Query 005154
Match_columns 711
No_of_seqs 337 out of 2826
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 1E-138 3E-143 1218.5 69.6 687 19-706 8-708 (709)
2 2rdo_7 EF-G, elongation factor 100.0 3E-134 1E-138 1175.0 80.6 688 19-707 5-703 (704)
3 2xex_A Elongation factor G; GT 100.0 1E-132 3E-137 1161.4 74.9 686 18-706 4-690 (693)
4 1dar_A EF-G, elongation factor 100.0 3E-132 9E-137 1157.6 66.8 683 19-705 7-690 (691)
5 2dy1_A Elongation factor G; tr 100.0 3E-123 9E-128 1078.7 75.8 656 20-707 5-662 (665)
6 3j25_A Tetracycline resistance 100.0 3E-127 9E-132 1107.2 20.2 617 23-699 1-617 (638)
7 1n0u_A EF-2, elongation factor 100.0 1E-114 3E-119 1028.9 50.6 668 21-708 16-824 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 1.6E-90 5.4E-95 784.7 32.8 485 20-528 27-524 (548)
9 2ywe_A GTP-binding protein LEP 100.0 9.6E-81 3.3E-85 705.7 48.5 464 21-694 3-483 (600)
10 3cb4_D GTP-binding protein LEP 100.0 9.3E-79 3.2E-83 691.2 47.9 460 22-694 2-478 (599)
11 3tr5_A RF-3, peptide chain rel 100.0 7.7E-74 2.6E-78 644.8 37.2 458 22-503 11-475 (528)
12 2h5e_A Peptide chain release f 100.0 1.2E-73 4.1E-78 644.1 37.8 459 22-504 11-477 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 4.4E-42 1.5E-46 355.6 18.3 198 391-700 2-209 (332)
14 1g7s_A Translation initiation 100.0 2.8E-37 9.4E-42 351.4 16.0 332 23-445 4-373 (594)
15 3j2k_7 ERF3, eukaryotic polype 100.0 4.4E-35 1.5E-39 324.2 30.8 280 19-410 12-329 (439)
16 2c78_A Elongation factor TU-A; 100.0 2.7E-35 9.4E-40 323.5 24.3 272 22-408 9-308 (405)
17 1d2e_A Elongation factor TU (E 100.0 2.6E-35 9E-40 322.5 22.4 270 24-408 3-290 (397)
18 1jny_A EF-1-alpha, elongation 100.0 1E-34 3.5E-39 321.5 22.3 274 22-410 4-319 (435)
19 3mca_A HBS1, elongation factor 100.0 2.2E-34 7.5E-39 328.9 16.7 275 21-410 174-491 (592)
20 3p26_A Elongation factor 1 alp 100.0 2E-32 6.7E-37 307.2 28.8 280 23-409 32-363 (483)
21 3avx_A Elongation factor TS, e 100.0 3.7E-33 1.3E-37 328.2 22.8 274 21-409 293-582 (1289)
22 2elf_A Protein translation elo 100.0 2.8E-33 9.6E-38 302.3 19.4 243 24-406 21-275 (370)
23 1r5b_A Eukaryotic peptide chai 100.0 3.4E-33 1.2E-37 311.4 20.2 277 22-410 41-358 (467)
24 1zun_B Sulfate adenylate trans 100.0 4.1E-32 1.4E-36 300.7 27.7 274 22-410 22-328 (434)
25 1kk1_A EIF2gamma; initiation o 100.0 4.4E-32 1.5E-36 298.5 26.8 258 22-410 8-318 (410)
26 1f60_A Elongation factor EEF1A 100.0 5.2E-32 1.8E-36 301.2 25.3 272 23-409 6-329 (458)
27 3izq_1 HBS1P, elongation facto 100.0 3.9E-32 1.3E-36 311.0 22.8 286 22-409 165-497 (611)
28 1s0u_A EIF-2-gamma, translatio 100.0 5.3E-31 1.8E-35 289.5 26.7 257 22-409 6-315 (408)
29 1wb1_A Translation elongation 100.0 2.2E-31 7.4E-36 297.6 17.1 260 23-407 18-284 (482)
30 3sjy_A Translation initiation 100.0 3E-30 1E-34 283.1 23.7 270 22-410 6-310 (403)
31 1zo1_I IF2, translation initia 100.0 2E-32 6.9E-37 304.0 5.5 303 22-455 2-334 (501)
32 3izy_P Translation initiation 100.0 2.3E-31 8E-36 297.8 7.5 257 23-410 3-261 (537)
33 3qq5_A Small GTP-binding prote 99.8 6E-20 2E-24 200.6 11.3 121 18-157 28-156 (423)
34 3iev_A GTP-binding protein ERA 99.8 1.5E-18 5.1E-23 183.0 18.9 118 20-154 6-135 (308)
35 1wf3_A GTP-binding protein; GT 99.8 1.2E-18 4E-23 182.9 16.7 117 23-156 6-132 (301)
36 2dyk_A GTP-binding protein; GT 99.8 3.9E-18 1.3E-22 161.0 15.2 116 24-156 1-123 (161)
37 4dhe_A Probable GTP-binding pr 99.8 2.2E-18 7.5E-23 172.6 13.4 124 17-156 22-159 (223)
38 2lkc_A Translation initiation 99.8 1.9E-18 6.5E-23 166.2 10.9 118 22-157 6-123 (178)
39 1zj6_A ADP-ribosylation factor 99.7 1.5E-17 5.2E-22 161.7 16.5 113 23-156 15-132 (187)
40 1upt_A ARL1, ADP-ribosylation 99.7 8.5E-18 2.9E-22 160.4 14.3 113 23-156 6-123 (171)
41 3iby_A Ferrous iron transport 99.7 4.6E-18 1.6E-22 174.3 13.0 112 24-155 1-124 (256)
42 1r8s_A ADP-ribosylation factor 99.7 4.1E-17 1.4E-21 154.6 18.6 110 26-156 2-116 (164)
43 4bas_A ADP-ribosylation factor 99.7 8.2E-18 2.8E-22 164.9 14.2 120 18-156 11-142 (199)
44 1ega_A Protein (GTP-binding pr 99.7 3.5E-18 1.2E-22 179.5 12.1 115 23-155 7-130 (301)
45 1svi_A GTP-binding protein YSX 99.7 2.4E-17 8.4E-22 161.1 17.2 123 16-157 15-150 (195)
46 1zd9_A ADP-ribosylation factor 99.7 3.1E-17 1.1E-21 159.8 17.7 115 22-156 20-139 (188)
47 2xtp_A GTPase IMAP family memb 99.7 4.2E-19 1.4E-23 182.6 4.5 203 21-246 19-256 (260)
48 2efe_B Small GTP-binding prote 99.7 2.6E-17 8.8E-22 158.7 16.4 118 22-155 10-131 (181)
49 1fzq_A ADP-ribosylation factor 99.7 8.2E-17 2.8E-21 155.9 19.8 114 22-156 14-132 (181)
50 2hjg_A GTP-binding protein ENG 99.7 7.1E-18 2.4E-22 186.6 13.7 118 22-156 173-301 (436)
51 2b6h_A ADP-ribosylation factor 99.7 6.4E-17 2.2E-21 158.4 18.6 114 22-156 27-145 (192)
52 2h57_A ADP-ribosylation factor 99.7 1.5E-17 5.2E-22 162.1 14.0 117 21-156 18-141 (190)
53 3i8s_A Ferrous iron transport 99.7 8.8E-18 3E-22 174.1 12.5 112 24-155 3-126 (274)
54 2h17_A ADP-ribosylation factor 99.7 2.4E-17 8.3E-22 159.5 14.8 116 20-156 17-137 (181)
55 3pqc_A Probable GTP-binding pr 99.7 6.4E-17 2.2E-21 157.7 17.3 120 17-156 16-148 (195)
56 1r2q_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 155.0 15.4 117 23-155 5-125 (170)
57 1z0f_A RAB14, member RAS oncog 99.7 4.8E-17 1.6E-21 156.2 15.8 119 21-155 12-134 (179)
58 2fg5_A RAB-22B, RAS-related pr 99.7 4.1E-17 1.4E-21 159.5 15.2 118 22-155 21-142 (192)
59 3t1o_A Gliding protein MGLA; G 99.7 9.9E-18 3.4E-22 163.8 10.7 129 22-156 12-150 (198)
60 2p5s_A RAS and EF-hand domain 99.7 5.1E-17 1.8E-21 159.8 15.7 121 18-154 22-146 (199)
61 4dcu_A GTP-binding protein ENG 99.7 2.2E-17 7.6E-22 183.7 14.6 119 21-156 192-321 (456)
62 2gf9_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 161.3 12.2 119 21-155 19-141 (189)
63 1ksh_A ARF-like protein 2; sma 99.7 2.4E-17 8.3E-22 159.9 12.5 114 22-156 16-134 (186)
64 1m2o_B GTP-binding protein SAR 99.7 2.8E-17 9.6E-22 160.6 12.2 111 24-155 23-138 (190)
65 1zbd_A Rabphilin-3A; G protein 99.7 7.1E-17 2.4E-21 159.1 15.2 118 22-155 6-127 (203)
66 3a1s_A Iron(II) transport prot 99.7 4.2E-17 1.4E-21 167.4 14.0 113 22-154 3-123 (258)
67 3kkq_A RAS-related protein M-R 99.7 8.2E-17 2.8E-21 155.6 15.2 118 21-155 15-137 (183)
68 3k53_A Ferrous iron transport 99.7 6.8E-17 2.3E-21 167.3 15.4 112 23-154 2-122 (271)
69 2fn4_A P23, RAS-related protei 99.7 7.1E-17 2.4E-21 155.3 14.5 117 20-155 5-128 (181)
70 1mky_A Probable GTP-binding pr 99.7 4.8E-17 1.6E-21 180.1 15.1 113 25-154 2-123 (439)
71 2bme_A RAB4A, RAS-related prot 99.7 9.9E-17 3.4E-21 155.4 15.4 117 21-155 7-129 (186)
72 1z0j_A RAB-22, RAS-related pro 99.7 8.6E-17 2.9E-21 153.0 14.7 117 23-155 5-125 (170)
73 3bc1_A RAS-related protein RAB 99.7 8.1E-17 2.8E-21 156.7 14.9 119 20-155 7-141 (195)
74 2il1_A RAB12; G-protein, GDP, 99.7 4.7E-17 1.6E-21 159.2 13.2 118 20-155 22-145 (192)
75 3tkl_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 156.3 15.9 117 22-156 14-136 (196)
76 1ek0_A Protein (GTP-binding pr 99.7 1.1E-16 3.7E-21 152.2 15.2 117 24-156 3-123 (170)
77 1z06_A RAS-related protein RAB 99.7 6E-17 2E-21 157.8 13.6 119 21-155 17-141 (189)
78 2hup_A RAS-related protein RAB 99.7 1.2E-16 4E-21 157.7 15.8 120 18-155 23-148 (201)
79 2oil_A CATX-8, RAS-related pro 99.7 7.8E-17 2.7E-21 157.4 14.4 119 21-155 22-144 (193)
80 2hxs_A RAB-26, RAS-related pro 99.7 1.8E-16 6.3E-21 152.2 16.8 116 22-155 4-129 (178)
81 3dz8_A RAS-related protein RAB 99.7 4.2E-17 1.5E-21 159.2 12.3 118 22-155 21-142 (191)
82 2x77_A ADP-ribosylation factor 99.7 1.9E-17 6.4E-22 161.3 9.3 114 22-156 20-138 (189)
83 2y8e_A RAB-protein 6, GH09086P 99.7 1.3E-16 4.5E-21 153.1 14.8 115 23-155 13-133 (179)
84 2a5j_A RAS-related protein RAB 99.7 7.2E-17 2.5E-21 157.6 13.2 123 17-155 14-140 (191)
85 1moz_A ARL1, ADP-ribosylation 99.7 2.9E-17 1E-21 158.7 10.2 114 22-156 16-134 (183)
86 2erx_A GTP-binding protein DI- 99.7 3E-16 1E-20 149.4 16.7 115 24-155 3-123 (172)
87 1kao_A RAP2A; GTP-binding prot 99.7 1.9E-16 6.3E-21 150.0 15.2 115 24-155 3-122 (167)
88 1wms_A RAB-9, RAB9, RAS-relate 99.7 2E-16 6.9E-21 151.8 15.5 115 22-154 5-129 (177)
89 1f6b_A SAR1; gtpases, N-termin 99.7 1.2E-16 4.2E-21 157.2 14.3 111 24-155 25-140 (198)
90 1c1y_A RAS-related protein RAP 99.7 2.1E-16 7.1E-21 149.9 15.4 115 24-155 3-122 (167)
91 3tw8_B RAS-related protein RAB 99.7 5.7E-17 2E-21 155.9 11.6 117 21-155 6-127 (181)
92 2wji_A Ferrous iron transport 99.7 1.4E-16 4.7E-21 151.8 14.1 111 24-154 3-121 (165)
93 2a9k_A RAS-related protein RAL 99.7 4.2E-16 1.4E-20 150.7 17.6 115 22-155 16-137 (187)
94 2bov_A RAla, RAS-related prote 99.7 6.3E-16 2.1E-20 152.3 19.0 117 20-155 10-133 (206)
95 1u8z_A RAS-related protein RAL 99.7 6.3E-16 2.2E-20 146.4 18.2 113 24-155 4-123 (168)
96 1z2a_A RAS-related protein RAB 99.7 1E-16 3.4E-21 152.3 12.6 118 22-155 3-123 (168)
97 3gj0_A GTP-binding nuclear pro 99.7 2.3E-17 7.9E-22 165.1 8.4 124 17-156 8-134 (221)
98 4dsu_A GTPase KRAS, isoform 2B 99.7 3.7E-16 1.3E-20 151.5 16.6 114 23-155 3-123 (189)
99 2atx_A Small GTP binding prote 99.7 1.1E-16 3.6E-21 156.6 12.6 118 20-156 14-137 (194)
100 1g16_A RAS-related protein SEC 99.7 1E-16 3.5E-21 152.5 12.0 114 23-154 2-121 (170)
101 2g6b_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 150.7 15.8 117 22-155 8-130 (180)
102 3clv_A RAB5 protein, putative; 99.7 4.6E-16 1.6E-20 152.6 17.0 64 89-152 93-158 (208)
103 1ky3_A GTP-binding protein YPT 99.7 1.2E-16 4.2E-21 153.8 12.6 117 21-155 5-132 (182)
104 1x3s_A RAS-related protein RAB 99.7 1.3E-16 4.4E-21 155.7 12.9 117 23-155 14-135 (195)
105 3t5g_A GTP-binding protein RHE 99.7 4.5E-17 1.5E-21 157.2 9.4 114 23-155 5-125 (181)
106 2f7s_A C25KG, RAS-related prot 99.7 1.5E-16 5.2E-21 158.5 13.2 119 21-155 22-155 (217)
107 2gj8_A MNME, tRNA modification 99.7 3.4E-16 1.2E-20 150.4 15.2 114 24-154 4-128 (172)
108 2fu5_C RAS-related protein RAB 99.7 1E-16 3.5E-21 155.0 11.5 116 22-155 6-127 (183)
109 3o47_A ADP-ribosylation factor 99.7 1.9E-16 6.7E-21 168.3 14.7 114 23-157 164-282 (329)
110 2nzj_A GTP-binding protein REM 99.7 3.1E-16 1.1E-20 150.0 14.5 117 23-156 3-126 (175)
111 2ew1_A RAS-related protein RAB 99.7 2.1E-16 7.1E-21 156.0 13.6 117 21-155 23-145 (201)
112 1z08_A RAS-related protein RAB 99.7 1E-16 3.4E-21 152.7 10.9 118 22-155 4-125 (170)
113 3b1v_A Ferrous iron uptake tra 99.7 1E-16 3.5E-21 165.6 11.8 110 24-154 3-120 (272)
114 3cph_A RAS-related protein SEC 99.7 2.1E-16 7.2E-21 156.7 13.6 117 20-154 16-138 (213)
115 2fh5_B SR-beta, signal recogni 99.7 5.5E-16 1.9E-20 154.1 16.6 126 23-170 6-145 (214)
116 3llu_A RAS-related GTP-binding 99.7 6.1E-16 2.1E-20 151.7 16.4 121 17-156 13-144 (196)
117 1vg8_A RAS-related protein RAB 99.7 1.2E-16 4.3E-21 157.6 11.4 116 22-155 6-131 (207)
118 2bcg_Y Protein YP2, GTP-bindin 99.7 1.9E-16 6.6E-21 156.4 12.7 116 22-155 6-127 (206)
119 3q72_A GTP-binding protein RAD 99.7 2.3E-16 7.9E-21 149.7 12.5 115 24-156 2-121 (166)
120 2hjg_A GTP-binding protein ENG 99.7 9.7E-17 3.3E-21 177.5 11.2 115 24-155 3-125 (436)
121 2ce2_X GTPase HRAS; signaling 99.7 1.1E-15 3.6E-20 144.4 16.9 113 24-155 3-122 (166)
122 3oes_A GTPase rhebl1; small GT 99.7 6.5E-17 2.2E-21 159.3 8.6 119 20-155 20-143 (201)
123 3q85_A GTP-binding protein REM 99.7 4E-16 1.4E-20 148.5 13.7 116 24-155 2-123 (169)
124 3bwd_D RAC-like GTP-binding pr 99.7 1.1E-16 3.6E-21 154.5 9.6 117 23-156 7-127 (182)
125 2wjg_A FEOB, ferrous iron tran 99.7 6.4E-16 2.2E-20 150.0 15.1 112 23-154 6-125 (188)
126 2gf0_A GTP-binding protein DI- 99.7 1.2E-15 4.1E-20 149.4 17.1 116 23-155 7-128 (199)
127 2qu8_A Putative nucleolar GTP- 99.7 1.8E-15 6.2E-20 152.2 18.6 117 22-156 27-157 (228)
128 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.9E-16 1.3E-20 150.9 12.8 116 24-156 5-124 (186)
129 4gzl_A RAS-related C3 botulinu 99.7 3.4E-16 1.2E-20 154.7 12.3 116 22-156 28-149 (204)
130 2o52_A RAS-related protein RAB 99.7 2.5E-16 8.6E-21 155.1 10.5 116 22-155 23-144 (200)
131 1mky_A Probable GTP-binding pr 99.7 1.8E-15 6.1E-20 167.4 18.5 117 23-156 179-307 (439)
132 4dkx_A RAS-related protein RAB 99.6 1.3E-15 4.3E-20 152.0 15.3 118 22-155 11-132 (216)
133 3lxw_A GTPase IMAP family memb 99.6 9.7E-16 3.3E-20 156.3 14.5 121 22-159 19-157 (247)
134 3con_A GTPase NRAS; structural 99.6 2.1E-15 7.2E-20 146.7 16.2 113 24-155 21-140 (190)
135 3cpj_B GTP-binding protein YPT 99.6 4.1E-16 1.4E-20 156.3 11.5 116 22-155 11-132 (223)
136 3ihw_A Centg3; RAS, centaurin, 99.6 2.7E-15 9.3E-20 145.7 16.7 111 20-155 16-133 (184)
137 2q3h_A RAS homolog gene family 99.6 8.5E-16 2.9E-20 151.0 12.8 118 20-156 16-139 (201)
138 3reg_A RHO-like small GTPase; 99.6 9.9E-16 3.4E-20 149.7 12.9 118 22-156 21-142 (194)
139 2j0v_A RAC-like GTP-binding pr 99.6 5.4E-16 1.9E-20 153.9 11.1 117 23-156 8-128 (212)
140 4dcu_A GTP-binding protein ENG 99.6 4.1E-16 1.4E-20 173.4 11.4 116 23-155 22-145 (456)
141 2atv_A RERG, RAS-like estrogen 99.6 3.3E-15 1.1E-19 146.3 16.5 116 22-155 26-146 (196)
142 3gee_A MNME, tRNA modification 99.6 6.9E-16 2.4E-20 171.3 12.7 115 24-157 233-359 (476)
143 2j1l_A RHO-related GTP-binding 99.6 1.9E-15 6.6E-20 150.4 14.0 116 22-156 32-153 (214)
144 3lvq_E ARF-GAP with SH3 domain 99.6 1.7E-15 5.7E-20 170.6 15.3 114 22-156 320-438 (497)
145 2gco_A H9, RHO-related GTP-bin 99.6 1E-15 3.6E-20 150.7 11.9 117 23-156 24-144 (201)
146 4djt_A GTP-binding nuclear pro 99.6 2.6E-16 8.9E-21 156.9 7.6 116 22-155 9-131 (218)
147 2fv8_A H6, RHO-related GTP-bin 99.6 1.1E-15 3.9E-20 151.2 11.8 114 24-156 25-144 (207)
148 3cbq_A GTP-binding protein REM 99.6 5E-15 1.7E-19 145.3 16.1 117 21-155 20-144 (195)
149 2p67_A LAO/AO transport system 99.6 3.5E-16 1.2E-20 167.2 8.4 239 21-291 53-329 (341)
150 3c5c_A RAS-like protein 12; GD 99.6 2.4E-15 8.3E-20 146.3 13.4 117 21-155 18-141 (187)
151 3q3j_B RHO-related GTP-binding 99.6 1E-15 3.5E-20 152.5 10.6 119 21-156 24-146 (214)
152 3t5d_A Septin-7; GTP-binding p 99.6 2.3E-15 7.8E-20 156.0 13.6 199 24-244 8-267 (274)
153 1xzp_A Probable tRNA modificat 99.6 2.3E-15 7.8E-20 167.2 14.3 112 25-155 244-364 (482)
154 2yc2_C IFT27, small RAB-relate 99.6 4.2E-16 1.4E-20 153.7 7.0 117 23-155 19-146 (208)
155 3l0i_B RAS-related protein RAB 99.6 8.7E-17 3E-21 158.1 1.3 117 22-156 31-153 (199)
156 2cxx_A Probable GTP-binding pr 99.6 6.2E-15 2.1E-19 143.0 12.9 122 25-169 2-149 (190)
157 2aka_B Dynamin-1; fusion prote 99.6 7.1E-15 2.4E-19 154.0 14.3 146 11-156 13-207 (299)
158 2iwr_A Centaurin gamma 1; ANK 99.6 1.8E-14 6E-19 138.5 15.9 109 23-154 6-121 (178)
159 1jwy_B Dynamin A GTPase domain 99.6 7E-15 2.4E-19 155.4 13.9 70 87-156 129-213 (315)
160 1m7b_A RND3/RHOE small GTP-bin 99.6 3.5E-15 1.2E-19 144.6 10.0 117 22-155 5-125 (184)
161 3geh_A MNME, tRNA modification 99.6 1.7E-15 5.9E-20 167.5 8.6 114 25-157 225-346 (462)
162 1gwn_A RHO-related GTP-binding 99.6 4E-15 1.4E-19 147.3 9.1 118 21-155 25-146 (205)
163 3lxx_A GTPase IMAP family memb 99.6 1.6E-15 5.6E-20 153.8 5.9 138 19-173 24-185 (239)
164 3r7w_A Gtpase1, GTP-binding pr 99.6 3.9E-14 1.3E-18 149.1 16.3 116 24-156 3-130 (307)
165 1lnz_A SPO0B-associated GTP-bi 99.6 4.9E-15 1.7E-19 157.6 9.4 114 24-155 158-288 (342)
166 3th5_A RAS-related C3 botulinu 99.3 4E-16 1.4E-20 153.9 0.0 118 22-156 28-149 (204)
167 2e87_A Hypothetical protein PH 99.5 1.8E-13 6.1E-18 147.3 19.0 116 23-156 166-295 (357)
168 2qtf_A Protein HFLX, GTP-bindi 99.5 8.3E-14 2.8E-18 149.6 15.5 117 23-157 178-308 (364)
169 2wkq_A NPH1-1, RAS-related C3 99.5 3.4E-14 1.2E-18 150.8 12.0 115 23-156 154-274 (332)
170 1nrj_B SR-beta, signal recogni 99.5 1.2E-13 4.2E-18 137.4 14.5 114 22-157 10-136 (218)
171 3dpu_A RAB family protein; roc 99.5 3.2E-14 1.1E-18 161.4 10.5 118 21-156 38-165 (535)
172 2zej_A Dardarin, leucine-rich 99.5 6.2E-14 2.1E-18 135.9 9.7 118 25-156 3-127 (184)
173 2g3y_A GTP-binding protein GEM 99.5 2.1E-13 7.3E-18 135.3 13.7 117 22-155 35-159 (211)
174 3def_A T7I23.11 protein; chlor 99.4 4.5E-13 1.5E-17 137.7 13.2 116 23-155 35-165 (262)
175 3p32_A Probable GTPase RV1496/ 99.4 1.9E-13 6.5E-18 146.9 10.7 127 22-155 77-231 (355)
176 2cjw_A GTP-binding protein GEM 99.4 8.3E-13 2.9E-17 129.0 14.2 116 23-155 5-128 (192)
177 2f9l_A RAB11B, member RAS onco 99.4 5.9E-13 2E-17 130.6 13.2 114 24-155 5-124 (199)
178 2ged_A SR-beta, signal recogni 99.4 1.6E-13 5.4E-18 133.7 8.7 127 21-169 45-185 (193)
179 2j69_A Bacterial dynamin-like 99.4 7.8E-13 2.7E-17 153.8 16.0 67 89-155 174-244 (695)
180 1pui_A ENGB, probable GTP-bind 99.4 1.3E-12 4.4E-17 129.0 14.6 119 19-156 21-152 (210)
181 1h65_A Chloroplast outer envel 99.4 2.1E-12 7.1E-17 133.4 15.1 117 23-156 38-169 (270)
182 2qag_A Septin-2, protein NEDD5 99.4 9.7E-13 3.3E-17 141.4 12.0 123 24-156 37-189 (361)
183 2x2e_A Dynamin-1; nitration, h 99.4 7.2E-13 2.5E-17 142.3 9.6 135 22-156 29-212 (353)
184 1oix_A RAS-related protein RAB 99.4 2.4E-12 8.3E-17 125.5 12.5 116 22-155 27-148 (191)
185 2wsm_A Hydrogenase expression/ 99.4 9.4E-13 3.2E-17 131.3 9.5 124 22-154 28-167 (221)
186 2qpt_A EH domain-containing pr 99.4 1.6E-12 5.6E-17 147.0 12.1 145 20-165 61-243 (550)
187 3c5h_A Glucocorticoid receptor 99.3 1.3E-12 4.5E-17 133.7 9.1 44 112-155 162-212 (255)
188 4a9a_A Ribosome-interacting GT 99.3 2.1E-11 7.3E-16 130.5 17.6 135 24-177 72-228 (376)
189 3r7w_B Gtpase2, GTP-binding pr 99.3 1.2E-11 4.2E-16 129.3 15.3 113 26-157 1-122 (331)
190 3zvr_A Dynamin-1; hydrolase, D 99.3 5.7E-12 2E-16 145.5 12.7 134 23-156 50-232 (772)
191 1udx_A The GTP-binding protein 99.3 2.5E-11 8.4E-16 132.1 14.9 115 24-156 157-284 (416)
192 1wxq_A GTP-binding protein; st 99.3 1.2E-12 4.3E-17 142.0 4.6 82 26-125 2-114 (397)
193 2www_A Methylmalonic aciduria 99.2 4.3E-11 1.5E-15 128.0 13.6 62 87-155 165-226 (349)
194 3t34_A Dynamin-related protein 99.2 7.7E-11 2.6E-15 126.8 12.8 134 23-156 33-218 (360)
195 1yrb_A ATP(GTP)binding protein 99.2 4E-11 1.4E-15 122.8 9.8 134 22-156 12-186 (262)
196 2j37_W Signal recognition part 99.1 6.6E-11 2.3E-15 131.5 7.6 216 22-266 99-343 (504)
197 1jal_A YCHF protein; nucleotid 99.0 4.2E-09 1.5E-13 112.0 13.9 82 25-124 3-108 (363)
198 2qm8_A GTPase/ATPase; G protei 98.9 2.6E-09 8.8E-14 113.6 11.4 127 21-155 52-207 (337)
199 2xxa_A Signal recognition part 98.9 2E-08 6.8E-13 110.0 16.8 217 22-268 98-347 (433)
200 2qnr_A Septin-2, protein NEDD5 98.9 5.7E-09 1.9E-13 109.1 11.9 121 24-155 18-169 (301)
201 2qag_C Septin-7; cell cycle, c 98.9 1.3E-08 4.6E-13 110.6 14.1 118 24-155 31-181 (418)
202 2hf9_A Probable hydrogenase ni 98.9 8.8E-09 3E-13 102.6 11.3 123 23-154 37-177 (226)
203 2dby_A GTP-binding protein; GD 98.8 5.6E-08 1.9E-12 104.0 17.3 82 25-124 2-111 (368)
204 3kl4_A SRP54, signal recogniti 98.7 1.2E-07 4.2E-12 103.2 15.7 213 23-266 96-344 (433)
205 2qag_B Septin-6, protein NEDD5 98.7 8.9E-08 3E-12 103.8 13.3 136 21-171 39-207 (427)
206 3ec1_A YQEH GTPase; atnos1, at 98.6 5.3E-09 1.8E-13 112.6 0.8 131 24-171 162-305 (369)
207 3h2y_A GTPase family protein; 98.6 9.3E-09 3.2E-13 110.5 2.0 133 25-172 161-305 (368)
208 3e1y_E Eukaryotic peptide chai 98.6 9.2E-08 3.2E-12 93.8 8.0 85 320-410 3-91 (204)
209 3sop_A Neuronal-specific septi 98.5 4E-07 1.4E-11 93.4 12.3 136 25-169 3-169 (270)
210 1cip_A Protein (guanine nucleo 98.5 1.2E-07 4.2E-12 100.9 7.1 81 74-154 178-273 (353)
211 1tq4_A IIGP1, interferon-induc 98.5 2.9E-06 9.8E-11 91.9 16.7 114 24-154 69-188 (413)
212 2ohf_A Protein OLA1, GTP-bindi 98.4 2E-07 6.7E-12 100.2 7.4 84 23-124 21-128 (396)
213 2v3c_C SRP54, signal recogniti 98.4 4.9E-07 1.7E-11 98.9 10.1 145 23-172 98-267 (432)
214 1zcb_A G alpha I/13; GTP-bindi 98.4 2.6E-07 9E-12 98.7 6.7 80 75-154 187-281 (362)
215 3dm5_A SRP54, signal recogniti 98.4 1.2E-05 4.2E-10 87.4 19.3 131 23-155 99-253 (443)
216 4fid_A G protein alpha subunit 98.2 8E-07 2.7E-11 93.6 5.6 83 73-155 145-242 (340)
217 1u0l_A Probable GTPase ENGC; p 98.2 1.1E-06 3.6E-11 91.9 6.0 64 90-155 64-129 (301)
218 1azs_C GS-alpha; complex (lyas 98.2 4.2E-07 1.4E-11 98.0 2.9 79 76-154 204-297 (402)
219 3ohm_A Guanine nucleotide-bind 98.2 9.2E-07 3.2E-11 92.8 5.0 83 73-155 151-248 (327)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 3.8E-06 1.3E-10 90.4 9.0 86 22-124 18-127 (392)
221 4dzz_A Plasmid partitioning pr 98.1 1.4E-05 4.6E-10 78.0 11.8 143 25-172 2-160 (206)
222 1j8m_F SRP54, signal recogniti 98.1 5E-06 1.7E-10 86.4 8.7 143 24-171 98-267 (297)
223 2xtz_A Guanine nucleotide-bind 98.1 2.2E-06 7.5E-11 91.2 4.6 68 87-154 181-263 (354)
224 1puj_A YLQF, conserved hypothe 98.0 7.8E-06 2.7E-10 84.3 8.3 61 93-155 3-64 (282)
225 3l82_B F-box only protein 4; T 98.0 1.9E-05 6.4E-10 76.4 9.9 67 90-156 97-178 (227)
226 1f5n_A Interferon-induced guan 98.0 3.4E-06 1.2E-10 95.2 5.5 104 22-140 36-148 (592)
227 3cwq_A Para family chromosome 97.8 7.3E-05 2.5E-09 73.4 10.9 142 26-172 2-151 (209)
228 3l2o_B F-box only protein 4; s 97.7 0.00014 4.8E-09 73.8 11.1 60 97-156 195-263 (312)
229 3ec1_A YQEH GTPase; atnos1, at 97.7 8.3E-05 2.8E-09 79.7 9.6 64 90-156 50-113 (369)
230 2ph1_A Nucleotide-binding prot 97.7 0.00042 1.5E-08 70.3 13.9 86 87-172 127-221 (262)
231 3szr_A Interferon-induced GTP- 97.7 0.00015 5E-09 83.0 11.2 69 88-156 146-229 (608)
232 2yhs_A FTSY, cell division pro 97.6 0.00021 7.3E-09 78.4 11.5 145 22-171 291-466 (503)
233 1zu4_A FTSY; GTPase, signal re 97.6 0.00016 5.4E-09 75.8 10.0 144 22-172 103-283 (320)
234 1puj_A YLQF, conserved hypothe 97.6 4.9E-05 1.7E-09 78.3 6.0 59 23-101 119-177 (282)
235 3e70_C DPA, signal recognition 97.6 0.0001 3.5E-09 77.5 8.5 126 22-154 127-281 (328)
236 2yv5_A YJEQ protein; hydrolase 97.6 0.00011 3.9E-09 76.4 8.5 50 107-156 74-125 (302)
237 3cnl_A YLQF, putative uncharac 97.5 5.6E-05 1.9E-09 77.0 4.5 55 97-155 5-60 (262)
238 3h2y_A GTPase family protein; 97.5 0.00015 5.1E-09 77.7 7.8 57 98-156 55-111 (368)
239 1wcv_1 SOJ, segregation protei 97.5 0.00017 6E-09 73.0 7.8 84 87-172 110-200 (257)
240 2ffh_A Protein (FFH); SRP54, s 97.5 0.00037 1.3E-08 75.7 10.4 145 23-172 97-266 (425)
241 2oze_A ORF delta'; para, walke 97.5 0.00048 1.6E-08 71.2 10.9 83 87-171 153-242 (298)
242 3end_A Light-independent proto 97.4 0.00066 2.2E-08 70.6 10.6 82 87-174 155-241 (307)
243 1rj9_A FTSY, signal recognitio 97.3 0.00069 2.4E-08 70.4 10.4 145 23-172 101-276 (304)
244 1vma_A Cell division protein F 97.3 0.00042 1.4E-08 72.0 8.8 146 22-172 102-278 (306)
245 1g3q_A MIND ATPase, cell divis 97.3 0.0011 3.8E-08 65.8 11.6 82 87-172 110-192 (237)
246 3kjh_A CO dehydrogenase/acetyl 97.3 0.00043 1.5E-08 69.3 8.3 86 87-179 130-216 (254)
247 1hyq_A MIND, cell division inh 97.3 0.0013 4.3E-08 66.6 11.5 82 87-172 109-191 (263)
248 3k9g_A PF-32 protein; ssgcid, 97.3 0.001 3.5E-08 67.5 10.9 77 87-166 143-221 (267)
249 1xe1_A Hypothetical protein PF 97.2 0.0017 5.8E-08 56.1 9.9 78 321-406 32-113 (116)
250 3cnl_A YLQF, putative uncharac 97.2 0.00013 4.5E-09 74.2 3.2 58 25-102 100-157 (262)
251 3q9l_A Septum site-determining 97.2 0.00065 2.2E-08 68.5 8.0 83 88-172 113-206 (260)
252 2px0_A Flagellar biosynthesis 97.2 0.00071 2.4E-08 70.0 8.3 129 23-155 104-253 (296)
