 44433322110 122222222221223478999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHH-H-H-HhcCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-Q-A-DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~-~-~-~~~~ip~ivviNK~D~~~ 155 (711)
....-.+.-...|+++++|....+..+...-|. - + ...++|++++.||.|...
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 777666667778999999999766655443332 1 1 235799999999999754
No 362
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=4.4e-05 Score=79.12 Aligned_cols=136 Identities=22% Similarity=0.201 Sum_probs=88.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCc---cccchhhhhhcCceeeeee-EEEEe----------
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA---TMDWMEQEQERGITITSAA-TTTYW---------- 86 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~---~~d~~~~e~~~giti~~~~-~~~~~---------- 86 (711)
-+..+-|.++|+-..||||+++.|+...-.-.++|.-....+ .|.-...+.-.|-+..... .+|..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 345688999999999999999999854322112222111000 0000011111121111110 00000
Q ss_pred -------c---CeeEEEEeCCCCC-----------chHHHHHHHHHhcCeEEEEEeCCC-CCChhHHHHHHHHHhcCCCe
Q 005154 87 -------N---KHRINIIDTPGHV-----------DFTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPR 144 (711)
Q Consensus 87 -------~---~~~i~liDtPG~~-----------df~~~~~~~l~~~D~~llvvda~~-g~~~~t~~~~~~~~~~~ip~ 144 (711)
. -..+++|||||.- ||..-....+..+|.+++++|+.. .+...+.+++.+++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0 1469999999954 688888888999999999999984 57788889999998888888
Q ss_pred EEEEeccCcCCc
Q 005154 145 ICFVNKMDRLGA 156 (711)
Q Consensus 145 ivviNK~D~~~~ 156 (711)
=||+||.|....
T Consensus 215 RVVLNKADqVdt 226 (532)
T KOG1954|consen 215 RVVLNKADQVDT 226 (532)
T ss_pred EEEeccccccCH
Confidence 999999998764
No 363
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.18 E-value=7.4e-06 Score=78.53 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC--ccccchhhhhhcCceee-eeeE-------EE---------
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT--ATMDWMEQEQERGITIT-SAAT-------TT--------- 84 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~--~~~d~~~~e~~~giti~-~~~~-------~~--------- 84 (711)
.+.|.+.|++|||||||+++++.......+.+-+ .+. +..|.....+..|..+. ..+. ++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI-~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~ 91 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVI-TGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELV 91 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEE-eceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHh
Confidence 5899999999999999999998655433332222 111 22233222221222111 1111 00
Q ss_pred -EecCeeEEEEeCCCCCchHHHHHHHHHhcC-eEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 85 -YWNKHRINIIDTPGHVDFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 85 -~~~~~~i~liDtPG~~df~~~~~~~l~~~D-~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+....+.||.+.| ..... .+....| .-|+|+|..+|...-..-.- ..-..-++||||.|+..
T Consensus 92 ~~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP----~i~~aDllVInK~DLa~ 156 (202)
T COG0378 92 LDFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGP----GIFKADLLVINKTDLAP 156 (202)
T ss_pred hcCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCC----ceeEeeEEEEehHHhHH
Confidence 01224677888887 21111 1122335 77899999988653221000 00012488999999864
No 364
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.16 E-value=6.2e-05 Score=68.56 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccch--hhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWM--EQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~--~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
+.-.|.++|.-++|||.+++.|++-.......- . .+.-|.. ..|..|| -...+.|.||.|..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~--pTiEDiY~~svet~rg------------arE~l~lyDTaGlq 71 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--H--PTIEDIYVASVETDRG------------AREQLRLYDTAGLQ 71 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc--c--cchhhheeEeeecCCC------------hhheEEEeeccccc
Confidence 456889999999999999999986444321100 0 0111111 0122222 13578899999999
Q ss_pred chHHHH-HHHHHhcCeEEEEEeCCCCCChhHHHHHHHH-H----hcCCCeEEEEeccCcCC
Q 005154 101 DFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQA-D----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~-~~~l~~~D~~llvvda~~g~~~~t~~~~~~~-~----~~~ip~ivviNK~D~~~ 155 (711)
+...+. ..++..+|+.++|.|..+.-..+..+.+..- . +..+|+++..||+|+..
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 72 GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 884454 4467788999999999876655555444322 1 34689999999999964
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=5.6e-06 Score=89.06 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCC---cceeeeecCCCccccch---hhhh------hcCceeeeeeEE------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEVHEGTATMDWM---EQEQ------ERGITITSAATT------ 83 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~---~~~~~~~~~g~~~~d~~---~~e~------~~giti~~~~~~------ 83 (711)
.+..+++++|++|+||||++..|....-. ..+.+-+ ..|.. ..|+ ..|+.+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li-----t~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL-----TTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE-----ecccccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 44679999999999999999999743210 1122211 11221 1222 224444322211
Q ss_pred -EEecCeeEEEEeCCCCC---chHHHHHHHHHhc---CeEEEEEeCCCCCChhHHHHHHHHHhcCCC-------eEEEEe
Q 005154 84 -TYWNKHRINIIDTPGHV---DFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVP-------RICFVN 149 (711)
Q Consensus 84 -~~~~~~~i~liDtPG~~---df~~~~~~~l~~~---D~~llvvda~~g~~~~t~~~~~~~~~~~ip-------~ivviN 149 (711)
-.+.++.+.||||||.. ++..+....+..+ +-.++|++++.+....+..++......++| .=++++
T Consensus 210 l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred HHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEe
Confidence 12357899999999976 4444555555444 345999999988777666666555444333 247789
Q ss_pred ccCcCC
Q 005154 150 KMDRLG 155 (711)
Q Consensus 150 K~D~~~ 155 (711)
|+|-..
T Consensus 290 KlDEt~ 295 (374)
T PRK14722 290 KLDEAS 295 (374)
T ss_pred ccccCC
Confidence 999653
No 366
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.14 E-value=4.9e-06 Score=80.97 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~d 101 (711)
+.+.|.++|.+|+|||++=..+..+--+. +-...|-||+....++.+ ++..+++||+.|++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~-----------------D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIAR-----------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhh-----------------hhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 36889999999999999877775221111 011124466665555555 447899999999998
Q ss_pred hHHHHHH-----HHHhcCeEEEEEeCCCCCChhHHH----HHHHHHhc--CCCeEEEEeccCcCCccHH
Q 005154 102 FTLEVER-----ALRVLDGAICLFDSVAGVEPQSET----VWRQADKY--GVPRICFVNKMDRLGANFF 159 (711)
Q Consensus 102 f~~~~~~-----~l~~~D~~llvvda~~g~~~~t~~----~~~~~~~~--~ip~ivviNK~D~~~~~~~ 159 (711)
|..+..+ .++..+..+.|+|+...-...... .++.+.+. ..++++.+.|||+...+..
T Consensus 66 fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 66 FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchH
Confidence 8766544 567889999999998543332222 23333332 3456778999999876643
No 367
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.10 E-value=9.3e-06 Score=77.39 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
+..++..+|.+++|+|++.+.......+.+.+.. .++|+++|+||+|+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 4678999999999999998766666666666554 3489999999999864
No 368
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.10 E-value=2.8e-05 Score=85.37 Aligned_cols=116 Identities=18% Similarity=0.087 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+-.+|+++|..|+|||||+-+|+.......-+ .+ .+ .|+|= ..+.-......++||+...+-
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-~r------l~--------~i~IP---advtPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-RR------LP--------RILIP---ADVTPENVPTSIVDTSSDSDD 69 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhcccccc-cc------CC--------ccccC---CccCcCcCceEEEecccccch
Confidence 34678899999999999999998443311100 00 00 11111 111113345889999977776
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCC--CChhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAG--VEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g--~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
.......++.+|++.++.+.++. +...+..++-+.++ .++|+|+|.||+|....
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 66678889999999999987752 22233344444443 47999999999997654
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.08 E-value=2.6e-05 Score=75.55 Aligned_cols=128 Identities=17% Similarity=0.248 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcc-eeeee--cCCC-ccccchhh-hhhcCceeeeeeEEE-------------Eec
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEV--HEGT-ATMDWMEQ-EQERGITITSAATTT-------------YWN 87 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~-~~~~~--~~g~-~~~d~~~~-e~~~giti~~~~~~~-------------~~~ 87 (711)
.++++|.+|+||||++-.+........ +..-+ +... ...+.... -...|+.+....... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999988864321111 11111 1100 00000000 012233322211100 124
Q ss_pred CeeEEEEeCCCCCchHHHHHHH----HH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDFTLEVERA----LR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~----l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
++.+.++||||...+....... .. ..|.+++|+|+..+.. .....+......++ .-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 6789999999986432222222 22 3799999999965432 22333444344453 567889999864
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.08 E-value=2.3e-05 Score=73.89 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=40.9
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
.++.+.||||||... .....++.+|.+++|+.+..+-..... .......--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh----hhhHhhhcCEEEEeCCC
Confidence 468999999999653 445699999999999988733222222 22223344589999998
No 371
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.06 E-value=8.6e-05 Score=72.33 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=55.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
+.+.+.++|||+... ..+..++..+|.+++++.+...........++.+.+.++|..+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 578999999997654 35667889999999999998665556677788888889999999999997543
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.05 E-value=3.3e-05 Score=84.48 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCC-ccccchh-hhhhcCceeeeeeEEE-------------E
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATTT-------------Y 85 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~-~~~d~~~-~e~~~giti~~~~~~~-------------~ 85 (711)
...|+++|..|+||||++..|.... |........|... ...++.. .....++.+......- .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999996432 2211111111110 1112211 1122344333211100 0
Q ss_pred ecCeeEEEEeCCCCCchH----HHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 86 WNKHRINIIDTPGHVDFT----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 86 ~~~~~i~liDtPG~~df~----~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
..++.+.||||||..... .++..... ..|-++||+|+..|.... ...+...+.--+.-+++||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~--~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE--AQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH--HHHHHHHhccCCcEEEEECccCC
Confidence 136899999999976443 33333322 247899999998764432 22222222223557889999974
No 373
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.02 E-value=0.00011 Score=71.19 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=61.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCccHHHHHHHHHHH
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTN 168 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~~~~~~~~l~~~ 168 (711)
.+.+||||+..+. ....++..+|.+|+++++.......+...++.+...+.+. .+|+|++|.......+.++.+.+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 7999999987653 4667889999999999998765556666667766666654 578999997655444556777777
Q ss_pred hCCcc
Q 005154 169 LGAKP 173 (711)
Q Consensus 169 l~~~~ 173 (711)
++...
T Consensus 142 ~~~~v 146 (179)
T cd02036 142 LGVPL 146 (179)
T ss_pred hCCCE
Confidence 77543
No 374
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=2.1e-05 Score=76.11 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=44.3
Q ss_pred CCCCC-chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 96 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 96 tPG~~-df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
-|||. ....++...+..+|.+++|+|++++.......+...+ .+.|+++|+||+|+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD 60 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC
Confidence 36765 3567788899999999999999987665555444433 3689999999999853
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.01 E-value=5.6e-05 Score=72.09 Aligned_cols=123 Identities=20% Similarity=0.111 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeee--cCCCccccchhhhhhcCce-eeeee--EEEE---------------
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGIT-ITSAA--TTTY--------------- 85 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~--~~g~~~~d~~~~e~~~git-i~~~~--~~~~--------------- 85 (711)
.+.++|..|+|||||+++++...... +.+.+ +.|....|...... .+.. +.... ....
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~-~~~~i~~~~G~~~~d~~~~~~-~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~ 79 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGR-KIAVIENEFGEVGIDNQLVVD-TDEEIIEMNNGCICCTVRGDLIRALLDLLER 79 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCC-cEEEEecCCCccchhHHHHhC-CCceEEEeCCCEeEeeCchhHHHHHHHHHHH
Confidence 46799999999999999998543111 11111 12333333222211 1111 11111 0000
Q ss_pred ----ecCeeEEEEeCCCCCchHHHH--------HHHHHhcCeEEEEEeCCCCCChh--HHHHHHHHHhcCCCeEEEEecc
Q 005154 86 ----WNKHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 86 ----~~~~~i~liDtPG~~df~~~~--------~~~l~~~D~~llvvda~~g~~~~--t~~~~~~~~~~~ip~ivviNK~ 151 (711)
.......+|||||..+-.... .......|.++.++|+....... ......|+... -++++||+
T Consensus 80 ~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~ 156 (158)
T cd03112 80 LDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKT 156 (158)
T ss_pred HHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecc
Confidence 124577899999987532222 12333469999999997533221 12233444433 47899999
Q ss_pred Cc
Q 005154 152 DR 153 (711)
Q Consensus 152 D~ 153 (711)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 95
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.00 E-value=2.2e-05 Score=77.31 Aligned_cols=57 Identities=14% Similarity=-0.085 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 334446788888999999999999998765444444422 235789999999999864
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.99 E-value=7.6e-05 Score=77.63 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeeecCCCc-cc--cch-hhhhhcCceeeeeeE-----E--------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTA-TM--DWM-EQEQERGITITSAAT-----T-------- 83 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~~~g~~-~~--d~~-~~e~~~giti~~~~~-----~-------- 83 (711)
.+.+.|+++|++|+||||++..|....... .+..-++..+. .. +.. ..-..+|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 446889999999999999999886433211 11111111000 00 000 011233443321100 0
Q ss_pred EEecCeeEEEEeCCCCCchHHHHH-------HHHH-----hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEecc
Q 005154 84 TYWNKHRINIIDTPGHVDFTLEVE-------RALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 84 ~~~~~~~i~liDtPG~~df~~~~~-------~~l~-----~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~ 151 (711)
...+++.+.||||||......... +... ..|.+++|+|++.+-... ..........+ +.-+++||+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~-~~g~IlTKl 227 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVG-LTGIILTKL 227 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCC-CCEEEEEcc
Confidence 012568999999999775322222 2222 279999999998543222 11222222222 346889999
Q ss_pred CcC
Q 005154 152 DRL 154 (711)
Q Consensus 152 D~~ 154 (711)
|..
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 974
No 378
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.99 E-value=3.1e-05 Score=70.62 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
...|+++|.+..|||||+-... +.. -| ...++..|+..--...++......+.+||..|+.+|.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV---------~~~------~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYV---------QNE------YD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEEeecccccCceeeehhhh---------cch------hH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 3679999999999999998775 110 01 2233455665555555555555678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCh-hHHHHHHHHHhcCCCe--EEEEeccCcC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPR--ICFVNKMDRL 154 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~-~t~~~~~~~~~~~ip~--ivviNK~D~~ 154 (711)
....-+...+-++++++|-+..-.- ...++.++++..+... |+|.+|-|..
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 8888888888999999999864433 3456778888876543 5788999964
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=5.5e-05 Score=80.33 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=69.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCcc----ccch-hhhhhcCceeeeeeEE-------------E
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDWM-EQEQERGITITSAATT-------------T 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~----~d~~-~~e~~~giti~~~~~~-------------~ 84 (711)
+...|+++|.+|+||||++..|...........-+.+..++ .+.. .....+++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999996433211111111111000 0111 1123345544322100 0
Q ss_pred EecCeeEEEEeCCCCCch----HHHHHHHHH--------hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 85 YWNKHRINIIDTPGHVDF----TLEVERALR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df----~~~~~~~l~--------~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
..+++.+.||||||.... ..+.....+ ..+..++|+|++.|...... .... .+.--+.-+++||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f-~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAF-HEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHH-HhhCCCCEEEEECCC
Confidence 125689999999997643 233333332 24778999999975433221 1111 111124468999999
Q ss_pred cC
Q 005154 153 RL 154 (711)
Q Consensus 153 ~~ 154 (711)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 53
No 380
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.95 E-value=3e-05 Score=81.16 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.7
Q ss_pred CCCCc-hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 97 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 97 PG~~d-f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
|||.. ...++...+..+|.+++|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 78874 577788999999999999999877666555554444 368999999999985
No 381
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.88 E-value=0.00011 Score=61.98 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=58.3
Q ss_pred EEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC---ceeecceeEEeccCceeecCeeecCCEEEE--eCCCccccC
Q 005154 327 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 401 (711)
Q Consensus 327 ~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~G 401 (711)
.|..++.....|.++.+||-+|++++|+.+.+.+.+ ...+|.+|... ...++++.+|+-|+| .++++++.|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~G 79 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKVG 79 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCCC
Confidence 344444444568999999999999999999998887 44577777654 367999999999998 466678889
Q ss_pred ccc
Q 005154 402 ETL 404 (711)
Q Consensus 402 dtl 404 (711)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 876
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.88 E-value=1.1e-05 Score=76.34 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
++++++|++|+|||||+|+|+... .-..+.+... ..+-+..|.......+ .....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~--~~~t~~is~~--------~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA--KQKTGEISEK--------TGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc--chhhhhhhcc--------cCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 789999999999999999997321 1111221110 0111222333333333 235689999998775
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.86 E-value=2.7e-05 Score=76.96 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcc-eeeeecCCCccccchh---h------hhhcCceeeeeeE----------E-
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWME---Q------EQERGITITSAAT----------T- 83 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~-~~~~~~~g~~~~d~~~---~------e~~~giti~~~~~----------~- 83 (711)
+.|+++|++|+||||.+-.|.+...... +++-+ ..|... . -+.-|+.+..... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li-----s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI-----SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-----EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee-----cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 5689999999999999999964432111 11111 112111 1 1222333221110 0
Q ss_pred --EEecCeeEEEEeCCCCCchHHH----HHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 84 --TYWNKHRINIIDTPGHVDFTLE----VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 84 --~~~~~~~i~liDtPG~~df~~~----~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+..+++.+.||||||......+ +...+. ..+-+++|+|++.+..... .........++. =++++|+|-..
T Consensus 77 ~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDETA 154 (196)
T ss_dssp HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSSS
T ss_pred HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCCC
Confidence 0114578999999997654333 322222 3488999999987643322 333433444444 45699999753
No 384
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.86 E-value=3e-05 Score=73.85 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..+|+++|.+|+|||||+|+|+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh
Confidence 4689999999999999999996
No 385
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.85 E-value=5.8e-05 Score=71.75 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCCChhHHHHH-HHHHhcCCCeEEEEeccCcCC
Q 005154 114 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~-~~~~~~~ip~ivviNK~D~~~ 155 (711)
|.+++|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887666555444 455677899999999999853
No 386
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.77 E-value=3.9e-05 Score=72.93 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+..+++++|++|+|||||+|+|+...... .+ ...|.|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~--~~---------------~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK--VG---------------NVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc--cc---------------CCCCcccceEEEEe---cCCEEEEECCCC
Confidence 46889999999999999999997322111 11 11244554444333 256999999994
No 387
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.77 E-value=4.6e-05 Score=73.69 Aligned_cols=56 Identities=16% Similarity=0.395 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
..+++++|.+|+|||||+|+|+.... ...+. ..|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~--~~~~~---------------~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA--CNVGA---------------TPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc--ceecC---------------CCCeEcceEEEEe---CCCEEEEECcCC
Confidence 46899999999999999999962211 11111 2355655443333 246899999994
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=97.77 E-value=0.0014 Score=72.31 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=70.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCCc-cccch-hhhhhcCceeeeeeE-----EE--------
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----TT-------- 84 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~~-~~d~~-~~e~~~giti~~~~~-----~~-------- 84 (711)
...|.++|.+|+||||++-.|.... |........|.... ..+.. ..-...|+.+..... .+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 5688999999999999888775422 22111111111100 00011 011223444332210 00
Q ss_pred EecCeeEEEEeCCCCCch----HHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHh--cCCCe-EEEEeccCcCC
Q 005154 85 YWNKHRINIIDTPGHVDF----TLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADK--YGVPR-ICFVNKMDRLG 155 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df----~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~--~~ip~-ivviNK~D~~~ 155 (711)
...++.+.||||||.... ..+...... ..|.+++|+|+..| | ...+++.. ..+++ -+|+||+|-..
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGDA 254 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCcc
Confidence 114578999999996532 222222222 35788999998754 1 22222222 13433 47889999532
Q ss_pred ccHHHHHHHHHHHhCC
Q 005154 156 ANFFRTRDMIVTNLGA 171 (711)
Q Consensus 156 ~~~~~~~~~l~~~l~~ 171 (711)
. .-..-++...++.
T Consensus 255 -r-gG~alsi~~~~~~ 268 (433)
T PRK10867 255 -R-GGAALSIRAVTGK 268 (433)
T ss_pred -c-ccHHHHHHHHHCc
Confidence 1 1224445555554
No 389
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.77 E-value=3.3e-05 Score=83.79 Aligned_cols=131 Identities=10% Similarity=0.142 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
+++.++|.+|+|||||+|+|+...........+ ....|.|.......+ +..+.++||||.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~------------s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~- 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITT------------SPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH- 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeee------------cCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-
Confidence 689999999999999999998543321111111 111355655443332 2346899999987531
Q ss_pred HHHHHH-----------HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc-cHHHHHHHHHHHhCC
Q 005154 105 EVERAL-----------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 171 (711)
Q Consensus 105 ~~~~~l-----------~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~-~~~~~~~~l~~~l~~ 171 (711)
++...+ .......+.+|....+.......+..+...+..+.++++|.+.... +.++..+.+++.++.
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 222211 1235556666655322211111111222234456677888777654 344444445555543
No 390
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.77 E-value=9.2e-05 Score=74.88 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+...|+|+|.+++|||||+|.|+...... ..+.-. ....+||-+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~----------~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTS----------QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCC----------CCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 457889999999999999999997321011 111100 1111344332222111 1357899999999775
Q ss_pred h------HHHHHHHHHh--cCeEEEEEeCC
Q 005154 102 F------TLEVERALRV--LDGAICLFDSV 123 (711)
Q Consensus 102 f------~~~~~~~l~~--~D~~llvvda~ 123 (711)
. ......++.. +|.+|+.++..
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 3 2224555555 89999888875
No 391
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.74 E-value=7.5e-05 Score=78.56 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=44.6
Q ss_pred CCCCCc-hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 96 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 96 tPG~~d-f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
-|||.. -..++...+..+|++|+|+|+..+.......+..... +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 388764 4667888999999999999999877666554444332 78999999999985
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00036 Score=77.63 Aligned_cols=131 Identities=20% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCC---cceeeeecCCCccccchhh----hhhcCceeeeeeEE------E-Eec
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEVHEGTATMDWMEQ----EQERGITITSAATT------T-YWN 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~---~~~~~~~~~g~~~~d~~~~----e~~~giti~~~~~~------~-~~~ 87 (711)
++..+|+|+|..|+||||++..|....-. -.+..-+...+...-.... ....|+.+...... + .+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 45689999999999999999998643211 0111111110000000000 01123322221100 0 124
Q ss_pred CeeEEEEeCCCCCchHHHHHH---HHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 88 KHRINIIDTPGHVDFTLEVER---ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~---~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
++.+.||||||.......... .+. .....++|+++..+..... ..++..... .+.-+|+||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 689999999997543222111 111 1245678888876544333 233333332 4567899999974
No 393
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.72 E-value=0.00023 Score=78.59 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=69.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeeecCCCc-c--ccchh-hhhhcCceeeeeeEEE-----------Ee
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTA-T--MDWME-QEQERGITITSAATTT-----------YW 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~~~g~~-~--~d~~~-~e~~~giti~~~~~~~-----------~~ 86 (711)
+...|.++|.+|+||||++..|....... .++.-++..+. . .+... .-...|+.+......- ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999999986433211 11221111110 0 01010 1122244332211000 01
Q ss_pred cCeeEEEEeCCCCCchHHHH------HHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCe-EEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEV------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~------~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~-ivviNK~D~~ 154 (711)
..+.+.||||||........ ...+...|.+++|+|++.|. ...+++... .+++ -+|+||+|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 34589999999976543332 23344679999999998762 222333332 2444 4788999964
No 394
>PRK14974 cell division protein FtsY; Provisional
Probab=97.72 E-value=0.00022 Score=76.13 Aligned_cols=127 Identities=21% Similarity=0.258 Sum_probs=66.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcc-eeeeecCCCc---cccchh-hhhhcCceeeeeeE-----E--------E
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTA---TMDWME-QEQERGITITSAAT-----T--------T 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~-~~~~~~~g~~---~~d~~~-~e~~~giti~~~~~-----~--------~ 84 (711)
+.+.|+++|.+|+||||++..|........ +..-+...+. ..+... .-..-|+.+..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 357899999999999998888864321111 1111111000 000111 11222333221110 0 0
Q ss_pred EecCeeEEEEeCCCCCc----hHHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhc--CC-CeEEEEeccCcC
Q 005154 85 YWNKHRINIIDTPGHVD----FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKY--GV-PRICFVNKMDRL 154 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~d----f~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~--~i-p~ivviNK~D~~ 154 (711)
...++.+.||||||... +..+.....+ ..|..++|+|+..|-. ..+++... .+ .--+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d-----~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND-----AVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh-----HHHHHHHHHhcCCCCEEEEeeecCC
Confidence 11457899999999764 3333333322 3589999999977532 22222221 12 346889999975
No 395
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.72 E-value=4.4e-05 Score=75.19 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcce-eeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~-~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
..+++++|.+|+|||||+|+|+.......+ .+. .......|.|.......+. ..+.||||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~----------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDL----------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccc----------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 368999999999999999999843321100 000 0011123567766555542 25899999994
No 396
>PRK12288 GTPase RsgA; Reviewed
Probab=97.71 E-value=4.5e-05 Score=81.94 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
..++++|.+|+|||||+|+|+.. .....+.+.. ...+.+..|.......+..+ ..||||||...|
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~--~~~~t~~is~--------~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPE--AEILVGDVSD--------NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccc--cceeeccccC--------cCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 35899999999999999999722 1122233211 01122234555544444322 359999998876
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=3.7e-05 Score=79.31 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+++|++|+|||||+|+|.- ...-+.+.+.. ...+.+..|..+....+..++ .+|||||+..|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p--~~~~~t~eIS~--------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP--ELNQKTGEISE--------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc--hhhhhhhhhcc--------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 5788999999999999999962 11112222211 111223345555555554333 68999998875
No 398
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.65 E-value=8.4e-05 Score=69.43 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll 45 (711)
+++++|.+|+|||||+|+|+
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999997
No 399
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00047 Score=77.25 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceee-------ee--cCCC---ccccch---hhhhhcC---c-------ee
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EV--HEGT---ATMDWM---EQEQERG---I-------TI 77 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~-------~~--~~g~---~~~d~~---~~e~~~g---i-------ti 77 (711)
....|+|.|.+++||||++|++++..-.....| .+ .+|. ..+|-. ......+ . .-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 357899999999999999999997642111111 01 0111 111110 0000000 0 11
Q ss_pred eeeeEEEEecC-------eeEEEEeCCCCCc---hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EE
Q 005154 78 TSAATTTYWNK-------HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-IC 146 (711)
Q Consensus 78 ~~~~~~~~~~~-------~~i~liDtPG~~d---f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-iv 146 (711)
..+...+.|++ ..+.++|.||..- +...+-.-...+|++|+|+.+-..........+..+.+. .|- +|
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFI 266 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFI 266 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEE
Confidence 12233344432 2689999999753 444455556678999999999766555555556655555 555 55
Q ss_pred EEeccCcCCcc
Q 005154 147 FVNKMDRLGAN 157 (711)
Q Consensus 147 viNK~D~~~~~ 157 (711)
+.||.|....+
T Consensus 267 lnnkwDasase 277 (749)
T KOG0448|consen 267 LNNKWDASASE 277 (749)
T ss_pred Eechhhhhccc
Confidence 67888986543
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00033 Score=75.18 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeeecCCCc-c--ccch-hhhhhcCceeeeeeEE---------EE-ecC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTA-T--MDWM-EQEQERGITITSAATT---------TY-WNK 88 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~~~g~~-~--~d~~-~~e~~~giti~~~~~~---------~~-~~~ 88 (711)
.+.|+++|+.|+||||++..|....... .+.+-++..+. . .+.. ..-..-|+.+...... +. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 4789999999999999999996332111 11221111110 0 0000 0001123333211100 00 024
Q ss_pred eeEEEEeCCCCCch----HHHHHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 89 HRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 89 ~~i~liDtPG~~df----~~~~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+.+.||||||.... ..+....+.. .|-++||+|++.+-... ..+.+.....++ -=++++|+|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~-~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM-IEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH-HHHHHHhcCCCC-CEEEEEcccCCC
Confidence 78999999997543 3444444432 37789999986433221 233333333222 247899999754
No 401
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00016 Score=76.41 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcc--eeeeecCCC---ccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNY--KIGEVHEGT---ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~--~~~~~~~g~---~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
.+++|+|-||+|||||+|+|+....... +..++++.. ...| -+... .+--.....- +....+.|+|.+|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~-L~~~~~c~~k---~~~~~ve~vDIAGL 77 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDE-LAEIVKCPPK---IRPAPVEFVDIAGL 77 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHH-HHHhcCCCCc---EEeeeeEEEEeccc
Confidence 5789999999999999999974442211 111222211 1112 11110 0000010000 11246889999997
Q ss_pred Cc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 005154 100 VD-------FTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 100 ~d-------f~~~~~~~l~~~D~~llvvda~~ 124 (711)
.. .-.+...-+|.+|+++.|||+.+
T Consensus 78 V~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 78 VKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 63 34556778999999999999984
No 402
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00082 Score=62.60 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=50.5
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCeEEEEeccCcCCccHHHHHHHHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 166 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~ivviNK~D~~~~~~~~~~~~l~ 166 (711)
+.+.++|||+..+ ......+..+|.++++++++..-...+...++.+... ..+..+|+|+++... +..+..+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~-~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPK-EGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH-HHHHHHHHHH
Confidence 7899999998654 4456789999999999999754434445555555332 356679999997542 2333444443
No 403
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.60 E-value=0.00021 Score=76.68 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-----------------c
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----------------N 87 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-----------------~ 87 (711)
.+++|+|.||+|||||+++|+..... ..... +.+ |+......+.. .