253 1ls1_A Signal recognition part 97.1 0.0018 6.3E-08 66.9 10.5 145 23-172 97-266 (295)
254 2xj4_A MIPZ; replication, cell 97.1 0.00045 1.5E-08 71.2 5.6 82 88-171 103-212 (286)
255 3cio_A ETK, tyrosine-protein k 96.9 0.0034 1.2E-07 65.0 10.3 67 88-155 213-280 (299)
256 3b9q_A Chloroplast SRP recepto 96.8 0.0057 1.9E-07 63.4 11.6 128 22-154 98-259 (302)
257 3bfv_A CAPA1, CAPB2, membrane 96.8 0.004 1.4E-07 63.5 10.1 67 88-155 191-258 (271)
258 3ea0_A ATPase, para family; al 96.8 0.012 4E-07 58.5 13.3 80 88-172 118-200 (245)
259 3q5d_A Atlastin-1; G protein, 96.8 0.0033 1.1E-07 68.6 9.7 26 22-47 65-90 (447)
260 3la6_A Tyrosine-protein kinase 96.7 0.006 2.1E-07 62.7 10.1 68 88-156 201-269 (286)
261 2og2_A Putative signal recogni 96.6 0.008 2.7E-07 63.7 10.7 129 22-154 155-316 (359)
262 1t9h_A YLOQ, probable GTPase E 96.5 0.0014 4.7E-08 68.0 4.3 48 109-156 83-132 (307)
263 1cp2_A CP2, nitrogenase iron p 96.4 0.015 5.3E-07 58.7 11.4 85 87-173 114-204 (269)
264 2afh_E Nitrogenase iron protei 96.3 0.02 6.7E-07 58.7 11.0 90 87-179 117-212 (289)
265 2cve_A Hypothetical protein TT 96.1 0.04 1.4E-06 52.2 11.4 112 570-684 79-190 (191)
266 3of5_A Dethiobiotin synthetase 95.8 0.064 2.2E-06 52.9 12.0 87 87-173 109-201 (228)
267 3ug7_A Arsenical pump-driving 95.8 0.15 5.1E-06 53.8 15.3 67 113-180 237-314 (349)
268 1vi7_A Hypothetical protein YI 95.7 0.029 1E-06 54.3 8.4 111 571-684 92-202 (217)
269 2rcn_A Probable GTPase ENGC; Y 95.5 0.031 1E-06 59.1 8.4 47 109-156 127-175 (358)
270 1d1n_A Initiation factor 2; be 95.5 0.022 7.4E-07 47.8 5.7 75 327-405 10-89 (99)
271 3ez2_A Plasmid partition prote 95.4 0.026 8.9E-07 60.7 7.8 90 87-179 243-344 (398)
272 1nij_A Hypothetical protein YJ 95.3 0.048 1.7E-06 56.7 9.5 25 23-47 3-27 (318)
273 3zq6_A Putative arsenical pump 95.2 0.24 8.4E-06 51.5 14.4 66 114-180 223-299 (324)
274 1t9h_A YLOQ, probable GTPase E 95.2 0.0052 1.8E-07 63.7 1.5 22 24-45 173-194 (307)
275 2yv5_A YJEQ protein; hydrolase 95.0 0.025 8.7E-07 58.4 6.1 21 25-45 166-186 (302)
276 3fgn_A Dethiobiotin synthetase 95.0 0.53 1.8E-05 47.0 15.4 82 87-168 125-214 (251)
277 1bif_A 6-phosphofructo-2-kinas 94.8 0.024 8.2E-07 62.5 5.5 108 23-147 38-155 (469)
278 4ido_A Atlastin-1; GTPase, GTP 94.7 0.11 3.8E-06 56.3 10.2 114 21-137 64-193 (457)
279 3zvl_A Bifunctional polynucleo 94.5 0.071 2.4E-06 57.7 8.3 26 22-47 256-281 (416)
280 2crv_A IF-2MT, translation ini 94.4 0.087 3E-06 45.7 6.9 72 327-405 17-97 (120)
281 1byi_A Dethiobiotin synthase; 94.3 0.2 6.9E-06 48.6 10.5 95 87-182 107-207 (224)
282 1kgd_A CASK, peripheral plasma 94.3 0.026 8.9E-07 53.4 3.7 24 24-47 5-28 (180)
283 1ye8_A Protein THEP1, hypothet 94.0 0.028 9.4E-07 53.3 3.3 24 25-48 1-24 (178)
284 1lvg_A Guanylate kinase, GMP k 94.0 0.024 8.2E-07 54.6 2.9 23 24-46 4-26 (198)
285 3ney_A 55 kDa erythrocyte memb 94.0 0.033 1.1E-06 53.7 3.8 30 19-48 14-43 (197)
286 2yvu_A Probable adenylyl-sulfa 93.8 0.35 1.2E-05 45.5 10.7 24 23-46 12-35 (186)
287 1knq_A Gluconate kinase; ALFA/ 93.7 0.052 1.8E-06 50.7 4.5 27 23-49 7-33 (175)
288 3c8u_A Fructokinase; YP_612366 93.5 0.044 1.5E-06 53.1 3.8 24 22-45 20-43 (208)
289 3iqw_A Tail-anchored protein t 93.5 0.66 2.3E-05 48.4 13.0 58 114-171 223-293 (334)
290 3a00_A Guanylate kinase, GMP k 93.4 0.034 1.2E-06 52.8 2.8 23 25-47 2-24 (186)
291 2woo_A ATPase GET3; tail-ancho 93.3 0.73 2.5E-05 48.0 13.1 65 114-179 222-298 (329)
292 3lh2_S 4E10_1VI7A_S0_002_N (T8 93.3 0.046 1.6E-06 43.8 2.9 62 620-683 8-69 (76)
293 3tr0_A Guanylate kinase, GMP k 93.2 0.052 1.8E-06 52.1 3.7 24 24-47 7-30 (205)
294 1zp6_A Hypothetical protein AT 93.2 0.053 1.8E-06 51.4 3.7 23 23-45 8-30 (191)
295 1znw_A Guanylate kinase, GMP k 93.0 0.054 1.8E-06 52.4 3.5 26 22-47 18-43 (207)
296 1ihu_A Arsenical pump-driving 93.0 0.3 1E-05 55.3 10.2 40 115-154 200-240 (589)
297 2cvh_A DNA repair and recombin 93.0 0.51 1.8E-05 45.4 10.6 23 24-46 20-42 (220)
298 3tau_A Guanylate kinase, GMP k 92.8 0.065 2.2E-06 51.9 3.7 25 24-48 8-32 (208)
299 1kag_A SKI, shikimate kinase I 92.7 0.063 2.2E-06 49.9 3.4 25 25-49 5-29 (173)
300 3asz_A Uridine kinase; cytidin 92.6 0.065 2.2E-06 51.8 3.5 24 23-46 5-28 (211)
301 3lw7_A Adenylate kinase relate 92.6 0.072 2.5E-06 49.3 3.7 24 25-49 2-25 (179)
302 4gp7_A Metallophosphoesterase; 92.6 0.058 2E-06 50.5 3.0 22 24-45 9-30 (171)
303 1np6_A Molybdopterin-guanine d 92.6 0.071 2.4E-06 50.2 3.6 24 24-47 6-29 (174)
304 3io3_A DEHA2D07832P; chaperone 92.6 1.3 4.4E-05 46.5 13.7 57 114-170 232-302 (348)
305 3kb2_A SPBC2 prophage-derived 92.6 0.069 2.4E-06 49.5 3.5 25 25-49 2-26 (173)
306 1xjc_A MOBB protein homolog; s 92.5 0.069 2.3E-06 50.1 3.4 24 23-46 3-26 (169)
307 1z6g_A Guanylate kinase; struc 92.5 0.058 2E-06 52.8 3.0 24 23-46 22-45 (218)
308 1s96_A Guanylate kinase, GMP k 92.5 0.071 2.4E-06 52.3 3.6 24 24-47 16-39 (219)
309 4eun_A Thermoresistant glucoki 92.5 0.08 2.7E-06 50.8 3.9 27 24-50 29-55 (200)
310 2p5t_B PEZT; postsegregational 92.4 0.34 1.2E-05 48.3 8.6 29 21-49 29-57 (253)
311 1ukz_A Uridylate kinase; trans 92.4 0.11 3.8E-06 49.7 4.8 30 20-49 11-40 (203)
312 2j41_A Guanylate kinase; GMP, 92.3 0.077 2.6E-06 50.9 3.5 23 24-46 6-28 (207)
313 1htw_A HI0065; nucleotide-bind 92.1 0.094 3.2E-06 48.5 3.7 26 22-47 31-56 (158)
314 1uf9_A TT1252 protein; P-loop, 92.1 0.09 3.1E-06 50.2 3.7 26 22-47 6-31 (203)
315 1ihu_A Arsenical pump-driving 92.1 0.2 6.9E-06 56.7 7.2 60 112-171 489-560 (589)
316 2ghi_A Transport protein; mult 92.0 0.11 3.8E-06 52.3 4.5 23 23-45 45-67 (260)
317 4fcw_A Chaperone protein CLPB; 91.9 0.8 2.7E-05 46.7 11.0 24 24-47 47-70 (311)
318 3vaa_A Shikimate kinase, SK; s 91.9 0.1 3.5E-06 50.0 3.8 27 23-49 24-50 (199)
319 2rcn_A Probable GTPase ENGC; Y 91.8 0.084 2.9E-06 55.7 3.3 21 25-45 216-236 (358)
320 1y63_A LMAJ004144AAA protein; 91.8 0.13 4.3E-06 48.7 4.3 25 23-47 9-33 (184)
321 2qor_A Guanylate kinase; phosp 91.8 0.085 2.9E-06 50.8 3.1 25 24-48 12-36 (204)
322 1ex7_A Guanylate kinase; subst 91.7 0.089 3E-06 50.1 3.2 24 25-48 2-25 (186)
323 2bdt_A BH3686; alpha-beta prot 91.6 0.095 3.2E-06 49.6 3.3 22 25-46 3-24 (189)
324 2vhj_A Ntpase P4, P4; non- hyd 91.6 0.23 8E-06 51.3 6.3 23 25-47 124-146 (331)
325 3tif_A Uncharacterized ABC tra 91.6 0.088 3E-06 52.2 3.1 24 22-45 29-52 (235)
326 3t61_A Gluconokinase; PSI-biol 91.6 0.1 3.5E-06 50.0 3.5 26 24-49 18-43 (202)
327 2bbw_A Adenylate kinase 4, AK4 91.6 0.11 3.7E-06 51.7 3.8 28 24-51 27-54 (246)
328 3aez_A Pantothenate kinase; tr 91.5 0.12 4E-06 53.6 4.1 24 22-45 88-111 (312)
329 2f1r_A Molybdopterin-guanine d 91.5 0.051 1.7E-06 51.1 1.2 21 25-45 3-23 (171)
330 2qt1_A Nicotinamide riboside k 91.5 0.13 4.3E-06 49.6 4.0 25 22-46 19-43 (207)
331 3ez9_A Para; DNA binding, wing 91.4 0.26 8.8E-06 53.0 6.8 90 87-179 246-347 (403)
332 2pcj_A ABC transporter, lipopr 91.4 0.099 3.4E-06 51.4 3.2 22 24-45 30-51 (224)
333 1jjv_A Dephospho-COA kinase; P 91.4 0.1 3.6E-06 50.1 3.3 21 25-45 3-23 (206)
334 1ly1_A Polynucleotide kinase; 91.4 0.11 3.7E-06 48.5 3.3 22 25-46 3-24 (181)
335 3n70_A Transport activator; si 91.4 0.35 1.2E-05 43.6 6.7 23 24-46 24-46 (145)
336 1cke_A CK, MSSA, protein (cyti 91.3 0.11 3.9E-06 50.5 3.5 25 25-49 6-30 (227)
337 3umf_A Adenylate kinase; rossm 91.3 0.16 5.5E-06 49.6 4.6 31 20-50 25-55 (217)
338 2if2_A Dephospho-COA kinase; a 91.3 0.1 3.5E-06 50.0 3.1 22 25-46 2-23 (204)
339 2qi9_C Vitamin B12 import ATP- 91.2 0.14 4.9E-06 51.2 4.2 22 24-45 26-47 (249)
340 3bos_A Putative DNA replicatio 91.2 0.12 4.2E-06 50.4 3.8 25 23-47 51-75 (242)
341 3iij_A Coilin-interacting nucl 91.1 0.14 4.7E-06 48.1 3.8 27 23-49 10-36 (180)
342 3trf_A Shikimate kinase, SK; a 91.1 0.12 4.3E-06 48.5 3.5 26 24-49 5-30 (185)
343 2v9p_A Replication protein E1; 91.1 0.11 3.9E-06 53.5 3.4 25 22-46 124-148 (305)
344 3cm0_A Adenylate kinase; ATP-b 91.1 0.14 4.9E-06 48.0 4.0 26 24-49 4-29 (186)
345 1zo1_I IF2, translation initia 91.1 0.55 1.9E-05 51.8 9.1 75 328-406 413-492 (501)
346 2jaq_A Deoxyguanosine kinase; 91.1 0.13 4.4E-06 49.0 3.6 24 26-49 2-25 (205)
347 3uie_A Adenylyl-sulfate kinase 91.0 0.13 4.5E-06 49.3 3.6 23 24-46 25-47 (200)
348 2eyu_A Twitching motility prot 91.0 0.14 4.7E-06 51.7 3.8 23 23-45 24-46 (261)
349 2onk_A Molybdate/tungstate ABC 90.9 0.13 4.4E-06 51.2 3.5 21 25-45 25-45 (240)
350 3b85_A Phosphate starvation-in 90.8 0.11 3.7E-06 50.5 2.8 21 25-45 23-43 (208)
351 1uj2_A Uridine-cytidine kinase 90.8 0.16 5.4E-06 50.7 4.1 28 22-49 20-47 (252)
352 3tqc_A Pantothenate kinase; bi 90.8 0.15 5.1E-06 53.0 4.0 27 21-47 89-115 (321)
353 3fkq_A NTRC-like two-domain pr 90.8 1.3 4.6E-05 46.8 11.6 36 87-124 258-293 (373)
354 1nks_A Adenylate kinase; therm 90.8 0.13 4.6E-06 48.4 3.4 24 25-48 2-25 (194)
355 1rz3_A Hypothetical protein rb 90.8 0.16 5.3E-06 48.9 3.9 25 22-46 20-44 (201)
356 2rhm_A Putative kinase; P-loop 90.8 0.16 5.6E-06 47.9 4.0 26 24-49 5-30 (193)
357 3hr8_A Protein RECA; alpha and 90.7 0.58 2E-05 49.2 8.5 24 24-47 61-84 (356)
358 4g1u_C Hemin import ATP-bindin 90.7 0.12 4E-06 52.4 3.0 23 23-45 36-58 (266)
359 3gd7_A Fusion complex of cysti 90.7 0.23 7.9E-06 53.0 5.4 31 24-57 47-77 (390)
360 1qhx_A CPT, protein (chloramph 90.6 0.16 5.5E-06 47.3 3.8 25 25-49 4-28 (178)
361 2pze_A Cystic fibrosis transme 90.6 0.13 4.4E-06 50.8 3.2 22 24-45 34-55 (229)
362 3lnc_A Guanylate kinase, GMP k 90.6 0.097 3.3E-06 51.5 2.2 23 23-45 26-48 (231)
363 3dl0_A Adenylate kinase; phosp 90.6 0.15 5.3E-06 49.3 3.7 24 26-49 2-25 (216)
364 3fb4_A Adenylate kinase; psych 90.6 0.15 5E-06 49.4 3.5 24 26-49 2-25 (216)
365 3gfo_A Cobalt import ATP-bindi 90.5 0.13 4.4E-06 52.3 3.2 25 24-51 34-58 (275)
366 1g6h_A High-affinity branched- 90.5 0.13 4.4E-06 51.8 3.1 23 23-45 32-54 (257)
367 1tev_A UMP-CMP kinase; ploop, 90.5 0.17 5.8E-06 47.8 3.8 26 24-49 3-28 (196)
368 2d2e_A SUFC protein; ABC-ATPas 90.5 0.14 4.6E-06 51.3 3.3 22 24-45 29-50 (250)
369 1sgw_A Putative ABC transporte 90.5 0.13 4.3E-06 50.3 2.9 22 24-45 35-56 (214)
370 1mv5_A LMRA, multidrug resista 90.5 0.16 5.3E-06 50.6 3.7 23 23-45 27-49 (243)
371 1odf_A YGR205W, hypothetical 3 90.5 0.17 5.6E-06 51.9 3.9 25 22-46 29-53 (290)
372 2ff7_A Alpha-hemolysin translo 90.5 0.13 4.5E-06 51.3 3.1 22 24-45 35-56 (247)
373 2i3b_A HCR-ntpase, human cance 90.5 0.14 4.8E-06 48.9 3.1 21 26-46 3-23 (189)
374 2cbz_A Multidrug resistance-as 90.4 0.15 5E-06 50.6 3.4 23 23-45 30-52 (237)
375 2jeo_A Uridine-cytidine kinase 90.4 0.18 6.1E-06 50.1 4.1 28 22-49 23-50 (245)
376 2c95_A Adenylate kinase 1; tra 90.4 0.17 6E-06 47.8 3.8 26 24-49 9-34 (196)
377 1aky_A Adenylate kinase; ATP:A 90.4 0.17 5.7E-06 49.2 3.8 27 23-49 3-29 (220)
378 1sq5_A Pantothenate kinase; P- 90.3 0.17 5.9E-06 52.2 4.0 25 22-46 78-102 (308)
379 2ehv_A Hypothetical protein PH 90.3 0.15 5.1E-06 50.4 3.3 23 23-45 29-51 (251)
380 1ji0_A ABC transporter; ATP bi 90.3 0.14 4.8E-06 50.9 3.1 22 24-45 32-53 (240)
381 1b0u_A Histidine permease; ABC 90.2 0.16 5.3E-06 51.3 3.5 23 23-45 31-53 (262)
382 3ec2_A DNA replication protein 90.2 0.13 4.3E-06 48.4 2.6 22 24-45 38-59 (180)
383 4e22_A Cytidylate kinase; P-lo 90.2 0.19 6.6E-06 50.2 4.1 27 24-50 27-53 (252)
384 1sxj_A Activator 1 95 kDa subu 90.1 1.3 4.3E-05 49.2 11.1 27 23-49 76-102 (516)
385 1via_A Shikimate kinase; struc 90.1 0.16 5.4E-06 47.4 3.2 25 25-49 5-29 (175)
386 1kht_A Adenylate kinase; phosp 90.0 0.16 5.4E-06 47.8 3.2 24 25-48 4-27 (192)
387 2zu0_C Probable ATP-dependent 90.0 0.16 5.5E-06 51.3 3.3 23 23-45 45-67 (267)
388 2wwf_A Thymidilate kinase, put 90.0 0.19 6.5E-06 48.3 3.8 24 24-47 10-33 (212)
389 2olj_A Amino acid ABC transpor 90.0 0.17 5.8E-06 51.0 3.5 23 23-45 49-71 (263)
390 2plr_A DTMP kinase, probable t 90.0 0.2 7E-06 47.9 4.0 26 24-49 4-29 (213)
391 1vpl_A ABC transporter, ATP-bi 90.0 0.16 5.3E-06 51.1 3.2 23 23-45 40-62 (256)
392 3pfi_A Holliday junction ATP-d 89.9 0.97 3.3E-05 46.8 9.4 25 24-48 55-79 (338)
393 4a74_A DNA repair and recombin 89.9 0.15 5.3E-06 49.5 3.0 22 24-45 25-46 (231)
394 2cdn_A Adenylate kinase; phosp 89.8 0.23 7.8E-06 47.5 4.1 28 22-49 18-45 (201)
395 1u0l_A Probable GTPase ENGC; p 89.8 0.16 5.4E-06 52.4 3.1 21 25-45 170-190 (301)
396 2vli_A Antibiotic resistance p 89.7 0.16 5.4E-06 47.6 2.9 26 24-49 5-30 (183)
397 4a1f_A DNAB helicase, replicat 89.7 0.23 7.9E-06 51.9 4.3 24 24-47 46-69 (338)
398 3izy_P Translation initiation 89.7 1.1 3.9E-05 49.7 10.1 79 325-404 449-533 (537)
399 2v54_A DTMP kinase, thymidylat 89.7 0.19 6.6E-06 47.9 3.5 24 24-47 4-27 (204)
400 1zd8_A GTP:AMP phosphotransfer 89.7 0.21 7.1E-06 48.9 3.8 26 24-49 7-32 (227)
401 1qf9_A UMP/CMP kinase, protein 89.7 0.26 8.8E-06 46.4 4.4 26 24-49 6-31 (194)
402 2pjz_A Hypothetical protein ST 89.6 0.24 8E-06 50.0 4.2 22 24-45 30-51 (263)
403 2ihy_A ABC transporter, ATP-bi 89.6 0.17 5.8E-06 51.5 3.2 22 24-45 47-68 (279)
404 2yz2_A Putative ABC transporte 89.6 0.17 5.7E-06 51.2 3.1 23 23-45 32-54 (266)
405 1zuh_A Shikimate kinase; alpha 89.5 0.21 7.2E-06 46.1 3.5 27 23-49 6-32 (168)
406 2zr9_A Protein RECA, recombina 89.5 0.61 2.1E-05 49.0 7.5 24 23-46 60-83 (349)
407 2kjq_A DNAA-related protein; s 89.5 0.16 5.6E-06 46.3 2.7 24 23-46 35-58 (149)
408 3tlx_A Adenylate kinase 2; str 89.4 0.24 8.2E-06 49.2 4.1 27 23-49 28-54 (243)
409 2nq2_C Hypothetical ABC transp 89.4 0.18 6.1E-06 50.6 3.1 22 24-45 31-52 (253)
410 2vp4_A Deoxynucleoside kinase; 89.4 0.19 6.6E-06 49.4 3.3 27 20-46 16-42 (230)
411 2bwj_A Adenylate kinase 5; pho 89.4 0.21 7.3E-06 47.3 3.5 25 25-49 13-37 (199)
412 2ixe_A Antigen peptide transpo 89.4 0.2 6.7E-06 50.8 3.4 23 23-45 44-66 (271)
413 1d2n_A N-ethylmaleimide-sensit 89.3 2 6.9E-05 42.9 11.0 26 22-47 62-87 (272)
414 2pt5_A Shikimate kinase, SK; a 89.3 0.23 7.8E-06 45.8 3.6 24 26-49 2-25 (168)
415 1vht_A Dephospho-COA kinase; s 89.3 0.23 7.9E-06 48.1 3.8 23 24-46 4-26 (218)
416 2gza_A Type IV secretion syste 89.3 0.16 5.6E-06 53.7 2.8 22 24-45 175-196 (361)
417 1nn5_A Similar to deoxythymidy 89.2 0.21 7.3E-06 48.0 3.4 24 24-47 9-32 (215)
418 2iyv_A Shikimate kinase, SK; t 89.1 0.19 6.5E-06 47.2 2.9 25 25-49 3-27 (184)
419 2v1u_A Cell division control p 89.1 0.85 2.9E-05 47.9 8.4 26 22-47 42-67 (387)
420 2pbr_A DTMP kinase, thymidylat 89.0 0.21 7.1E-06 47.1 3.1 21 26-46 2-22 (195)
421 1hqc_A RUVB; extended AAA-ATPa 89.0 1.3 4.6E-05 45.3 9.6 24 24-47 38-61 (324)
422 1zak_A Adenylate kinase; ATP:A 88.9 0.23 7.7E-06 48.4 3.4 26 24-49 5-30 (222)
423 2chg_A Replication factor C sm 88.9 0.63 2.2E-05 44.3 6.6 23 24-46 38-60 (226)
424 2wbm_A MTHSBDS, ribosome matur 88.9 0.79 2.7E-05 45.2 7.2 69 616-685 181-249 (252)
425 2pez_A Bifunctional 3'-phospho 88.9 0.25 8.5E-06 46.2 3.5 23 24-46 5-27 (179)
426 3jvv_A Twitching mobility prot 88.8 0.22 7.4E-06 52.6 3.3 22 24-45 123-144 (356)
427 1e6c_A Shikimate kinase; phosp 88.7 0.23 7.7E-06 46.0 3.1 25 25-49 3-27 (173)
428 1gvn_B Zeta; postsegregational 88.7 0.27 9.2E-06 50.2 3.9 27 22-48 31-57 (287)
429 2ze6_A Isopentenyl transferase 88.6 0.27 9.3E-06 49.1 3.8 25 25-49 2-26 (253)
430 3tui_C Methionine import ATP-b 88.5 0.23 8E-06 52.4 3.3 23 23-45 53-75 (366)
431 1e4v_A Adenylate kinase; trans 88.5 0.26 9E-06 47.6 3.5 24 26-49 2-25 (214)
432 2f6r_A COA synthase, bifunctio 88.4 0.29 9.9E-06 49.8 3.9 24 22-45 73-96 (281)
433 3kta_A Chromosome segregation 88.4 0.28 9.5E-06 45.9 3.5 24 26-49 28-51 (182)
434 2pt7_A CAG-ALFA; ATPase, prote 88.3 0.18 6.2E-06 52.7 2.3 22 24-45 171-192 (330)
435 2ewv_A Twitching motility prot 88.2 0.27 9.4E-06 52.2 3.7 24 23-46 135-158 (372)
436 2bbs_A Cystic fibrosis transme 88.1 0.26 9E-06 50.4 3.4 22 24-45 64-85 (290)
437 1ak2_A Adenylate kinase isoenz 88.1 0.32 1.1E-05 47.8 3.9 27 23-49 15-41 (233)
438 3nh6_A ATP-binding cassette SU 88.1 0.17 6E-06 52.1 2.0 22 24-45 80-101 (306)
439 1xp8_A RECA protein, recombina 88.1 0.95 3.2E-05 47.8 7.8 24 24-47 74-97 (366)
440 3a4m_A L-seryl-tRNA(SEC) kinas 88.1 0.28 9.6E-06 49.2 3.5 24 24-47 4-27 (260)
441 3sr0_A Adenylate kinase; phosp 88.1 0.3 1E-05 47.3 3.5 25 26-50 2-26 (206)
442 1u94_A RECA protein, recombina 88.1 0.97 3.3E-05 47.6 7.8 25 23-47 62-86 (356)
443 3fvq_A Fe(3+) IONS import ATP- 88.0 0.24 8.3E-06 52.2 3.0 23 23-45 29-51 (359)
444 1gtv_A TMK, thymidylate kinase 87.7 0.13 4.4E-06 49.6 0.7 22 26-47 2-23 (214)
445 2z0h_A DTMP kinase, thymidylat 87.7 0.26 8.9E-06 46.6 2.9 21 26-46 2-22 (197)
446 2oap_1 GSPE-2, type II secreti 87.7 0.3 1E-05 54.1 3.8 22 24-45 260-281 (511)
447 3nwj_A ATSK2; P loop, shikimat 87.6 0.3 1E-05 48.8 3.3 26 24-49 48-73 (250)
448 3syl_A Protein CBBX; photosynt 87.5 1 3.4E-05 46.0 7.4 26 22-47 65-90 (309)
449 1z47_A CYSA, putative ABC-tran 87.5 0.27 9.3E-06 51.8 3.0 22 24-45 41-62 (355)
450 2yyz_A Sugar ABC transporter, 87.3 0.28 9.6E-06 51.8 3.0 23 23-45 28-50 (359)
451 2grj_A Dephospho-COA kinase; T 87.3 0.35 1.2E-05 46.2 3.4 27 23-49 11-37 (192)
452 1lw7_A Transcriptional regulat 87.3 0.26 9E-06 52.1 2.8 23 24-46 170-192 (365)
453 1jbk_A CLPB protein; beta barr 87.2 0.4 1.4E-05 44.5 3.9 24 24-47 43-66 (195)
454 3be4_A Adenylate kinase; malar 87.2 0.34 1.2E-05 47.0 3.4 26 24-49 5-30 (217)
455 2it1_A 362AA long hypothetical 87.1 0.3 1E-05 51.6 3.1 23 23-45 28-50 (362)
456 3rlf_A Maltose/maltodextrin im 87.1 0.3 1E-05 51.9 3.1 23 23-45 28-50 (381)
457 2xb4_A Adenylate kinase; ATP-b 87.0 0.37 1.3E-05 47.0 3.6 24 26-49 2-25 (223)
458 1f2t_A RAD50 ABC-ATPase; DNA d 87.0 0.36 1.2E-05 44.0 3.3 22 26-47 25-46 (149)
459 1g29_1 MALK, maltose transport 86.9 0.3 1E-05 51.8 3.0 22 24-45 29-50 (372)
460 1v43_A Sugar-binding transport 86.8 0.31 1.1E-05 51.7 3.1 23 23-45 36-58 (372)
461 2x8a_A Nuclear valosin-contain 86.8 0.37 1.3E-05 48.8 3.6 25 25-49 45-69 (274)
462 1ixz_A ATP-dependent metallopr 86.7 0.39 1.3E-05 47.7 3.7 24 25-48 50-73 (254)
463 3pvs_A Replication-associated 86.7 2.7 9.2E-05 45.6 10.6 26 24-49 50-75 (447)
464 1q3t_A Cytidylate kinase; nucl 86.7 0.43 1.5E-05 46.9 3.9 29 21-49 13-41 (236)
465 1m7g_A Adenylylsulfate kinase; 86.6 0.41 1.4E-05 46.1 3.7 23 24-46 25-47 (211)
466 2r8r_A Sensor protein; KDPD, P 86.4 2.3 7.8E-05 41.6 8.8 22 24-45 6-27 (228)
467 2w0m_A SSO2452; RECA, SSPF, un 86.4 0.38 1.3E-05 46.7 3.3 22 24-45 23-44 (235)
468 1p9r_A General secretion pathw 86.4 0.41 1.4E-05 51.7 3.8 24 24-47 167-190 (418)
469 3cmu_A Protein RECA, recombina 86.4 1.8 6E-05 55.3 9.9 26 23-48 1426-1451(2050)
470 3bgw_A DNAB-like replicative h 86.3 1.1 3.7E-05 48.7 7.2 24 24-47 197-220 (444)
471 3r20_A Cytidylate kinase; stru 86.2 0.44 1.5E-05 47.0 3.6 26 24-49 9-34 (233)
472 2axn_A 6-phosphofructo-2-kinas 86.1 0.74 2.5E-05 51.2 5.8 24 24-47 35-58 (520)
473 1t95_A Hypothetical protein AF 86.0 1 3.5E-05 44.1 6.0 68 618-686 168-235 (240)
474 2bjv_A PSP operon transcriptio 85.9 2.2 7.7E-05 42.3 8.9 25 24-48 29-53 (265)
475 4eaq_A DTMP kinase, thymidylat 85.7 0.55 1.9E-05 46.1 4.1 27 23-49 25-51 (229)
476 1q57_A DNA primase/helicase; d 85.5 0.58 2E-05 51.8 4.6 26 23-48 241-266 (503)
477 3d31_A Sulfate/molybdate ABC t 85.5 0.27 9.3E-06 51.6 1.8 23 23-45 25-47 (348)
478 2zts_A Putative uncharacterize 85.5 2.3 7.7E-05 41.5 8.5 24 24-47 30-53 (251)
479 3ake_A Cytidylate kinase; CMP 85.4 0.5 1.7E-05 45.0 3.5 24 26-49 4-27 (208)
480 2b8t_A Thymidine kinase; deoxy 85.4 1.4 4.6E-05 43.1 6.6 42 114-155 89-130 (223)
481 1r6b_X CLPA protein; AAA+, N-t 85.4 4.1 0.00014 47.3 12.0 93 23-139 487-582 (758)
482 3fwy_A Light-independent proto 85.3 1.3 4.4E-05 45.7 6.8 87 87-180 162-253 (314)
483 1iy2_A ATP-dependent metallopr 85.3 0.52 1.8E-05 47.6 3.8 24 25-48 74-97 (278)
484 1a7j_A Phosphoribulokinase; tr 85.1 0.3 1E-05 50.0 1.8 23 24-46 5-27 (290)
485 3qf7_A RAD50; ABC-ATPase, ATPa 85.1 0.45 1.5E-05 50.4 3.3 22 26-47 25-46 (365)
486 2p65_A Hypothetical protein PF 84.9 0.47 1.6E-05 44.0 3.0 25 23-47 42-66 (187)
487 2w58_A DNAI, primosome compone 84.8 0.56 1.9E-05 44.6 3.5 23 25-47 55-77 (202)
488 1fnn_A CDC6P, cell division co 84.7 4.4 0.00015 42.4 11.0 25 24-48 44-68 (389)
489 1xwi_A SKD1 protein; VPS4B, AA 84.7 2.6 8.8E-05 43.5 8.9 25 24-48 45-69 (322)
490 1svm_A Large T antigen; AAA+ f 84.7 0.53 1.8E-05 50.0 3.6 24 23-46 168-191 (377)
491 1cr0_A DNA primase/helicase; R 84.6 0.46 1.6E-05 48.5 3.0 23 23-45 34-56 (296)
492 1in4_A RUVB, holliday junction 84.6 0.51 1.8E-05 49.2 3.4 26 24-49 51-76 (334)
493 1lv7_A FTSH; alpha/beta domain 84.6 0.56 1.9E-05 46.6 3.6 25 24-48 45-69 (257)
494 3u61_B DNA polymerase accessor 84.5 5.8 0.0002 40.5 11.5 24 24-47 47-71 (324)
495 1oxx_K GLCV, glucose, ABC tran 84.2 0.27 9.2E-06 51.8 1.0 23 23-45 30-52 (353)
496 2npi_A Protein CLP1; CLP1-PCF1 84.1 0.48 1.7E-05 51.8 3.0 24 23-46 137-160 (460)
497 3d8b_A Fidgetin-like protein 1 83.7 1.6 5.5E-05 45.8 6.9 25 24-48 117-141 (357)
498 3euj_A Chromosome partition pr 83.7 0.56 1.9E-05 51.4 3.3 21 25-45 30-50 (483)
499 1n0w_A DNA repair protein RAD5 83.7 0.6 2.1E-05 45.6 3.3 23 24-46 24-46 (243)
500 3te6_A Regulatory protein SIR3 83.4 5.2 0.00018 41.2 10.4 27 22-48 43-69 (318)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=9.8e-139 Score=1218.53 Aligned_cols=687 Identities=59% Similarity=0.973 Sum_probs=630.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-------CeeE
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRI 91 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-------~~~i 91 (711)
.|.+++|||||+||+|||||||+++|++.+|.+++.|.++.|++++|+++.|++|||||+++.+++.|+ ++.|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 455889999999999999999999999999999999999999999999999999999999999999995 6899
Q ss_pred EEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCC
Q 005154 92 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGA 171 (711)
Q Consensus 92 ~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~ 171 (711)
||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|++|.+.++|+++|+||||+..+++..+++++++.|+.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCC
Q 005154 172 KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 251 (711)
Q Consensus 172 ~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~ 251 (711)
.+.++++|++.+..|.|++|++++++++|.+...|+.+...++|..+.+....+|..++|.+++.||+++++|+++..++
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 005154 252 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 331 (711)
Q Consensus 252 ~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 331 (711)
.+++...++.....+.++|++++||+++.|+..||++|++++|+|.+.+..+....++......+.|++++|++++|||+
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~ 327 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKI 327 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEEC
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999998776665544445556678899999999999999
Q ss_pred eecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCcc
Q 005154 332 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPI 411 (711)
Q Consensus 332 ~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 411 (711)
..|++.|+++|+|||||+|++||+|++...++.+++++++.++|+++++++++.||||++|.|++++.+||||++.+.+.