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~--~~a~y-pft--------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~ 65 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGN--EAANP-PFT--------------TIEPNAGVVNPSDPRLDLLAIYIKPEKVP 65 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcc--ccCCC-CCC--------------CCCCceeEEEechhHHHHHHHHhCCcCcC
Confidence 57899999999999999999633220 11110 111 12222211111 1
Q ss_pred CeeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 005154 88 KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 88 ~~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~~ 124 (711)
...+.++|.||... ........++.+|++++|||+.+
T Consensus 66 ~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 66 PTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 24689999999764 44567888999999999999963
No 404
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.59 E-value=7.5e-05 Score=76.57 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+.++++|++|+|||||+|+|+.... ...+.+.. ...+.+..|.......+ .+ -.|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~--~~t~~i~~--------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK--QQVNDISS--------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh--ccccceec--------cCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 5789999999999999999973221 11222211 00112234555555444 22 389999998764
No 405
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.57 E-value=0.00083 Score=68.20 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=72.6
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHh---cCCcceeeeecCCCccccchhhhhhcCc-----eeeeee---------EEEEec
Q 005154 26 NIGIMAH-IDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGI-----TITSAA---------TTTYWN 87 (711)
Q Consensus 26 ~I~ivG~-~~~GKSTL~~~Ll~~---~g~~~~~~~~~~g~~~~d~~~~e~~~gi-----ti~~~~---------~~~~~~ 87 (711)
.|++.+. -|+||||++-.|... .|...-.-+.|++...+.|.......+. ...... .....+
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 82 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQ 82 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhC
Confidence 4555555 799999999888533 2322223344555444444322111110 000000 001124
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH------hcCCCeEEEEeccCc
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMDR 153 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~------~~~ip~ivviNK~D~ 153 (711)
++.+.||||||+.. ..+..++..+|.+|+.+.++.-.-..+...+..+. ..++|..+++|.++.
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeccc
Confidence 68999999999876 55677899999999998886433323333332222 347788899999973
No 406
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.55 E-value=0.00049 Score=59.99 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCCCeEEEEEEEeecC--------CCCeEEEEEEEeeEeCCCCEEEeCCC------C------ceeecceeEEeccCcee
Q 005154 320 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK------G------KKERIGRLLEMHANSRE 379 (711)
Q Consensus 320 ~~~p~~~~V~k~~~~~--------~~g~l~~~RV~sG~l~~gd~v~~~~~------~------~~~~v~~i~~~~g~~~~ 379 (711)
.+.|+.|+|.+++... .+|.++-|++.+|.|+.||+|.+.+- + ...+|.+|+.. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~----~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE----NN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec----Cc
Confidence 4678889998887754 77899999999999999999975421 1 12345555433 36
Q ss_pred ecCeeecCCEEEE-eCCCc-cccCccc
Q 005154 380 DVKVALAGDIIAL-AGLKD-TITGETL 404 (711)
Q Consensus 380 ~v~~a~aGdIv~i-~gl~~-~~~Gdtl 404 (711)
.+++|.||+.++| ++|+- +.++|.+
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred cccEEeCCCeEEEccccCcccccccee
Confidence 7999999999999 55543 3333443
No 407
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.53 E-value=0.00044 Score=66.65 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=51.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~ 154 (711)
.++.+.++|||+... ......+ ..+|.+++|+.+...-...+...++.+.+.+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 578999999999754 3333333 57899999999887666677788888888899876 679999863
No 408
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.53 E-value=0.00047 Score=59.31 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=63.5
Q ss_pred EEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCcc
Q 005154 325 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 403 (711)
Q Consensus 325 ~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdt 403 (711)
.++|.....+++.|.++.+-|.+|+|++||.+...... .||+.++...| .++++|.||+.+-|.|++++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 46788888899999999999999999999999876533 37777776665 67999999999999999875 67876
Q ss_pred ccC
Q 005154 404 LCD 406 (711)
Q Consensus 404 l~~ 406 (711)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 643
No 409
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.53 E-value=0.00038 Score=65.00 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~ivviNK~D~~~ 155 (711)
.++.+++..+|++++|+|+..+...+...+.+.+... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 4678899999999999999988877777777777665 899999999999864
No 410
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.53 E-value=0.00023 Score=74.50 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+..+++++|.+|+|||||+|+|+.... ...+. ..|.|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~--~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV--AKVGN---------------RPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--cccCC---------------CCCeecceEEEEe---CCCEEEEECCCc
Confidence 357899999999999999999962211 11111 1244554443332 236899999997
No 411
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.52 E-value=0.00017 Score=69.83 Aligned_cols=57 Identities=21% Similarity=0.115 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
...+++++|.+|+|||||+|+|+.... .. ... ..|.|.......+. ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~--~~-~~~--------------~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV--AK-VGN--------------KPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--ee-ecC--------------CCCEEeeeEEEEec---CCEEEEECCCC
Confidence 357899999999999999999973211 01 110 11335554444332 56899999996
No 412
>PRK12289 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.00042 Score=74.55 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHhcCeEEEEEeCCCCC-Ch-hHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 109 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~-~~-~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+++.+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+..
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 588999999999998543 33 234555566678999999999999864
No 413
>PRK12289 GTPase RsgA; Reviewed
Probab=97.49 E-value=0.00011 Score=78.96 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
.++|+|.+|+|||||+|+|+.... ...+.+.. ...+.|..|.......+.- + ..||||||...|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~--~~t~~vs~--------~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE--LRVGKVSG--------KLGRGRHTTRHVELFELPN-G--GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc--cccccccC--------CCCCCCCcCceeEEEECCC-C--cEEEeCCCcccc
Confidence 589999999999999999972211 11222211 0111223344443333321 2 279999998765
No 414
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.46 E-value=0.0014 Score=70.42 Aligned_cols=139 Identities=22% Similarity=0.219 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee--cCCCccccchhhhhhcCc-------eee--eeeEEEE------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGI-------TIT--SAATTTY------ 85 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~--~~g~~~~d~~~~e~~~gi-------ti~--~~~~~~~------ 85 (711)
+++...+.|..|+|||||+++|+...... +..-+ +-|..-.|..-... .++ .+. ..++...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~-~iavi~Ne~G~~~ID~~ll~~-~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGR-RIAVIVNEFGDLGIDGEILKA-CGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCC-cEEEEECCCccccchHHHHhc-cccccCCcceEEEeCCCCccccCcHHHH
Confidence 46778899999999999999998643211 11111 22222233222211 111 000 1000000
Q ss_pred ---------ecCeeEEEEeCCCCCchHHHHHHHH--------HhcCeEEEEEeCCCCCChh-------------------
Q 005154 86 ---------WNKHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQ------------------- 129 (711)
Q Consensus 86 ---------~~~~~i~liDtPG~~df~~~~~~~l--------~~~D~~llvvda~~g~~~~------------------- 129 (711)
.......+|.|.|..+....+ ..+ -..|++|-|||+.......
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~-~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLALPKPLV-QAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLD 159 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCHHHHH-HHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccc
Confidence 023578899999998854333 322 1348999999997543110
Q ss_pred -----HHHHHHHHHhcCCCeEEEEeccCcCCcc-HHHHHHHHHH
Q 005154 130 -----SETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVT 167 (711)
Q Consensus 130 -----t~~~~~~~~~~~ip~ivviNK~D~~~~~-~~~~~~~l~~ 167 (711)
......|+. .--+|++||+|+...+ +.+..+.+++
T Consensus 160 ~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 160 HETPLEELFEDQLA---CADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred ccchHHHHHHHHHH---hCCEEEEeccccCCHHHHHHHHHHHHH
Confidence 011123333 2358999999998754 4444445544
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00048 Score=73.67 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeee--cCCCc--cccchhhhhhcCceeeeeeE--EE-------E-e
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEV--HEGTA--TMDWMEQEQERGITITSAAT--TT-------Y-W 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~--~~g~~--~~d~~~~e~~~giti~~~~~--~~-------~-~ 86 (711)
.+.+.++++|+.|+||||++..|....... .+.+-+ |+... ...+...-..-|+.+....- .+ . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 456889999999999999999997433111 122222 11110 00111111122332221100 00 0 0
Q ss_pred cCeeEEEEeCCCCCch----HHHHHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHHhc-CCC-eEEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKY-GVP-RICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df----~~~~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~~~-~ip-~ivviNK~D~~ 154 (711)
.++.+.||||||.... ..++...... .|.+++|+++.. ..+. ....+..+ .++ --+++||+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 3579999999998543 3333333332 266677877632 2222 22222222 233 35779999975
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.46 E-value=0.0011 Score=70.51 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcce-eeeecCCCccccchhhhhhcC--ceeeeeeEEEEec------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERG--ITITSAATTTYWN------------ 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~-~~~~~~g~~~~d~~~~e~~~g--iti~~~~~~~~~~------------ 87 (711)
+++...|.|..|||||||+++|+......+- .-.-+-|..-.|..-.+.... .++...++.....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 4788899999999999999999855321111 000012223333322221100 1111122221110
Q ss_pred -------CeeEEEEeCCCCCchHHHHHHHH-H--------hcCeEEEEEeCCCCCChhH--HHHHHHHHhcCCCeEEEEe
Q 005154 88 -------KHRINIIDTPGHVDFTLEVERAL-R--------VLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVN 149 (711)
Q Consensus 88 -------~~~i~liDtPG~~df~~~~~~~l-~--------~~D~~llvvda~~g~~~~t--~~~~~~~~~~~ip~ivviN 149 (711)
.....+|.|.|..+-.... ..+ . ..|+++.|||+........ .....|+. .--++++|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~-~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~Ivln 158 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPII-QTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLT 158 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHH-HHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEEe
Confidence 2567899999998743332 222 1 2489999999986432211 11223333 23589999
Q ss_pred ccCcCCccHHHHHHHHHH
Q 005154 150 KMDRLGANFFRTRDMIVT 167 (711)
Q Consensus 150 K~D~~~~~~~~~~~~l~~ 167 (711)
|+|+.... .+..+.+++
T Consensus 159 K~Dl~~~~-~~~~~~l~~ 175 (318)
T PRK11537 159 KTDVAGEA-EKLRERLAR 175 (318)
T ss_pred ccccCCHH-HHHHHHHHH
Confidence 99998643 344444443
No 417
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.44 E-value=0.00023 Score=74.84 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+..+++++|.+|+|||||+|+|+.... ...+. ..|+|.......+ +..+.|+||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~--~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI--AKTGN---------------RPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc--cccCC---------------CCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 356899999999999999999962211 11111 1255665543322 34689999999753
No 418
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.43 E-value=0.00034 Score=71.73 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHhcCeEEEEEeCCCCC-Ch-hHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 107 ERALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 107 ~~~l~~~D~~llvvda~~g~-~~-~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
...++.+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+..
T Consensus 31 r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 31 RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 34789999999999998644 33 233444556668999999999999854
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.41 E-value=0.0013 Score=72.64 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCC-ccccchh-hhhhcCceeeeeeE-----E--------E
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAAT-----T--------T 84 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~-~~~d~~~-~e~~~giti~~~~~-----~--------~ 84 (711)
...+.++|++|+||||++-.|.... |........|... ...+... ....-|+.+..... . .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999988886442 2211111111100 0001000 11222333222110 0 0
Q ss_pred EecCeeEEEEeCCCCCchHHHHHHH------HHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCcc
Q 005154 85 YWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN 157 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df~~~~~~~------l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~~ 157 (711)
..+++.+.||||||........... ....|.+++|+|+..+- .......... ..+++ =+++||+|....
T Consensus 179 ~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~-~~v~i~giIlTKlD~~~~- 254 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFN-ERLGLTGVVLTKLDGDAR- 254 (428)
T ss_pred HhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHH-hhCCCCEEEEeCccCccc-
Confidence 1145789999999964332222221 22358899999997541 2222222221 22343 467999995321
Q ss_pred HHHHHHHHHHHhCC
Q 005154 158 FFRTRDMIVTNLGA 171 (711)
Q Consensus 158 ~~~~~~~l~~~l~~ 171 (711)
.-.+.++...++.
T Consensus 255 -~G~~lsi~~~~~~ 267 (428)
T TIGR00959 255 -GGAALSVRSVTGK 267 (428)
T ss_pred -ccHHHHHHHHHCc
Confidence 1124455555554
No 420
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.41 E-value=0.00019 Score=75.40 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+.++++|++|+|||||+|+|+.... ...|.+.. ...+.++.|.......+.. ...++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~--~~~g~v~~--------~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD--LATGEISE--------KLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh--ccccceec--------cCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 6799999999999999999962211 11122110 0112233455544444422 2379999999876
No 421
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.40 E-value=0.001 Score=58.33 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=64.9
Q ss_pred EEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCc--eeecceeEEeccC-------ceeecCeee--cCCEEEEeC
Q 005154 326 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALAG 394 (711)
Q Consensus 326 ~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~--~~~v~~i~~~~g~-------~~~~v~~a~--aGdIv~i~g 394 (711)
+.|.....+++.|.++..-|++|+|++||.|.....+. ..||+.++...+. .+.+++++. +|--+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 56777888999999999999999999999999876653 3588888888773 445788877 787787889
Q ss_pred CCccccCcccc
Q 005154 395 LKDTITGETLC 405 (711)
Q Consensus 395 l~~~~~Gdtl~ 405 (711)
|+++..|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 99888887654
No 422
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.39 E-value=0.00026 Score=68.31 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=53.0
Q ss_pred CeeEEEEeCCCCCc------hHHHHHHHHHhc---CeEEEEEeCCCCCCh-----hHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 88 KHRINIIDTPGHVD------FTLEVERALRVL---DGAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 88 ~~~i~liDtPG~~d------f~~~~~~~l~~~---D~~llvvda~~g~~~-----~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
+-.+.++|+||++. ...+..+.+... -++++++|+.--+.. .....+.......+|.|=|++|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 34788999999664 466667777664 467778887532221 1223334445678999999999999
Q ss_pred CCccHHHHHHHHHHHhCC
Q 005154 154 LGANFFRTRDMIVTNLGA 171 (711)
Q Consensus 154 ~~~~~~~~~~~l~~~l~~ 171 (711)
... ...+++.+.|..
T Consensus 177 lk~---~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 177 LKD---KNKKELERFLNP 191 (273)
T ss_pred hhh---hhHHHHHHhcCC
Confidence 765 345566665544
No 423
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.38 E-value=0.0025 Score=56.36 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=44.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC----CeEEEEec
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV----PRICFVNK 150 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i----p~ivviNK 150 (711)
.+.++|||+..+. .....+..+|.+++++++...-........+.+.+.+. ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997763 45678899999999999986655566666666666554 45578886
No 424
>PRK13796 GTPase YqeH; Provisional
Probab=97.36 E-value=0.00032 Score=76.29 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc-CCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~-g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+++.++|.+|+|||||+|+|+... +..... . .....|.|.......+ .+ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~-~------------~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVI-T------------TSRFPGTTLDKIEIPL--DD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceE-E------------ecCCCCccceeEEEEc--CC-CcEEEECCCcc
Confidence 3589999999999999999998543 211111 0 1112355665544433 22 24899999975
No 425
>PHA02518 ParA-like protein; Provisional
Probab=97.36 E-value=0.002 Score=64.25 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=68.3
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHh---cCCcceeeeecCCCccccchhhhhhcC--ceeeeeeEEE------EecCeeEEE
Q 005154 26 NIGIMAH-IDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERG--ITITSAATTT------YWNKHRINI 93 (711)
Q Consensus 26 ~I~ivG~-~~~GKSTL~~~Ll~~---~g~~~~~~~~~~g~~~~d~~~~e~~~g--iti~~~~~~~------~~~~~~i~l 93 (711)
.|++.+. -|+||||++-.|-.. .|...-.-+.++.....+|........ +........+ ....+.+.|
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~vi 81 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVV 81 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEE
Confidence 4566655 679999999887432 232222223344433344432111111 1100000000 014579999
Q ss_pred EeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHH---HHHHHh--cCCCeE-EEEeccCcCC
Q 005154 94 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV---WRQADK--YGVPRI-CFVNKMDRLG 155 (711)
Q Consensus 94 iDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~---~~~~~~--~~ip~i-vviNK~D~~~ 155 (711)
|||||..+ ..+..++..+|.+|+++.++.--....... ++.... .+.|.+ ++.|+.+...
T Consensus 82 iD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~ 147 (211)
T PHA02518 82 VDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNT 147 (211)
T ss_pred EeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcc
Confidence 99999754 557789999999999999875332222223 332221 245554 5667766443
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.00089 Score=66.17 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=48.8
Q ss_pred CeeEEEEeCC-CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcC-CCeEEEEeccCcC
Q 005154 88 KHRINIIDTP-GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 154 (711)
Q Consensus 88 ~~~i~liDtP-G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~-ip~ivviNK~D~~ 154 (711)
.+.+.++||= |.+.|... ..+.+|.+|+|+|++..--...+.+-+++.+.+ .++.+|+||.|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4678899984 66666643 456789999999998654455566777788889 6677889999965
No 427
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.32 E-value=0.00063 Score=71.52 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHhcCeEEEEEeCCCCC-Chh-HHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 109 ALRVLDGAICLFDSVAGV-EPQ-SETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~-~~~-t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+..+|.+++|+|+.++. ... ...++..+...++|+++|+||+|+..
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 467889999999998775 332 23445556678999999999999864
No 428
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.017 Score=62.43 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCC-cceeeeecCCC-c--cccchh-hhhhcCceeeeeeE-------------EE
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGT-A--TMDWME-QEQERGITITSAAT-------------TT 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~-~~~~~~~~~g~-~--~~d~~~-~e~~~giti~~~~~-------------~~ 84 (711)
+.-.|.++|--|+||||.+..|.++... -.++.-+...+ + ..|... .-.+-|+.+..... .+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998643221 11111111100 0 000000 11122222222100 00
Q ss_pred EecCeeEEEEeCCCCCc----hHHHHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcC
Q 005154 85 YWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 154 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~d----f~~~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~ 154 (711)
..+.+.+.|+||+|-.. ...|+...- -.-|=+++|+|+..|-.... ...+-...+++ =++++|+|-.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~---~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN---TAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH---HHHHHhhhcCCceEEEEcccCC
Confidence 11457999999999443 333333222 23488999999987754322 12222334555 3789999964
No 429
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.31 E-value=0.0026 Score=67.51 Aligned_cols=127 Identities=23% Similarity=0.230 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcc------eeeee--cCCCccccchhhhhhcCceeeeeeEEEE----------
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNY------KIGEV--HEGTATMDWMEQEQERGITITSAATTTY---------- 85 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~------~~~~~--~~g~~~~d~~~~e~~~giti~~~~~~~~---------- 85 (711)
++...|.|.-|||||||+++|+.+....+ ..|++ +.+....+. .+.=..+...++...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~----~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDT----GEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccC----CccEEEeCCceEEEeccchhHHHHH
Confidence 35677999999999999999996655221 12222 111111110 000011112222222
Q ss_pred -----ecCeeEEEEeCCCCCchHHHHHHHH--------HhcCeEEEEEeCCCCCChhH---HHHHHHHHhcCCCeEEEEe
Q 005154 86 -----WNKHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQS---ETVWRQADKYGVPRICFVN 149 (711)
Q Consensus 86 -----~~~~~i~liDtPG~~df~~~~~~~l--------~~~D~~llvvda~~g~~~~t---~~~~~~~~~~~ip~ivviN 149 (711)
..+....+|-|-|..+=...+.... -..|++|-|||+........ .....|+.-. =++++|
T Consensus 77 ~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlN 153 (323)
T COG0523 77 RLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLN 153 (323)
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEe
Confidence 1346788999999887433332222 23488999999997655432 3444444433 489999
Q ss_pred ccCcCCcc
Q 005154 150 KMDRLGAN 157 (711)
Q Consensus 150 K~D~~~~~ 157 (711)
|.|+...+
T Consensus 154 K~Dlv~~~ 161 (323)
T COG0523 154 KTDLVDAE 161 (323)
T ss_pred cccCCCHH
Confidence 99998866
No 430
>PRK00098 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00074 Score=71.41 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHhcCeEEEEEeCCCCCCh--hHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 109 ALRVLDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~~~--~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.++.+|.+++|+|+.+.... ....++..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 46889999999999754322 22344555677899999999999985
No 431
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.30 E-value=0.00028 Score=75.23 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=38.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+++++|-+|+|||||+|+|+..... ..+. . .|+|.....+.+. ..+.|+||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~--~~s~-~--------------PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVA--KTSN-R--------------PGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccce--eeCC-C--------------CceecceEEEEcC---CCeEEecCCCcC
Confidence 356999999999999999999733321 1111 1 2556555544442 459999999965
No 432
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.29 E-value=0.00098 Score=66.30 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch--
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df-- 102 (711)
-.++++|.|.+|||||+..|. |..+...+ + .+.|.........+++-++++.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vas---y------------efttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAA---Y------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCcccc---c------------cceeEEEecceEeccccceeeecCcchhcccc
Confidence 478999999999999999994 43332211 1 123555555666778899999999997752
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCC
Q 005154 103 -----TLEVERALRVLDGAICLFDSVAGVE 127 (711)
Q Consensus 103 -----~~~~~~~l~~~D~~llvvda~~g~~ 127 (711)
-.+++...|-|.++++|.|+...+.
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLS 151 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCccc
Confidence 3456777888999999999987654
No 433
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.28 E-value=0.001 Score=73.02 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcc-----------eeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-----------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH 89 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~-----------~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~ 89 (711)
+...++|+|+|++++|||||+++|....|... ..+.......+.|+.+....+...+..... ...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~----~a~ 291 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVK----YAN 291 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHH----hcC
Confidence 34579999999999999999999987766541 122222233445655544433333322211 124
Q ss_pred eEEEEeCCCCC----------chHHHHHHHHH--hcCeEEEEEeCC-----CCCC----hhH-----HHHHHHHHhcCCC
Q 005154 90 RINIIDTPGHV----------DFTLEVERALR--VLDGAICLFDSV-----AGVE----PQS-----ETVWRQADKYGVP 143 (711)
Q Consensus 90 ~i~liDtPG~~----------df~~~~~~~l~--~~D~~llvvda~-----~g~~----~~t-----~~~~~~~~~~~ip 143 (711)
.++|+||--.. .-...+...++ ..|.++ +++.. +|.. ... ..+.+.+.+.|.|
T Consensus 292 ~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDlvl-ll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g~~ 370 (399)
T PRK08099 292 KVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLTI-LLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENNIE 370 (399)
T ss_pred CeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCEEE-EcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 69999997422 11122333333 247544 44443 2222 111 2233445678999
Q ss_pred eEEEEeccCcCCccHHHHHHHHHHHhC
Q 005154 144 RICFVNKMDRLGANFFRTRDMIVTNLG 170 (711)
Q Consensus 144 ~ivviNK~D~~~~~~~~~~~~l~~~l~ 170 (711)
.+.+ ++-|. ..++.+.++.+.+.+.