T Consensus 328 ~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~ 407 (709)
T 4fn5_A 328 ATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPI 407 (709)
T ss_dssp CCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCC
T ss_pred ecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEe
Q 005154 412 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVG 491 (711)
Q Consensus 412 ~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~ 491 (711)
.++++.+++|+++++|+|.++.|.+||.++|++|+++||+|+++.+++|||++|+|+|||||||+++||+++||+++.++
T Consensus 408 ~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs 487 (709)
T 4fn5_A 408 ILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIG 487 (709)
T ss_dssp BCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCB
T ss_pred cCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEeeeccc-ceeEEEEEeecCCCcceEEEEEEEeecc------CCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 005154 492 APQVNYRESISKV-SEVKYVHKKQSGGQGQFADITVRFEPME------AGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 564 (711)
Q Consensus 492 ~p~V~yrEti~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~------~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~ 564 (711)
+|.|+|||||++. .+.+++|+|++++++||+.++++++|.+ .+.++.|.+++.++.+|++|+++|++||+||+
T Consensus 488 ~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~ 567 (709)
T 4fn5_A 488 KPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQM 567 (709)
T ss_dssp CCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHHH
T ss_pred eceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHHHH
Confidence 9999999999875 4678999999999999999999999974 35679999999999999999999999999999
Q ss_pred HcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCce
Q 005154 565 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 644 (711)
Q Consensus 565 ~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~ 644 (711)
++||||||||+||+|+|.|+++|+++|++++|+.|+++||++|+++|+|+||||||.++|+||++++|+||++|++|||+
T Consensus 568 ~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~ 647 (709)
T 4fn5_A 568 KNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGL 647 (709)
T ss_dssp HHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCE
T ss_pred hcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHH
Q 005154 645 INSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 706 (711)
Q Consensus 645 i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 706 (711)
|+++++.+ +...|+|++|++|||||+++||++|+|+|+|+|+|+||++||+++++++|+++
T Consensus 648 i~~~~~~~-~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 648 IQGMEDTV-SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp EEEEEECS-SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC
T ss_pred EeceEecC-CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHhc
Confidence 99999877 66789999999999999999999999999999999999999999999999864
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.9e-134 Score=1175.03 Aligned_cols=688 Identities=60% Similarity=0.974 Sum_probs=655.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-------eeE
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRI 91 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-------~~i 91 (711)
.+++++|||+|+||+|||||||+++|++.+|.+...+.+++|.+++|+.+.|+++|+|+.+....+.|++ +.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 3457799999999999999999999999999888888888899999999999999999999999999988 999
Q ss_pred EEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCC
Q 005154 92 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGA 171 (711)
Q Consensus 92 ~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~ 171 (711)
+|||||||.+|..++.++++.+|++|+|+|+++|++.+++.+|+++...++|+++|+||+|+..+++.++++++++.|+.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCC
Q 005154 172 KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 251 (711)
Q Consensus 172 ~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~ 251 (711)
.+.++++|++.+.+|.|++|++.+++++|++...|..+...++|.++.+...++|.+|+|.+++.||+++|+||++..++
T Consensus 165 ~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~ 244 (704)
T 2rdo_7 165 NPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELT 244 (704)
T ss_pred CceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999764457778888899998889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 005154 252 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 331 (711)
Q Consensus 252 ~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 331 (711)
.+++...+++.+..+.++|++|+||++|.|+++||++|++++|+|.+++..++.....+.....+.|++++||+++|||+
T Consensus 245 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~ 324 (704)
T 2rdo_7 245 EAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKI 324 (704)
T ss_pred HHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999988655433211111112457788999999999999
Q ss_pred eecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCcc
Q 005154 332 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPI 411 (711)
Q Consensus 332 ~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 411 (711)
+.|+++|+++|+|||||+|++||+|++.+.+++++|++|+.++|++++++++|.||||++|.|++++++||||++.+.+.
T Consensus 325 ~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~ 404 (704)
T 2rdo_7 325 ATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPI 404 (704)
T ss_pred EEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEe
Q 005154 412 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVG 491 (711)
Q Consensus 412 ~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~ 491 (711)
.+++++++.|+++++|+|.++.|.++|.++|++|+++||+|+++.|++|||++|+|||||||||+++||+++||+++.++
T Consensus 405 ~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~ 484 (704)
T 2rdo_7 405 ILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 484 (704)
T ss_pred ccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEeeecccc-eeEEEEEeecCCCcceEEEEEEEeec---cCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcC
Q 005154 492 APQVNYRESISKVS-EVKYVHKKQSGGQGQFADITVRFEPM---EAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNG 567 (711)
Q Consensus 492 ~p~V~yrEti~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~---~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~G 567 (711)
+|+|+|||||.+++ +..++|+||+||++|||+++++++|+ ++|+|+.|.+++.++.+|++|+++|++||+||+++|
T Consensus 485 ~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G 564 (704)
T 2rdo_7 485 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAG 564 (704)
T ss_pred CCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcC
Confidence 99999999999998 89999999999999999999999999 889999999999999999999999999999999999
Q ss_pred cccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeec
Q 005154 568 VLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 647 (711)
Q Consensus 568 pl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~ 647 (711)
|||||||+||+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||.++|+||++|+|+||++|++|||+|++
T Consensus 565 ~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~ 644 (704)
T 2rdo_7 565 PLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKG 644 (704)
T ss_pred CcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHH
Q 005154 648 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 707 (711)
Q Consensus 648 ~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 707 (711)
+++.+ +.+.|+|++|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++.+
T Consensus 645 ~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 645 QESEV-TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred ceecC-CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHhc
Confidence 99987 689999999999999999999999999999999999999999999999998753
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1e-132 Score=1161.44 Aligned_cols=686 Identities=55% Similarity=0.943 Sum_probs=627.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
..+.++++||+|+||+|+|||||+++|+..++.+...+.++++++++|+.+.|+++|+|+.+....+.|+++.++|||||
T Consensus 4 ~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 83 (693)
T 2xex_A 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTP 83 (693)
T ss_dssp SSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCC
T ss_pred cCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECc
Confidence 34567899999999999999999999998888888778788888999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|..++.++++.+|++|+|+|+++++..++..+|+++...++|+++|+||+|+...++.++++++++.++....+.+
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESE
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeec-CcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 256 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~ 256 (711)
+|++.+..|.+++|++.++.++|+ + .|+.+...++|..+.+.++..|+++++.+++.||+++|+|+++..++.+++.
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccC--CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 999999999999999999999997 3 3777888899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 005154 257 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 336 (711)
Q Consensus 257 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 336 (711)
..+++.+..+.++||+++||++|.|+++||++|++++|+|.+++..++...........+.|++++||+++|||+..|++
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~ 321 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPY 321 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETT
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCC
Confidence 99999999999999999999999999999999999999998764432211100123346778999999999999999999
Q ss_pred CCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccC
Q 005154 337 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM 416 (711)
Q Consensus 337 ~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~ 416 (711)
+|+++|+|||||+|++||+|++...+++++|++|+.++|+++++++++.||||++|.|++++++||||++.+.+..++++
T Consensus 322 ~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~ 401 (693)
T 2xex_A 322 VGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESM 401 (693)
T ss_dssp TEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCC
T ss_pred CceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred CCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceee
Q 005154 417 DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 496 (711)
Q Consensus 417 ~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~ 496 (711)
++++|+++++|+|.++.|.+||.++|++|+++||+|+++.|++|||++|+|||||||||+++||+++||+++.+++|+|+
T Consensus 402 ~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~ 481 (693)
T 2xex_A 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481 (693)
T ss_dssp SSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEEC
T ss_pred CCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeE
Q 005154 497 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 576 (711)
Q Consensus 497 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 576 (711)
|||||.++++..++|+||+||++|||+++++++|+++|+|+.|.+++.|+.+|++|+++|++||+||+++||||||||+|
T Consensus 482 yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~ 561 (693)
T 2xex_A 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLID 561 (693)
T ss_dssp CEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCS
T ss_pred EEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeE
Q 005154 577 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLK 656 (711)
Q Consensus 577 v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~ 656 (711)
|+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|+||++|++|||+|+++++.+ +.+
T Consensus 562 v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~ 640 (693)
T 2xex_A 562 VKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRG-NAQ 640 (693)
T ss_dssp EEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEE
T ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccC-CeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHH
Q 005154 657 VVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 706 (711)
Q Consensus 657 ~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 706 (711)
.|+|++|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++.
T Consensus 641 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 690 (693)
T 2xex_A 641 VVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKN 690 (693)
T ss_dssp EEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.6e-132 Score=1157.59 Aligned_cols=683 Identities=58% Similarity=0.963 Sum_probs=580.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
.+.++++||+|+||+|||||||+++|++.++.+...+.++++++++|+++.|+++|+|+.+....+.|+++.++||||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 34467899999999999999999999999998888888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
|.+|..++.++++.+|++|+|+|+++++..++..+|.++...++|+++|+||+|+..+++.++++++++.++..+.+.++
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
|++.+..|.|++|++.+++++|... .|..+...++|+++.+.++.+|++++|.+++.||+++|+|+++..++.+++...
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999711 366678889999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 338 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 338 (711)
+++.+..+.++||+++||++|.|+++||++|++++|+|.+++..++... ......+.|++++|++++|||+..|+++|
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G 323 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVG 323 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTE
T ss_pred HHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC--CccccccccCCCCCcEEEEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999998654332211 11234677899999999999999999999
Q ss_pred eEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCc-cccccCC
Q 005154 339 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMD 417 (711)
Q Consensus 339 ~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~-~~l~~~~ 417 (711)
+++|+|||||+|++||+|++.+.++.++|++|+.++|++++++++|.||||++|.|++++.+||||++.+.+ ..+++++
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~ 403 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 403 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC---
T ss_pred cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887 8899999
Q ss_pred CCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeE
Q 005154 418 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 497 (711)
Q Consensus 418 ~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~y 497 (711)
++.|+++++|+|.++.|.+||.++|++|+++||+|+++.|++|||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 404 ~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 483 (691)
T 1dar_A 404 VPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483 (691)
T ss_dssp -----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCC
T ss_pred CCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEE
Q 005154 498 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 577 (711)
Q Consensus 498 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 577 (711)
||||.++++..++|+||+||++|||+++++++|+++|+|+.|.++++|+.+|++|+++|++||+||+++||||||||+||
T Consensus 484 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v 563 (691)
T 1dar_A 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDI 563 (691)
T ss_dssp EEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSE
T ss_pred EEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEE
Q 005154 578 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 657 (711)
Q Consensus 578 ~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~ 657 (711)
+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|+||++|++|||+|+++++.+ +.+.
T Consensus 564 ~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~ 642 (691)
T 1dar_A 564 KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRG-NAQV 642 (691)
T ss_dssp EEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEET-TEEE
T ss_pred EEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecC-CeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHH
Q 005154 658 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 705 (711)
Q Consensus 658 i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~ 705 (711)
|+|++|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++
T Consensus 643 i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 643 IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999864
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.6e-123 Score=1078.72 Aligned_cols=656 Identities=34% Similarity=0.606 Sum_probs=629.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+.++.++|+|+||+|||||||+++|+...+.+...|.+..|.+.+|+.+.|+++|+|+......+.++++.++|||||||
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34668999999999999999999999888877777777788899999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEec
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
.+|..++.++++.+|++++|+|+.+|++.+++.+|+.+...++|+++|+||+|+. .+..+.++++++.++ ...+.++|
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~P 162 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLP 162 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEE
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEee
Confidence 9999999999999999999999999999999999999999999999999999999 888999999999999 88899999
Q ss_pred cCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHH
Q 005154 180 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 259 (711)
Q Consensus 180 ~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l 259 (711)
++.+.+|.|++|++.++.|+|++ |. +...++|+.+.+.....|++++|.+++.||+++++|++|..++.+++...+
T Consensus 163 i~~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~ 238 (665)
T 2dy1_A 163 LYEGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAF 238 (665)
T ss_dssp EEETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ecCCCcccchhhhhhhheeecCC---Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999986 43 677888999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCe
Q 005154 260 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 339 (711)
Q Consensus 260 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 339 (711)
++.+..+.++|++++||++|.|+++||++|++++|+|.+. ++++|++++|||+..++++|+
T Consensus 239 ~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~ 299 (665)
T 2dy1_A 239 HEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQ 299 (665)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEE
T ss_pred HHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------------------CCCCCeEEEEEEEEEcCCCCe
Confidence 9999999999999999999999999999999999999642 037899999999999999999
Q ss_pred EEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCc--cccccCC
Q 005154 340 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMD 417 (711)
Q Consensus 340 l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~ 417 (711)
++++|||||+|++||+|++.+ +.++|++|+.++|++.+++++|.||||++|.|++++++||||++.+.+ ..+++++
T Consensus 300 ~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 300 VAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp EEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred EEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 999999999999999999877 678999999999999999999999999999999999999999998877 7889999
Q ss_pred CCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeE
Q 005154 418 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 497 (711)
Q Consensus 418 ~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~y 497 (711)
++.|+++++|+|.++.|.++|.++|++|+++||+|++..|++|||++++|||||||||+++||+ +||+++.+++|+|+|
T Consensus 378 ~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~y 456 (665)
T 2dy1_A 378 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPY 456 (665)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCC
T ss_pred CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEE
Q 005154 498 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 577 (711)
Q Consensus 498 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 577 (711)
||||.++++..++|+||+||++|||+++++++|++ |+.|.+++.++.+|++|+++|++||+||+++|||||||++||
T Consensus 457 rEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~---g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v 533 (665)
T 2dy1_A 457 RETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS---EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGF 533 (665)
T ss_dssp EEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS---SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSE
T ss_pred EEeeccceeeeeecccccCCCcceEEEEEEEEECC---CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeE
Confidence 99999999999999999999999999999999997 799999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEE
Q 005154 578 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 657 (711)
Q Consensus 578 ~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~ 657 (711)
+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|+||++|++|||+|+++++.+ +.+.
T Consensus 534 ~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~ 612 (665)
T 2dy1_A 534 KAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSV 612 (665)
T ss_dssp EEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEE
T ss_pred EEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred EEEEechhHHhhhHHHhhhccCceEEEEEEeCccccCCchHHHHHHHHHH
Q 005154 658 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 707 (711)
Q Consensus 658 i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 707 (711)
|+|++|++|||||+++||++|+|+|+|+|+|+||+++|++++++++++.+
T Consensus 613 i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~ 662 (665)
T 2dy1_A 613 VHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERA 662 (665)
T ss_dssp EEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred EEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998864
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=2.7e-127 Score=1107.17 Aligned_cols=617 Identities=26% Similarity=0.436 Sum_probs=577.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+||||||+||+|||||||+++|++.+|.+++.|.++.|++++|+++.|++|||||+++..++.|+++.|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 182 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~ 182 (711)
..++.++++.+|+||+||||.+|+++||+.+|+++.++++|+++|+||||+.++++..+++++++.|+......+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~----- 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----- 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC-----
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred CCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 005154 183 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 262 (711)
Q Consensus 183 ~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~ 262 (711)
.+++...... ..+. +.+..+.+++.||+++++|+++..++..++...++..
T Consensus 156 ------~~~~~~~~~~-------------~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 156 ------KVELYPNVCV-------------TNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp ------CCCSCGGGCC-------------CCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred ------eeEeeccccc-------------cccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 1122111000 0111 1235678889999999999999999999999999999
Q ss_pred hhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEE
Q 005154 263 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 342 (711)
Q Consensus 263 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~ 342 (711)
+..+.++|++++||++|.|+++||++|.+++|+|... ++.|++++|||+.+|+++|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc--------------------hhhhhcceeeeeeeeccCceEEE
Confidence 9999999999999999999999999999999999762 36899999999999999999999
Q ss_pred EEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccccCCCCCCe
Q 005154 343 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 422 (711)
Q Consensus 343 ~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~pv 422 (711)
+|||||+|++||+|++...+ ++++.+++.++|.++++++++.||||++|.| ..+++|+|+++...++.+.++.+|+|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCcc
Confidence 99999999999999876644 5799999999999999999999999999988 567889999998888888899999999
Q ss_pred EEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEeeec
Q 005154 423 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESIS 502 (711)
Q Consensus 423 ~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrEti~ 502 (711)
++++|+|.++.|.+||.++|++|+++||+++++.+++|||++|+|||||||||+++||+++||+++.+++|+|+|||||.
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEE
Q 005154 503 KVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALV 582 (711)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~ 582 (711)
+++ +++|++++++++||++++++++|+++++|+.|++++.++.+|++|+++|++||+|++++| |+||||+|++|+|.
T Consensus 425 ~~~--~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~ 501 (638)
T 3j25_A 425 KNA--EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFK 501 (638)
T ss_dssp SCC--EECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCC
T ss_pred ccc--eEEEEEecCCCCceEEEEEEEecccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEE
Confidence 876 467889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEe
Q 005154 583 DGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALV 662 (711)
Q Consensus 583 ~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~ 662 (711)
|+++|+++|++++|+.|+++||++|+++|+|+||||||.++|+||++|+|+||++|++|||+|+++++.+ +.+.|+|++
T Consensus 502 dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~v 580 (638)
T 3j25_A 502 YGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN-NEVILSGEI 580 (638)
T ss_dssp CCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT-TEEEEECCC
T ss_pred ECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC-CeEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877 788999999
Q ss_pred chhHHhhhHHHhhhccCceEEEEEEeCccccCCchHH
Q 005154 663 PLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQ 699 (711)
Q Consensus 663 P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~ 699 (711)
|++|||||+++||++|+|+|+|+|+|+||++||+++.
T Consensus 581 P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 581 PARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp SSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCS
T ss_pred CHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCcc
Confidence 9999999999999999999999999999999998864
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1e-114 Score=1028.90 Aligned_cols=668 Identities=27% Similarity=0.393 Sum_probs=556.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-------------
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 87 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~------------- 87 (711)
++++|||+|+||+|||||||+++|++.+|.+...+ ..+++++|+.+.|+++|+|+.+....+.|+
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 35689999999999999999999999888776544 345688999999999999999999988886
Q ss_pred ---CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC---------
Q 005154 88 ---KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG--------- 155 (711)
Q Consensus 88 ---~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~--------- 155 (711)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+++...++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --ccHHHHHHHHHHHhC-----------CcceEEEeccCCC----------------CCceeeeecccceEE---eecCc
Q 005154 156 --ANFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGE 203 (711)
Q Consensus 156 --~~~~~~~~~l~~~l~-----------~~~~~~~~p~~~~----------------~~~~g~vd~~~~~~~---~~~~~ 203 (711)
.++.+.+++++..++ ..+.+.++|++.. .+|...++.+.++.| +|+..
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 235667777777652 3444456676543 334444455555555 66542
Q ss_pred CCCceeeeecccH-------hHHHHHHHHHHHHHHHHhccCHHHHHHHhcC--CCCCHHHHH---HHHHhhhhcCcceee
Q 005154 204 ELGAKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPV 271 (711)
Q Consensus 204 ~~g~~~~~~~~~~-------~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv 271 (711)
|..+...++|. .+.+.....|.+|+|++++.||+++|+||++ ..++.+++. +.+++.+ .+.|+|+
T Consensus 254 --~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv 330 (842)
T 1n0u_A 254 --TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA 330 (842)
T ss_dssp --TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH
T ss_pred --CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch
Confidence 44455444443 4556677889999999999999999999986 678888887 7788777 6788898
Q ss_pred eeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCCe-EEEEEE
Q 005154 272 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRV 345 (711)
Q Consensus 272 ~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~-l~~~RV 345 (711)
+++|||+|++++|+|.+++..++. ..+.+.....+.|++++|++++|||+..++++|+ ++|+||
T Consensus 331 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 331 ----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp ----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred ----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 589999999999999864322110 0111122345678999999999999999999995 999999
Q ss_pred EeeEeCCCCEEE------eCCCCc---eeecceeEEeccCceeecCeeecCCEEEEeCCCccccC-ccccCCCCcccccc
Q 005154 346 YAGTLSAGSYVL------NANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLER 415 (711)
Q Consensus 346 ~sG~l~~gd~v~------~~~~~~---~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G-dtl~~~~~~~~l~~ 415 (711)
|||+|++||+|+ |.+.++ .+||++|+.++|++++++++|.||||++|.|++++.+| +||++.+.+..+++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~ 480 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCcccccc
Confidence 999999999995 333444 68999999999999999999999999999999998553 69999888888899
Q ss_pred CCCC-CCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CeEEEEeCc
Q 005154 416 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAP 493 (711)
Q Consensus 416 ~~~~-~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~-~v~~~~~~p 493 (711)
+.++ +|+++++|+|.++.|.+||.++|++|++|||+|+++.+ +|||++|+|||||||||+++||+++| |+++.+++|
T Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P 559 (842)
T 1n0u_A 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 559 (842)
T ss_dssp CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECC
T ss_pred CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCc
Confidence 9988 69999999999999999999999999999999999998 89999999999999999999999999 999999999
Q ss_pred eeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccC----------------------------------------
Q 005154 494 QVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA---------------------------------------- 533 (711)
Q Consensus 494 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---------------------------------------- 533 (711)
+|+|||||.++++..+..+. ++.+.+++++++|+++
T Consensus 560 ~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~ 635 (842)
T 1n0u_A 560 VVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWC 635 (842)
T ss_dssp CCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEE
T ss_pred EEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceee
Confidence 99999999988866443221 2233478888888753
Q ss_pred -----CCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCC--HHHHHHHHHHHHHH
Q 005154 534 -----GSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSS--VLAFQLAARGAFRE 606 (711)
Q Consensus 534 -----~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~--~~~~~~a~~~~~~~ 606 (711)
+.+|+|++.++|+.++++|+++|++||+||+++|||||+||+||+|+|.|+++|.++++ .++|++|+++||++
T Consensus 636 ~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~ 715 (842)
T 1n0u_A 636 FGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYA 715 (842)
T ss_dssp ESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHH
T ss_pred eccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHH
Confidence 24699999999999999999999999999999999999999999999999999974444 66799999999999
Q ss_pred HHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCC-CeEEEEEEechhHHhhhHHHhhhccCceEEEE
Q 005154 607 GMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYI 685 (711)
Q Consensus 607 a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g-~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~ 685 (711)
|+++|+|+||||||.|+|+||++++|+||++|++|||+|+++++.+| +.+.|+|++|++|||||+++||++|+|+|+|+
T Consensus 716 a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~ 795 (842)
T 1n0u_A 716 GFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQ 795 (842)
T ss_dssp HHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEE
T ss_pred HHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEE
Confidence 99999999999999999999999999999999999999999998765 46999999999999999999999999999999
Q ss_pred EEeCccccCCch------HHHHHHHHHHh
Q 005154 686 MQLAKFDVVPQH------IQNQLAAKEQE 708 (711)
Q Consensus 686 ~~f~~y~~v~~~------~~~~~~~~~~~ 708 (711)
|+|+||++||++ .+++++.+.|.
T Consensus 796 ~~F~~y~~vp~~~~~~~~~a~~~~~~~R~ 824 (842)
T 1n0u_A 796 MVFDHWSTLGSDPLDPTSKAGEIVLAARK 824 (842)
T ss_dssp EEEEEEEECCSCTTCTTSHHHHHHHHHHH
T ss_pred EEeccceeCCCCccchhhHHHHHHHHHHH
Confidence 999999999998 77888877554
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.6e-90 Score=784.72 Aligned_cols=485 Identities=27% Similarity=0.401 Sum_probs=398.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCC----ccccchhhhhhcCceeeeeeEEEEecCeeEEEEe
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIID 95 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~----~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liD 95 (711)
..+++|||||+||+|||||||+++|++.+|.+.+.|.++.|+ +++|+++.|++|||||.++..++.|+++.|||||
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 345799999999999999999999999999999999988774 8999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceE
Q 005154 96 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 175 (711)
Q Consensus 96 tPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~ 175 (711)
||||.||..++.++|+.+|+||+||||.+|+++||+.+|++|.++++|+++||||||+.++++.++++++++.|+..+.|
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p 186 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAP 186 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHh-cCCCCCHHH
Q 005154 176 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL-EGNEPDEET 254 (711)
Q Consensus 176 ~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l-~~~~~~~~~ 254 (711)
+++|++.+..|.|++|++.++++.|.....+.......+.........+.. +...+..+..++.+. .+...+.