T Consensus 371 ~v~l-~~g~~-~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 371 YVHV-ESPDY-DKRYLRCVELVDQMLG 395 (399)
T ss_pred EEEE-CCCCH-HHHHHHHHHHHHHHhh
Confidence 5555 44332 2445666666666554
No 434
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.25 E-value=0.0013 Score=70.29 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeee--------eEEEEe---cCeeEEE
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------ATTTYW---NKHRINI 93 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~--------~~~~~~---~~~~i~l 93 (711)
.-|+++|++-+|||||+.++....-. ....+.....+..|-.|+.. .|-||... .+.+.. -..++-|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~Vl-PnI~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVL-PNIEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcC-CCCCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 56999999999999999999744321 11111111112223222221 12222211 111222 2357889
Q ss_pred EeCCCCC--------c-----------------hHHHHHHHHHhc------CeEEEEEeCCCCCC------hhHHHHHHH
Q 005154 94 IDTPGHV--------D-----------------FTLEVERALRVL------DGAICLFDSVAGVE------PQSETVWRQ 136 (711)
Q Consensus 94 iDtPG~~--------d-----------------f~~~~~~~l~~~------D~~llvvda~~g~~------~~t~~~~~~ 136 (711)
|||-|+. + |.....-+-+.. =|+++--|++-+-- ...+.+.+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9999853 1 333333333321 35556667663322 234567788
Q ss_pred HHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 137 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 137 ~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
++..++|+++++|-.+-...+-.++.+++.++++...+|+..
T Consensus 176 Lk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 176 LKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 899999999999999877777788899999999988776643
No 435
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00092 Score=72.70 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCCc-cccchhhh-hhcCceeeeeeE------EEEecCeeE
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWMEQE-QERGITITSAAT------TTYWNKHRI 91 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~~-~~d~~~~e-~~~giti~~~~~------~~~~~~~~i 91 (711)
...++++|.+|+||||++..|.... |......+.|.... ..+..... ...|+....... .+...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999997432 11111111111100 00111111 112332211100 001146789
Q ss_pred EEEeCCCCCch----HHHHHHHHHh-----cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 92 NIIDTPGHVDF----TLEVERALRV-----LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 92 ~liDtPG~~df----~~~~~~~l~~-----~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.||||||.... ..++...++. ..-.+||+|++.+.... ....+.-...+ +-=++++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 99999997632 2233333332 23578999998764332 22222222222 235789999974
No 436
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0022 Score=70.37 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc--C-CcceeeeecCCCcc---ccch-hhhhhcCceeeeeeEE-------EEec
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT--G-RNYKIGEVHEGTAT---MDWM-EQEQERGITITSAATT-------TYWN 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~--g-~~~~~~~~~~g~~~---~d~~-~~e~~~giti~~~~~~-------~~~~ 87 (711)
.+...|+++|..|+||||++..|.... . .....+-+...+.. .+.. ..-+..|+.+...... ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 345789999999999999999886432 1 01112211111110 0111 0112224443322111 1125
Q ss_pred CeeEEEEeCCCCCchHHHHHH---HHHh---cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDFTLEVER---ALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~---~l~~---~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~ 155 (711)
++.+.+|||+|.......... .+.. .+-.+||+|++.+.... ..+...... +++ =+++||+|-..
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~~--~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQG--HGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhcC--CCCCEEEEEeeeCCC
Confidence 778999999997654332222 2222 24568999998543222 122222222 333 46889999753
No 437
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.23 E-value=0.0055 Score=62.90 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=55.7
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~~~~~l 165 (711)
+++.+.+||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+.+.+ +++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 358999999998765 356677889999999999875443444455555666777754 789999864322 123455
Q ss_pred HHHhCCc
Q 005154 166 VTNLGAK 172 (711)
Q Consensus 166 ~~~l~~~ 172 (711)
.+.++..
T Consensus 183 ~~~~~~~ 189 (251)
T TIGR01969 183 ETILEVP 189 (251)
T ss_pred HHhhCCc
Confidence 5555553
No 438
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.22 E-value=0.001 Score=64.77 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH-hcCCcceeeee--cCCCccccchhhhhhcCceee---eeeEEEE-------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLF-YTGRNYKIGEV--HEGTATMDWMEQEQERGITIT---SAATTTY------------- 85 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~-~~g~~~~~~~~--~~g~~~~d~~~~e~~~giti~---~~~~~~~------------- 85 (711)
+.+.|.|..|||||||+++|+. .... .+.+-+ +-|....|....+. .|+++. .......
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~-~~~~vI~ne~g~~~iD~~~l~~-~~~~v~~l~~gcicc~~~~~~~~~l~~l~ 78 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQG-ERVAVIVNEFGEVNIDAELLQE-DGVPVVELNNGCICCTLRDDLVEALRRLL 78 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTT-S-EEEEECSTTSTHHHHHHHHT-TT-EEEEECTTTESS-TTS-HHHHHHHHC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCC-ceeEEEEccccccccchhhhcc-cceEEEEecCCCcccccHHHHHHHHHHHH
Confidence 3567999999999999999994 2221 111111 22222222222211 132211 1111000
Q ss_pred -ec--CeeEEEEeCCCCCchHHH-----HHHHHHhcCeEEEEEeCCCCCChh--HHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 86 -WN--KHRINIIDTPGHVDFTLE-----VERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 86 -~~--~~~i~liDtPG~~df~~~-----~~~~l~~~D~~llvvda~~g~~~~--t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.. ...+.||-|.|..+...- .....-..+.++.|+|+..-.... ...+..++ ..--++++||+|+..
T Consensus 79 ~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 79 REYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVIVLNKIDLVS 155 (178)
T ss_dssp CCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEEEEE-GGGHH
T ss_pred HhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEEEEeccccCC
Confidence 02 457899999997764333 111223349999999996531111 12222333 334589999999987
Q ss_pred cc
Q 005154 156 AN 157 (711)
Q Consensus 156 ~~ 157 (711)
.+
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 439
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.21 E-value=0.0013 Score=71.41 Aligned_cols=55 Identities=18% Similarity=0.026 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 346777666677888999999999876655555554443 2689999999999864
No 440
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.19 E-value=0.00056 Score=64.92 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...+++++|.+|+|||||+|+|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35678999999999999999996
No 441
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.18 E-value=0.0031 Score=63.18 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=50.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHH--HHhcCeEEEEEeCCCCCChhHHHHHHHHHh---c-CCCeE-EEEeccCcCCccHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADK---Y-GVPRI-CFVNKMDRLGANFF 159 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~--l~~~D~~llvvda~~g~~~~t~~~~~~~~~---~-~ip~i-vviNK~D~~~~~~~ 159 (711)
+.+.+.||||||......- ... ++.+|.+++++++..--..-...+++.+.. . +.+.. +++||+|.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 4689999999986531111 112 348999999998863221112233333332 2 44443 789999964 223
Q ss_pred HHHHHHHHHhCCcce
Q 005154 160 RTRDMIVTNLGAKPL 174 (711)
Q Consensus 160 ~~~~~l~~~l~~~~~ 174 (711)
+.++++.+.++...+
T Consensus 192 ~~~~~~~~~~~~~vl 206 (212)
T cd02117 192 ELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHcCCCEE
Confidence 466777777776543
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.003 Score=65.40 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=66.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCC-cceeeeecCCCc---cccch-hhhhhcCceeeeeeEE---------E-Eec
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA---TMDWM-EQEQERGITITSAATT---------T-YWN 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~-~~~~~~~~~g~~---~~d~~-~~e~~~giti~~~~~~---------~-~~~ 87 (711)
+...++++|.+|+||||++..|...... ....+-+..... ..+.. ..-...|+.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3479999999999999999988644211 112222211110 00000 0011123322211000 0 013
Q ss_pred CeeEEEEeCCCCCch----HHHHHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df----~~~~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
++.+.||||||.... ..++...++. .|-+++|+|++..... ...+.+.....+ +-=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d-~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH-HHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 579999999997743 3333333332 3678999998753222 122222222222 2247899999754
No 443
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.15 E-value=0.0006 Score=69.97 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-h
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-F 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d-f 102 (711)
..++.|+|-||+|||||+|++............+ | .+.|+|+..+....-.+...++++||||..- -
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~v--G----------~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARV--G----------AEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceec--c----------CCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 5789999999999999999997554443332222 1 2458888877654445667899999999542 2
Q ss_pred HHHHHHHHHhc
Q 005154 103 TLEVERALRVL 113 (711)
Q Consensus 103 ~~~~~~~l~~~ 113 (711)
+...+.+++.+
T Consensus 211 I~~~e~~lKLA 221 (335)
T KOG2485|consen 211 IVDVEDGLKLA 221 (335)
T ss_pred CCCHHHhhhhh
Confidence 22344444443
No 444
>PRK00098 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.00065 Score=71.84 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..++++|++|+|||||+|+|+
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999996
No 445
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0021 Score=71.16 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC---Ccceeeee--cCCCc-cccchh-hhhhcCceeeeeeEEE-------EecCe
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEV--HEGTA-TMDWME-QEQERGITITSAATTT-------YWNKH 89 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g---~~~~~~~~--~~g~~-~~d~~~-~e~~~giti~~~~~~~-------~~~~~ 89 (711)
.++++++|++|+||||++-.|..... .-.+.+-+ ++... ..+... .-...|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 56899999999999999998863321 11122222 11100 000000 0111233222111100 12468
Q ss_pred eEEEEeCCCCCchH----HHHHHHHH---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 90 RINIIDTPGHVDFT----LEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 90 ~i~liDtPG~~df~----~~~~~~l~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.+.||||||...+. .++...+. .-+-+.+|++++.+.. ....+++.....++ -=+++||+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 99999999986542 23333333 2246688899875432 22333444333332 25889999974
No 446
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.13 E-value=0.0047 Score=61.47 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=52.2
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 155 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~ 155 (711)
..+.+.|||||..... .......+.+|.+|+|+++...-........+.+...+.+++ +|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 3588999999974322 233445577999999999987767777788888888888876 6899999754
No 447
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.08 E-value=0.0017 Score=67.35 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------------- 86 (711)
+...++|+|-+|+|||||+|+|+...-. ++.. +- .||+...+....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~---~~Nf-PF--------------~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG---AANF-PF--------------CTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC---ccCC-Cc--------------ceeccccceeecCchHHHHHHHhcCCcc
Confidence 4678999999999999999999732211 1111 10 123322222221
Q ss_pred -cCeeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 005154 87 -NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 87 -~~~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~~ 124 (711)
-.-.+++.|.+|... .-.....-+|.+|+++.||++.+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 124689999999663 33446677899999999999974
No 448
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.06 E-value=0.0012 Score=70.36 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=61.9
Q ss_pred CceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-----------hhHHHHHHHHHh---
Q 005154 74 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK--- 139 (711)
Q Consensus 74 giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-----------~~t~~~~~~~~~--- 139 (711)
-.|.......+.+++..+.+||++|+......+......++++++|+|.++.-+ ......++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 334455555677789999999999999999999999999999999999986421 112233333322
Q ss_pred -cCCCeEEEEeccCcCC
Q 005154 140 -YGVPRICFVNKMDRLG 155 (711)
Q Consensus 140 -~~ip~ivviNK~D~~~ 155 (711)
.++|+++++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 4789999999999864
No 449
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.008 Score=65.51 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=68.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCC-----ccee--eeecCCC-ccccchhh-hhhcCceeeeeeEE-------EEe
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGR-----NYKI--GEVHEGT-ATMDWMEQ-EQERGITITSAATT-------TYW 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~-----~~~~--~~~~~g~-~~~d~~~~-e~~~giti~~~~~~-------~~~ 86 (711)
+.+.|+++|+.|+||||.+..|...... -..+ .+.+... ...+.... -..-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3578999999999999999988643211 0111 1111110 00000110 11123332211110 012
Q ss_pred cCeeEEEEeCCCCCch----HHHHHHHHHhc--C-eEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df----~~~~~~~l~~~--D-~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.++.+.||||||.... ..++...+..+ + -.+||+|++.+..... .++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 5789999999996542 33444455543 3 5889999988743332 3333322222 335789999974
No 450
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.02 E-value=0.0075 Score=62.86 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=48.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHH----HhcCCCeE-EEEeccCcCCccHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRT 161 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~----~~~~ip~i-vviNK~D~~~~~~~~~ 161 (711)
+++.+.||||||..... .+..++..+|.+|+++.+..---......++.+ ...+++.+ +++|+.+. ...
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 45889999999865321 234568899999999977532111122222222 24566654 78999773 233
Q ss_pred HHHHHHHhCCcc
Q 005154 162 RDMIVTNLGAKP 173 (711)
Q Consensus 162 ~~~l~~~l~~~~ 173 (711)
++++.+.++...
T Consensus 190 ~~~~~~~~g~~v 201 (270)
T PRK13185 190 IDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHcCCCE
Confidence 455566666543
No 451
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.01 E-value=0.002 Score=69.14 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC---CcceeeeecCCCccccchh---hhhh------cCceeeeeeEEE------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWME---QEQE------RGITITSAATTT------ 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g---~~~~~~~~~~g~~~~d~~~---~e~~------~giti~~~~~~~------ 84 (711)
+.+.|+++|++|+||||.+-.|.+... ...+.+- .++|.+. .|+- -|+++......-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVai-----ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAI-----ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEE-----EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 479999999999999999999864433 1112221 2334332 2222 234433322211
Q ss_pred -EecCeeEEEEeCCCCCch----HHHHHHHHHhc--CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 85 -YWNKHRINIIDTPGHVDF----TLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 85 -~~~~~~i~liDtPG~~df----~~~~~~~l~~~--D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+.++.+.||||.|+... +.++...+..+ .-..||++++.-- ....+++.+....++. =+++||+|-..
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 125789999999997643 44444455444 4556788876421 1122333333333332 35689999754
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.00 E-value=0.0033 Score=70.12 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCCc---cccchh-hhhhcCceeeeeeEE-------EEec
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA---TMDWME-QEQERGITITSAATT-------TYWN 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~~---~~d~~~-~e~~~giti~~~~~~-------~~~~ 87 (711)
+...++++|..|+||||++..|.... |. .+++-+...+. ..+... .-...|+.+...... ....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 34789999999999999999997432 21 12222211110 000011 113334433221111 1225
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHH-hcCe-----EEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 88 KHRINIIDTPGHVDFTLEVERALR-VLDG-----AICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~-~~D~-----~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
++.+.+|||+|.......+...+. ..+. .++|+|++.+... ...........+ ..-+++||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 678999999995433222222222 1222 6899999764422 112222222222 334678999965
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.0028 Score=68.70 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHhcCeEEEEEeCCCCCCh-hHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 110 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 110 l~~~D~~llvvda~~g~~~-~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+.++|.+++|+++...+.. .....+..+...++|.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 4678999999999876666 455677778889999999999999964
No 454
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.99 E-value=0.00089 Score=65.82 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=71.1
Q ss_pred EEEEcCCCCCHHHHHHHHHH---hcCCcceeeeecCCCccccchh------------hhhhcCceee--------eeeEE
Q 005154 27 IGIMAHIDAGKTTTTERVLF---YTGRNYKIGEVHEGTATMDWME------------QEQERGITIT--------SAATT 83 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~---~~g~~~~~~~~~~g~~~~d~~~------------~e~~~giti~--------~~~~~ 83 (711)
.+|+|+||+||||.++.+.. ..|....+...++++..+.+.. ...+.|.--. .-...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 46899999999999987753 3344334455566653332211 0111111000 00001
Q ss_pred EEe-------cCeeEEEEeCCCCCch------HHHHHHHHHhcCeEEE---EEeCCCCCChh-----HHHHHHHHHhcCC
Q 005154 84 TYW-------NKHRINIIDTPGHVDF------TLEVERALRVLDGAIC---LFDSVAGVEPQ-----SETVWRQADKYGV 142 (711)
Q Consensus 84 ~~~-------~~~~i~liDtPG~~df------~~~~~~~l~~~D~~ll---vvda~~g~~~~-----t~~~~~~~~~~~i 142 (711)
++| ....+.++|+||+.++ ...+.+.++..|.-+. ++|+.---.+. ....+.-...+..
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 122 2467899999997754 4556677777665444 45554111111 1112233345789
Q ss_pred CeEEEEeccCcCC
Q 005154 143 PRICFVNKMDRLG 155 (711)
Q Consensus 143 p~ivviNK~D~~~ 155 (711)
|.+=|+.|+|+..
T Consensus 165 phVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHVNVLSKADLLK 177 (290)
T ss_pred cchhhhhHhHHHH
Confidence 9999999999864
No 455
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0041 Score=62.50 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~ 100 (711)
-..||..+|.+|-|||||++.|+...-...+..... .++..+.....+.-. ..+++++||.|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~--------------~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTL--------------PNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCC--------------CCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 358999999999999999999974332221111110 111122221111111 2478999999987
Q ss_pred c-------------hH-HHHH----------HHHH-----hcCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEec
Q 005154 101 D-------------FT-LEVE----------RALR-----VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 150 (711)
Q Consensus 101 d-------------f~-~~~~----------~~l~-----~~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK 150 (711)
| |+ .+.. +++. ...+++..|.++ ++......-.++.+. .++.+|-+|-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHH
Confidence 5 11 1111 2221 226777777776 455444443333332 35677888999
Q ss_pred cCcCCcc-HHHHHHHHHHHhCCc-ceEEEeccC
Q 005154 151 MDRLGAN-FFRTRDMIVTNLGAK-PLVVQLPVG 181 (711)
Q Consensus 151 ~D~~~~~-~~~~~~~l~~~l~~~-~~~~~~p~~ 181 (711)
.|....+ +......+...|..+ .-..++|..
T Consensus 186 aDtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 186 ADTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 9987643 555555565555433 334566754
No 456
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.97 E-value=0.012 Score=61.13 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=48.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHH----HhcCCCeE-EEEeccCcCCccHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRTR 162 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~----~~~~ip~i-vviNK~D~~~~~~~~~~ 162 (711)
.+.+.||||||.... ..+..++..+|.+|+++.+....-......++.+ ...+++.+ +|+|++|.. ..+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HHH
Confidence 578999999986542 1244568999999999988643222222332222 23466654 689999841 234
Q ss_pred HHHHHHhCCcc
Q 005154 163 DMIVTNLGAKP 173 (711)
Q Consensus 163 ~~l~~~l~~~~ 173 (711)
+++.+.++...
T Consensus 189 ~~~~~~~~~~v 199 (267)
T cd02032 189 DKFVEAVGMPV 199 (267)
T ss_pred HHHHHhCCCCE
Confidence 45555555543
No 457
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.97 E-value=0.0023 Score=68.95 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=63.0
Q ss_pred cCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-----------ChhHHHHHHHHHh--
Q 005154 73 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK-- 139 (711)
Q Consensus 73 ~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-----------~~~t~~~~~~~~~-- 139 (711)
|-.|.......+.+++..+.+||.+|+..+...|...+..++++++|+|.++.- .......++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 344555556667788999999999999999999999999999999999999632 1122333443332
Q ss_pred --cCCCeEEEEeccCcCC
Q 005154 140 --YGVPRICFVNKMDRLG 155 (711)
Q Consensus 140 --~~ip~ivviNK~D~~~ 155 (711)
.++|+++++||.|...
T Consensus 248 ~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 248 WFANTSIILFLNKIDLFE 265 (342)
T ss_pred cccCCcEEEEEecHHhHH
Confidence 4789999999999863
No 458
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.92 E-value=0.01 Score=61.21 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=56.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC-CeEEEEeccCcCCcc--HHHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGAN--FFRTRDM 164 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i-p~ivviNK~D~~~~~--~~~~~~~ 164 (711)
.+.+.|||||+..+ ..+..++..+|.+|+++.+...-...+...++.+...+. +..+++|+++..... ....+++
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~ 188 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDD 188 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCchhcccccccCHHH
Confidence 58899999998765 345678899999999999875444455556666665554 567889999853211 1112556
Q ss_pred HHHHhCCc
Q 005154 165 IVTNLGAK 172 (711)
Q Consensus 165 l~~~l~~~ 172 (711)
+.+.++..
T Consensus 189 ~~~~~~~~ 196 (261)
T TIGR01968 189 VLEILSIP 196 (261)
T ss_pred HHHHhCCc
Confidence 66666653
No 459
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.90 E-value=0.011 Score=60.59 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=52.2
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh--cCCCeEEEEeccCcCCccHHHHHHHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~--~~ip~ivviNK~D~~~~~~~~~~~~l 165 (711)
+.+.+||||+... ..+..++..+|.+++++.+..--..... .+.+.... ...+.-+|+|+.|.......+..+.+
T Consensus 115 ~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 4799999999543 5677889999999999988632111122 12122221 23456689999997544344556667
Q ss_pred HHHhCCc
Q 005154 166 VTNLGAK 172 (711)
Q Consensus 166 ~~~l~~~ 172 (711)
++.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 7766654
No 460
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.89 E-value=0.0064 Score=53.28 Aligned_cols=72 Identities=25% Similarity=0.177 Sum_probs=47.3
Q ss_pred EEEEc-CCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 27 IGIMA-HIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 27 I~ivG-~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
|++.| ..|+||||++-.|.......... ....|..+ .+.+.++|||+..+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~------vl~~d~d~-------------------~~d~viiD~p~~~~--~~ 54 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR------VLLIDLDP-------------------QYDYIIIDTPPSLG--LL 54 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc------EEEEeCCC-------------------CCCEEEEeCcCCCC--HH
Confidence 55666 57999999998886333211100 01111111 16799999999765 34
Q ss_pred HHHHHHhcCeEEEEEeCCCC
Q 005154 106 VERALRVLDGAICLFDSVAG 125 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g 125 (711)
...++..+|.+++++++...
T Consensus 55 ~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 55 TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHHCCEEEEeccCCHH
Confidence 55889999999999998743
No 461
>PRK12288 GTPase RsgA; Reviewed
Probab=96.88 E-value=0.0052 Score=66.16 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=34.2
Q ss_pred HHhcCeEEEEEeCCCCCChhHH-HHHHHHHhcCCCeEEEEeccCcCC
Q 005154 110 LRVLDGAICLFDSVAGVEPQSE-TVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 110 l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..++|.+++|++.......... .++..+...++|+++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 4668999999998765554433 344456677899999999999864
No 462
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.86 E-value=0.0059 Score=52.70 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=61.0
Q ss_pred EEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCc-cccCcc
Q 005154 325 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 403 (711)
Q Consensus 325 ~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdt 403 (711)
.++|.....+++.|.++.+-|.+|+|++||.+...... .+|+.++...| ..+.+|.||+.+.+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMVDENG---KALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEECCCC---CCccccCCCCCEEEeeecCCccCCCE
Confidence 46788888899999999999999999999999876532 35666555544 5689999999999999876 477776
Q ss_pred cc
Q 005154 404 LC 405 (711)
Q Consensus 404 l~ 405 (711)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 463
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.85 E-value=0.0087 Score=65.25 Aligned_cols=136 Identities=17% Similarity=0.241 Sum_probs=86.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhc------CC--ccee--eeecCC----------Cccccchh-----------
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYT------GR--NYKI--GEVHEG----------TATMDWME----------- 68 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~------g~--~~~~--~~~~~g----------~~~~d~~~----------- 68 (711)
..++.+.|+++|.-.+||||.++.+.... |. ...+ .+...| .+-.|-.+
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 34678999999999999999999885321 11 0111 111122 11111111
Q ss_pred -----hhhhcCceeeeeeEEEEecC---eeEEEEeCCCCCc-------------hHHHHHHHHHhcCeEEEEEeCCCCCC
Q 005154 69 -----QEQERGITITSAATTTYWNK---HRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDSVAGVE 127 (711)
Q Consensus 69 -----~e~~~giti~~~~~~~~~~~---~~i~liDtPG~~d-------------f~~~~~~~l~~~D~~llvvda~~g~~ 127 (711)
..-..|.|+....+++..++ .+..|+|.||.+. .......++.+-.++|+||--.. +.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS-VD 462 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS-VD 462 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC-cc
Confidence 11234888988888888765 4789999999652 34445567777899998874321 22
Q ss_pred hh---HHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 128 PQ---SETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 128 ~~---t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.. ...+..++.-.|...|+|++|.|+...
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 22 223445566678899999999999764
No 464
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.005 Score=71.93 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCC-c--cccchh-hhhhcCceeeeeeE--EE-----EecC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-A--TMDWME-QEQERGITITSAAT--TT-----YWNK 88 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~-~--~~d~~~-~e~~~giti~~~~~--~~-----~~~~ 88 (711)
...|+++|+.|+||||++..|.... |. .++.-+...+ + ..+... .-...|+.+....- .+ ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4689999999999999999997322 11 1111111000 0 000000 01122333321100 00 1246
Q ss_pred eeEEEEeCCCCCchHHHHHHHHH------hcCeEEEEEeCCCCCChhHHHHHHHHHhc-CC-CeEEEEeccCcCC
Q 005154 89 HRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKY-GV-PRICFVNKMDRLG 155 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~------~~D~~llvvda~~g~~~~t~~~~~~~~~~-~i-p~ivviNK~D~~~ 155 (711)
+.+.||||||......+....+. .-+-.++|+|++.+.... .++.+..... +. +-=++++|+|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l-~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL-NEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH-HHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 78999999994332222222222 235679999998532211 1122222211 11 2347799999753
No 465
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.014 Score=57.73 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
++|.++|+--+||||+.....++.... +.+-.|....+|.....-+ -..+.+||-||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-------------eTlflESTski~~d~is~s----finf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-------------ETLFLESTSKITRDHISNS----FINFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-------------ceeEeeccCcccHhhhhhh----hcceEEeecCCccccCC
Confidence 559999999999999988775332211 1111121112222111101 14678999999998643
Q ss_pred ---HHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhc----CCCeEEEEeccCcCCcc
Q 005154 105 ---EVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKY----GVPRICFVNKMDRLGAN 157 (711)
Q Consensus 105 ---~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~----~ip~ivviNK~D~~~~~ 157 (711)
..+...+.+-+.++|+|+.+.. .+.++.+.-.++.+ ++.+=+++-|.|-...+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 3566778899999999998543 33344444444443 45566899999987755
No 466
>CHL00175 minD septum-site determining protein; Validated
Probab=96.83 E-value=0.025 Score=59.24 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=58.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccH--HHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF--FRTRDM 164 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~--~~~~~~ 164 (711)
.+.+.|||||+... ..+..++..+|.+++|+++...--.......+.+.+.+.+ .-+++|+++....+. ....++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 68899999998765 4566778889999999988754444455556666666554 457899998543211 113556
Q ss_pred HHHHhCCcceEEEec
Q 005154 165 IVTNLGAKPLVVQLP 179 (711)
Q Consensus 165 l~~~l~~~~~~~~~p 179 (711)
+.+.++.... ..+|
T Consensus 204 l~~~~~~~~~-~~Ip 217 (281)
T CHL00175 204 VQEMLGIPLL-GAIP 217 (281)
T ss_pred HHHHhCCCeE-EEcc
Confidence 7777776433 3444
No 467
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.81 E-value=0.014 Score=61.48 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=50.4
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH---HHHHh-cCCCeE-EEEeccCcCCccHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW---RQADK-YGVPRI-CFVNKMDRLGANFFRTR 162 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~---~~~~~-~~ip~i-vviNK~D~~~~~~~~~~ 162 (711)
++.+.+|||||.... .....++..||.+|+++++..---.....+. +.+.+ .+++.. +++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 578999999986431 2234567889999999988642222222233 22221 244444 78899873 2345
Q ss_pred HHHHHHhCCcceEEEec
Q 005154 163 DMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 163 ~~l~~~l~~~~~~~~~p 179 (711)
+++.+.++...+. .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 5566667665444 444
No 468
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.79 E-value=0.00016 Score=68.18 Aligned_cols=116 Identities=20% Similarity=0.342 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC---eeEEEEeCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPG 98 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~---~~i~liDtPG 98 (711)
+....+.|+|.-++|||+++.+.+++.....-...+ |..... --+.|++ .+++|||..|
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI----------------gvdfal--kVl~wdd~t~vRlqLwdIag 84 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI----------------GVDFAL--KVLQWDDKTIVRLQLWDIAG 84 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH----------------hHHHHH--HHhccChHHHHHHHHhcchh
Confidence 556788999999999999999998554321111100 111111 1123333 3678999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH--h----cC--CCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD--K----YG--VPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~--~----~~--ip~ivviNK~D~~~ 155 (711)
+..|...+.-+.+.+.++.+|+|.+......-...|.+-. + .+ +|+++..||||...