T Consensus 187 ~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~-- 260 (548)
T 3vqt_A 187 MTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYL----GDQAEQLRMDLALLEEAGTPFDE-- 260 (548)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHH----GGGHHHHHHHHHHHHHHCCCCCH--
T ss_pred EEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHH----HHHHHHhhhHHHHHhhccCchhH--
Confidence 999999999999999999999999987644433322222111111111110 000000011111111 1222222
Q ss_pred HHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeec
Q 005154 255 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 334 (711)
Q Consensus 255 ~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 334 (711)
+....+.++||+||||++|.|+++|||+|++++|+|.......+ ...+.+.||+++|||+..+
T Consensus 261 ------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~-----------~~~~~~~p~~a~vfKi~~~ 323 (548)
T 3vqt_A 261 ------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR-----------VVEPGEEAFTGVVFKIQAN 323 (548)
T ss_dssp ------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS-----------EECTTCSSCEEEEEEEECC
T ss_pred ------HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccccc-----------ccCCCCcCceEEEEEEEcc
Confidence 23456788999999999999999999999999999976432111 1123468999999999876
Q ss_pred ---CCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCcc
Q 005154 335 ---PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPI 411 (711)
Q Consensus 335 ---~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 411 (711)
+++|+++|+|||||+|++||+|++.+.++++|+++++.++|.+++++++|.||||++|.|++++.+||||++.+.+.
T Consensus 324 ~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~ 403 (548)
T 3vqt_A 324 MDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVL 403 (548)
T ss_dssp -------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCC
T ss_pred CCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEE--
Q 005154 412 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN-- 489 (711)
Q Consensus 412 ~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~-- 489 (711)
.+++++++.|+++++|+|.++.|.++|.++|++|+++|| +.+..+++|||++|+|||||||||+++||+++||+++.
T Consensus 404 ~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e 482 (548)
T 3vqt_A 404 KFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYE 482 (548)
T ss_dssp CBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEe
Confidence 899999999999999999999999999999999999998 56667899999999999999999999999999999976
Q ss_pred ---EeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEE
Q 005154 490 ---VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 528 (711)
Q Consensus 490 ---~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (711)
++.|+|+|||||++.++++++|++|+++++||+.++|.-
T Consensus 483 ~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~ 524 (548)
T 3vqt_A 483 GVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAP 524 (548)
T ss_dssp ECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEES
T ss_pred eccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEec
Confidence 578999999999999999999999999999999998743
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=9.6e-81 Score=705.75 Aligned_cols=464 Identities=27% Similarity=0.460 Sum_probs=390.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-----eeEEEEe
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----HRINIID 95 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-----~~i~liD 95 (711)
.+++|||+|+||+|||||||+++|++.+|.+.... .+++++|+++.|++||+|+.+....+.|+. +.++|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 45699999999999999999999998888765432 246889999999999999999999998863 8999999
Q ss_pred CCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceE
Q 005154 96 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 175 (711)
Q Consensus 96 tPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~ 175 (711)
||||.||..++.++++.+|++|+|+|+++|++.|+..+|..+...++|+++|+||+|+..++..+..+++.+.++..
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--- 156 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--- 156 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC---
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999887666666666544321
Q ss_pred EEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHH
Q 005154 176 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 255 (711)
Q Consensus 176 ~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~ 255 (711)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 005154 256 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 335 (711)
Q Consensus 256 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 335 (711)
..+++++||++|.|+++|+++|.+++|+|.. ++++|+.++||++..++
T Consensus 157 ------------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~ 204 (600)
T 2ywe_A 157 ------------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDP 204 (600)
T ss_dssp ------------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEET
T ss_pred ------------cccEEEEEeecCCCchHHHHHHHHhcccccc--------------------cccCCcceeEEEEeecc
Confidence 0137889999999999999999999999864 24789999999999999
Q ss_pred CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe-C---CCccccCccccCCCCc-
Q 005154 336 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 410 (711)
Q Consensus 336 ~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~- 410 (711)
+.|.++++||++|+|++||.|++.+.++..+|++++.+.+ ...+++++.||||+++. | ++++++||||++.+++
T Consensus 205 ~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~ 283 (600)
T 2ywe_A 205 YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283 (600)
T ss_dssp TTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCC
T ss_pred cceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCcc
Confidence 9999999999999999999999999999999999999886 47899999999999884 4 5578999999998776
Q ss_pred -cccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhc
Q 005154 411 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 484 (711)
Q Consensus 411 -~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g-----~Gelhlei~~~~L~~~~ 484 (711)
.+++++++++|+++++++|.++.|.++|.++|++|.++||+|+++ ++|++.++.| ||||||||+++||+++|
T Consensus 284 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~ 361 (600)
T 2ywe_A 284 KEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREY 361 (600)
T ss_dssp SSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhc
Confidence 468889999999999999999999999999999999999999998 4688766666 99999999999999999
Q ss_pred CeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 005154 485 KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 564 (711)
Q Consensus 485 ~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~ 564 (711)
|+++.+++|+|+||||+.+. |. ++.+ .+
T Consensus 362 ~~~v~~~~P~V~yreti~~~--------------g~----~~~~-----------~~----------------------- 389 (600)
T 2ywe_A 362 GVKIITTAPNVIYRVKKKFT--------------DE----VIEV-----------RN----------------------- 389 (600)
T ss_dssp CCCEEECCCEECEEEEETTC--------------SS----CEEE-----------SS-----------------------
T ss_pred CceEEEEeeeEEEEEEecCC--------------Cc----EEEE-----------eC-----------------------
Confidence 99999999999999998741 11 1111 10
Q ss_pred HcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCce
Q 005154 565 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 644 (711)
Q Consensus 565 ~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~ 644 (711)
| +++|+.| +. -+.|+||||+++|.+|++|+|+||++|++|||+
T Consensus 390 ---p-~~~p~~~----------~~-----------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~ 432 (600)
T 2ywe_A 390 ---P-MDFPDNA----------GL-----------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGI 432 (600)
T ss_dssp ---G-GGSCSCG----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred ---h-hhCCCCC----------cc-----------------------cccccCCeEEEEEEecHHHHHHHHHHHHHcCcE
Confidence 2 5677765 10 137999999999999999999999999999999
Q ss_pred eeccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccC
Q 005154 645 INSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 645 i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
+.++++.++++..|+|.+|++|+ +||.++|||+|+|+|+|+++|+||+++
T Consensus 433 ~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 433 QKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp EEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred EeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 99999976578999999999999 899999999999999999999999999
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=9.3e-79 Score=691.23 Aligned_cols=460 Identities=28% Similarity=0.421 Sum_probs=382.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----CeeEEEEeC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDT 96 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-----~~~i~liDt 96 (711)
+++|||+|+||+|||||||+++|++.+|.+.... .+.+++|+++.|++||+|+.+....+.|+ ++.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE---MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc---ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 4699999999999999999999999888765431 24688999999999999999999999886 389999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEE
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 176 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~ 176 (711)
|||.||..++.++++.+|++|+|+|+++|++.|+..+|..+...++|+++|+||+|+..++..+..+++.+.++...
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999998876666666665544310
Q ss_pred EeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHH
Q 005154 177 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 256 (711)
Q Consensus 177 ~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~ 256 (711)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 005154 257 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 336 (711)
Q Consensus 257 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 336 (711)
.+++++||++|.|+++|+++|.+++|+|.. ++++|+.++|+++..+++
T Consensus 156 ------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~ 203 (599)
T 3cb4_D 156 ------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNY 203 (599)
T ss_dssp ------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETT
T ss_pred ------------ceEEEeecccCCCchhHHHHHhhcCCCccc--------------------cccCCceeeeeecccccc
Confidence 137889999999999999999999999964 247899999999999999
Q ss_pred CCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe-CC---CccccCccccCCCCc--
Q 005154 337 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-GL---KDTITGETLCDADHP-- 410 (711)
Q Consensus 337 ~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~-gl---~~~~~Gdtl~~~~~~-- 410 (711)
.|.++++||++|+|++||++.+.++++..+|.+++.+.+. .++++++.||||+++. |+ +++.+||||++.+++
T Consensus 204 ~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~ 282 (599)
T 3cb4_D 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAE 282 (599)
T ss_dssp TEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCS
T ss_pred ccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccc
Confidence 9999999999999999999999999988999999998865 7899999999999884 54 468999999998776
Q ss_pred cccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhcC
Q 005154 411 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 485 (711)
Q Consensus 411 ~~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g-----~Gelhlei~~~~L~~~~~ 485 (711)
..++++..++|+++++++|.+..|.++|.++|++|+++||+|++. ++|++.++.| ||+|||||+++||+++||
T Consensus 283 ~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 283 KALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp SCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred cccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 668888999999999999999999999999999999999999998 4688866666 999999999999999999
Q ss_pred eEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHH
Q 005154 486 VEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMS 565 (711)
Q Consensus 486 v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~ 565 (711)
+++.+++|.|+||||+.+.. ++.|.+ |
T Consensus 361 ~~~~~~~P~V~yreti~~g~------------------------------~~~~~~-------p---------------- 387 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTSRE------------------------------VIYVDS-------P---------------- 387 (599)
T ss_dssp CCEEECCCEECEEEEESSSC------------------------------EEEESS-------G----------------
T ss_pred ceEEEEeeeEEEEEEecCCc------------------------------eEEecC-------h----------------
Confidence 99999999999999987421 122222 1
Q ss_pred cCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCcee
Q 005154 566 NGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQI 645 (711)
Q Consensus 566 ~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i 645 (711)
.++|.. ++ -+.|+||||+++|.+|++|+|+||++|++|||++
T Consensus 388 ----~~~p~~-----------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~ 429 (599)
T 3cb4_D 388 ----SKLPAV-----------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQ 429 (599)
T ss_dssp ----GGSCCG-----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred ----hhCCCc-----------cc-----------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEE
Confidence 122211 00 1379999999999999999999999999999999
Q ss_pred eccccCCCCeEEEEEEechhHH-hhhHHHhhhccCceEEEEEEeCccccC
Q 005154 646 NSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 694 (711)
Q Consensus 646 ~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v 694 (711)
.++++.+ ++..|+|.+|++|+ +||.++|||+|+|+|+|+|+|+||+++
T Consensus 430 ~~~~~~~-~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 430 TNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEECCT-TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred eCcEecC-CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 9999987 58999999999999 799999999999999999999999998
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7.7e-74 Score=644.83 Aligned_cols=458 Identities=26% Similarity=0.404 Sum_probs=394.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecC----CCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~----g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
+++|||+|+||+|+|||||+++|++.+|.+...|.+.. +.+..|+.+.|+++|+|+.+....+.|+++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 46899999999999999999999999999888777654 45788999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|..++.++++.+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..++..+.++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 257 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~ 257 (711)
+|++.+..|.|++|++.++++.|.... |......+++.++.+. .+++.+.+. +++|+++..+..++...
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGK-HERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTS-SSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred cccccCCceeEEEEeecCEEEEecCCC-CCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 999999999999999999999998643 2222222333322111 222222222 44454432111111111
Q ss_pred HHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee--cC
Q 005154 258 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP 335 (711)
Q Consensus 258 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~~ 335 (711)
..++.+..+.++|||++||++|.|+++||++|.+++|+|........ ...+ .++|++++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~----------~~~~-~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR----------LVKP-EEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS----------CBCT-TSSSCEEEEEEEEECCC-
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce----------eeCC-CcccceeEEEEEecccCc
Confidence 22566778899999999999999999999999999999987432111 1111 36899999999985 88
Q ss_pred -CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCccccc
Q 005154 336 -FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 414 (711)
Q Consensus 336 -~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~ 414 (711)
++|+++|+|||||+|++||.|++.+.++.++|++++.++|.+++++++|.||||+++.|++++++||||++ +.+..++
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~-~~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEES-SCCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcC-CCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4556778
Q ss_pred cCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCce
Q 005154 415 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ 494 (711)
Q Consensus 415 ~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~ 494 (711)
++..+.|+++++|+|.++.|.++|.++|++|++|||+ ++..+++|||++|+|||||||||+.+||+++||+++.+++|.
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 8888899999999999999999999999999999986 888899999999999999999999999999999999999999
Q ss_pred eeEEeeecc
Q 005154 495 VNYRESISK 503 (711)
Q Consensus 495 V~yrEti~~ 503 (711)
|+|+++|..
T Consensus 467 v~~~~~i~~ 475 (528)
T 3tr5_A 467 VVTARWVIC 475 (528)
T ss_dssp CCEEEEEEC
T ss_pred eEEEEEecC
Confidence 999999975
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.2e-73 Score=644.05 Aligned_cols=459 Identities=26% Similarity=0.414 Sum_probs=368.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCC----CccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g----~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
++++||+|+||+|||||||+++|+...+.+...+.+..+ .+.+|+++.|+++|+|+.+....+.++++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 358999999999999999999999888877666665443 5788999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEE
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~ 177 (711)
||.+|..++.++++.+|++|+|+|+++++..|++.+++.+...++|+++|+||+|+...+..+.++++++.|+....+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred eccCCCCCceeeeecccceEEeecCcCCCceeee-ecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHH
Q 005154 178 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 256 (711)
Q Consensus 178 ~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~ 256 (711)
+|++....|.|++|++...++.|.... |..+.. .++|. +.+. .+.+. .+++++++|+++..+..+++.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~-g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGK-GHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTC-CSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred cceecccCcceeeehhhhhHhhhcccC-CCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999996522 321111 22221 0000 11222 267788888776433333333
Q ss_pred HHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee---
Q 005154 257 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--- 333 (711)
Q Consensus 257 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--- 333 (711)
..+++.+..+.++|||+|||++|.|+++||++|.+++|+|..+... ...+.++ ++||+++|||+..
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~~-~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD----------TRTVEAS-EDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS----------SCEECTT-CCSCEEEEEEECSSCC
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc----------ccccCCC-CCCeEEEEEEEeeccC
Confidence 3445667788999999999999999999999999999999864220 0112222 6899999999976
Q ss_pred cCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCccccCccccCCCCcccc
Q 005154 334 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 413 (711)
Q Consensus 334 ~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l 413 (711)
++++|+++|+||+||+|++||+|++.+.++.++|++++.++|.+++++++|.||||++|.|++++++||||++.+ +..+
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~ 387 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKF 387 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCB
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999876 5678
Q ss_pred ccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCeEEEEeCc
Q 005154 414 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAP 493 (711)
Q Consensus 414 ~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~~~~~tge~il~g~Gelhlei~~~~L~~~~~v~~~~~~p 493 (711)
+++.++.|+++++|+|.++.|.++|.++|++|++||| +++..+++|||++|+|||||||||+++||+++||+++.+++|
T Consensus 388 ~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 388 TGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp CCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 8888999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred eeeEEeeeccc
Q 005154 494 QVNYRESISKV 504 (711)
Q Consensus 494 ~V~yrEti~~~ 504 (711)
.|+|||||...
T Consensus 467 ~v~y~eti~~~ 477 (529)
T 2h5e_A 467 NVATARWVECA 477 (529)
T ss_dssp CCSEEEEEECS
T ss_pred ceeEEEEEcCC
Confidence 99999999644
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.4e-42 Score=355.55 Aligned_cols=198 Identities=20% Similarity=0.397 Sum_probs=162.3
Q ss_pred EEeCCCccccCccccCCCCccccccCCCCCCeEEEEEEeCCC----cC-----HHHHHHHHHHHHhcCCceEEEEcCCCC
Q 005154 391 ALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTK----AD-----IDKMANGLIKLAQEDPSFHFSRDEEIN 461 (711)
Q Consensus 391 ~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~pv~~~~iep~~~----~d-----~~~L~~~L~~l~~~Dpsl~v~~~~~tg 461 (711)
++.|++++.+|||||+.+++..++++++++|+++++|+|+++ .| ..+|.++|.+|+++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 567899999999999998888899999999999999999987 65 689999999999999999999999999
Q ss_pred eEEEEecChhhHHHHHHHHHhhcCeEEEEeCceeeEEeeecccceeEEEEEeecCCCcceEEEEEEEeeccCCCCcEEEe
Q 005154 462 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKS 541 (711)
Q Consensus 462 e~il~g~Gelhlei~~~~L~~~~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 541 (711)
+++++|||||||||+++||+++ |+++.+++|+|+|||| +
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~-------------------------------------- 120 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D-------------------------------------- 120 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T--------------------------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C--------------------------------------
Confidence 9999999999999999999999 9999999999999997 0
Q ss_pred cccCCcCccccHHHHHHHHHHHHHcCcccCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeE
Q 005154 542 EIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMK 621 (711)
Q Consensus 542 ~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~ 621 (711)
| +||||||+
T Consensus 121 -------------------------G----------------------------------------------~llEPi~~ 129 (332)
T 3e3x_A 121 -------------------------G----------------------------------------------QLMEPFET 129 (332)
T ss_dssp -------------------------T----------------------------------------------EEEEEEEE
T ss_pred -------------------------C----------------------------------------------EEECcEEE
Confidence 0 69999999
Q ss_pred EEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEEEeCccccC-CchHHH
Q 005154 622 VEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV-PQHIQN 700 (711)
Q Consensus 622 ~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v-~~~~~~ 700 (711)
++|.||++|+|.|+++|++|||++.++++.+++++.|+|.+|++++|||.++||++|+|+|+|+++|+||+++ |+++++
T Consensus 130 v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~ 209 (332)
T 3e3x_A 130 VTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQ 209 (332)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSC
T ss_pred EEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccc
Confidence 9999999999999999999999999999986578999999999999999999999999999999999999999 887654
No 14
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.8e-37 Score=351.44 Aligned_cols=332 Identities=22% Similarity=0.268 Sum_probs=249.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe----------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 86 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~---------------- 86 (711)
+.++|+|+||+|||||||+++|+......... +|+|.......+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~------------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA------------------GGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC------------------CceecccCeEEEeechhhhhcccccccccc
Confidence 45799999999999999999998543211111 23333322222221
Q ss_pred --cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHH
Q 005154 87 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 164 (711)
Q Consensus 87 --~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~ 164 (711)
....++|||||||.+|...+.++++.+|++|+|+|+++|+++||.+.|..+...++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 22369999999999999999999999999999999999999999999999999999999999999996421000
Q ss_pred HHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 005154 165 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 244 (711)
Q Consensus 165 l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~ 244 (711)
.+ .++++.+.......++.+.+.+.+.++++++.+
T Consensus 142 ----------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g 176 (594)
T 1g7s_A 142 ----------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG 176 (594)
T ss_dssp ----------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 011111111123345556666677777777777
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCe
Q 005154 245 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 324 (711)
Q Consensus 245 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 324 (711)
++.+... .+ ......+|++++||++|.|+++|+++|..++|+|... ...+++++|+
T Consensus 177 l~~e~~~------~l---~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---------------~l~~~~~~p~ 232 (594)
T 1g7s_A 177 FESERFD------RV---TDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---------------QLKIEEDSPA 232 (594)
T ss_dssp CEEEEGG------GC---SCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---------------GGEECTTSBC
T ss_pred cchHHHH------HH---HhccCcceEEEEeccCCCCchhHHHHHHhhccccchh---------------hhccccCCCc
Confidence 6532110 00 0124567999999999999999999999998866431 1234568999
Q ss_pred EEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCce--eecceeEEec--------cCceeecCeee--cCCEEEE
Q 005154 325 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK--ERIGRLLEMH--------ANSREDVKVAL--AGDIIAL 392 (711)
Q Consensus 325 ~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~--~~v~~i~~~~--------g~~~~~v~~a~--aGdIv~i 392 (711)
.++|+++..+++.|.++++||++|+|++||.|++.+.+.. .+|++|+.+. +....++++|. +|+++++
T Consensus 233 ~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~ 312 (594)
T 1g7s_A 233 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA 312 (594)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC
T ss_pred eeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE
Confidence 9999999999999999999999999999999998877764 4999999873 56778999998 9999999
Q ss_pred eCCCccccCccccCCCCcc--------ccccCCCCCCeEEEEEEeCCCcCHHHHHHHHHHH
Q 005154 393 AGLKDTITGETLCDADHPI--------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 445 (711)
Q Consensus 393 ~gl~~~~~Gdtl~~~~~~~--------~l~~~~~~~pv~~~~iep~~~~d~~~L~~~L~~l 445 (711)
.||+++.+||||+...++. .+..+.+..+.+.+.|.+......+.|.++|+++
T Consensus 313 ~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 313 PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999999999998875441 1334455577888999999999999999999987
No 15
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.4e-35 Score=324.17 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=219.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeee-------------ecCCCccccchhhhhhcCceeeeeeEEEE
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-------------VHEGTATMDWMEQEQERGITITSAATTTY 85 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~-------------~~~g~~~~d~~~~e~~~giti~~~~~~~~ 85 (711)
.+.+...||+++||+|+|||||+++|++.++.+....- -..-.+.+|..+.|+++|+|++.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34456799999999999999999999988886644220 00113578999999999999999999999
Q ss_pred ecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-------hhHHHHHHHHHhcCCC-eEEEEeccCcCCcc
Q 005154 86 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGAN 157 (711)
Q Consensus 86 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-------~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~ 157 (711)
++++.++|||||||.+|...+..+++.+|++|+|||+++|.. .|+++++..+...++| +++|+||+|+...+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 999999999999999999999999999999999999999976 7999999999999999 78999999996543
Q ss_pred HH-HHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhcc
Q 005154 158 FF-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 236 (711)
Q Consensus 158 ~~-~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~ 236 (711)
.. ...+++.+
T Consensus 172 ~~~~~~~~i~~--------------------------------------------------------------------- 182 (439)
T 3j2k_7 172 WSNERYEECKE--------------------------------------------------------------------- 182 (439)
T ss_pred hHHHHHHHHHH---------------------------------------------------------------------
Confidence 21 11111110
Q ss_pred CHHHHHHHhcCCCCCHHHHHHHHHhhhhc-CcceeeeeccccCCCChHHHHH-----------HHHHhCCCCCCCCCCCC
Q 005154 237 DDEAMESYLEGNEPDEETIKKLIRKGTIA-GSFVPVLCGSAFKNKGVQPLLD-----------AVVDYLPSPLDLPAMKG 304 (711)
Q Consensus 237 ~d~l~e~~l~~~~~~~~~~~~~l~~~~~~-~~~~Pv~~~Sa~~~~Gi~~Ll~-----------~i~~~lP~p~~~~~~~~ 304 (711)
++...+...... ...+|++++||++|.|+.++++ .+.+.+|.|..
T Consensus 183 -----------------~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~------ 239 (439)
T 3j2k_7 183 -----------------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNR------ 239 (439)
T ss_pred -----------------HHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCcc------
Confidence 111111111110 1236899999999999998433 23344666543
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCee
Q 005154 305 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 384 (711)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a 384 (711)
+.++|+.+.|..++. +.|+++.|||.+|+|++||.|.+.+.+.+.+|++|... ..++++|
T Consensus 240 --------------~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~----~~~~~~a 299 (439)
T 3j2k_7 240 --------------SVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD----DTETDFV 299 (439)
T ss_pred --------------CCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC----CeEcCEe
Confidence 247899999998875 56999999999999999999999998989999998763 3689999
Q ss_pred ecCCEEE--EeCCC--ccccCccccCCCCc
Q 005154 385 LAGDIIA--LAGLK--DTITGETLCDADHP 410 (711)
Q Consensus 385 ~aGdIv~--i~gl~--~~~~Gdtl~~~~~~ 410 (711)
.|||+|+ |.|++ ++++||++++++++
T Consensus 300 ~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 300 APGENLKIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred cCCCcceEEEeccchhhcCCcEEecCCCCC
Confidence 9999999 47766 47899999987654
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.7e-35 Score=323.48 Aligned_cols=272 Identities=26% Similarity=0.402 Sum_probs=216.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee--eecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~--~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
...++|+++||+|+|||||+++|+..... .+ ........+|..+.|+++|+|+......+.+++..++|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAA---ENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHH---SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhh---cCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 34689999999999999999999853110 11 00111235788999999999999988888888999999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
.+|...+.++++.+|++|+|+|++++...|+++++..+...++| +++|+||+|+.... +.++.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~------------ 151 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVE------------ 151 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHH------------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHH------------
Confidence 99999999999999999999999999999999999999999999 78999999997421 1111111
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
+++.+.
T Consensus 152 --------------------------------------------------------------------------~~~~~~ 157 (405)
T 2c78_A 152 --------------------------------------------------------------------------MEVRDL 157 (405)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhhhcCcceeeeeccccCCCC------------------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCC
Q 005154 259 IRKGTIAGSFVPVLCGSAFKNKG------------------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 320 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~~G------------------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
+.........+|++++||++|.| +.+|+++|.+++|.|.. +.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~--------------------~~ 217 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR--------------------DV 217 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC--------------------CC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC--------------------CC
Confidence 11111111235889999999987 88999999999998854 13
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC---ceeecceeEEeccCceeecCeeecCCEEEEe--CC
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALA--GL 395 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--gl 395 (711)
++|+.+.|.+++.++++|++++|||++|+|++||+|.+.+.+ ...+|++|.... .++++|.|||++++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT----EEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECC----cccCEEcCCCEEEEEECCC
Confidence 689999999999999999999999999999999999987766 578899986542 689999999999885 55
Q ss_pred --CccccCccccCCC
Q 005154 396 --KDTITGETLCDAD 408 (711)
Q Consensus 396 --~~~~~Gdtl~~~~ 408 (711)
+++.+||+|++++
T Consensus 294 ~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 294 SREEVERGQVLAKPG 308 (405)
T ss_dssp CTTTCCTTCEEESTT
T ss_pred cHhhcCceEEEEcCC
Confidence 5689999999875
No 17
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2.6e-35 Score=322.51 Aligned_cols=270 Identities=26% Similarity=0.348 Sum_probs=214.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeee-ecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~-~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
..||+++||+|+|||||+++|+..... .+. .....+.+|..+.|+++|+|+......+.++++.++|||||||.+|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH
Confidence 579999999999999999999853211 010 1111234788889999999999988888888899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 181 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~ 181 (711)
...+.++++.+|++|+|+|+++|...|+++++..+...++| +++|+||+|+.... +.++.+.
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~--------------- 142 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVE--------------- 142 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHH---------------
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHH---------------
Confidence 99999999999999999999999999999999999999999 57899999997421 1111110
Q ss_pred CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 005154 182 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 261 (711)
Q Consensus 182 ~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~ 261 (711)
+++.+.+..
T Consensus 143 -----------------------------------------------------------------------~~~~~~l~~ 151 (397)
T 1d2e_A 143 -----------------------------------------------------------------------LEIRELLTE 151 (397)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 011111111
Q ss_pred hhhcCcceeeeeccccCCC---------C-hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 005154 262 GTIAGSFVPVLCGSAFKNK---------G-VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 331 (711)
Q Consensus 262 ~~~~~~~~Pv~~~Sa~~~~---------G-i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 331 (711)
.......+|++++||++|. | +.+|+++|.+++|.|.. +.++|+.+.|.++
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~--------------------~~~~p~~~~v~~v 211 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR--------------------DLEKPFLLPVESV 211 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC--------------------CTTSCCEEECCEE
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC--------------------CCCCcEEEEEEEE
Confidence 1111223689999999976 3 89999999999998864 1368999999999
Q ss_pred eecCCCCeEEEEEEEeeEeCCCCEEEeCCCC--ceeecceeEEeccCceeecCeeecCCEEEEe--CC--CccccCcccc
Q 005154 332 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLC 405 (711)
Q Consensus 332 ~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~Gdtl~ 405 (711)
+.++++|++++|||++|+|++||+|.+.+.+ ...+|++|.... .++++|.|||++++. |+ +++++||+|+
T Consensus 212 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 212 YSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp EEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEe
Confidence 9999999999999999999999999876654 678899986543 679999999999885 66 4589999999
Q ss_pred CCC
Q 005154 406 DAD 408 (711)
Q Consensus 406 ~~~ 408 (711)
+++
T Consensus 288 ~~~ 290 (397)
T 1d2e_A 288 KPG 290 (397)
T ss_dssp STT
T ss_pred CCC
Confidence 865
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1e-34 Score=321.47 Aligned_cols=274 Identities=26% Similarity=0.312 Sum_probs=207.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceee--e-----ecCC------CccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E-----VHEG------TATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~--~-----~~~g------~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
++.++|+++||+|+|||||+++|++.++.+.... . ...| ++.+|..+.|+++|+|+......+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 3578999999999999999999998766554221 0 0111 1467999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCC-eEEEEeccCcCCccH--
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-- 158 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~-- 158 (711)
+.++|||||||.+|..++.++++.+|++|+|+|+++| +..|+++++..+...++| +++|+||+|+...++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 888999999999999985 789999999976421
Q ss_pred ---HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 159 ---FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 159 ---~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
..+.++++
T Consensus 164 ~~~~~~~~~i~--------------------------------------------------------------------- 174 (435)
T 1jny_A 164 KRYKEIVDQVS--------------------------------------------------------------------- 174 (435)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 11112221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 303 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 303 (711)
..+.........+|++.+||++|.|+. .|++++.. +|.|...
T Consensus 175 ---------------------~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~---- 228 (435)
T 1jny_A 175 ---------------------KFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP---- 228 (435)
T ss_dssp ---------------------HHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG----
T ss_pred ---------------------HHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC----
Confidence 111111111113688999999999986 68888655 4555431
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCe
Q 005154 304 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 383 (711)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 383 (711)
.++|+.+.|..++..++.|++++|||++|+|++||.|++.+.+...+|++|... ..++++
T Consensus 229 ----------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~ 288 (435)
T 1jny_A 229 ----------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDK 288 (435)
T ss_dssp ----------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESE
T ss_pred ----------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeE
Confidence 256788888888888899999999999999999999999988889999999653 378999
Q ss_pred eecCCEEEE--eCC--CccccCccccCCCCc
Q 005154 384 ALAGDIIAL--AGL--KDTITGETLCDADHP 410 (711)
Q Consensus 384 a~aGdIv~i--~gl--~~~~~Gdtl~~~~~~ 410 (711)
|.|||++++ .|+ +++++||+|++++++
T Consensus 289 a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 289 AEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp ECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 999999998 354 468999999987544
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-34 Score=328.87 Aligned_cols=275 Identities=22% Similarity=0.275 Sum_probs=184.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCccee-------eeecCC------CccccchhhhhhcCceeeeeeEEEEec
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------GEVHEG------TATMDWMEQEQERGITITSAATTTYWN 87 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~-------~~~~~g------~~~~d~~~~e~~~giti~~~~~~~~~~ 87 (711)
.+..+||+++||+|+|||||+++|++.++.+... .....| .+.+|..+.|+++|+|+......+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999999877655432 011111 468899999999999999999999999
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-------ChhHHHHHHHHHhcCCC-eEEEEeccCcCCcc--
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGAN-- 157 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-------~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~-- 157 (711)
++.++|||||||.+|...+..+++.+|++|+|||+++|. ..|+++++..+...++| +|+|+||+|+...+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 999999999999999999999999999999999999854 89999999999999998 78899999997643
Q ss_pred -HHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhcc
Q 005154 158 -FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 236 (711)
Q Consensus 158 -~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~ 236 (711)
+..+.+++.+.+.
T Consensus 334 ~~~~i~~el~~~l~------------------------------------------------------------------ 347 (592)
T 3mca_A 334 RFQEIKNIVSDFLI------------------------------------------------------------------ 347 (592)
T ss_dssp HHHHHHHHHHHHHT------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 2222223322220
Q ss_pred CHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH--------------HHHHHHHHhCCCCCCCCCC
Q 005154 237 DDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ--------------PLLDAVVDYLPSPLDLPAM 302 (711)
Q Consensus 237 ~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~--------------~Ll~~i~~~lP~p~~~~~~ 302 (711)
.........+|++++||++|.|+. .|++.|..++|.+ .