T Consensus 85 Qerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 85 QERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred hhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 9999888888889999999999999765554444443321 1 23 45677789999764
No 469
>PRK13796 GTPase YqeH; Provisional
Probab=96.74 E-value=0.0078 Score=65.50 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhcC-eEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D-~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+|. .+...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 454 3666667666 88999999886555444443322 2789999999999864
No 470
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.65 E-value=0.016 Score=60.23 Aligned_cols=85 Identities=12% Similarity=-0.036 Sum_probs=46.2
Q ss_pred cCeeEEEEeCCCCCchHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHHHH---H-HhcCCCeEEE-EeccCcCCccHHH
Q 005154 87 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQ---A-DKYGVPRICF-VNKMDRLGANFFR 160 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~~~---~-~~~~ip~ivv-iNK~D~~~~~~~~ 160 (711)
+.+.+.||||||....... ...++..+|.+|+++.+..-.......+++. + ...+++...| .|+.. .....+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~ 192 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDE 192 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHH
Confidence 3689999999986531111 1123346999999998864221111222222 2 2235666544 45522 222345
Q ss_pred HHHHHHHHhCCcc
Q 005154 161 TRDMIVTNLGAKP 173 (711)
Q Consensus 161 ~~~~l~~~l~~~~ 173 (711)
.++++.+.++...
T Consensus 193 ~~~~l~~~~g~~v 205 (270)
T cd02040 193 LIDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHHcCCCe
Confidence 6777777777643
No 471
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.59 E-value=0.045 Score=58.64 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=54.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 166 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~ 166 (711)
+.+.+.+||||+..+ ..+..++..+|.+++|+++.-.-......+++.+...+...-+++|+....... .+++.
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 457899999999876 346788999999999998764333344555666665555566677875443222 35667
Q ss_pred HHhCCc
Q 005154 167 TNLGAK 172 (711)
Q Consensus 167 ~~l~~~ 172 (711)
+.++..
T Consensus 277 ~~lg~~ 282 (322)
T TIGR03815 277 ESLGLP 282 (322)
T ss_pred HHhCCC
Confidence 777754
No 472
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.57 E-value=0.019 Score=59.66 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH----hcCCCeE-EEEeccCcCCccHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRI-CFVNKMDRLGANFFRT 161 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~----~~~ip~i-vviNK~D~~~~~~~~~ 161 (711)
+.+.+.||||||..... .+..++..+|.+|+++.+..........+++.+. ..+++.+ +|+|++|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 45899999999864311 1224688999999998764321112222222222 3456653 788999854 34
Q ss_pred HHHHHHHhCCcce
Q 005154 162 RDMIVTNLGAKPL 174 (711)
Q Consensus 162 ~~~l~~~l~~~~~ 174 (711)
++++.+.++....
T Consensus 188 ~~~~~~~~~~~vl 200 (268)
T TIGR01281 188 IERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHcCCCEE
Confidence 5666666665433
No 473
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.56 E-value=0.022 Score=47.11 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=49.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCCccc
Q 005154 322 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTI 399 (711)
Q Consensus 322 ~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~ 399 (711)
.|....|.+.+.-.... ...|+|..|+|++|..| ++. +++.+..+.-. .+++++|.+|+-|++ .|.-++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEET-TEEESEEETT-EEEEEEET--TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccCC
Confidence 34455555655555657 77779999999999999 332 36666666643 489999999999998 4443567
Q ss_pred cCcccc
Q 005154 400 TGETLC 405 (711)
Q Consensus 400 ~Gdtl~ 405 (711)
.||+|.
T Consensus 75 eGDiLy 80 (81)
T PF14578_consen 75 EGDILY 80 (81)
T ss_dssp TT-EEE
T ss_pred CCCEEe
Confidence 777763
No 474
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0093 Score=60.83 Aligned_cols=30 Identities=23% Similarity=0.004 Sum_probs=24.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
..+..+++.-.|.|..|+|||||+|.++..
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHcc
Confidence 334567888889999999999999999843
No 475
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.52 E-value=0.016 Score=60.47 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=49.6
Q ss_pred ecCeeEEEEeCCCCCchH-HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH---hcCCCeE-EEEeccCcCCccHHH
Q 005154 86 WNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFFR 160 (711)
Q Consensus 86 ~~~~~i~liDtPG~~df~-~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~---~~~ip~i-vviNK~D~~~~~~~~ 160 (711)
++++.+.||||||..... -....++..+|.+|+++.+...--......++.+. ..++++. +++|+.+... -.+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~--~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDG--ERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCc--cHH
Confidence 356899999999864211 01112345789999999875321111112323332 3456664 7789765321 255
Q ss_pred HHHHHHHHhCCcc
Q 005154 161 TRDMIVTNLGAKP 173 (711)
Q Consensus 161 ~~~~l~~~l~~~~ 173 (711)
.++++++.++...
T Consensus 192 ~~e~l~~~~~~~v 204 (273)
T PRK13232 192 LLEAFAKKLGSQL 204 (273)
T ss_pred HHHHHHHHhCCCe
Confidence 6788888887643
No 476
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.51 E-value=0.018 Score=48.98 Aligned_cols=75 Identities=21% Similarity=0.155 Sum_probs=49.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH-
Q 005154 27 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE- 105 (711)
Q Consensus 27 I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~- 105 (711)
+++.|..|+||||++..|...... .|..+- .+ + .+.++|+|+..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------------~g~~v~----~~--~--d~iivD~~~~~~~~~~~ 51 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------------RGKRVL----LI--D--DYVLIDTPPGLGLLVLL 51 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------------CCCeEE----EE--C--CEEEEeCCCCccchhhh
Confidence 678899999999999999633221 011110 00 0 7899999997764321
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhHH
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQSE 131 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t~ 131 (711)
....+..+|.+++++++.........
T Consensus 52 ~~~~~~~~~~vi~v~~~~~~~~~~~~ 77 (99)
T cd01983 52 CLLALLAADLVIIVTTPEALAVLGAR 77 (99)
T ss_pred hhhhhhhCCEEEEecCCchhhHHHHH
Confidence 25677888999999998764443333
No 477
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.48 E-value=0.0065 Score=75.92 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCC-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV- 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~- 100 (711)
..+=..|+|.+|+||||++..- |..-.... ....+..+|+. ....+.| -...-.+|||+|.-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl~~---------~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~ 173 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPLAE---------RLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYT 173 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcCch---------hhccccccCCC---CCcccceEecCCEEEEcCCCccc
Confidence 4567899999999999999865 22111100 00000001110 0011222 23456799999932
Q ss_pred -------chHHHHHHHH---------HhcCeEEEEEeCCCCCCh--h-HHHH-------HHHH---HhcCCCeEEEEecc
Q 005154 101 -------DFTLEVERAL---------RVLDGAICLFDSVAGVEP--Q-SETV-------WRQA---DKYGVPRICFVNKM 151 (711)
Q Consensus 101 -------df~~~~~~~l---------~~~D~~llvvda~~g~~~--~-t~~~-------~~~~---~~~~ip~ivviNK~ 151 (711)
....++..-+ +..||+|++||+.+-... . ...+ +..+ ....+|+.+++|||
T Consensus 174 ~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~ 253 (1169)
T TIGR03348 174 TQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKA 253 (1169)
T ss_pred cCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1122233222 235999999999854321 1 1111 1112 13478999999999
Q ss_pred CcCC
Q 005154 152 DRLG 155 (711)
Q Consensus 152 D~~~ 155 (711)
|+..
T Consensus 254 Dll~ 257 (1169)
T TIGR03348 254 DLLA 257 (1169)
T ss_pred hhhc
Confidence 9864
No 478
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.48 E-value=0.0046 Score=60.70 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=54.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC---eEEEEeccCcCCcc-HHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP---RICFVNKMDRLGAN-FFRTRD 163 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip---~ivviNK~D~~~~~-~~~~~~ 163 (711)
.+.+.+||||+..... +..++..+|.+|+++++..--...+..+...+...+.+ .-+|+||.+....+ ..+...
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~ 171 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIE 171 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHH
Confidence 3899999999977644 77789999999999998753333445555666666633 35789999876433 333444
Q ss_pred HHHHHh
Q 005154 164 MIVTNL 169 (711)
Q Consensus 164 ~l~~~l 169 (711)
.....+
T Consensus 172 ~~~~~~ 177 (195)
T PF01656_consen 172 EIEREL 177 (195)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 444433
No 479
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.36 E-value=0.029 Score=58.80 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=49.0
Q ss_pred cCeeEEEEeCCCCCchHH-HHHHHHHhcCeEEEEEeCCCCCChhHH---HHHHHHHh-cCCCeEEEEeccCcCCccHHHH
Q 005154 87 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSE---TVWRQADK-YGVPRICFVNKMDRLGANFFRT 161 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~-~~~~~l~~~D~~llvvda~~g~~~~t~---~~~~~~~~-~~ip~ivviNK~D~~~~~~~~~ 161 (711)
.++.+.||||||..-... .+..++..+|.+|+++.+...-..... ..+..... .+.++..+++..... ....+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~-~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRSV-IDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccCC-CchhHH
Confidence 368999999998542111 122345668999999998742221222 22333322 355555445433222 112356
Q ss_pred HHHHHHHhCCcceEEEec
Q 005154 162 RDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~~p 179 (711)
++++.+.++.... -.+|
T Consensus 194 ~e~l~~~~g~~vl-~~Ip 210 (279)
T PRK13230 194 VEEFAKKIGTNVI-GKIP 210 (279)
T ss_pred HHHHHHHhCCcEE-EECC
Confidence 7778777876544 2444
No 480
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.36 E-value=0.034 Score=55.65 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHH---hcCCcceeeeecCCCccccchhhhhhcC-----ceeeeeeEEE----------EecCeeEEE
Q 005154 32 HIDAGKTTTTERVLF---YTGRNYKIGEVHEGTATMDWMEQEQERG-----ITITSAATTT----------YWNKHRINI 93 (711)
Q Consensus 32 ~~~~GKSTL~~~Ll~---~~g~~~~~~~~~~g~~~~d~~~~e~~~g-----iti~~~~~~~----------~~~~~~i~l 93 (711)
.-|+||||++-.|.. ..|.....-+-|+......|.....+.| +.+.... .. .-.++.+.|
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chhhHHHHHHHHHhcCCCEEE
Confidence 479999999988852 2232222222244444445544333332 1121110 00 013568999
Q ss_pred EeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChh---HHHHHHHH---HhcCCCeEEEEeccCc
Q 005154 94 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQA---DKYGVPRICFVNKMDR 153 (711)
Q Consensus 94 iDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~---t~~~~~~~---~~~~ip~ivviNK~D~ 153 (711)
|||+|.... .+..++..+|.+|+-+-.+.-.-.+ |..++... ....+|.-|+.|+++-
T Consensus 89 vDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 89 VDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred EeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 999997763 3556778899999877665332222 23333222 2457899999999974
No 481
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.25 E-value=0.027 Score=58.88 Aligned_cols=84 Identities=11% Similarity=-0.068 Sum_probs=45.8
Q ss_pred CeeEEEEeCCCCCchHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHH---HHH-HhcCCCeE-EEEeccCcCCccHHHH
Q 005154 88 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVW---RQA-DKYGVPRI-CFVNKMDRLGANFFRT 161 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~---~~~-~~~~ip~i-vviNK~D~~~~~~~~~ 161 (711)
.+.+.||||||......- ...++..+|.+|+++.+..---.....++ ..+ ...+++.. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 579999999986521110 11234478999999988642222222222 222 23456665 4456522 2233455
Q ss_pred HHHHHHHhCCcc
Q 005154 162 RDMIVTNLGAKP 173 (711)
Q Consensus 162 ~~~l~~~l~~~~ 173 (711)
.+++.+.++...
T Consensus 193 ~e~l~~~~~~~v 204 (275)
T TIGR01287 193 IDEFAKKLGTQL 204 (275)
T ss_pred HHHHHHHhCCce
Confidence 677777777643
No 482
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.22 E-value=0.067 Score=52.81 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=92.8
Q ss_pred cCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccc
Q 005154 570 AGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFG 649 (711)
Q Consensus 570 ~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 649 (711)
.+..+.||.+.+...- -..---.+.+..|=..|..+|+..|...-+.|+..+.|.||-..++.+...|.+..++|.+.+
T Consensus 88 ~~~~l~nv~vVVtRYF-GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~~ 166 (204)
T TIGR00257 88 RGSDLGDIGAVVVRYF-GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKSN 166 (204)
T ss_pred HHCCCCcEEEEEEEec-CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEeeE
Confidence 4567888888887421 001122345566777888899999999999999999999999999999999999999999998
Q ss_pred cCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEE
Q 005154 650 DKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 685 (711)
Q Consensus 650 ~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~ 685 (711)
..+ .+.+...+|..+.-.|...|..+|+|+..+.