T Consensus 348 -----------------------~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~-~---- 399 (592)
T 3mca_A 348 -----------------------KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE-K---- 399 (592)
T ss_dssp -----------------------TTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS-C----
T ss_pred -----------------------HhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccc-c----
Confidence 000111123689999999999997 7999999888732 2
Q ss_pred CCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecC
Q 005154 303 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 382 (711)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 382 (711)
+.++|+.+.|..++.. +.|++++|||.+|+|++||.|.+.+.+...+|++|... ..+++
T Consensus 400 ----------------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~~ 458 (592)
T 3mca_A 400 ----------------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPSS 458 (592)
T ss_dssp ----------------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCSC
T ss_pred ----------------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccCc
Confidence 1478999999999998 88999999999999999999999998888999999853 36799
Q ss_pred -eeecCCEEEE--eCCC--ccccCccccCCCCc
Q 005154 383 -VALAGDIIAL--AGLK--DTITGETLCDADHP 410 (711)
Q Consensus 383 -~a~aGdIv~i--~gl~--~~~~Gdtl~~~~~~ 410 (711)
+|.|||+|++ .|++ +++.||+|++++.+
T Consensus 459 ~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 459 TWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp CEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred ceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9999999996 5765 48899999987654
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=2e-32 Score=307.15 Aligned_cols=280 Identities=20% Similarity=0.256 Sum_probs=204.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCccee------------ee-ecCCCccccchhhhhhcCceeeeeeEEEEecCe
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNKH 89 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~------------~~-~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~ 89 (711)
...+|+++|++|+|||||+++|++..+.+... |. .....+.+|....|+++|+|+......+.+.++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 46899999999999999999999887655431 10 011246789999999999999999999999999
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHH
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRT 161 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~ 161 (711)
.++|||||||.+|...+..+++.+|++|+|+|+++| +..|+++++..+...+++ +++|+||+|+...+. ..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~-~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-QR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH-HH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH-HH
Confidence 999999999999999999999999999999999988 678999999999988865 888999999976431 11
Q ss_pred HHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHH
Q 005154 162 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 241 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~ 241 (711)
.+++.+
T Consensus 191 ~~~i~~-------------------------------------------------------------------------- 196 (483)
T 3p26_A 191 FEEIKS-------------------------------------------------------------------------- 196 (483)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111110
Q ss_pred HHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------------HHHHHHHhCCC--CCCCCC
Q 005154 242 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------------LLDAVVDYLPS--PLDLPA 301 (711)
Q Consensus 242 e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------------Ll~~i~~~lP~--p~~~~~ 301 (711)
++...+.........+|++.+||++|.|+.+ +|+.+...+|. |..
T Consensus 197 ------------~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~--- 261 (483)
T 3p26_A 197 ------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI--- 261 (483)
T ss_dssp ------------HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC---
T ss_pred ------------HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc---
Confidence 1111111111122246899999999999863 44555444554 322
Q ss_pred CCCCCCCCcccccccccCCCCCeEEEEEEEeecC---CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEec----
Q 005154 302 MKGTDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH---- 374 (711)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~---- 374 (711)
+.+.|+.+.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+.+.+|++|....
T Consensus 262 -----------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~ 324 (483)
T 3p26_A 262 -----------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQ 324 (483)
T ss_dssp -----------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC--
T ss_pred -----------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCcccc
Confidence 14789999999998876 479999999999999999999999989899999998763
Q ss_pred cCceeecCeeecCCEEEE--eC--CCccccCccccCCCC
Q 005154 375 ANSREDVKVALAGDIIAL--AG--LKDTITGETLCDADH 409 (711)
Q Consensus 375 g~~~~~v~~a~aGdIv~i--~g--l~~~~~Gdtl~~~~~ 409 (711)
|....++++|.|||+|++ .+ .++++.||+|+++++
T Consensus 325 ~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 325 STNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ---CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred ccccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 344578999999999999 33 356899999998765
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=3.7e-33 Score=328.17 Aligned_cols=274 Identities=23% Similarity=0.334 Sum_probs=203.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeee-ecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~-~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
.....+|+++||+|+|||||+++|+..... .+. .....+.+|..+.|+++|+|+......+.+++..++|||||||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~---~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAK---TYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH 369 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHH---HSCC---------------------CCSCEEEECSSCEEEEEECCCH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhcc---ccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh
Confidence 345789999999999999999999853210 010 0011235788899999999999998888888999999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEe
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 178 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 178 (711)
.+|...+.++++.+|++|+|||+++|...|+++++..+...++| +|+|+||+|+.... +.++.+.
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~------------ 435 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVE------------ 435 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHH------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHH------------
Confidence 99999999999999999999999999999999999999999999 68899999997521 1111111
Q ss_pred ccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHH
Q 005154 179 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 258 (711)
Q Consensus 179 p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~ 258 (711)
+++.+.
T Consensus 436 --------------------------------------------------------------------------eEi~el 441 (1289)
T 3avx_A 436 --------------------------------------------------------------------------MEVREL 441 (1289)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhhhcCcceeeeeccccCC--------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 005154 259 IRKGTIAGSFVPVLCGSAFKN--------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 330 (711)
Q Consensus 259 l~~~~~~~~~~Pv~~~Sa~~~--------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 330 (711)
+.........+|++++||++| .|+.+|+++|.+++|.|... .++|+.+.|..
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~--------------------~d~Pfr~pId~ 501 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA--------------------IDKPFLLPIED 501 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG--------------------GGSCCEEECCE
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc--------------------cccceeeeccc
Confidence 111111122368999999999 57999999999999988541 36899999999
Q ss_pred EeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC--ceeecceeEEeccCceeecCeeecCCEEEE--eCC--CccccCccc
Q 005154 331 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETL 404 (711)
Q Consensus 331 ~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl 404 (711)
++.++++|++++|||++|+|++||+|.+.+.+ ...+|++|.... .++++|.|||++++ .|+ +++.+||+|
T Consensus 502 Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~----~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFR----KLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSS----CEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred cccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecC----ceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 99999999999999999999999999987766 578899986542 67999999999988 366 458999999
Q ss_pred cCCCC
Q 005154 405 CDADH 409 (711)
Q Consensus 405 ~~~~~ 409 (711)
++++.
T Consensus 578 ~~~~~ 582 (1289)
T 3avx_A 578 AKPGT 582 (1289)
T ss_dssp ESTTS
T ss_pred ecCCC
Confidence 98754
No 22
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=2.8e-33 Score=302.29 Aligned_cols=243 Identities=13% Similarity=0.080 Sum_probs=198.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
.+||+++||+|+|||||+++|+ ++|+|+......+.++++.++|||||||.+|.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~ 74 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL 74 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH
T ss_pred CCEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH
Confidence 3499999999999999999994 46889999888999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEe-ccCcCCcc-HHHHHHHHHHHhCCcceEEEecc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVN-KMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviN-K~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
.++.++++.+|++|+|+| ..|+..|+++++..+...++|. ++|+| |+|+ ..+ ..+..+++++.+..
T Consensus 75 ~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--------- 143 (370)
T 2elf_A 75 KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--------- 143 (370)
T ss_dssp HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT---------
T ss_pred HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh---------
Confidence 999999999999999999 9999999999999999999999 89999 9999 533 12222333322211
Q ss_pred CCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHH
Q 005154 181 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 260 (711)
Q Consensus 181 ~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~ 260 (711)
.
T Consensus 144 -------------------------------------------------------------------~------------ 144 (370)
T 2elf_A 144 -------------------------------------------------------------------T------------ 144 (370)
T ss_dssp -------------------------------------------------------------------S------------
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred hhhhcCcceeeee--ccccC---CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 005154 261 KGTIAGSFVPVLC--GSAFK---NKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 335 (711)
Q Consensus 261 ~~~~~~~~~Pv~~--~Sa~~---~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 335 (711)
....+|+++ +||++ +.|+++|++.|.+++|+|.... .+ ....|+.++|..++..+
T Consensus 145 ----~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~-----------~~-----~~~~p~r~~v~~vf~~~ 204 (370)
T 2elf_A 145 ----VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAEN-----------AE-----LNSLPARIFIDHAFNVT 204 (370)
T ss_dssp ----TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHH-----------HH-----GGGSCCEEEEEEEECCC
T ss_pred ----CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCC-----------cc-----cccccccccceeEEEcC
Confidence 012368999 99999 9999999999999988762100 00 02356677788888888
Q ss_pred CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe--CC--CccccCccccC
Q 005154 336 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLCD 406 (711)
Q Consensus 336 ~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~Gdtl~~ 406 (711)
+.|++++|||++|+|++||+|++.+.+...+|++|.... +++++|.|||++++. |+ +++++||+|++
T Consensus 205 ~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 205 GKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHD----VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp ---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETT----EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECC----CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999999999999999999999988899999996542 789999999999995 54 46899999997
No 23
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.4e-33 Score=311.45 Aligned_cols=277 Identities=22% Similarity=0.310 Sum_probs=184.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCccee------------eee-cCCCccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~------------~~~-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
+...+|+++||+|||||||+++|++.+|.+... |.. ....+.+|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 446899999999999999999999888765321 110 0113568999999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-------ChhHHHHHHHHHhcCCC-eEEEEeccCcCCccH-H
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANF-F 159 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-------~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~-~ 159 (711)
..++|||||||.+|..++.++++.+|++|+|||+++|+ ..|+++++..+...++| +++|+||+|+...++ .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 99999999999999999999999999999999999986 37999999999999998 889999999965331 0
Q ss_pred HHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHH
Q 005154 160 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 239 (711)
Q Consensus 160 ~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~ 239 (711)
+.++.+.
T Consensus 201 ~~~~~i~------------------------------------------------------------------------- 207 (467)
T 1r5b_A 201 ERYKECV------------------------------------------------------------------------- 207 (467)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhh-hhc-CcceeeeeccccCCCChHH--------------HHHHHHHhCCCCCCCCCCC
Q 005154 240 AMESYLEGNEPDEETIKKLIRKG-TIA-GSFVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDLPAMK 303 (711)
Q Consensus 240 l~e~~l~~~~~~~~~~~~~l~~~-~~~-~~~~Pv~~~Sa~~~~Gi~~--------------Ll~~i~~~lP~p~~~~~~~ 303 (711)
+++...+... ... ...+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 208 -------------~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~----- 268 (467)
T 1r5b_A 208 -------------DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLER----- 268 (467)
T ss_dssp -------------HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHH-----
T ss_pred -------------HHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcC-----
Confidence 0111111111 000 1136899999999999875 45554 44666532
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCe
Q 005154 304 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 383 (711)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 383 (711)
+.++|+.+.|..++.+ .|++++|||.+|+|++||.|.+.+.+...+|++|+.. ...++++
T Consensus 269 ---------------~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~ 328 (467)
T 1r5b_A 269 ---------------KVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISS 328 (467)
T ss_dssp ---------------HHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESE
T ss_pred ---------------CCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeE
Confidence 1368899999888764 5899999999999999999999888888899988753 2467999
Q ss_pred eecCCEEEE--eC-CCccccCccccCCCCc
Q 005154 384 ALAGDIIAL--AG-LKDTITGETLCDADHP 410 (711)
Q Consensus 384 a~aGdIv~i--~g-l~~~~~Gdtl~~~~~~ 410 (711)
|.|||++++ .| .++++.||+|++++++
T Consensus 329 a~aG~~v~i~l~g~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 329 SICGDQVRLRVRGDDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EETTCEEEEEEESCCTTCCTTCEEECSSSC
T ss_pred EcCCCEEEEEEeccHhhCCceEEEeCCCCC
Confidence 999999999 56 5568999999987643
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.1e-32 Score=300.68 Aligned_cols=274 Identities=22% Similarity=0.237 Sum_probs=207.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCccee--e-----eecCCC--------ccccchhhhhhcCceeeeeeEEEEe
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--G-----EVHEGT--------ATMDWMEQEQERGITITSAATTTYW 86 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~--~-----~~~~g~--------~~~d~~~~e~~~giti~~~~~~~~~ 86 (711)
+..++|+++||+|||||||+++|++..+.+... . ....|+ ..+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999877644221 0 001122 3578889999999999999999999
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHH---HHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF---RTR 162 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~---~~~ 162 (711)
++..++|||||||.+|...+..+++.+|++|+|+|+++|...|+++++..+...++| +++|+||+|+...+.. +..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888986 7889999999764311 111
Q ss_pred HHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHH
Q 005154 163 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 242 (711)
Q Consensus 163 ~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e 242 (711)
++++
T Consensus 182 ~~~~---------------------------------------------------------------------------- 185 (434)
T 1zun_B 182 ADYL---------------------------------------------------------------------------- 185 (434)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 005154 243 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 310 (711)
Q Consensus 243 ~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~ 310 (711)
..+..........|++.+||++|.|+++ |++. .+.+|.|..
T Consensus 186 --------------~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~------------ 238 (434)
T 1zun_B 186 --------------KFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASD------------ 238 (434)
T ss_dssp --------------HHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTC------------
T ss_pred --------------HHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCccc------------
Confidence 1111110001236899999999999886 5554 445666543
Q ss_pred ccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEE
Q 005154 311 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 390 (711)
Q Consensus 311 ~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv 390 (711)
+.++|+.+.|..++...+.|+...|||.+|+|++||+|.+.+.++..+|++|.... .++++|.|||++
T Consensus 239 --------~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v 306 (434)
T 1zun_B 239 --------RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAV 306 (434)
T ss_dssp --------CCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEE
T ss_pred --------CCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEE
Confidence 13678999888887766667888999999999999999999888889999998765 479999999999
Q ss_pred EEeCCC--ccccCccccCCCCc
Q 005154 391 ALAGLK--DTITGETLCDADHP 410 (711)
Q Consensus 391 ~i~gl~--~~~~Gdtl~~~~~~ 410 (711)
++...+ +++.||+|++++++
T Consensus 307 ~~~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 307 TLTMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp EEEESSCCCCCTTCEEEETTSC
T ss_pred EEEeCCccccCCccEEECCCCC
Confidence 996543 47899999987654
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=4.4e-32 Score=298.46 Aligned_cols=258 Identities=23% Similarity=0.342 Sum_probs=197.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-------------- 87 (711)
+..+||+++||+|||||||+++|+ | ...|..+.|+++|+|+......+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH---T------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh---C------------CccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 447899999999999999999996 2 23466778999999998876665541
Q ss_pred ---------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCC-CeEEEEeccCcCCc
Q 005154 88 ---------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 156 (711)
Q Consensus 88 ---------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~i-p~ivviNK~D~~~~ 156 (711)
...++|||||||.+|..++.+++..+|++|+|+|+++|. ..|+++++..+...++ |+++|+||+|+...
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 168999999999999999999999999999999999998 8999999998888886 57788999999764
Q ss_pred cH-HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 157 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 157 ~~-~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
+. .+..+++++
T Consensus 153 ~~~~~~~~~i~~-------------------------------------------------------------------- 164 (410)
T 1kk1_A 153 EKALENYRQIKE-------------------------------------------------------------------- 164 (410)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 31 111222211
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 315 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 315 (711)
|+++ . ....+|++++||++|.|+++|+++|.+.+|.|...
T Consensus 165 --------~l~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~---------------- 204 (410)
T 1kk1_A 165 --------FIEG--------------T--VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRD---------------- 204 (410)
T ss_dssp --------HHTT--------------S--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC----------------
T ss_pred --------HHHh--------------c--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc----------------
Confidence 1111 0 01236899999999999999999999999988541
Q ss_pred cccCCCCCeEEEEEEEee--------cCCCCeEEEEEEEeeEeCCCCEEEeCCCCc------------eeecceeEEecc
Q 005154 316 RAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHA 375 (711)
Q Consensus 316 ~~~~~~~p~~~~V~k~~~--------~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~------------~~~v~~i~~~~g 375 (711)
.+.|+.++|.+++. ++++|.+++|||++|+|++||+|.+.+.++ ..+|++|..
T Consensus 205 ----~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~--- 277 (410)
T 1kk1_A 205 ----PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA--- 277 (410)
T ss_dssp ----TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE---
T ss_pred ----cCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE---
Confidence 36788888887764 456799999999999999999999865432 346666653
Q ss_pred CceeecCeeecCCEEEEe-CC------CccccCccccCCCCc
Q 005154 376 NSREDVKVALAGDIIALA-GL------KDTITGETLCDADHP 410 (711)
Q Consensus 376 ~~~~~v~~a~aGdIv~i~-gl------~~~~~Gdtl~~~~~~ 410 (711)
...++++|.|||++++. ++ .++.+|++|++++.+
T Consensus 278 -~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~ 318 (410)
T 1kk1_A 278 -GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 318 (410)
T ss_dssp -TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCS
T ss_pred -CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCC
Confidence 24789999999988884 33 236779998876543
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.2e-32 Score=301.16 Aligned_cols=272 Identities=25% Similarity=0.306 Sum_probs=213.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCccee---------eeecCC----CccccchhhhhhcCceeeeeeEEEEecCe
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---------GEVHEG----TATMDWMEQEQERGITITSAATTTYWNKH 89 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~---------~~~~~g----~~~~d~~~~e~~~giti~~~~~~~~~~~~ 89 (711)
...+|+++||+|+|||||+++|++..+.+... .....+ ...+|..+.|+++|+|+......+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 36899999999999999999999876544321 000111 13568889999999999999999999999
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCCh-------hHHHHHHHHHhcCCC-eEEEEeccCcCCccH---
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-------QSETVWRQADKYGVP-RICFVNKMDRLGANF--- 158 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~-------~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~--- 158 (711)
.++|||||||.+|...+..+++.+|++|+|+|+++|... |+++++..+...++| +++|+||+|+...+.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999988755 899999998889998 788999999974321
Q ss_pred HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCH
Q 005154 159 FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 238 (711)
Q Consensus 159 ~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d 238 (711)
..+.++++
T Consensus 166 ~~i~~~~~------------------------------------------------------------------------ 173 (458)
T 1f60_A 166 QEIVKETS------------------------------------------------------------------------ 173 (458)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChH------------------------HHHHHHHHhCC
Q 005154 239 EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------------------PLLDAVVDYLP 294 (711)
Q Consensus 239 ~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------------------~Ll~~i~~~lP 294 (711)
..+.........+|++.+||++|.|+. .|++++.. +|
T Consensus 174 ------------------~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 174 ------------------NFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp ------------------HHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred ------------------HHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 111111111112578889999998875 47777554 45
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEec
Q 005154 295 SPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH 374 (711)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~ 374 (711)
.|.. +.+.|+.++|..++..++.|++++|||.+|++++||+|.+.+.+...+|++|...
T Consensus 235 ~p~~--------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~- 293 (458)
T 1f60_A 235 QPSR--------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH- 293 (458)
T ss_dssp CCCC--------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-
T ss_pred CCcc--------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-
Confidence 5533 1378999999999999999999999999999999999999888888899998753
Q ss_pred cCceeecCeeecCCEEEE--eCC--CccccCccccCCCC
Q 005154 375 ANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 409 (711)
Q Consensus 375 g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~~ 409 (711)
..++++|.|||++++ .|+ +++++|++|+.+++
T Consensus 294 ---~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 294 ---HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ---TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred ---CeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 267999999999998 465 46899999998764
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=311.05 Aligned_cols=286 Identities=20% Similarity=0.243 Sum_probs=217.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCccee------------ee-ecCCCccccchhhhhhcCceeeeeeEEEEecC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~------------~~-~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 88 (711)
....+|+++||+|+|||||+++|++..+.+... |. .....+.+|..+.|+.+|+|+......+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346799999999999999999999766654321 10 01124567888999999999999999999999
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC-------CChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHH
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 160 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g-------~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~ 160 (711)
+.++|||||||.+|...+..+++.+|++|+|||+++| ...|+++++..+...++| +++|+||+|+...+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~- 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH-
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH-
Confidence 9999999999999999999999999999999999987 578999999999999987 7888999999763311
Q ss_pred HHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHH
Q 005154 161 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 240 (711)
Q Consensus 161 ~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l 240 (711)
..+++.
T Consensus 324 ~~~ei~-------------------------------------------------------------------------- 329 (611)
T 3izq_1 324 RFEEIK-------------------------------------------------------------------------- 329 (611)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111111
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHH---------------HHHHHHHhCCCCCCCCCCCCC
Q 005154 241 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP---------------LLDAVVDYLPSPLDLPAMKGT 305 (711)
Q Consensus 241 ~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~---------------Ll~~i~~~lP~p~~~~~~~~~ 305 (711)
+++...+.........+|++.+||++|.|+.+ |++.+....+.+....+
T Consensus 330 ------------~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p---- 393 (611)
T 3izq_1 330 ------------SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE---- 393 (611)
T ss_dssp ------------HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSS----
T ss_pred ------------HHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCc----
Confidence 01111111111112246899999999999974 34444333211110000
Q ss_pred CCCCcccccccccCCCCCeEEEEEEEeecC---CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEec----cCce
Q 005154 306 DPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH----ANSR 378 (711)
Q Consensus 306 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~----g~~~ 378 (711)
....+.|+.+.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+.+.+|++|.... |...
T Consensus 394 -----------~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~ 462 (611)
T 3izq_1 394 -----------GINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNH 462 (611)
T ss_dssp -----------CCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSC
T ss_pred -----------ccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccc
Confidence 0124789999999998876 579999999999999999999999999899999998763 4556
Q ss_pred eecCeeecCCEEEE--eC--CCccccCccccCCCC
Q 005154 379 EDVKVALAGDIIAL--AG--LKDTITGETLCDADH 409 (711)
Q Consensus 379 ~~v~~a~aGdIv~i--~g--l~~~~~Gdtl~~~~~ 409 (711)
.++++|.|||+|+| .| ..+++.||+|+++++
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cccceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 88999999999999 34 467899999998765
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.98 E-value=5.3e-31 Score=289.53 Aligned_cols=257 Identities=22% Similarity=0.307 Sum_probs=187.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 87 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-------------- 87 (711)
+...+|+++||+|||||||+++|+ | ...|....|.++|+|+........+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT---G------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH---S------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh---C------------CccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 457899999999999999999995 2 23466778889999998776544331
Q ss_pred ---------CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCC-CeEEEEeccCcCCc
Q 005154 88 ---------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 156 (711)
Q Consensus 88 ---------~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~i-p~ivviNK~D~~~~ 156 (711)
...++|||||||.+|..++.+++..+|++|+|+|+++|. ..|+.+++..+...++ |+++|+||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 168999999999999999999999999999999999998 8999999988888776 68899999999764
Q ss_pred cH-HHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhc
Q 005154 157 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 235 (711)
Q Consensus 157 ~~-~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~ 235 (711)
+. ....+++++.+
T Consensus 151 ~~~~~~~~~i~~~l------------------------------------------------------------------ 164 (408)
T 1s0u_A 151 KQAEENYEQIKEFV------------------------------------------------------------------ 164 (408)
T ss_dssp TTTTTHHHHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 31 11222222111
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 005154 236 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 315 (711)
Q Consensus 236 ~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 315 (711)
.+ . ....+|++.+||++|.|+++|+++|.+.+|.|..
T Consensus 165 ----------~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~----------------- 201 (408)
T 1s0u_A 165 ----------KG--------------T--IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR----------------- 201 (408)
T ss_dssp ----------TT--------------S--TTTTCCEEEC------CHHHHHHHHHHHSCCCCC-----------------
T ss_pred ----------hh--------------c--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc-----------------
Confidence 10 0 0122589999999999999999999999998754
Q ss_pred cccCCCCCeEEEEEEEeec--------CCCCeEEEEEEEeeEeCCCCEEEeCCCC------------ceeecceeEEecc
Q 005154 316 RAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG------------KKERIGRLLEMHA 375 (711)
Q Consensus 316 ~~~~~~~p~~~~V~k~~~~--------~~~g~l~~~RV~sG~l~~gd~v~~~~~~------------~~~~v~~i~~~~g 375 (711)
+.+.|+.++|..++.. +++|.++.|||.+|+|++||.|.+.+.+ ...+|++|...
T Consensus 202 ---~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-- 276 (408)
T 1s0u_A 202 ---DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-- 276 (408)
T ss_dssp ---CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET--
T ss_pred ---cCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC--
Confidence 1367889999887643 3478899999999999999999876432 14678888763
Q ss_pred CceeecCeeecCCEEEEeC-----C--CccccCccccCCCC
Q 005154 376 NSREDVKVALAGDIIALAG-----L--KDTITGETLCDADH 409 (711)
Q Consensus 376 ~~~~~v~~a~aGdIv~i~g-----l--~~~~~Gdtl~~~~~ 409 (711)
..++++|.|||++++.. + +++++|++|+.++.
T Consensus 277 --~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 277 --NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp --TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred --CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCC
Confidence 36799999999999942 2 24678999998754
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=2.2e-31 Score=297.64 Aligned_cols=260 Identities=23% Similarity=0.308 Sum_probs=194.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++||+|+|||||+++|+... ....+|..+.|+++|+|+......+.++++.++|||||||.+|
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEETTEEEEECCCSSHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH
Confidence 35799999999999999999996211 1235677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc-HHHHHHHHHHHhCCcceEEEeccC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVG 181 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~ 181 (711)
..++..+++.+|++|+|+|+++|+.+|+.+++..+...++|.++|+||+|+...+ +....+++++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~-------------- 152 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS-------------- 152 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHH--------------
Confidence 9999999999999999999999999999999999999999999999999997532 1111222211
Q ss_pred CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 005154 182 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 261 (711)
Q Consensus 182 ~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~ 261 (711)
.+..
T Consensus 153 ----------------------------------------------------------------------------~l~~ 156 (482)
T 1wb1_A 153 ----------------------------------------------------------------------------ILQS 156 (482)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHhh
Confidence 1111
Q ss_pred h-hhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeE
Q 005154 262 G-TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 340 (711)
Q Consensus 262 ~-~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l 340 (711)
. . ....|++.+||++|.|+++|+++|.+.+|.|.... ++++|+.+.|..++..++.|++
T Consensus 157 ~~~--~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~------------------~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 157 THN--LKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR------------------NTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp SSS--GGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC------------------CSSSCCBCBCSCEECCSSCCCE
T ss_pred hcc--cccceEEEEECcCCCCHHHHHHHHHHhhcCccccc------------------cccccccccceeEEEecCCceE
Confidence 0 0 01257899999999999999999999887552100 1356777778788888899999
Q ss_pred EEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC--ccccCccc-cCC
Q 005154 341 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL-CDA 407 (711)
Q Consensus 341 ~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl-~~~ 407 (711)
+.|||.+|++++||.|...+.+...+|+.|... ..++++|.||+.+++ .|++ ++..||+| +.+
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 999999999999999999888878899988753 257899999999988 4654 47899999 443
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=3e-30 Score=283.10 Aligned_cols=270 Identities=20% Similarity=0.245 Sum_probs=193.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-----ecCeeEEEEeC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDT 96 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-----~~~~~i~liDt 96 (711)
++..+|+++||+|||||||+++|+...... ..+... ++.......+..++++......... .....++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE--TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE--EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc--cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 446899999999999999999997321111 011100 0111111122233333322211111 12378999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCC-ChhHHHHHHHHHhcCC-CeEEEEeccCcCCcc-HHHHHHHHHHHhCCcc
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN-FFRTRDMIVTNLGAKP 173 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~t~~~~~~~~~~~i-p~ivviNK~D~~~~~-~~~~~~~l~~~l~~~~ 173 (711)
|||.+|...+..+++.+|++|+|+|++++. ..|+++++..+...++ |+++|+||+|+...+ ..+..+++.+.+.
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~--- 159 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK--- 159 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT---
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999997 8999999999888876 788999999997643 1122222221111
Q ss_pred eEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHH
Q 005154 174 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 253 (711)
Q Consensus 174 ~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~ 253 (711)
T Consensus 160 -------------------------------------------------------------------------------- 159 (403)
T 3sjy_A 160 -------------------------------------------------------------------------------- 159 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 005154 254 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 333 (711)
Q Consensus 254 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 333 (711)
.. ....+|++.+||++|.|+++|+++|.+++|.|.. +.+.|+.+.|.+++.
T Consensus 160 -------~~--~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------------------~~~~~~~~~v~~~~~ 210 (403)
T 3sjy_A 160 -------GT--WAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------------------DLSQKPVMLVIRSFD 210 (403)
T ss_dssp -------TS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEC
T ss_pred -------hh--CCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------------------CCCCCcEEEEEEEEe
Confidence 00 0123589999999999999999999999988854 136889999998765
Q ss_pred --------cCCCCeEEEEEEEeeEeCCCCEEEeCCCCc------------eeecceeEEeccCceeecCeeecCCEEEEe
Q 005154 334 --------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALAGDIIALA 393 (711)
Q Consensus 334 --------~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 393 (711)
++++|.+++|||.+|++++||+|.+.+.++ ..+|++|... ..++++|.|||++++.
T Consensus 211 v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 211 VNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEE
Confidence 344899999999999999999999865443 4678888763 3789999999999983
Q ss_pred -----CC--CccccCccccCCCCc
Q 005154 394 -----GL--KDTITGETLCDADHP 410 (711)
Q Consensus 394 -----gl--~~~~~Gdtl~~~~~~ 410 (711)
++ +++.+|++|++++.+
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEETTCC
T ss_pred eccccccchhhhccccEEeCCCCC
Confidence 22 246789999987654
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=2e-32 Score=304.02 Aligned_cols=303 Identities=23% Similarity=0.251 Sum_probs=225.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+.++|+++||+|||||||+++|+.... . ....+|+|++.....+.+++..++|||||||.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~----------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--------A----------SGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--------S----------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--------c----------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 3578999999999999999999973211 0 111367888877777788889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 181 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~ 181 (711)
|...+.++++.+|++|+|+|+++|+.+||.+++..+...++|+++++||+|+..++..++.+++. .
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~----~---------- 129 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELS----Q---------- 129 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCC----C----------
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHH----H----------
Confidence 99999999999999999999999999999999999999999999999999997654211100000 0
Q ss_pred CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 005154 182 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 261 (711)
Q Consensus 182 ~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~ 261 (711)
.+ +..+
T Consensus 130 -----------------------~~-------------------------------------------~~~~-------- 135 (501)
T 1zo1_I 130 -----------------------YG-------------------------------------------ILPE-------- 135 (501)
T ss_dssp -----------------------CC-------------------------------------------CCTT--------
T ss_pred -----------------------hh-------------------------------------------hhHH--------
Confidence 00 0000
Q ss_pred hhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEE
Q 005154 262 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 341 (711)
Q Consensus 262 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~ 341 (711)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.++|++++.+++.|+++
T Consensus 136 --~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~------------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 --EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE------------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp --CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST------------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred --HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc------------------cccccccccccceEEEEEeCCcEEEE
Confidence 0012268999999999999999999875421111 01235788999999999999999999
Q ss_pred EEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccCCCCcc---------
Q 005154 342 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI--------- 411 (711)
Q Consensus 342 ~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~~--------- 411 (711)
++||++|+|++||.|.+.+ ...+|+.++..+| .++++|.||+.+.+.|++++ ..||+++...++.
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGF--EYGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EEEEEESBCCTTCEEEEEB--SSCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBT
T ss_pred EEEEEeeEEecCCEEEEcc--ceeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999998754 2345655544443 56899999999999998874 7899996432210
Q ss_pred ---------------ccccCC--C---CCCeEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEE
Q 005154 412 ---------------LLERMD--F---PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 455 (711)
Q Consensus 412 ---------------~l~~~~--~---~~pv~~~~iep~~~~d~~~L~~~L~~l~~~Dpsl~v~ 455 (711)
.++.+. + ..+.+.+.|.+......+.|.++|++|..+++.+++-
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 271 QGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp TCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 111111 1 2446777788888888888888888887776666553
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=2.3e-31 Score=297.84 Aligned_cols=257 Identities=21% Similarity=0.265 Sum_probs=201.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~d 101 (711)
+.+.|+++||+|||||||+++|+.... ......|+|.+.....+.+ ++..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~------------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV------------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH------------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 457899999999999999999973221 1112345666665555555 567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCccHHHHHHHHHHHhCCcceEEEeccC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 181 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~ 181 (711)
|...+.++++.+|++|+|+|+++|..+|+.++|..+...++|+++|+||+|+...+.....+++.+ ++.
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~---------- 133 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA-YDV---------- 133 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH-TTS----------
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHh-hhh----------
Confidence 999999999999999999999999999999999999999999999999999976542221111111 000
Q ss_pred CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 005154 182 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 261 (711)
Q Consensus 182 ~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~ 261 (711)
+.+
T Consensus 134 --------------------------------------------------------------~~e--------------- 136 (537)
T 3izy_P 134 --------------------------------------------------------------VCE--------------- 136 (537)
T ss_dssp --------------------------------------------------------------CCC---------------
T ss_pred --------------------------------------------------------------hHH---------------
Confidence 000
Q ss_pred hhhcCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCCeEE
Q 005154 262 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 341 (711)
Q Consensus 262 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~l~ 341 (711)
..+..+|++++||++|.|+++|+++|...++.+.. ..++++|+.+.|++.+.+++.|+++
T Consensus 137 --~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~------------------~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 137 --DYGGDVQAVHVSALTGENMMALAEATIALAEMLEL------------------KADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp --CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC------------------CCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred --hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc------------------cCCCCCCcceeEEEEEEeCCCceEE
Confidence 00123689999999999999999999988764422 1135789999999999999999999
Q ss_pred EEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEeCCCcc-ccCccccCCCCc
Q 005154 342 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP 410 (711)
Q Consensus 342 ~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~ 410 (711)
+++|.+|+|++||.|... ....+|+.++...| .++++|.||++|+|.|+++. ..||+|+..+++
T Consensus 197 ~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 197 TAIIQRGTLRKGSILVAG--KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEECCSSEEEECCS--SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEecCEEEcCCEEEeC--CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 999999999999998543 23467877776554 67999999999999999885 899999987554
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=6e-20 Score=200.58 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=92.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe-eEEEEeC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDT 96 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~-~i~liDt 96 (711)
..+..+.++|+++|++|+|||||+++|+... ....+...|+|+......+.+.+. .++||||
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~-----------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT 90 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-----------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETTTEEEEEEEC
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCC-----------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEEC
Confidence 3456678999999999999999999995211 112233457788888888888765 9999999
Q ss_pred CCCCchH-------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 97 PGHVDFT-------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 97 PG~~df~-------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
|||.+|. ..+..+++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+...+
T Consensus 91 pG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 91 PGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp SSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred cCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9999874 3367788899999999999 788899999999999999999999999997654
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=1.5e-18 Score=183.01 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=92.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-CeeEEEEeCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPG 98 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~i~liDtPG 98 (711)
++...-.|+++|++|+|||||+|+|+..... ..+. ..+.|.......+.+. +..++||||||
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~---i~s~--------------~~~tT~~~~~~~~~~~~~~~i~lvDTPG 68 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS---IISP--------------KAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCS--------------SSCCCCSCEEEEEEETTTEEEEEEECCC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcc---ccCC--------------CCCceeeEEEEEEecCCCCeEEEEECcC
Confidence 3445678999999999999999999732211 1111 1234555555566677 89999999999
Q ss_pred CCchH----------HHHHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHHhcCCCeEEEEeccCcC
Q 005154 99 HVDFT----------LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 99 ~~df~----------~~~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~~~~ip~ivviNK~D~~ 154 (711)
+.++. ..+..+++.+|++++|+|++++...++... +..+...++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 97644 667889999999999999999999888888 677778899999999999987
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=1.2e-18 Score=182.92 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d- 101 (711)
+..+|+++|++|+|||||+|+|+.....+ .+..++ .|.......+.+++..++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i---vs~~~~--------------tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP---ISPRPQ--------------TTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC---CCSSSC--------------CCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee---ecCCCC--------------ceeEEEEEEEEeCCcEEEEecCccccch
Confidence 45789999999999999999997332211 111111 122222334556789999999999987
Q ss_pred -------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 102 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|++++....+..+++.+... ++|+++|+||+|+...
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 677788899999999999999999888888778888877 8999999999998754
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=3.9e-18 Score=161.00 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc--
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d-- 101 (711)
+++|+++|.+|+|||||+++|+...... .+...+.|.......+.+.+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-----------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-----------------ccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 4789999999999999999997322110 011123455555566677888999999999987
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 102 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -----f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
+...+...++.+|++++|+|++++.......+...+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 4556777889999999999999988777777777777789999999999998643
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.76 E-value=2.2e-18 Score=172.58 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=90.7
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-ecCeeEEEEe
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIID 95 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~i~liD 95 (711)
...+..+.++|+++|++|+|||||+++|+.... .... ....|.|.......+. +++..++|||
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~-~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~l~D 85 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKR-LAFA---------------SKTPGRTQHINYFSVGPAAEPVAHLVD 85 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSS-SSCT---------------TCCCCSCCCEEEEEESCTTSCSEEEEE
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCc-ceee---------------cCCCCcccceEEEEecCCCCCcEEEEc
Confidence 345556789999999999999999999963211 0000 0112345554444444 4578999999
Q ss_pred CCCCCc----------hHHHHHHHHHh---cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 96 TPGHVD----------FTLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 96 tPG~~d----------f~~~~~~~l~~---~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
|||+.+ |...+..+++. +|++++|+|++++.......++..+...++|+++|+||+|+...
T Consensus 86 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 86 LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 999743 23444455555 78899999999998888888888888899999999999998753
No 38
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=1.9e-18 Score=166.18 Aligned_cols=118 Identities=33% Similarity=0.404 Sum_probs=93.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++.++|+++|.+|+|||||+++|+....... ...+++.......+.+++..+++|||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ------------------EAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS------------------SCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC------------------CCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 4578999999999999999999973211100 0112333333445667888999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
|...+..++..+|++++|+|++++...+....+..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 88777778889999999999999888888888888888899999999999997654
No 39
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.5e-17 Score=161.70 Aligned_cols=113 Identities=18% Similarity=0.095 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+. +... ...+ |+......+.+++..+++|||||+.+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~--~~~~---~~~~----------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM--NEVV---HTSP----------------TIGSNVEEIVINNTRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT--TSCE---EEEC----------------CSCSSCEEEEETTEEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhc--CCCC---cCcC----------------CCccceEEEEECCEEEEEEECCCCHhH
Confidence 468999999999999999999972 2111 1000 222223345567899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++++|+|++++.... ....+..+.. .++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 888888999999999999999864333 2233344433 58999999999998753
No 40
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=8.5e-18 Score=160.37 Aligned_cols=113 Identities=19% Similarity=0.042 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+.... .. . ..|+......+.+++..+++|||||+.+|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~------------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~ 64 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--VT------------T-------IPTIGFNVETVTYKNLKFQVWDLGGLTSI 64 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--CC------------C-------CCCSSEEEEEEEETTEEEEEEEECCCGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--CC------------c-------CCcCccceEEEEECCEEEEEEECCCChhh
Confidence 468999999999999999999973211 10 0 01222333456667899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++++|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 8888888999999999999987643322 233333322 58999999999998754
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=4.6e-18 Score=174.34 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
+++|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+++..++||||||+.++.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~---g~~~~v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT---NANQRVGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH---TTSEEEEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 3689999999999999999996 33222222 13668788888888899999999999998875
Q ss_pred H----------HHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 L----------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~----------~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
. ....++ +.+|++|+|+|++. ......+..++.+.++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 63 ANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp ------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred ccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 4 233344 67999999999987 34455667777888999999999999753
No 42
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=4.1e-17 Score=154.58 Aligned_cols=110 Identities=18% Similarity=0.094 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 105 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~~ 105 (711)
+|+++|++|+|||||+++|+..... . ..+ |+......+.+++..+++|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~------------~~~-------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--T------------TIP-------TIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--C------------CCC-------CSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--c------------ccC-------cCceeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 7999999999999999999743211 0 000 222233345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 106 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 106 ~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 8899999999999999987633222 233333332 37899999999998654
No 43
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=8.2e-18 Score=164.92 Aligned_cols=120 Identities=22% Similarity=0.150 Sum_probs=84.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
..++...++|+++|++|+|||||+++|+.... ... ++ ..|+......+.+.+..++|||||
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~----------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~ 71 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQS--SSK----------HI-------TATVGYNVETFEKGRVAFTVFDMG 71 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----------------CC-------CCCSSEEEEEEEETTEEEEEEEEC
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCC--ccc----------cc-------ccccceeEEEEEeCCEEEEEEECC
Confidence 34456789999999999999999999962111 000 00 012223334456788999999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHhc-----------CCCeEEEEeccCcCCc
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY-----------GVPRICFVNKMDRLGA 156 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~~-----------~ip~ivviNK~D~~~~ 156 (711)
|+.+|...+..+++.+|++|+|+|++++..... ...+..+... ++|+++|+||+|+...
T Consensus 72 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 72 GAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999998888889999999999999997654322 2344444333 8999999999998764
No 44
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=3.5e-18 Score=179.53 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC-c
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-D 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~-d 101 (711)
+..+|+|+|++|+|||||+|+|+... ....+..+ +.|.......+.+++..+++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~---~~i~s~~~--------------~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK---ISITSRKA--------------QTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS---EEECCCCS--------------SCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCC--------------CcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 45789999999999999999997321 11111111 223333333466788999999999998 3
Q ss_pred h--------HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 102 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f--------~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
. ...+..+++.+|++++|+|+++ +..+++.+++.+...+.|+++|+||+|+..
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 2 2234556778899999999988 888888888888878999999999999875
No 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=2.4e-17 Score=161.09 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=86.1
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEe
Q 005154 16 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 95 (711)
Q Consensus 16 ~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liD 95 (711)
+...+..+..+|+++|++|+|||||+++|+.... .... ....|.|.......+ +..+++||
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~---------------~~~~~~t~~~~~~~~---~~~~~l~D 75 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKN-LART---------------SSKPGKTQTLNFYII---NDELHFVD 75 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEEE---TTTEEEEE
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCC-cccc---------------CCCCCceeeEEEEEE---CCcEEEEE
Confidence 3444556789999999999999999999972210 0000 011123333332222 34799999
Q ss_pred CCC----------CCchHHHHHHHHHhc---CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 96 TPG----------HVDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 96 tPG----------~~df~~~~~~~l~~~---D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
||| +..|...+...++.+ |++++|+|++++.......+++.+...++|+++|+||+|+...+
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 999 445555566677776 99999999999888887777888888899999999999997643
No 46
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=3.1e-17 Score=159.78 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=84.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+....... . ..|+......+.+.+..++||||||+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-------------M-------IPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------C-------CCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-------------c-------CCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 4468999999999999999999973221100 0 0122233334667889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 98888999999999999999987533322 233333322 58999999999998754
No 47
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=4.2e-19 Score=182.65 Aligned_cols=203 Identities=14% Similarity=0.137 Sum_probs=124.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+|+|++|+|||||+++|+.......... ..++|.......+.+.++.++||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLG----------------SQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT----------------SCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC----------------CCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 44578999999999999999999984332111100 11246666666778899999999999998
Q ss_pred chH-----------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc-----CCCeEEEEe-ccCcCCccHHHH--
Q 005154 101 DFT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVN-KMDRLGANFFRT-- 161 (711)
Q Consensus 101 df~-----------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~-----~ip~ivviN-K~D~~~~~~~~~-- 161 (711)
++. ..+..+++.+|++|+|+|++. +..+...+++.+.+. +.|+++|+| |+|+...++...
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 762 223346678999999999985 777777777777665 678888888 999986654432
Q ss_pred ------HHHHHHHhCCcceEE-EeccC------CCCCceeeeecccceE-EeecCcCCCceeeeecccH--hHHHHHHHH
Q 005154 162 ------RDMIVTNLGAKPLVV-QLPVG------AEDNFKGVVDLVKMKA-IIWSGEELGAKFAYEDIPA--NLQKMAQEY 225 (711)
Q Consensus 162 ------~~~l~~~l~~~~~~~-~~p~~------~~~~~~g~vd~~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~~~~~ 225 (711)
++++.+.++....++ .+|+. ...-|..+++++..+. ++|... ...+.+. ......+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG------LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH------HHHHC-------------
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH------HHHHHHHHHhhhhhHHHH
Confidence 222444444321111 03332 2233445555554433 444321 1123343 344455677
Q ss_pred HHHHHHHHhccCHHHHHHHhc
Q 005154 226 RSQMIETIVELDDEAMESYLE 246 (711)
Q Consensus 226 r~~l~e~l~~~~d~l~e~~l~ 246 (711)
+..+.+.+++.+++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999965
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=2.6e-17 Score=158.65 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+......... ...|.+.......+......++||||||+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE----------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC----------------CCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCC----------------CCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 446799999999999999999997322111000 0112222222222222346899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHhc---CCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADKY---GVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~~---~ip~ivviNK~D~~~ 155 (711)
|...+...++.+|++|+|+|+++..... ...++..+... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 9988899999999999999998754422 23344444443 788999999999864
No 49
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=8.2e-17 Score=155.93 Aligned_cols=114 Identities=20% Similarity=0.112 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+.. ...... . |+......+.+++..+++|||||+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~~~~---------------~----t~g~~~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DISHIT---------------P----TQGFNIKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCEEEE---------------E----ETTEEEEEEEETTEEEEEEECSSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCCccc---------------C----cCCeEEEEEEECCEEEEEEECCCCHH
Confidence 45689999999999999999999521 111000 0 11122234556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 99989999999999999999987543322 22333332 257899999999998754
No 50
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=7.1e-18 Score=186.58 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC-
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV- 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~- 100 (711)
+...+|+++|++|+|||||+|+|+.... .. .+...|+|.+.....+.+++..++||||||+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~---~~--------------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER---VI--------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT---EE--------------EC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc---ee--------------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 4568999999999999999999972211 10 11124667777777888899999999999984
Q ss_pred ---------chHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 101 ---------DFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 ---------df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 34332 346889999999999999999999999888888899999999999998754
No 51
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=6.4e-17 Score=158.35 Aligned_cols=114 Identities=20% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+. +..... . .|+......+.+++..+++|||||+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~~~------------~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL--GEIVTT------------I-------PTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS--SCCEEE------------E-------EETTEEEEEEEETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh--CCcccc------------C-------CcCceeEEEEEECCEEEEEEECCCCHh
Confidence 4568999999999999999999951 211110 0 022233345666889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 98888889999999999999987643322 233333322 37999999999998654
No 52
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=162.14 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=82.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|++|+|||||+++|+........ ...|+......+.+++..+.+|||||+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-------------------ILPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-------------------CCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------cCCccceeEEEEEECCEEEEEEECCCCH
Confidence 345689999999999999999999622110000 0113333344556678999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh------cCCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~------~~ip~ivviNK~D~~~~ 156 (711)
+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 79 RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp TTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 998888889999999999999987532222 233333332 47899999999998653
No 53
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=8.8e-18 Score=174.14 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=85.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..++||||||+.+|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~---g~~~~v~~---------------~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT---GSRQRVGN---------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TTCEEEEE---------------CTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4789999999999999999996 32222222 13667777777888888999999999998875
Q ss_pred H---------HHH-H--HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 L---------EVE-R--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~---------~~~-~--~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
. .+. . ..+.+|++|+|+|++. ......+..++.+.++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1 111 2 2368999999999987 33455666777788999999999999743
No 54
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=2.4e-17 Score=159.47 Aligned_cols=116 Identities=17% Similarity=0.060 Sum_probs=82.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+..+..+|+++|++|+|||||+++|+... ..... + |+......+.+++..+++|||||+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~----------------t~~~~~~~~~~~~~~~~i~Dt~G~ 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNE--VVHTS---P----------------TIGSNVEEIVINNTRFLMWDIGGQ 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTS--CEEEE---C----------------CSSSSCEEEEETTEEEEEEEESSS
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC--CCccC---C----------------cCceeeEEEEECCEEEEEEECCCC
Confidence 34457899999999999999999997321 11100 0 111222345567899999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
.+|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 9998888888999999999999998644332 33344433 268999999999998653
No 55
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=6.4e-17 Score=157.72 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=85.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
...+....++|+++|.+|+|||||+++|+... ...... ..|.|..... ...+..+++|||
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~---------------~~~~t~~~~~---~~~~~~~~i~Dt 75 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK--IAFVSK---------------TPGKTRSINF---YLVNSKYYFVDL 75 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCS---------------SCCCCCCEEE---EEETTTEEEEEC
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc--cccccC---------------CCCCccCeEE---EEECCcEEEEEC
Confidence 34455678899999999999999999997322 111100 1122332222 223467899999
Q ss_pred CCC----------CchHHHHHHHHHhc---CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 97 PGH----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 97 PG~----------~df~~~~~~~l~~~---D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
||+ ..|...+..+++.+ |++++|+|++.+.......++..+...++|+++|+||+|+...
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 76 PGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp CCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 993 34555455556655 9999999999988888888888888889999999999998754
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=4.3e-17 Score=155.01 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+..... .. .+...|.+.......+...+..+++|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH--EF--------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--TT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC--CC--------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 3578999999999999999999732211 00 0011233333333334334678999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 9889999999999999999987543322 233344433 3688899999999854
No 57
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=4.8e-17 Score=156.22 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=83.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.++..+|+++|++|+|||||+++|+......... ...|.+.......+......+++|||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP----------------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT----------------TSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------CccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 4557899999999999999999997432211000 011233333333333344689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+|...+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999876433332 22233332 5789999999999853
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=4.1e-17 Score=159.52 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|.+|+|||||+++|+........ ....|.+.......+......++||||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI----------------SPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC----------------CCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCc----------------CCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 45689999999999999999999733211000 00123344444444444567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|...+...++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 998899999999999999999875443332 33333433 3789999999999853
No 59
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=9.9e-18 Score=163.80 Aligned_cols=129 Identities=21% Similarity=0.131 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeE-EEEecCeeEEEEeCCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~-~~~~~~~~i~liDtPG~~ 100 (711)
++..+|+++|++|+|||||++.+........ .+ +......+.+...|.+...... .+......+++|||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~-~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR-KG-----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG-BC-----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc-cc-----cccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 4568999999999999999976642111100 00 0000000000001111111111 122245689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh---------cCCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---------YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~---------~~ip~ivviNK~D~~~~ 156 (711)
+|...+..+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 999999999999999999999997655555444433322 58999999999998653
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=159.78 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCC
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 97 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtP 97 (711)
+...++..+|+++|++|+|||||+++|+..... .. .....|.+.......+......++|||||
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 85 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--EN--------------ISATLGVDFQMKTLIVDGERTVLQLWDTA 85 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEEEEEETTEEEEEEEEECT
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC--cc--------------CCCCccceeEEEEEEECCEEEEEEEEECC
Confidence 344566799999999999999999999732211 00 00111233333333333344679999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRL 154 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~ 154 (711)
|+.+|...+..+++.+|++|+|+|++++...... .++..+.. .++|+++|+||+|+.
T Consensus 86 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 9999999999999999999999999875443332 23333332 479999999999975
No 61
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=2.2e-17 Score=183.67 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC--
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG-- 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG-- 98 (711)
.+...+|+++|++|+|||||+++|+.... ... ....|+|.......+.+++..++||||||
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~---~~~--------------~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER---VIV--------------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT---EEE--------------CC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc---ccc--------------CCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 34578999999999999999999972211 111 11235577776777888899999999999
Q ss_pred --------CCchHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 99 --------HVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 99 --------~~df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
++.|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 5666554 345889999999999999999999999999999999999999999998754
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=1.9e-17 Score=161.31 Aligned_cols=119 Identities=15% Similarity=0.053 Sum_probs=83.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.+...+|+++|.+|+|||||+++|+......... ...|.+.......+......++||||||+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV----------------STVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------------CCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC----------------CceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 4557899999999999999999997432111000 011334433333333345789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 998888889999999999999986543322 233444444 3789999999999854
No 63
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=2.4e-17 Score=159.94 Aligned_cols=114 Identities=21% Similarity=0.151 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+... . .. . ..|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~---~~---------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--V---DT---------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--C---SS---------C-------CCCSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--C---Cc---------c-------cccCccceEEEEECCEEEEEEECCCCHh
Confidence 456899999999999999999996211 0 00 0 0022223345556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 88888888999999999999987643322 233333332 47999999999998754
No 64
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.71 E-value=2.8e-17 Score=160.60 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=81.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|.... .... ..|+......+.+++..+++|||||+.+|.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~--~~~~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR--LATL-------------------QPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC--CCCC-------------------CCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC--CCcc-------------------ccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 4689999999999999999997322 1100 113333345666788999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|++++..... ...+..+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 777788899999999999997643332 22333332 25799999999999975
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=7.1e-17 Score=159.05 Aligned_cols=118 Identities=17% Similarity=0.063 Sum_probs=82.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...+|+++|++|+|||||+++|+......... ...|.+.......+......++||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFV----------------STVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC----------------CCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----------------CccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 447899999999999999999997321110000 0113333333333333456899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++|+|+|++++..... ..++..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999999999987543322 233344443 4789999999999865
No 66
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.71 E-value=4.2e-17 Score=167.41 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+ |.....+. ..|+|+......+.+++..++||||||+.+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~---g~~~~~~~---------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~ 64 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALT---GTKQYVAN---------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHH---TTCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 346789999999999999999996 32222222 136788888888888899999999999987
Q ss_pred hHH------HHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 102 FTL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 102 f~~------~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
|.. .....+ ..+|++++|+|++.. .....++.++...++|+++|+||+|+.
T Consensus 65 ~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 65 LGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp CCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 743 123333 478999999999873 334456677788899999999999974
No 67
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=8.2e-17 Score=155.62 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|++|+|||||+++|+........ ..+ .+... .....+......+++|||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-----DPT-----------IEDSY-LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCC-----------cccee-EEEEEeCCcEEEEEEEECCCch
Confidence 345789999999999999999999732111000 000 01111 1112222223457779999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCCh-----hHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~-----~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+|......+++.+|++++|+|+++.... +...+.+.....++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9988889999999999999999875322 222222333346899999999999865
No 68
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=6.8e-17 Score=167.28 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=87.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+.++|+++|++|+|||||+++|+ |.....+. ..|+|+......+.+++..+++|||||+.+|
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~---g~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALT---GLRQHVGN---------------WPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHH---TTCEEEEE---------------CTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence 36899999999999999999996 33222222 2366788888888899999999999999987
Q ss_pred HH------HHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcC-CCeEEEEeccCcC
Q 005154 103 TL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 154 (711)
Q Consensus 103 ~~------~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~-ip~ivviNK~D~~ 154 (711)
.. .+..++ ..+|++++|+|++.+ .....++.++...+ +|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 64 TAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 54 233333 469999999999875 45566677777788 9999999999964
No 69
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=7.1e-17 Score=155.29 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
++.+..+|+++|++|+|||||+++|+........ ..+ .+.... ..+.+++ ..+++||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-----------~~~~~~---~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY-----DPT-----------IEDSYT---KICSVDGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC-----CTT-----------CCEEEE---EEEEETTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc-----CCC-----------cCceEE---EEEEECCEEEEEEEEECC
Confidence 4456789999999999999999999843211000 000 011111 2233343 578999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHH----HHHHhcCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW----RQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~----~~~~~~~ip~ivviNK~D~~~ 155 (711)
|+.+|...+...++.+|++++|+|+++...... ..++ +.....++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999998888889999999999999987432221 2222 222345899999999999854
No 70
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=4.8e-17 Score=180.09 Aligned_cols=113 Identities=23% Similarity=0.308 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc---
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d--- 101 (711)
++|+|+|.+|+|||||+|+|+..... . .+...|+|.+.....+.|.+..+++|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~---~--------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA---I--------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEETTEEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc---e--------------ecCCCCCccceeeEEEEECCeEEEEEECCCcccccc
Confidence 68999999999999999999722111 0 112346788888888899999999999999774
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
+...+..+++.+|++|+|+|++.+.......+...+++.++|+++|+||+|..
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 34567788999999999999999998888778787888899999999999964
No 71
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=9.9e-17 Score=155.37 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=82.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG 98 (711)
.++..+|+++|++|+|||||+++|+........ ...++.......+.+++ ..+++|||||
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 68 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINVGGKYVKLQIWDTAG 68 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 355789999999999999999999743221100 01123233333344444 6899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHH---HhcCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQA---DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~---~~~~ip~ivviNK~D~~~ 155 (711)
+.+|...+..+++.+|++|+|+|+++........ ++..+ ...++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp SGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999998754433322 22222 235789999999999853
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.71 E-value=8.6e-17 Score=153.05 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+........ ....|.+.......+......+.+|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI----------------NPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCceeEEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 3579999999999999999999733211000 011233443333333334478999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
...+...++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 88889999999999999999876443332 33344433 4678899999999864
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=8.1e-17 Score=156.73 Aligned_cols=119 Identities=18% Similarity=0.070 Sum_probs=81.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----------C
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----------K 88 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-----------~ 88 (711)
+.++..+|+++|++|+|||||+++|+.......... + .|.+... ...+... .
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-----t-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~ 69 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT-----T-----------VGIDFRE-KRVVYRANGPDGAVGRGQR 69 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC-----C-----------CSEEEEE-EEEEECTTSCCCSSCCCEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc-----c-----------cceeeee-EEEEEecCCcccccccCcE
Confidence 345678999999999999999999974221100000 0 0111110 1122222 3
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
..+++|||||+.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 689999999999999999999999999999999987544333 233333333 5899999999999854
No 74
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=159.16 Aligned_cols=118 Identities=21% Similarity=0.186 Sum_probs=81.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
+.++..+|+++|.+|+|||||+++|+.... .. +....++.......+.+++ ..++|||||
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTF--CE----------------ACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------------------------CCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCC--Cc----------------CCCCccceeEEEEEEEECCeEEEEEEEeCC
Confidence 345568999999999999999999952111 00 0011122222333344444 689999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh---cCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|+.+|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..
T Consensus 84 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999999876544433222 33333 4789999999999854
No 75
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=156.33 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=83.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
+...+|+++|++|+|||||+++|+....... ...+++.......+.+++ +.++||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4578999999999999999999973221110 011223344444455555 67999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999889999999999999999987543222 233333333 37899999999998654
No 76
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=152.22 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+......... ...|.+.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE----------------PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----------------CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEEEEEECCEEEEEEEEECCCChhhh
Confidence 4689999999999999999997432110000 011223333333332234689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~~ 156 (711)
..+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 8899999999999999999875433322 22333332 47899999999998643
No 77
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.71 E-value=6e-17 Score=157.77 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=78.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|++|+|||||+++|+......... ...|.+.......+......++||||||+.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE----------------ATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC----------------CCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------CCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 4567899999999999999999997422110000 001222222222222223689999999999
Q ss_pred chH-HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 101 DFT-LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~-~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
+|. ..+..+++.+|++|+|+|+++...... ..++..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 987 677888999999999999986433222 22222222 35799999999999854
No 78
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=157.65 Aligned_cols=120 Identities=18% Similarity=0.109 Sum_probs=81.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEe
Q 005154 18 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIID 95 (711)
Q Consensus 18 ~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liD 95 (711)
..+.++..+|+++|.+|+|||||+++|+.... ... ....++.......+.+++ ..++|||
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~D 84 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAF--SER----------------QGSTIGVDFTMKTLEIQGKRVKLQIWD 84 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEETTEEEEEEEEC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCC--CCC----------------CCCCcceEEEEEEEEECCEEEEEEEEE
Confidence 33445678999999999999999999973221 000 000111222223344444 6899999
Q ss_pred CCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 96 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 96 tPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|||+.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 99999999999999999999999999986433222 233344433 5689999999999864
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=157.43 Aligned_cols=119 Identities=15% Similarity=0.060 Sum_probs=83.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.++..+|+++|++|+|||||+++|+......... ...|.+.......+......++||||||+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR----------------TTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC----------------CCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4557899999999999999999997432211100 011233333333333345789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+|...+..+++.+|++|+|+|++....... ..++..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 998888999999999999999987543322 233344433 3789999999999864
No 80
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=1.8e-16 Score=152.19 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC---eeEEEEeCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPG 98 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~---~~i~liDtPG 98 (711)
.+..+|+++|++|+|||||+++|+..... .+....++.......+.+.+ ..+++|||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC
Confidence 34689999999999999999999732210 01111122222233444444 7899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh-----cCCC-eEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK-----YGVP-RICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~-----~~ip-~ivviNK~D~~~ 155 (711)
+..|...+..+++.+|++++|+|+++....+.. .++..+.. .+.| +++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999988889999999999999999875433222 23333333 2677 688999999854
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.2e-17 Score=159.20 Aligned_cols=118 Identities=18% Similarity=0.068 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+...+|+++|++|+|||||+++|+........... .|++.......+......++||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVST----------------VGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEE----------------ETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCC----------------eeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 45689999999999999999999854321111111 13344444444555678999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++|+|+|+++..... ...++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999999999998643322 2333444444 4789999999999854
No 82
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=1.9e-17 Score=161.28 Aligned_cols=114 Identities=17% Similarity=0.079 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+ .+.... .. + |+......+.+++..+++|||||+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~--~~~~~~---~~---------~-------t~~~~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH--LGDVVT---TV---------P-------TVGVNLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC--CSCCEE---EC---------S-------STTCCEEEEEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHH--cCCCCC---cC---------C-------CCceEEEEEEECCEEEEEEECCCCHh
Confidence 346899999999999999999995 121110 00 0 22222334556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 87777778899999999999987643332 233333332 47899999999998754
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=1.3e-16 Score=153.13 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
+..+|+++|++|+|||||+++|+........ ...++.......+.+++ ..+.+|||||+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 3578999999999999999999732211100 01122233333344444 589999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH---hcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
+|...+..+++.+|++++|+|+++...... ..++..+. ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999888999999999999999986433222 22333332 24789999999999854
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=7.2e-17 Score=157.57 Aligned_cols=123 Identities=15% Similarity=0.049 Sum_probs=83.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
......+..+|+++|++|+|||||+++|+......... ...|.+.......+......++||||
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~Dt 77 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------------LTIGVEFGARMVNIDGKQIKLQIWDT 77 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEETTEEEEEEEECC
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------------CcccceeEEEEEEECCEEEEEEEEEC
Confidence 33444567899999999999999999997422211000 01122333322222223368999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
||+.+|...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+..