T Consensus 167 y~~--~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 167 FSN--NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred ecC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 844 4899999999999999999999999998653
No 483
>PRK13695 putative NTPase; Provisional
Probab=96.22 E-value=0.011 Score=57.31 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=29.9
Q ss_pred HhcCeEEEEEe---CCCCCChhHHHHHHHHHhcCCCeEEEEecc
Q 005154 111 RVLDGAICLFD---SVAGVEPQSETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 111 ~~~D~~llvvd---a~~g~~~~t~~~~~~~~~~~ip~ivviNK~ 151 (711)
..+|. +++| ..+....+....+..+.+.+.|+++++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34555 6889 666666777777888878899999999984
No 484
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.21 E-value=0.0053 Score=67.01 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|++||.||+||||++|+|. |.-.-..+--+ |.|-+-.++.+ .-.+.|-||||..-=+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv---G~KkVsVS~TP--------------GkTKHFQTi~l---s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV---GRKKVSVSSTP--------------GKTKHFQTIFL---SPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh---cCceeeeecCC--------------CCcceeEEEEc---CCCceecCCCCccccC
Confidence 5899999999999999999996 32111111112 33433333222 2467899999965321
Q ss_pred HHHHHHHHhcCeE
Q 005154 104 LEVERALRVLDGA 116 (711)
Q Consensus 104 ~~~~~~l~~~D~~ 116 (711)
-...++...++|+
T Consensus 374 f~~~r~emvl~Gi 386 (562)
T KOG1424|consen 374 FSPTRAEMVLNGI 386 (562)
T ss_pred CCchHHHHHHhcC
Confidence 1222445555554
No 485
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.19 E-value=0.079 Score=55.12 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=53.4
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh-------c--CCCeEEEEeccCcCCcc-
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-------Y--GVPRICFVNKMDRLGAN- 157 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~-------~--~ip~ivviNK~D~~~~~- 157 (711)
.+.+.+||||+... .....++..+|.+++++++...-......+++.+.. . +++..+++|++|.....
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~ 190 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhhh
Confidence 58999999998775 345667899999999999975433334444444331 1 23356789999864311
Q ss_pred -HHHHHHHHHHHhCCc
Q 005154 158 -FFRTRDMIVTNLGAK 172 (711)
Q Consensus 158 -~~~~~~~l~~~l~~~ 172 (711)
.....+++.+.++..
T Consensus 191 ~~~~~~~~~~~~~g~~ 206 (270)
T PRK10818 191 GDMLSMEDVLEILRIK 206 (270)
T ss_pred cccccHHHHHHHhCCc
Confidence 111356666667664
No 486
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.13 E-value=0.0091 Score=57.69 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=34.3
Q ss_pred CeEEEEEeCCCCCChhHHHHHHH--HHhcCCCeEEEEeccCcCC
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~--~~~~~ip~ivviNK~D~~~ 155 (711)
|++++|+|+..+.......+.+. +...+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 88999999998877766666665 4456789999999999965
No 487
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=96.08 E-value=0.04 Score=60.88 Aligned_cols=84 Identities=8% Similarity=0.080 Sum_probs=56.0
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHH-------HHHHHhc--CC--CeE-EEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-------WRQADKY--GV--PRI-CFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~-------~~~~~~~--~i--p~i-vviNK~D~~ 154 (711)
+.+.+.|||||+...+ .+..++..+|.+|+.+.+..--......+ ++.+.+. ++ ..+ +++|+.|..
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 3589999999998764 57889999999999998763211112222 2233332 22 233 789999975
Q ss_pred CccHHHHHHHHHHHhCCc
Q 005154 155 GANFFRTRDMIVTNLGAK 172 (711)
Q Consensus 155 ~~~~~~~~~~l~~~l~~~ 172 (711)
...-.+..+.+++.++..
T Consensus 328 ~~~~~~~~~~l~~~~~~~ 345 (405)
T PRK13869 328 DAPQTKVAALLRNMFEDH 345 (405)
T ss_pred CcHHHHHHHHHHHHhhhh
Confidence 554566778888887654
No 488
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=96.06 E-value=0.047 Score=60.09 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=56.1
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-------HHHHHHHhcC----CCe-EEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-------TVWRQADKYG----VPR-ICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-------~~~~~~~~~~----ip~-ivviNK~D~~ 154 (711)
+.+.+.|||||+..+. .+..++..+|.+|+++.+..--...+. ..+..+.+.+ ... -+++|+.|..
T Consensus 233 ~~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred hcCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 3589999999997764 577899999999999987532111111 1223333332 222 3689999976
Q ss_pred CccHHHHHHHHHHHhCCcce
Q 005154 155 GANFFRTRDMIVTNLGAKPL 174 (711)
Q Consensus 155 ~~~~~~~~~~l~~~l~~~~~ 174 (711)
.....+..+.+++.++....
T Consensus 311 ~~~~~~~~~~l~~~~~~~vl 330 (387)
T TIGR03453 311 DGPQAQMVAFLRSLFGDHVL 330 (387)
T ss_pred CccHHHHHHHHHHHhccccc
Confidence 55556677788887775443
No 489
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.01 E-value=0.019 Score=59.65 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHh
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+.|+|+|..|+|||||+..|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999744
No 490
>PRK11568 hypothetical protein; Provisional
Probab=95.99 E-value=0.11 Score=51.29 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=92.7
Q ss_pred cCCCeeEEEEEEEe--ccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeec
Q 005154 570 AGFPVVDVRAALVD--GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 647 (711)
Q Consensus 570 ~g~pv~~v~~~l~~--~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~ 647 (711)
.+..++||.+.+.. |-.. -..+.+..|=..|.++|+.+|...-..|...+.|.++-..+|.+...|.+..+.|.+
T Consensus 88 ~~~~l~nv~vVVtRYFGGik---LG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T PRK11568 88 MGSGVGEITAVVVRYYGGIL---LGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVN 164 (204)
T ss_pred HHCCCccEEEEEEEEcCCcc---cccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEc
Confidence 46678899888874 2221 123445567778888999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEE
Q 005154 648 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 685 (711)
Q Consensus 648 ~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~ 685 (711)
.+... .+.+...+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~--~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 165 SEYQA--FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred ceecC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 98844 5888999999999999999999999998654
No 491
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.98 E-value=0.031 Score=58.58 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=67.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCc----cccchhhh-hhcCceeeeee-----EEEEe------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA----TMDWMEQE-QERGITITSAA-----TTTYW------ 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~----~~d~~~~e-~~~giti~~~~-----~~~~~------ 86 (711)
+.-.|.++|-.|+||||-+..|.+..-......-...|.+ ..+..... ..-|+.+-+.. .++-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 3567799999999999999999644322111111111111 01111111 12244333321 00101
Q ss_pred --cCeeEEEEeCCCCC----chHHHHHHHHHh---cCe-----EEEEEeCCCCCChhHHHHHHHHHhc--CCCe-EEEEe
Q 005154 87 --NKHRINIIDTPGHV----DFTLEVERALRV---LDG-----AICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVN 149 (711)
Q Consensus 87 --~~~~i~liDtPG~~----df~~~~~~~l~~---~D~-----~llvvda~~g~~~~t~~~~~~~~~~--~ip~-ivviN 149 (711)
+++.+.|+||+|-. ..+.+.....+. .+. +++++||+.|-..- .|++.. -+++ =++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-----~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-----SQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-----HHHHHHHHhcCCceEEEE
Confidence 57899999999933 345554444443 344 78888999875432 222221 1233 47899
Q ss_pred ccCc
Q 005154 150 KMDR 153 (711)
Q Consensus 150 K~D~ 153 (711)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 492
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.98 E-value=0.0052 Score=65.12 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+...++|+|.||+||||++|+|. .......|.+ .|+|.....+.+ +..|.|+|+||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~--~~k~C~vg~~---------------pGvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLK--RRKACNVGNV---------------PGVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHH--HhccccCCCC---------------ccchhhhhheec---cCCceeccCCcee
No 493
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.052 Score=57.49 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeeecCCCc---cccchhh-hhhcCceeeeeeEEEE-------------e
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTA---TMDWMEQ-EQERGITITSAATTTY-------------W 86 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~~~g~~---~~d~~~~-e~~~giti~~~~~~~~-------------~ 86 (711)
-.|.++|--|+||||.+-.|.++.... .+..-+...++ ..|.... ..+.++.+..+..... .
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 456899999999999999997543211 01111111111 1222222 2233444443322221 2
Q ss_pred cCeeEEEEeCCCCCc----hHHHHHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHHhcC--CCe-EEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVD----FTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~d----f~~~~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~~~~--ip~-ivviNK~D~~ 154 (711)
+++.+.|+||.|-.. ...|+...... -|-+|+|+|++-|.... .+++..+ +-+ -++++|+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEecccC
Confidence 578999999999442 33444433333 39999999998764322 2222222 222 4679999964
No 494
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.95 E-value=0.071 Score=54.18 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 168 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~ 168 (711)
..+.+||||--.- -.+..++..+|.+|+|.-++.--....+.+++.+..+++|..+|+||-+.-.. .+++..+.
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s----~ie~~~~e 237 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS----EIEEYCEE 237 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch----HHHHHHHH
Confidence 4789999995333 46889999999999999988655556677888889999999999999955433 24444444
Q ss_pred hCC
Q 005154 169 LGA 171 (711)
Q Consensus 169 l~~ 171 (711)
.+.
T Consensus 238 ~gi 240 (284)
T COG1149 238 EGI 240 (284)
T ss_pred cCC
Confidence 444
No 495
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.94 E-value=0.028 Score=43.08 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHhc-CeEEEEEeCCCCCChhH---HHHHHHHHh-c-CCCeEEEEeccC
Q 005154 105 EVERALRVL-DGAICLFDSVAGVEPQS---ETVWRQADK-Y-GVPRICFVNKMD 152 (711)
Q Consensus 105 ~~~~~l~~~-D~~llvvda~~g~~~~t---~~~~~~~~~-~-~ip~ivviNK~D 152 (711)
+...+++.. +++++++|.++.-.... ..+++.++. . +.|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 345556544 89999999996433222 233344443 3 899999999998
No 496
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.93 E-value=0.096 Score=57.44 Aligned_cols=87 Identities=13% Similarity=-0.009 Sum_probs=55.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCCh---hHH----HHHHHHHh--cCCCeEEEEeccCcCCcc
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSE----TVWRQADK--YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~---~t~----~~~~~~~~--~~ip~ivviNK~D~~~~~ 157 (711)
+.+.+.|||||+...+ .+..++..+|.+|+.+.+..--.. +.. .+...+.. .+..+-+++|+.|.....
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN 310 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch
Confidence 3589999999998875 577899999999998877521111 111 11122221 223344789999965433
Q ss_pred -HHHHHHHHHHHhCCcceE
Q 005154 158 -FFRTRDMIVTNLGAKPLV 175 (711)
Q Consensus 158 -~~~~~~~l~~~l~~~~~~ 175 (711)
.....+.+++.|+.....
T Consensus 311 ~~~~i~~~l~~~~g~~vl~ 329 (387)
T PHA02519 311 QSRWMEEQIRNTWGSMVLR 329 (387)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 334678888888865443
No 497
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.1 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..-.|+++|.-|+|||||++.|.
T Consensus 187 df~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHh
Confidence 35678999999999999999885
No 498
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.016 Score=56.36 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc---
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d--- 101 (711)
.+|.|+|+|||||||++..|....+.. .++.| |....+...+..... ..=.++|-....+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~----hlstg----d~~r~~~~~~t~lg~---------~~k~~i~~g~lv~d~i 63 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLP----HLDTG----DILRAAIAERTELGE---------EIKKYIDKGELVPDEI 63 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCc----EEcHh----HHhHhhhccCChHHH---------HHHHHHHcCCccchHH
Confidence 378999999999999999998664422 22211 222211111100000 0001344444221
Q ss_pred hHHHHHHHHHhcCeE-EEEEeCCCCCChhHHHHHHHHHhcCCCeEEEE
Q 005154 102 FTLEVERALRVLDGA-ICLFDSVAGVEPQSETVWRQADKYGVPRICFV 148 (711)
Q Consensus 102 f~~~~~~~l~~~D~~-llvvda~~g~~~~t~~~~~~~~~~~ip~ivvi 148 (711)
....+...+..+|+. .+++|.-.....|.+.+-+.+...+.+.-.++
T Consensus 64 ~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 64 VNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred HHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 123445556666744 47778776666677766666667665544443
No 499
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.71 E-value=0.012 Score=62.18 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+-..|+++|.||+||||++|.|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHh
Confidence 45789999999999999999996
No 500
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.70 E-value=0.11 Score=52.33 Aligned_cols=67 Identities=15% Similarity=0.019 Sum_probs=50.0
Q ss_pred eeEEEEeCCCCCchHHH-HHHHHHh--cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCC
Q 005154 89 HRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 155 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~-~~~~l~~--~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~ 155 (711)
+.+.++|||........ +...+.. +|.+++|+.+.......+...++.++..+.+. -+|+|++....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 89999999975443322 2233333 48999999998777778888899999998875 47899987653
Done!