T Consensus 78 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 9999998888889999999999999987543332 233334433 3789999999999854
No 85
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.9e-17 Score=158.70 Aligned_cols=114 Identities=21% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+ .+.. ... ..|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~--~~~~---~~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ--IGEV---VTT----------------KPTIGFNVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC--CSEE---EEE----------------CSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHh--cCCc---Ccc----------------CCcCccceEEEEECCEEEEEEECCCCHh
Confidence 457899999999999999999995 1111 110 0122222344556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 88888888999999999999987644332 23334433 357899999999998653
No 86
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3e-16 Score=149.44 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=77.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+..........+ .+.+.. ...........+++|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----------------~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT----------------VEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCC----------------SCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----------------ccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 578999999999999999999732111000000 011111 111222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|+++..... ...++..+.+ .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 99999999999999999998643222 2334444433 3799999999999854
No 87
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=1.9e-16 Score=149.95 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+..... ... ..+ . + +.......+......+++|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~---~~~-~----------~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKY---DPT-I----------E-DFYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCC---CTT-C----------C-EEEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccC---CCC-c----------c-eeEEEEEEECCEEEEEEEEECCCchhhH
Confidence 468999999999999999999742211 000 000 0 0 1111112222233569999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
......++.+|++++|+|+++...... ...+..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 999999999999999999986433221 2222222 235899999999999853
No 88
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=2e-16 Score=151.79 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ------------------LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCC------------------CCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3468999999999999999999973221100 001112222233344444 58999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHh-------cCCCeEEEEeccCcC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-------YGVPRICFVNKMDRL 154 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~-------~~ip~ivviNK~D~~ 154 (711)
.+|...+...++.+|++++|+|+++........ ++..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999988888999999999999998754333222 2222221 578999999999986
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=1.2e-16 Score=157.16 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|.. +.... + ..|+......+.+++..+++|||||+.+|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~--~~~~~------------~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD--DRLGQ------------H-------VPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC--C-------------------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CcEEEEECCCCCCHHHHHHHHhc--CCCCc------------c-------CCCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 56899999999999999999951 11100 0 013333344566788999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 777788999999999999987543322 23333332 25799999999999975
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=2.1e-16 Score=149.91 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+........ ..+. +... .....+......+++|||||+.+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t~-----------~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY-----DPTI-----------EDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC-----CCCS-----------EEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCCc-----------cceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 468999999999999999999742111000 0000 0011 1111122235689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
..+...++.+|++++|+|+++...... ..++..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 889999999999999999986432221 22222232 34899999999999864
No 91
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=155.95 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=83.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG 98 (711)
.++..+|+++|++|+|||||+++|+... .. .+...+++.......+.+++ ..+++|||||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 67 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT--FS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC--CC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCC
Confidence 4567899999999999999999995111 00 01112334444445555566 7899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHh--cCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
+.+|...+..+++.+|++++|+|++++....... ++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 9998888888899999999999998754433322 2333333 3589999999999754
No 92
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=1.4e-16 Score=151.84 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+ +.....+. ..|+|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~---~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT---GENVYIGN---------------WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH---CCSSSCC--------------------CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCeeccC---------------CCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 4789999999999999999996 21111110 12445555555666778999999999998874
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 104 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 104 ------~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.....+++ .+|++++|+|++.. .....++..+.+.++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 22234444 78999999999862 223345556666799999999999974
No 93
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=4.2e-16 Score=150.67 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
.+..+|+++|++|+|||||+++|+..... . . ...+ +.......+.+.+ +.+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~--~-~~~t--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--E--D-YEPT--------------KADSYRKKVVLDGEEVQIDILDTAGQ 76 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--C--S-CCTT--------------CCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--C--c-CCCc--------------cceEEEEEEEECCEEEEEEEEECCCC
Confidence 45689999999999999999999742210 0 0 0000 1111112223333 58999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999999864332221 2222222 24899999999999854
No 94
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=6.3e-16 Score=152.29 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=79.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
+..+..+|+++|++|+|||||+++|+........ .++ +.......+.+++ ..+.|||||
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t--------------~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----EPT--------------KADSYRKKVVLDGEEVQIDILDTA 70 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-----CTT--------------CCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCc--------------cceEEEEEEEECCEEEEEEEEcCC
Confidence 3455789999999999999999999733211000 000 1111112233343 589999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
|+.+|...+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 9999999999999999999999999864332222 22233322 3899999999999864
No 95
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.69 E-value=6.3e-16 Score=146.41 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~d 101 (711)
..+|+++|++|+|||||+++|+...-... ...+ .+.+. ...+.++ ...+.+|||||+.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t-----------~~~~~---~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPT-----------KADSY---RKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCC-----CCCC-----------cceEE---EEEEEECCEEEEEEEEECCCcch
Confidence 57999999999999999999974321000 0000 01111 1122333 35899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 999999999999999999999864332222 2222222 24799999999999854
No 96
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.69 E-value=1e-16 Score=152.28 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+.... .... . . ..|.+.......+......+.+|||||+.+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~---~-~----------t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIF--TKDY---K-K----------TIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCC--CCCS---S-C----------CCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCC--CCCC---C-C----------ceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 3568999999999999999999973211 1000 0 0 011122222222222346899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 88888889999999999999987542222 223333332 4899999999999864
No 97
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=2.3e-17 Score=165.08 Aligned_cols=124 Identities=20% Similarity=0.150 Sum_probs=88.5
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeC
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 96 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 96 (711)
......+..+|+++|.+|+|||||+++++..... ... ....|.+.......+...+..+++|||
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~--~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt 71 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE--KKY--------------VATLGVEVHPLVFHTNRGPIKFNVWDT 71 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHT--CEE--------------ETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCC--CCC--------------CCccceeEEEEEEEECCEEEEEEEEeC
Confidence 3344556789999999999999999996522111 000 011245665555555556678999999
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh--cCCCeEEEEeccCcCCc
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
||+.+|...+..+++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+...
T Consensus 72 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp CSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred CChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99999988888899999999999999975444333223 33333 28999999999998653
No 98
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.69 E-value=3.7e-16 Score=151.49 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
+..+|+++|++|+|||||+++|+........ .++ +.......+..++ ..+++|||||+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----DPT--------------IEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----CTT--------------CCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCC--------------chheEEEEEEECCcEEEEEEEECCCcH
Confidence 3578999999999999999999733211000 001 1111112222333 468889999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
+|...+..+++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp --CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9998899999999999999999874332222 2222222 24799999999999864
No 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=156.60 Aligned_cols=118 Identities=15% Similarity=0.022 Sum_probs=81.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
+..+..+|+++|++|+|||||+++|+........ ..+ . +... ...+.+++ ..+++||||
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-~----------~~~~---~~~~~~~~~~~~~~i~D~~ 74 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY-----VPT-V----------FDHY---AVSVTVGGKQYLLGLYDTA 74 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC-----CCS-S----------CCCE---EEEEESSSCEEEEEEECCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCc-c----------ccee---EEEEEECCEEEEEEEEECC
Confidence 3345689999999999999999999843211000 000 0 1111 11223333 689999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
|+.+|...+..+++.+|++++|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred CCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 9999988888889999999999999875433322 334445544 8999999999999764
No 100
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.69 E-value=1e-16 Score=152.54 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~ 100 (711)
...+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF------------------ITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCC------------------CCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 3579999999999999999999732211000 0111222222233333 3579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRL 154 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~ 154 (711)
+|...+...++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 998888889999999999999987543222 233333333 378999999999984
No 101
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.3e-16 Score=150.65 Aligned_cols=117 Identities=14% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+....... .. ...++.......+..++ ..+++|||||+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG---TF--------------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC---CC--------------CCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC---Cc--------------CCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 4578999999999999999999974322100 00 01112222222223343 58999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 9998888889999999999999987543322 233333333 5789999999999865
No 102
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=4.6e-16 Score=152.57 Aligned_cols=64 Identities=25% Similarity=0.204 Sum_probs=51.9
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH-hcCCCeEEEEeccC
Q 005154 89 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KYGVPRICFVNKMD 152 (711)
Q Consensus 89 ~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~-~~~ip~ivviNK~D 152 (711)
..++||||||+.+|...+...++.+|++|+|+|++++...+.. .++..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999998899999999999999999876544333 2333333 35689999999999
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.2e-16 Score=153.79 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=69.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---CeeEEEEeCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTP 97 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~i~liDtP 97 (711)
.++..+|+++|++|+|||||+++|+......... ..++.......+.++ ...+++||||
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK------------------ATIGADFLTKEVTVDGDKVATMQVWDTA 66 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---------------------CCCSCEEEEECCSSSCCEEEEEECCC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC------------------CccceEEEEEEEEEcCCcEEEEEEEECC
Confidence 3457899999999999999999997432111000 011111122223332 4689999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHH-HHHHHHh-------cCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~-~~~~~~~-------~~ip~ivviNK~D~~~ 155 (711)
|+.+|...+...++.+|++|+|+|+++........ ++..+.. .++|+++|+||+|+..
T Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 67 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred CChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 99999888888899999999999998754333222 2222222 5789999999999853
No 104
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.3e-16 Score=155.68 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL----------------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC----------------CCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 4579999999999999999999743211000 001123333333334334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
...+..+++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 88889999999999999999875433322 33344433 4689999999999843
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=4.5e-17 Score=157.19 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
+..+|+++|++|+|||||+++|+..... . .. .. ..+.+. ...+..++ +.+++|||||+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~--~~-~~-----------t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--D--SY-DP-----------TIENTF---TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--S--CC-CT-----------TCCEEE---EEEEEETTEEEEEEEEECCCCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--C--CC-CC-----------CccccE---EEEEEECCEEEEEEEEeCCCch
Confidence 4689999999999999999999732211 0 00 00 011122 22223344 678999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-----HHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-----~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+|.......++.+|++++|+|+++....... .+.+.+...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 9877777788999999999999864322222 222222345899999999999854
No 106
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=1.5e-16 Score=158.50 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=79.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec----------Cee
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHR 90 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------~~~ 90 (711)
.++..+|+++|++|+|||||+++|+........... .+.+.......+... ...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT----------------VGIDFREKRVVYNAQGPNGSSGKAFKVH 85 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE----------------EEEEEEEEEEEEEC-------CCEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCc----------------eeEEEEEEEEEECCccccccccCceeEE
Confidence 355789999999999999999999722111000000 011111112222212 568
Q ss_pred EEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh----cCCCeEEEEeccCcCC
Q 005154 91 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 91 i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~----~~ip~ivviNK~D~~~ 155 (711)
++||||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 99999999999999999999999999999999875443332222 22222 5789999999999854
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.68 E-value=3.4e-16 Score=150.37 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|.+|+|||||+++|+..... .... ..|.|.......+.+++..+.+|||||+.++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~--~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA--IVTD---------------IAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCS---------------STTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--eeeC---------------CCCceeceeeEEEEECCeEEEEEECCCcccch
Confidence 468999999999999999999732111 0000 11334444444566678889999999987642
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc---CCCeEEEEeccCcC
Q 005154 104 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRL 154 (711)
Q Consensus 104 --------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~---~ip~ivviNK~D~~ 154 (711)
.....+++.+|++++|+|+++........++..+... ++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1133468899999999999987665555555555443 68999999999974
No 108
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=1e-16 Score=154.95 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
+...+|+++|++|+|||||+++|+..... .+...+++.......+.+++ ..++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 44789999999999999999999622110 00011223333333444455 78999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.+|...+...++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 9998888888999999999999987543222 233344443 3789999999999864
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=168.34 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+|+|++|+|||||+++|+. +.... . . .|+......+.+++..++||||||+.+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~--~~~~~--~----------~-------pT~~~~~~~~~~~~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL--GEIVT--T----------I-------PTIGFNVETVEYKNISFTVWDVGGQDKI 222 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS--SCCEE--E----------E-------EETTEEEEEEEETTEEEEEEECC-----
T ss_pred CcceEEEECCCCccHHHHHHHHhC--CCCCC--c----------c-------cccceEEEEEecCcEEEEEEECCCCHhH
Confidence 345899999999999999999951 11110 0 0 1444445567778999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHH-HHHHh---cCCCeEEEEeccCcCCcc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADK---YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~-~~~~~---~~ip~ivviNK~D~~~~~ 157 (711)
...+..+++.+|++|+|+|+++...... ...+ ..+.. .++|+++|+||+|+....
T Consensus 223 ~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 8889999999999999999986543322 2222 22222 388999999999997643
No 110
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=150.01 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc-
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d- 101 (711)
+..+|+++|++|+|||||+++|+.... .... ...|.+.......+......+++|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE--RDLH---------------EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------C---------------CCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC--cccc---------------CccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 467999999999999999999972111 0000 0123343333333322335789999999988
Q ss_pred -hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHhc----CCCeEEEEeccCcCCc
Q 005154 102 -FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY----GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 -f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~~----~ip~ivviNK~D~~~~ 156 (711)
+.......++.+|++++|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 44445566788999999999986433222 2334444443 7999999999998653
No 111
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.1e-16 Score=156.04 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=81.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG 98 (711)
.++..+|+++|.+|+|||||+++|+........ ...++.......+.+++ ..++||||||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ------------------GATIGVDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCC------------------CCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 355789999999999999999999732211000 01112222223344444 5899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
+.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999888899999999999999987543322 223333332 4789999999999853
No 112
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.68 E-value=1e-16 Score=152.70 Aligned_cols=118 Identities=17% Similarity=0.054 Sum_probs=72.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+.......... ..+.+.......+......+.+|||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT----------------TLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCC----------------CCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCC----------------ccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3467999999999999999999974321110000 001122222222212335789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH---hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
|.......++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 988888888999999999999875433322 2223332 25789999999999854
No 113
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=1e-16 Score=165.56 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+ |.....+. + .|+|+......+.+ +..+++|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~---g~~~~v~~---------~------pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT---GHNQRVGN---------W------PGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH---CCCCCCCS---------S------SCCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------C------CCCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 5789999999999999999996 32111111 1 25666665555555 7889999999999875
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 104 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 104 ------~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.....+++ .+|++++|+|++.. .....+..++.+.++|+++|+||+|+.
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 23344555 49999999999862 233445566777899999999999974
No 114
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=2.1e-16 Score=156.68 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=80.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
+.++..+|+++|++|+|||||+++|+....... ....++.......+.+++ ..++|||||
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 77 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS------------------FITTIGIDFKIKTVDINGKKVKLQLWDTA 77 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCS------------------SSCCCSCCEEEEEEEETTEEEEEEEECCT
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------cCCcccceEEEEEEEECCEEEEEEEEeCC
Confidence 345578999999999999999999973221100 001122222333444555 689999999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh---cCCCeEEEEeccCcC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRL 154 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~---~~ip~ivviNK~D~~ 154 (711)
|+.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 78 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999998888889999999999999987543222 233333333 378999999999984
No 115
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=5.5e-16 Score=154.08 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=84.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---CeeEEEEeCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 99 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~i~liDtPG~ 99 (711)
+..+|+++|++|+|||||+++|+..... .. ..|+......+.++ +..+++|||||+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DT-------------------QTSITDSSAIYKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CB-------------------CCCCSCEEEEEECSSTTCCEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cc-------------------cCCcceeeEEEEecCCCccEEEEEECCCC
Confidence 4689999999999999999999743211 00 00111122224444 678999999999
Q ss_pred CchHH-HHHHHHHhcCeEEEEEeCCCCCChhHH---HHHHHH-H-----hcCCCeEEEEeccCcCCcc-HHHHHHHHHHH
Q 005154 100 VDFTL-EVERALRVLDGAICLFDSVAGVEPQSE---TVWRQA-D-----KYGVPRICFVNKMDRLGAN-FFRTRDMIVTN 168 (711)
Q Consensus 100 ~df~~-~~~~~l~~~D~~llvvda~~g~~~~t~---~~~~~~-~-----~~~ip~ivviNK~D~~~~~-~~~~~~~l~~~ 168 (711)
.+|.. .+..+++.+|++|+|+|++. ...... ..|... . ..++|+++|+||+|+.... .....+.+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 99987 56677899999999999986 222222 223222 1 2468999999999997643 55555666555
Q ss_pred hC
Q 005154 169 LG 170 (711)
Q Consensus 169 l~ 170 (711)
++
T Consensus 144 l~ 145 (214)
T 2fh5_B 144 LN 145 (214)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 116
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=6.1e-16 Score=151.71 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=79.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE---ecCeeEEE
Q 005154 17 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINI 93 (711)
Q Consensus 17 ~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~---~~~~~i~l 93 (711)
...+.++..+|+++|..|+|||||++++.. ..... ...+.+......... .....++|
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i 73 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN----------------ETLFLESTNKIYKDDISNSSFVNFQI 73 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHS---CCCGG----------------GGGGCCCCCSCEEEEECCTTSCCEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc----------------ceeeeccccceeeeeccCCCeeEEEE
Confidence 344566788999999999999999998752 11110 011112222222222 24578999
Q ss_pred EeCCCCCchHHHH---HHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 94 IDTPGHVDFTLEV---ERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 94 iDtPG~~df~~~~---~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
|||||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 74 WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp EECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred EECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 9999999987776 789999999999999998733333333333332 38899999999998754
No 117
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.67 E-value=1.2e-16 Score=157.59 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+........ ...++.......+..+ ...++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC------------------CCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 45789999999999999999999743221100 0111222222233333 368999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHHh-------cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~~-------~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 99887778888999999999999875433322222 22221 4789999999999863
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.67 E-value=1.9e-16 Score=156.40 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+........ ...++.......+.+++ ..++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY------------------ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC------------------CCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 45789999999999999999999742211000 01112222222333443 58999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99988888889999999999999875443332 22333333 4689999999999865
No 119
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.67 E-value=2.3e-16 Score=149.67 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+ +....... ...|.+.. ....+......+++|||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~---~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG---GVEDGPEA--------------EAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC---CC------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHc---CccccCCC--------------CccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 4689999999999999999995 21111000 01122321 222232344678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
......++.+|++++|+|.++...... ..++..+.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 888899999999999999986433222 233344433 47899999999998653
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=9.7e-17 Score=177.49 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=84.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC---
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV--- 100 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~--- 100 (711)
.++|+++|++|+|||||+|+|+..... ..+...|+|.+.....+.|.+..+++|||||+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-----------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~ 65 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-----------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC----------------------------CEEEECTTCSSCCEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-----------------eecCCCCCccceEEEEEEECCceEEEEECCCCCCcc
Confidence 368999999999999999999521110 112234778777777888889999999999986
Q ss_pred -----chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 101 -----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 -----df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.|...+..+++.+|++|+|+|+.++.......+.+.+++.++|+++|+||+|...
T Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 66 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp -CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 5667788899999999999999999998888888888888999999999999854
No 121
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=1.1e-15 Score=144.38 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~~d 101 (711)
..+|+++|++|+|||||+++|+........ ..+ +.......+... .+.+++|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC-----DPT--------------IEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----CTT--------------CCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc-----CCc--------------cceEEEEEEEECCEEEEEEEEECCCchh
Confidence 358999999999999999999743211000 000 000111122223 35689999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99888999999999999999986433222 223333332 3799999999999865
No 122
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=159.33 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 99 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~ 99 (711)
+..+..+|+++|.+|+|||||+++|+......... .+ .+.+. .....+......++||||||+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 82 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-----PT-----------VENTY-SKIVTLGKDEFHLHLVDTAGQ 82 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-----CC-----------SEEEE-EEEEC----CEEEEEEEECCC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-----Cc-----------cceEE-EEEEEECCEEEEEEEEECCCc
Confidence 44567899999999999999999998422211000 00 01111 222333345678999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHH----hcCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~----~~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++++|+|+++....... .++..+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 99988888899999999999999864333222 2233332 24789999999999864
No 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.67 E-value=4e-16 Score=148.46 Aligned_cols=116 Identities=14% Similarity=0.040 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|.+|+|||||+++|+........ .. ..+.........+......+.+|||||+.++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EM--------------ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--cC--------------CCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 568999999999999999999622111100 00 00111122222222234678899999999987
Q ss_pred H-HHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 104 L-EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 ~-~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
. ....+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 6 45566889999999999987432222 233333333 3799999999999863
No 124
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=1.1e-16 Score=154.48 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=73.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+.........+ +. .+ ... ....+......+++|||||+.+|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~-----t~-~~----------~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP-----TV-FD----------NFS-ANVVVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CB-CCCC-------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----ee-ee----------eEE-EEEEECCEEEEEEEEECCCChhh
Confidence 467899999999999999999974321110000 00 00 000 01112223467789999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 88888889999999999999875443332 23334443 27999999999998654
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=6.4e-16 Score=150.03 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+. ....... ..++|+......+.+++..+++|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~---~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG---ENVYIGN---------------WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT---TCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC---CCccccC---------------CCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 458999999999999999999962 1111111 1245666666677788899999999999987
Q ss_pred H------HHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 103 T------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ~------~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
. .....+++ .+|++++|+|++. ......++..+...++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 4 22334444 4899999999975 2334455566677889999999999974
No 126
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.2e-15 Score=149.39 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+........... .+.+.. ....+......++||||||+.+|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----------------~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT----------------IEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC----------------CCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc----------------ccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 4689999999999999999999742211000000 011111 11122223458999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999999999999999999986432221 223333322 3789999999999864
No 127
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.66 E-value=1.8e-15 Score=152.16 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=78.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|.+|+|||||+++|+.. .. .... ..+.|.......+.+++..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~--~~-~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA--NV-DVQS---------------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT--CE-EEEC---------------C-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-ccCC---------------CCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45789999999999999999999621 11 1110 112344444455566788999999999943
Q ss_pred ------h---HHHHHHHHHhcCeEEEEEeCCCCCChh---HHHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 102 ------F---TLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ------f---~~~~~~~l~~~D~~llvvda~~g~~~~---t~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
. ...+......+|++|+|+|+++..... ...++..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 1 112233467789999999999765432 23445555554 8999999999998653
No 128
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=3.9e-16 Score=150.93 Aligned_cols=116 Identities=15% Similarity=0.025 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+++|+.......... +. +.+. .....+......+++|||||+.+|.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~------t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP------TV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC------CS----------CCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC------cc----------ccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 57899999999999999999974321100000 00 0011 1111222234577899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 104 LEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 104 ~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
..+..+++.+|++++|+|++++...... .++..+... ++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 7777888999999999999875443333 233444443 8999999999998654
No 129
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.66 E-value=3.4e-16 Score=154.65 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe--cCeeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~i~liDtPG~ 99 (711)
.+..+|+++|.+|+|||||+++|+.......... .+.......+.. ....+++|||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-------------------t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-------------------TVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC-------------------CSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC-------------------eecceeEEEEEECCEEEEEEEEECCCc
Confidence 4468999999999999999999984322111000 011111112222 3456779999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
.+|......+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 99988888899999999999999976544443 233444444 8999999999998754
No 130
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=155.08 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=78.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|.+|+|||||+++|+....... ....++.......+..++ ..++||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD------------------SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc------------------CCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 4578999999999999999999972211000 001112122222333344 78999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 98877788899999999999999875433322 23333332 4789999999999853
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=1.8e-15 Score=167.45 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|++|+|||||+|+|+ |........ ..|+|.+.....+.+++..+++|||||+..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~---g~~~~~v~~--------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL---NKERALVSP--------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH---TSTTEEECC--------------CC------CCEEEEETTEEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHh---CCcccccCC--------------CCCCcCCceEEEEEECCEEEEEEECCCCccc
Confidence 46899999999999999999996 322111111 1245666666778888999999999998543
Q ss_pred HH------------HHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 103 TL------------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~------------~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.. ....+++.+|++++|+|++.+...+...++..+...++|+++|+||+|+...
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 22 2356788999999999999998888877778888889999999999998653
No 132
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.65 E-value=1.3e-15 Score=152.00 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|..|+|||||+++++....... +.+ .-|................++||||+|+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~-------------~~~---Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT-------------YQA---TIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCC-------------cCC---ccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 3456899999999999999999973221100 000 011122222222222346789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHH---hcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++++|+|.+....... ..++..+. ..++|+++|.||+|+..
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 99999999999999999999986443322 23333332 35789999999999854
No 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=9.7e-16 Score=156.28 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=89.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC--
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH-- 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~-- 99 (711)
....+|+++|++|+|||||+|+|+.......... ..|.|.......+.+++..++||||||+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~----------------~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG----------------ATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCC----------------CCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 3468999999999999999999973322111100 1234666666777889999999999998
Q ss_pred ------CchHHHHHHHH----HhcCeEEEEEeCCCCCChhHHHHHHHHHhc------CCCeEEEEeccCcCCccHH
Q 005154 100 ------VDFTLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY------GVPRICFVNKMDRLGANFF 159 (711)
Q Consensus 100 ------~df~~~~~~~l----~~~D~~llvvda~~g~~~~t~~~~~~~~~~------~ip~ivviNK~D~~~~~~~ 159 (711)
.+|..++.+++ +.+|++|+|+|++. .......+++.+.+. +.|+++|.||+|+...++.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 157 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH 157 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH
Confidence 56677777776 88999999999985 666666666666653 7899999999999775543
No 134
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.65 E-value=2.1e-15 Score=146.67 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|.+|+|||||+++|+....... ..++ +.......+.+++ +.++||||||+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-----YDPT--------------IEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSC-----CCTT--------------CCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccc-----cCCc--------------cceEEEEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999974321100 0000 0011112233333 5699999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
|...+..+++.+|++++|+|+.+....... .++..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 988889999999999999999875433322 22233322 4799999999999865
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.1e-16 Score=156.30 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=78.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+......... ...|.+.. ...+.+++ ..++||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----------------~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK----------------STIGVEFA--TRTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEE--EEEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------------CcccceeE--EEEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999997432211000 00122222 22334444 68999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
.+|...+..+++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99988888889999999999999875443332 23334433 3789999999999854
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=2.7e-15 Score=145.68 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=76.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
+..+..+|+++|.+|+|||||+++++..... . +..+ |.......+.+++ ..+++||||
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~-----------~~~~-------t~~~~~~~~~~~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYV--Q-----------EESP-------EGGRFKKEIVVDGQSYLLLIRDEG 75 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC--C-----------CCCT-------TCEEEEEEEEETTEEEEEEEEECS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CcCC-------CcceEEEEEEECCEEEEEEEEECC
Confidence 3455789999999999999999999732211 0 0000 1111112333444 577889999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
|+.+|. +++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+..
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999986 7889999999999997554444 334444443 4789999999999853
No 137
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=151.01 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=77.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 97 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtP 97 (711)
...+..+|+++|++|+|||||+++|+... ... . ...+ +.......+.+++ ..+.+||||
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~--~-~~~t--------------~~~~~~~~~~~~~~~~~~~i~Dt~ 76 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT--E-YIPT--------------AFDNFSAVVSVDGRPVRLQLCDTA 76 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------CC--------------SSEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCC--C-CCCc--------------ccceeEEEEEECCEEEEEEEEECC
Confidence 34557899999999999999999997221 100 0 0000 1111112233444 577899999
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
|+.+|...+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+...
T Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp CSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred CCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 9999877777788999999999999875443332 23333433 38999999999998653
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=9.9e-16 Score=149.75 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=79.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|.+|+|||||+++|+.......... +. +.+.. ....+....+.+++|||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~-----t~-----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP-----TV-----------FENFS-HVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC-----CS-----------EEEEE-EEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCC-----ee-----------eeeeE-EEEEECCEEEEEEEEECCCcHH
Confidence 4468999999999999999999974321100000 00 11111 1111222335679999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ..+...+... ++|+++|+||+|+...
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 98888889999999999999987544333 2233333333 6899999999998753
No 139
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.64 E-value=5.4e-16 Score=153.87 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+++|+......... .+ . +... .....+......++||||||+.+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~-----~t-~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PT-V----------FDNF-SANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-----CS-S----------CCCE-EEEEECSSCEEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCC-----Cc-c----------ceeE-EEEEEECCEEEEEEEEECCCcHHH
Confidence 46899999999999999999997322110000 00 0 1111 111112223368999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 88888889999999999999875433332 233444443 8999999999998653
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=4.1e-16 Score=173.44 Aligned_cols=116 Identities=25% Similarity=0.333 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC----
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG---- 98 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG---- 98 (711)
+.++|+|+|++|+|||||+|+|+ +.. .. ......|+|.......+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~---~~~--~~------------~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~ 84 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIA---GER--IS------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 84 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHE---EEE--EC-----------------------CEEEECTTCSSCCEEECCCC----
T ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCC--Cc------------ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc
Confidence 46899999999999999999995 210 00 1122347788888888888899999999999
Q ss_pred ----CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 99 ----HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ----~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+..+...+..+++.+|++|+|+|+..+.......+++.+.+.++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp --CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 556777788899999999999999999999999999999999999999999999753
No 141
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3.3e-15 Score=146.29 Aligned_cols=116 Identities=20% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|++|+|||||+++|+........ ..+ .+... .....+......+.+|||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----DPT-----------LESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----CCC-----------CCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 45689999999999999999999743211000 000 01111 11122222346799999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
...+...++.+|++++|+|+++..... ...++..+ ...++|+++|+||+|+..
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 677788999999999999998633221 12222222 235899999999999854
No 142
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.63 E-value=6.9e-16 Score=171.32 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=69.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
..+|+++|++|+|||||+|+|+..... ......|+|.+.....+.++++.++||||||+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a-----------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA-----------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-----------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 356999999999999999999632110 011123557777677778899999999999998875
Q ss_pred HHH--------HHHHHhcCeEEEEEeCCCCCCh----hHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 104 LEV--------ERALRVLDGAICLFDSVAGVEP----QSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 104 ~~~--------~~~l~~~D~~llvvda~~g~~~----~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
..+ ..+++.+|++|+|+|++++... ....++..+. ++|+++|+||+|+....
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 443 2356789999999999998776 3444444333 78999999999987643
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=150.44 Aligned_cols=116 Identities=14% Similarity=0.006 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG~ 99 (711)
.+..+|+++|.+|+|||||+++|+... ... . ...+ +.......+..+ ...++||||||+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~--~-~~~t--------------~~~~~~~~~~~~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA--FPE--S-YTPT--------------VFERYMVNLQVKGKPVHLHIWDTAGQ 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC------------CCC--------------CCEEEEEEEEETTEEEEEEEEEC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC--CCC--C-CCCc--------------cceeEEEEEEECCEEEEEEEEECCCc
Confidence 456899999999999999999997211 100 0 0000 001111122233 357999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
.+|...+..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+...
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 99988888899999999999999875433332 23333333 37999999999998754
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=1.7e-15 Score=170.61 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|.+|+|||||+++|+.... .. . ..|+......+.+++..++||||||+.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~--~-----------------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS--VT--T-----------------IPTVGFNVETVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC--CC--C-----------------CCCSSEEEEEEESSSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC--CC--c-----------------CCccceeEEEEEeCCEEEEEEECCCcHH
Confidence 3457999999999999999999973221 00 0 0144444556777889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 988888899999999999999976443332 23333322 48999999999998654
No 145
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.63 E-value=1e-15 Score=150.70 Aligned_cols=117 Identities=16% Similarity=0.030 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
...+|+++|.+|+|||||+++|+......... .+. +.+.. ....+......++||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~t~-----------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-----PTV-----------FENYI-ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC-----CSS-----------CCCCE-EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccC-----Ccc-----------cceEE-EEEEECCEEEEEEEEECCCchhH
Confidence 35799999999999999999997432211000 000 11111 11122122358999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
...+..+++.+|++++|+|+++...... ..+...+... ++|+++|+||+|+...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 8888888999999999999986433222 2333444443 8999999999998764
No 146
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.63 E-value=2.6e-16 Score=156.90 Aligned_cols=116 Identities=23% Similarity=0.188 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-C--eeEEEEeCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-K--HRINIIDTPG 98 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~--~~i~liDtPG 98 (711)
+...+|+++|.+|+|||||+++|+. +....... . ..+.+... ..+... + ..++||||||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~~--~------------t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G 70 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD--GRFEKNYN--A------------TVGAVNHP--VTFLDDQGNVIKFNVWDTAG 70 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT--CSTTCEEE--T------------TTTEEEEE--EEEEBTTSCEEEEEEEEECS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc--CCCCCCCC--C------------ccceeeEE--EEEEeCCCcEEEEEEEecCC
Confidence 4468999999999999999999962 11111000 0 01111111 111111 1 6799999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHH-HHHHH---hcCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD---KYGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~-~~~~~---~~~ip~ivviNK~D~~~ 155 (711)
+.+|.......++.+|++|+|+|++++...+.... +..+. ..++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred chhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99988788888999999999999997654443322 23332 34789999999999864
No 147
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.1e-15 Score=151.15 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=77.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|.+|+|||||+++|+.......... + .+.+.. ..+..++ ..+.||||||+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-----t-----------~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP-----T-----------VFENYV---ADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEE---EEEEETTEEEEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCC-----c-----------ccceEE---EEEEECCEEEEEEEEECCCcHH
Confidence 47999999999999999999974222110000 0 011111 1123333 6899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp CTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 98777888899999999999986433222 2333444443 8999999999998654
No 148
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=5e-15 Score=145.25 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=75.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec--CeeEEEEeCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPG 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~i~liDtPG 98 (711)
.+...+|+++|.+|+|||||+++|+...+.... ..+++.......+.++ ...+.+|||||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g 81 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH------------------EPENPEDTYERRIMVDKEEVTLVVYDIWE 81 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG------------------TTTSCTTEEEEEEEETTEEEEEEEECCCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC------------------CCCcccceEEEEEEECCEEEEEEEEecCC
Confidence 345789999999999999999999421111100 0011111111222333 35788999999
Q ss_pred CCchHH-HHHHHHHhcCeEEEEEeCCCCCChh-HHHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 99 HVDFTL-EVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~-~~~~~l~~~D~~llvvda~~g~~~~-t~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
+.++.. ....+++.+|++|+|+|+++..... ...++..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 998765 5566788999999999998643222 2233333333 4799999999999864
No 149
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=3.5e-16 Score=167.18 Aligned_cols=239 Identities=15% Similarity=0.094 Sum_probs=142.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCc------cccchhhhh----hcCceeeeeeE-----
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA------TMDWMEQEQ----ERGITITSAAT----- 82 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~------~~d~~~~e~----~~giti~~~~~----- 82 (711)
..+...|+++|++|+|||||++.|.... +........+.+++ ..|....+. .+++ +.+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~-i~~~~~~~~l~ 131 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAF-IRPVPSSGHLG 131 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEE-EEEECC-----
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCce-eecCccccccc
Confidence 3557899999999999999999996432 22212222233222 222211111 1111 111000
Q ss_pred -----------EEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEecc
Q 005154 83 -----------TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 83 -----------~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~ 151 (711)
.+.+.++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~ 204 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKD 204 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCC
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECC
Confidence 11256889999999999887654 4689999999999986643222111 11357899999999
Q ss_pred CcCCc-cHHHHHHHHHHHhCC-c-----ceEEEeccC--CCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHH
Q 005154 152 DRLGA-NFFRTRDMIVTNLGA-K-----PLVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMA 222 (711)
Q Consensus 152 D~~~~-~~~~~~~~l~~~l~~-~-----~~~~~~p~~--~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 222 (711)
|+... +....++++++.++. . ..+..+|++ .+..+.++++.+......|.. + ..+|+ ...
T Consensus 205 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~---~-----~~~~~---~r~ 273 (341)
T 2p67_A 205 DGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA---S-----GRLQQ---VRQ 273 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH---T-----THHHH---HHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh---C-----ChHHH---HHH
Confidence 99764 345555566654321 1 123345654 566777777776554433321 1 12222 122
Q ss_pred HHHHHHHHHHHhccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeeeeccccCCCChHHHHHHHHH
Q 005154 223 QEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD 291 (711)
Q Consensus 223 ~~~r~~l~e~l~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~ 291 (711)
.+.+..+.|.+ ++.++++|+++ ++.+++.+.+++.+..+.+.|+++. +.|++.+..
T Consensus 274 ~~~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 274 QQSVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 33555666664 88999999995 7888999999999999999999865 567776654
No 150
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=146.33 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|.+|+|||||+++|+...... .. ..+ .+.+. .....+......+.||||||+.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~----~~-~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS----EY-DPN-----------LEDTY-SSEETVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS----CC-CTT-----------CCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc----cc-CCC-----------cccee-eEEEEECCEEEEEEEEECCCCC
Confidence 3456899999999999999999998432110 00 000 01111 1112222234678999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh------cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~------~~ip~ivviNK~D~~~ 155 (711)
+|.. +..+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 81 TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp -CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 8765 36788999999999999864333222 23333332 4899999999999854
No 151
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.62 E-value=1e-15 Score=152.55 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=80.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|.+|+|||||+++|+.......... + . +.+. .....+......++||||||+.
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~-----t-~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP-----T-V----------FENY-TACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC-----C-S----------EEEE-EEEEEC--CEEEEEEEEECCSG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCC-----e-e----------eeeE-EEEEEECCEEEEEEEEECCCCH
Confidence 34568999999999999999999974321110000 0 0 1111 1122233345789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhH--HHHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
+|...+..+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 998888888999999999999997544333 2333444443 7899999999998653
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=2.3e-15 Score=156.00 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|++|+|||||+|+|+...... ... ++. ......++++......+.+++ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~---~~~-~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYS---PEY-PGP------SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-------------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccc---cCC-CCc------ccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 5799999999999999999995211111 000 000 001123344444555555555 4899999999854
Q ss_pred h-------HHHH-------HHHHHh-------------cCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 102 F-------TLEV-------ERALRV-------------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 102 f-------~~~~-------~~~l~~-------------~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
+ ...+ ..+++. +|+++++++++ .+.......+++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 2222 444554 67888888665 5888888888888877 8999999999999
Q ss_pred CCcc-HHHHHHHHHHHh---CCcceEEEec----------------------cCCCCCceeeeecccceEEeecCcCCCc
Q 005154 154 LGAN-FFRTRDMIVTNL---GAKPLVVQLP----------------------VGAEDNFKGVVDLVKMKAIIWSGEELGA 207 (711)
Q Consensus 154 ~~~~-~~~~~~~l~~~l---~~~~~~~~~p----------------------~~~~~~~~g~vd~~~~~~~~~~~~~~g~ 207 (711)
...+ .....+.+.+.+ +.... .+| ++.+..+....+.+..+.|.|+
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~--~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg------ 228 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIY--EFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG------ 228 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCC--CC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEE--cCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc------
Confidence 7533 334444555444 33222 122 1222222222233344444442
Q ss_pred eeeeecccHhHHHHHHHHHHHHH-----HHHhccCHHHHHHH
Q 005154 208 KFAYEDIPANLQKMAQEYRSQMI-----ETIVELDDEAMESY 244 (711)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~r~~l~-----e~l~~~~d~l~e~~ 244 (711)
..++++.....+..+|+.|+ +.....++.++|+|
T Consensus 229 ---~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 229 ---VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp ---EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred ---eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444455667777766 77777788888888
No 153
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.61 E-value=2.3e-15 Score=167.24 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC-chH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-DFT 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~-df~ 103 (711)
.+|+|+|.+|+|||||+|+|+.....+ .... .|.|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~---vs~~--------------~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI---VTDI--------------PGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC---CCCS--------------SCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc---cCCC--------------CCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 689999999999999999998543211 1111 2345555566677788999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 104 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 104 --------~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..+..+++.+|++|+|+|++++...+...+++.+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3456789999999999999988777777777655 4789999999999864
No 154
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.61 E-value=4.2e-16 Score=153.66 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec----CeeEEEEeCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTPG 98 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~----~~~i~liDtPG 98 (711)
+..+|+++|++|+|||||+++|+........ .. ..+ .| .......+.++ ...++||||||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~-~~t-----------~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G 82 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK--DY-AMT-----------SG--VEVVVAPVTIPDTTVSVELFLLDTAG 82 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC--CC-CCc-----------cc--eEEEEEEEEECCcccEEEEEEEECCC
Confidence 4579999999999999999999732101100 00 000 01 11222334444 46899999999
Q ss_pred CCchHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh------cCCCeEEEEeccCcCC
Q 005154 99 HVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 155 (711)
Q Consensus 99 ~~df~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~------~~ip~ivviNK~D~~~ 155 (711)
+.+|...+..+++.+|++|+|+|++++..... ..++..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 83 SDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp THHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred cHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99998888888999999999999987644332 233344443 4789999999999864
No 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.60 E-value=8.7e-17 Score=158.12 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
++..+|+++|++|+|||||+++|+. +.. ..+...+++.......+.+++ ..++||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD--DTY----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC--CCC----------------CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc--CCC----------------CCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4578999999999999999999951 100 001111223333333444444 68999999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHhc---CCCeEEEEeccCcCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLGA 156 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~~---~ip~ivviNK~D~~~~ 156 (711)
.+|...+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 99888788889999999999999975543333 333334332 7899999999998643
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.59 E-value=6.2e-15 Score=143.05 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCC-----
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----- 99 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~----- 99 (711)
.+|+++|++|+|||||+++|+... . ... ...|+|....... +. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~-~~~---------------~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--V-RRG---------------KRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--C-SSS---------------SSTTCTTSCEEEE--ET--TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--C-ccC---------------CCCCccceeEEEe--cC--CEEEEECCCcccccc
Confidence 589999999999999999997221 1 000 0113333332222 22 7899999994
Q ss_pred ------CchHHHHHHHHHh----cCeEEEEEeCCCC-----------CChhHHHHHHHHHhcCCCeEEEEeccCcCCccH
Q 005154 100 ------VDFTLEVERALRV----LDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGANF 158 (711)
Q Consensus 100 ------~df~~~~~~~l~~----~D~~llvvda~~g-----------~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~~ 158 (711)
..|...+..+++. +++++.|+|+... ...++..+...+...++|+++|+||+|+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 138 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV- 138 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-
Confidence 4455555555554 4677777776531 11223344555666789999999999997654
Q ss_pred HHHHHHHHHHh
Q 005154 159 FRTRDMIVTNL 169 (711)
Q Consensus 159 ~~~~~~l~~~l 169 (711)
.+..+++.+.+
T Consensus 139 ~~~~~~~~~~~ 149 (190)
T 2cxx_A 139 QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33344444433
No 157
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=7.1e-15 Score=154.03 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=90.2
Q ss_pred hccccccCCCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeecC-------------------CCccccchh-
Q 005154 11 RHYESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHE-------------------GTATMDWME- 68 (711)
Q Consensus 11 ~~~~~~~~~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~~-------------------g~~~~d~~~- 68 (711)
...+.....+....++|+++|.+|+|||||+|+|+........ ..+..+ |..+++...
T Consensus 13 ~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~ 92 (299)
T 2aka_B 13 DAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEV 92 (299)
T ss_dssp HHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHH
T ss_pred HHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHH
Confidence 3333333334456789999999999999999999743321000 000001 111122111
Q ss_pred ---hh----h----hcCceeeeeeEEEEec-CeeEEEEeCCCCC-------------chHHHHHHHHHhcCeEE-EEEeC
Q 005154 69 ---QE----Q----ERGITITSAATTTYWN-KHRINIIDTPGHV-------------DFTLEVERALRVLDGAI-CLFDS 122 (711)
Q Consensus 69 ---~e----~----~~giti~~~~~~~~~~-~~~i~liDtPG~~-------------df~~~~~~~l~~~D~~l-lvvda 122 (711)
.+ + ..|++.......+... ...++||||||+. .+...+..+++.+|.++ +|+|+
T Consensus 93 ~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~ 172 (299)
T 2aka_B 93 RLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 172 (299)
T ss_dssp HHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred HHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 00 0 1334333322333332 4789999999974 34556777888888777 69999
Q ss_pred CCCCChhHH-HHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 123 VAGVEPQSE-TVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 123 ~~g~~~~t~-~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
+.+...+.. .+++.+...+.|+++|+||+|+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 173 NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp SSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred CcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCC
Confidence 988777664 4667777778999999999998753
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.59 E-value=1.8e-14 Score=138.46 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|.+|+|||||+++|+..... . ..+ +. +.+. .....+......+++|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~--~---~~~--t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ--V---LEK--TE----------SEQY-KKEMLVDGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCC--C---CSS--CS----------SSEE-EEEEEETTEEEEEEEEECSSSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--C---cCC--Cc----------ceeE-EEEEEECCEEEEEEEEECCCCch-
Confidence 3578999999999999999999742211 1 000 00 1111 11112211235789999999987
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH-HHHH---h---cCCCeEEEEeccCcC
Q 005154 103 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---K---YGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~-~~~~---~---~~ip~ivviNK~D~~ 154 (711)
..+++.+|++++|+|+++.........| ..+. . .++|+++|+||+|+.
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3578899999999999875443333322 1222 2 378999999999985
No 159
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=7e-15 Score=155.37 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=56.1
Q ss_pred cCeeEEEEeCCCCCc-------------hHHHHHHHHHhcCeEEEEEeC-CCCCChhH-HHHHHHHHhcCCCeEEEEecc
Q 005154 87 NKHRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDS-VAGVEPQS-ETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 87 ~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~~llvvda-~~g~~~~t-~~~~~~~~~~~ip~ivviNK~ 151 (711)
.+..++||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 566778899999999999997 55555444 467777777899999999999
Q ss_pred CcCCc
Q 005154 152 DRLGA 156 (711)
Q Consensus 152 D~~~~ 156 (711)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98754
No 160
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.58 E-value=3.5e-15 Score=144.62 Aligned_cols=117 Identities=13% Similarity=-0.031 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
++..+|+++|++|+|||||+++|+.......... +. +... .....+......+.+|||||+.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-----t~-----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP-----TV-----------FENY-TASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-----CS-----------EEEE-EEEEECSSCEEEEEEEEECCSGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----cc-----------ceeE-EEEEEECCEEEEEEEEECCCChh
Confidence 4468999999999999999999974321100000 00 0011 11111222346899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
|......+++.+|++|+|+|+++....... .+...+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 887777788999999999999875433322 22233333 4789999999999864
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.58 E-value=1.7e-15 Score=167.48 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 104 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~ 104 (711)
.+|+++|++|+|||||+|+|+.....+. .. . .|+|.+.....+.+++..++||||||+.++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v--~~-~--------------~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV--TD-L--------------PGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC--SC-C--------------TTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc--cC-C--------------CCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 5799999999999999999985432211 00 1 13344444445566889999999999987654
Q ss_pred HHHH--------HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc
Q 005154 105 EVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 105 ~~~~--------~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~ 157 (711)
.+.. .++.+|++|+|+|++++...+...++..+.. .|+++|+||+|+....
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGG
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcch
Confidence 4333 4677899999999999888888777776653 7999999999987643
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.56 E-value=4e-15 Score=147.27 Aligned_cols=118 Identities=13% Similarity=-0.035 Sum_probs=77.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
.++..+|+++|.+|+|||||+++|+.......... +. +.+. .....+......++||||||+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-----t~-----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP-----TV-----------FENY-TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-----CS-----------EEEE-EEEEESSSSEEEEEEEEECCSG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-----cc-----------ceeE-EEEEEECCEEEEEEEEeCCCcH
Confidence 34578999999999999999999974321100000 00 0011 0111112234689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHh--cCCCeEEEEeccCcCC
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~--~~ip~ivviNK~D~~~ 155 (711)
+|......+++.+|++|+|+|+++....... .+...+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 88 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 9887777788999999999999875433322 22233433 3789999999999864
No 163
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=153.76 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
.+..+.++|+++|++|+|||||+++|+..... .. .....++|.......+.+.+..++||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~--~~--------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG 87 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVF--HS--------------GTAAKSITKKCEKRSSSWKETELVVVDTPG 87 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCS--CC---------------------CCSCEEEEEEETTEEEEEEECCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcC--cc--------------CCCCCceeeeEEEEEEEeCCceEEEEECCC
Confidence 34456799999999999999999999722110 00 011124566666677788999999999999
Q ss_pred CCch-------HHHHHHH----HHhcCeEEEEEeCCCCCChhHHHHHHHHH-----hcCCCeEEEEeccCcCCcc-HH--
Q 005154 99 HVDF-------TLEVERA----LRVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLGAN-FF-- 159 (711)
Q Consensus 99 ~~df-------~~~~~~~----l~~~D~~llvvda~~g~~~~t~~~~~~~~-----~~~ip~ivviNK~D~~~~~-~~-- 159 (711)
+.+. ..++.+. .+.+|++|+|+|++.. .......+..+. ....|+++|+||+|+.... +.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 166 (239)
T 3lxx_A 88 IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY 166 (239)
T ss_dssp CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH
Confidence 7753 2233333 3446999999999743 334343333332 2456999999999987543 22
Q ss_pred -----HHHHHHHHHhCCcc
Q 005154 160 -----RTRDMIVTNLGAKP 173 (711)
Q Consensus 160 -----~~~~~l~~~l~~~~ 173 (711)
+.++++.+.++...
T Consensus 167 i~~~~~~l~~l~~~~~~~~ 185 (239)
T 3lxx_A 167 LREAPEDIQDLMDIFGDRY 185 (239)
T ss_dssp ----CHHHHHHHHHHSSSE
T ss_pred HHhchHHHHHHHHHcCCEE
Confidence 24555666666543
No 164
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.56 E-value=3.9e-14 Score=149.15 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEe-cCeeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~i~liDtPG~~df 102 (711)
..+|+++|.+|+|||||+++|+...... .....|.|+......+.+ ++..+++|||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-----------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-----------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-----------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------cccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4789999999999999999997221110 111234466666666654 5789999999999998
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH----HHHHh--cCCCeEEEEeccCcCCc
Q 005154 103 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 -----~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~----~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
...+...++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 44566778899999999999987654444333 22222 38999999999998763
No 165
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.56 E-value=4.9e-15 Score=157.59 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCc-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~d- 101 (711)
+.+|+++|.+|+|||||+++|+... .... + ....|.......+.+.+ ..++||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~---~~i~---------~------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK---PKIA---------D------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC---CEES---------S------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC---Cccc---------c------CCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 4579999999999999999995211 1110 0 01224444555566664 7899999999653
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCC--CC--hhHHHHHHHHHh-----cCCCeEEEEeccCcCC
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAG--VE--PQSETVWRQADK-----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g--~~--~~t~~~~~~~~~-----~~ip~ivviNK~D~~~ 155 (711)
+.....+.+..+|++|+|+|++.. .. .....++..+.. .++|+++|+||+|+..
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 445666777889999999999862 12 222344445554 3789999999999865
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4e-16 Score=153.94 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+..+|+++|.+|+|||||+++|+...-...... +..+ .. .....+......+++|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~------t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP------TVFD----------NY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4568999999999999999999973221000000 0000 00 11112222446778999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
|...+..+++.+|++++|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 998888899999999999999876544333 233344433 7999999999998653
No 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=1.8e-13 Score=147.27 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|.+|+|||||+++|+ +.....+.. .+.|.......+...+..+.+|||||+.++
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~---~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT---TAKPEIASY---------------PFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC---SSCCEEECC---------------TTCSSCEEEEEEEETTEEEEEEECTTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCccCCC---------------CCeeeceeEEEEEecCceEEEEeCCCcccc
Confidence 46899999999999999999995 322111111 122334444455667889999999998764
Q ss_pred H--------HHHHHHH-HhcCeEEEEEeCCCCC--ChhH-HHHHHHHHh-c-CCCeEEEEeccCcCCc
Q 005154 103 T--------LEVERAL-RVLDGAICLFDSVAGV--EPQS-ETVWRQADK-Y-GVPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~--------~~~~~~l-~~~D~~llvvda~~g~--~~~t-~~~~~~~~~-~-~ip~ivviNK~D~~~~ 156 (711)
. .....++ ..+|++++|+|++.+. .... ..++..+.. . ++|+++|+||+|+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 228 PISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp CSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred chhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 2 1222223 3589999999987643 3332 334444433 2 8999999999998653
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.52 E-value=8.3e-14 Score=149.61 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
..+.|+|+|++|+|||||+|+|+ +..... +...+.|.+.....+.+++..+.++||||+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~---~~~~~~---------------~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLT---GLTQKV---------------DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH---CC--------------------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHH---CCCccc---------------cCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 46679999999999999999996 221110 111234555556667778899999999997431
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCC--C-hhHHHHHHHHHh---cCCCeEEEEeccCcCCcc
Q 005154 103 --------TLEVERALRVLDGAICLFDSVAGV--E-PQSETVWRQADK---YGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 103 --------~~~~~~~l~~~D~~llvvda~~g~--~-~~t~~~~~~~~~---~~ip~ivviNK~D~~~~~ 157 (711)
...+...+..+|++++|+|++++. . .+...+...+.. .++|+++|.||+|+....
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 122344578899999999998764 1 222222233333 578999999999987543
No 169
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.52 E-value=3.4e-14 Score=150.82 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
+..+|+++|.+|+|||||+++++......... +.+.......+..++ ..+++|||||+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------------------PTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC-------------------CCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccC-------------------CcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 35899999999999999999997432110000 011111122233344 456699999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCChhHH--HHHHHHHhc--CCCeEEEEeccCcCCc
Q 005154 101 DFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 156 (711)
Q Consensus 101 df~~~~~~~l~~~D~~llvvda~~g~~~~t~--~~~~~~~~~--~ip~ivviNK~D~~~~ 156 (711)
+|......+++.+|++++|+|+++....... .+...+... ++|+++|+||+|+...
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 9988888889999999999999875543332 233344433 8999999999998653
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=1.2e-13 Score=137.42 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.+.++|+++|++|+|||||+++|+....... .... ..++.. .+....+++|||||+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~----------------~~~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQ----------------EPLSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCS----------------SCEEET-----TGGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeec----------------CceEEE-----EeeCceEEEEECCCcHH
Confidence 4578999999999999999999974321110 0000 001111 11457899999999999
Q ss_pred hHHHHHHHHHh----cCeEEEEEeCC-C--CCChhHHHHHHHHH------hcCCCeEEEEeccCcCCcc
Q 005154 102 FTLEVERALRV----LDGAICLFDSV-A--GVEPQSETVWRQAD------KYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 102 f~~~~~~~l~~----~D~~llvvda~-~--g~~~~t~~~~~~~~------~~~ip~ivviNK~D~~~~~ 157 (711)
|...+..+++. +|++|+|+|++ . ........+...+. ..++|+++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 98888888887 89999999998 2 22222222222221 1589999999999998754
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.50 E-value=3.2e-14 Score=161.42 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeee------eEEE--EecCeeEE
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA------ATTT--YWNKHRIN 92 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~------~~~~--~~~~~~i~ 92 (711)
+.+..+|+++|.+|+|||||+++|+......... ...|.++... ...+ ...+..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~----------------~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES----------------QTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------------CccceEEEEeccccccceeecCCCceEEEE
Confidence 3457899999999999999999997221100000 0011122111 0000 11357899
Q ss_pred EEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcC--CCeEEEEeccCcCCc
Q 005154 93 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLGA 156 (711)
Q Consensus 93 liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~--ip~ivviNK~D~~~~ 156 (711)
+|||||+..|.......++.+|++|+|+|++.. .....++..+...+ +|+++|+||+|+...
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 999999999988888889999999999999865 34455666666644 999999999998653
No 172
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.48 E-value=6.2e-14 Score=135.89 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEE---EecCeeEEEEeCCCCCc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPGHVD 101 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~---~~~~~~i~liDtPG~~d 101 (711)
.+|+++|.+|+|||||+++|+...... .+.. ....|+.+......+ ......+.+|||||+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~--~~~~------------~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD--LGMQ------------SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc--CCCc------------ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 579999999999999999996210000 0000 000122221111111 11456899999999988
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCC-h-hHHHHHHHHHh--cCCCeEEEEeccCcCCc
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVE-P-QSETVWRQADK--YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~-~-~t~~~~~~~~~--~~ip~ivviNK~D~~~~ 156 (711)
|......+++.+|++++|+|.+++.. . ....++..+.. .++|+++|.||+|+...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 87777778899999999999987532 1 12233333332 37899999999998653
No 173
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=2.1e-13 Score=135.35 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=71.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~ 99 (711)
....+|+++|.+|+|||||+++++.....+... .+ .-|.+.... .+.+++ ..+.+|||+|.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~---~~------------~~g~d~~~~--~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD---CE------------VLGEDTYER--TLMVDGESATIILLDMWEN 97 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC------------------CCTTEEEE--EEEETTEEEEEEEECCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc---CC------------ccceeeEEE--EEEECCeeeEEEEeecCCC
Confidence 446889999999999999999996211111100 00 012222222 223333 46789999998
Q ss_pred Cc-hHHHHHHHHHhcCeEEEEEeCCCCCChhH-HHHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 100 VD-FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~d-f~~~~~~~l~~~D~~llvvda~~g~~~~t-~~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
.. +......+.+.+|++|+|+|.++...... ..++..+.. .++|+++|+||+|+..
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 87 33233334567899999999986432222 223333432 3799999999999853
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=4.5e-13 Score=137.75 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=80.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+|+|+...... . ....+.|.......+.+++..++||||||+.+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--V---------------SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--C---------------CSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--c---------------CCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 46899999999999999999997322110 0 011244666666777889999999999999887
Q ss_pred HHH---HHHHHH------hcCeEEEEEeCCC-CCChhHHHHHHHHHhc-----CCCeEEEEeccCcCC
Q 005154 103 TLE---VERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 155 (711)
Q Consensus 103 ~~~---~~~~l~------~~D~~llvvda~~-g~~~~t~~~~~~~~~~-----~ip~ivviNK~D~~~ 155 (711)
... ..+.++ .+|++++|+|... ........+++.+... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 432 223233 6799999988764 3444444555555442 248999999999853
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.44 E-value=1.9e-13 Score=146.87 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=74.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCccc------cchhhh---hhcCceeeeeeEE------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATM------DWMEQE---QERGITITSAATT------ 83 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~~~------d~~~~e---~~~giti~~~~~~------ 83 (711)
.+.++|+++|++|+|||||+++|.... |........++++... |....+ ...+..+......
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 457899999999999999999997442 3222222333332221 111111 1122222211111
Q ss_pred ----------EEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 84 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 84 ----------~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
+.+.++.+.||||||...- ....+..+|++|+|+|+..+...+... . ....+|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCC
Confidence 1235789999999996652 334468999999999998665443221 1 1134699999999998
Q ss_pred CC
Q 005154 154 LG 155 (711)
Q Consensus 154 ~~ 155 (711)
..
T Consensus 230 ~~ 231 (355)
T 3p32_A 230 EH 231 (355)
T ss_dssp GG
T ss_pred cC
Confidence 64
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.44 E-value=8.3e-13 Score=128.98 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=70.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 100 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~ 100 (711)
...+|+++|.+|+|||||+++++.......... + .-|.+.... .+.+++ ..+.+|||+|..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~---~------------~~~~~~~~~--~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX---E------------VLGEDTYER--TLMVDGESATIILLDMWENK 67 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------G------------GGCTTEEEE--EEEETTEEEEEEEECCCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc---c------------ccceeEEEE--EEEECCeEEEEEEEEeccCc
Confidence 357899999999999999999974332211100 0 012222222 223344 466789999976
Q ss_pred c-hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh----cCCCeEEEEeccCcCC
Q 005154 101 D-FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 155 (711)
Q Consensus 101 d-f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~----~~ip~ivviNK~D~~~ 155 (711)
. +......+++.+|++++|+|.++....... .++..+.. .++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp ---CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred chhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 5 222234567889999999999864332222 23333332 3789999999999753
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.44 E-value=5.9e-13 Score=130.61 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG~~d 101 (711)
..+|+++|+.|+|||||+++|+........ ...++.......+.+++ ..+.+|||||+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 578999999999999999999732211000 00111222223344444 4678899999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 102 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 102 f~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
|...+...++.+|++++|+|.......... .++..+.. .+.|+++++||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 876677788899999999999865433322 23333332 4688999999999853
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.6e-13 Score=133.69 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 100 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~ 100 (711)
..+..+|+++|++|+|||||+++|+...... ...... .+++ ..+.+..+++|||||+.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~~--------------~~~~-------~~~~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE--------------PLSA-------ADYDGSGVTLVDFPGHV 102 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCCCTTCSEEEETTCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccCC--------------Ccee-------eeecCCeEEEEECCCCc
Confidence 3456899999999999999999997432111 000000 0111 11256789999999999
Q ss_pred chHHHHHHHHHh----cCeEEEEEeCCCCCCh--hHHHHHHHHH-------hcCCCeEEEEeccCcCCcc-HHHHHHHHH
Q 005154 101 DFTLEVERALRV----LDGAICLFDSVAGVEP--QSETVWRQAD-------KYGVPRICFVNKMDRLGAN-FFRTRDMIV 166 (711)
Q Consensus 101 df~~~~~~~l~~----~D~~llvvda~~g~~~--~t~~~~~~~~-------~~~ip~ivviNK~D~~~~~-~~~~~~~l~ 166 (711)
+|...+..+++. +|++|+|+|++..... ....++..+. ..++|+++|+||+|+.... ..+..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp BSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 887666666665 8999999999822111 1112222221 1489999999999997644 455555555
Q ss_pred HHh
Q 005154 167 TNL 169 (711)
Q Consensus 167 ~~l 169 (711)
+.+
T Consensus 183 ~~l 185 (193)
T 2ged_A 183 SEI 185 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.43 E-value=7.8e-13 Score=153.81 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=55.0
Q ss_pred eeEEEEeCCCCCc---hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHH-HHHhcCCCeEEEEeccCcCC
Q 005154 89 HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 89 ~~i~liDtPG~~d---f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~-~~~~~~ip~ivviNK~D~~~ 155 (711)
..++||||||+.+ ....+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4699999999765 4456778889999999999999888777776665 45557899999999999864
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.42 E-value=1.3e-12 Score=129.04 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCC
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 98 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG 98 (711)
.+..+..+|+++|++|+|||||+++|+ |.... ..+ ....|.|.... .+.+.+ .+.++||||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~---g~~~~-~~~------------~~~~G~~~~~~--~~~~~~-~~~l~Dt~G 81 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT---NQKSL-ART------------SKTPGRTQLIN--LFEVAD-GKRLVDLPG 81 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC---CC--------------------------CCEE--EEEEET-TEEEEECCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh---CCCcc-ccc------------cCCCccceeeE--EEEecC-CEEEEECcC
Confidence 445567899999999999999999994 32200 000 01123333222 222333 688999999
Q ss_pred CCc----------hHHHHHHHH---HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 99 HVD----------FTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 99 ~~d----------f~~~~~~~l---~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
+.+ |...+...+ +.+|++++++|+..+.......+...+...++|.+++.||+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 864 222223333 4679999999999887766656667777789999999999998653
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.40 E-value=2.1e-12 Score=133.36 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
+..+|+++|++|+|||||+|+|+.... ...+. ..+.|.......+..++..++||||||+.++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~---------------~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV--VSISP---------------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCS---------------SSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--ccccC---------------CCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 368999999999999999999973221 11110 1233444455566778899999999999876
Q ss_pred H---HHHHHHHH------hcCeEEEEEeCCC-CCChhHHHHHHHHHhc-C----CCeEEEEeccCcCCc
Q 005154 103 T---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 156 (711)
Q Consensus 103 ~---~~~~~~l~------~~D~~llvvda~~-g~~~~t~~~~~~~~~~-~----ip~ivviNK~D~~~~ 156 (711)
. ......+. .+|++|+|+|... ........++..+... + .|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3 22333332 6899999988764 3444455566555432 3 689999999998653
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=9.7e-13 Score=141.44 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe--eEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~--~i~liDtPG~~d 101 (711)
..+|+++|++|+|||||+++|+.. +.. ..+. .+....+...++++......+.+.+. .+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~~-~~~~-------~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DLY-PERV-------IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC-----------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CCC-CCCc-------ccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 578999999999999999998521 100 0000 11111112233344333333444443 799999999955
Q ss_pred hHH-------HHH-------HHHHhc-------------CeEEEEEeC-CCCCChhHHHHHHHHHhcCCCeEEEEeccCc
Q 005154 102 FTL-------EVE-------RALRVL-------------DGAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDR 153 (711)
Q Consensus 102 f~~-------~~~-------~~l~~~-------------D~~llvvda-~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~ 153 (711)
+.. .+. .+++.+ |+++++|+. ..+.......++..+ ..++|+|+|+||+|+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADT 186 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCC
Confidence 432 121 445443 357777876 566666665555554 367999999999998
Q ss_pred CCc
Q 005154 154 LGA 156 (711)
Q Consensus 154 ~~~ 156 (711)
...
T Consensus 187 ~~~ 189 (361)
T 2qag_A 187 LTL 189 (361)
T ss_dssp SCH
T ss_pred CCH
Confidence 753
No 183
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.37 E-value=7.2e-13 Score=142.27 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcce--eeeecCC-------------------Cccccchh--hhh------h
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEG-------------------TATMDWME--QEQ------E 72 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~--~~~~~~g-------------------~~~~d~~~--~e~------~ 72 (711)
...+.|+++|.+|+|||||+|+|+........ ..+..++ ...+++.. .+. -
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999632211000 0000111 01122221 111 1
Q ss_pred ----cCceeeeeeEEEEec-CeeEEEEeCCCCCc-------------hHHHHHHHHHhc-CeEEEEEeCCCCCChhHH-H
Q 005154 73 ----RGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVL-DGAICLFDSVAGVEPQSE-T 132 (711)
Q Consensus 73 ----~giti~~~~~~~~~~-~~~i~liDtPG~~d-------------f~~~~~~~l~~~-D~~llvvda~~g~~~~t~-~ 132 (711)
.|+........+... ...++||||||..+ +...+..+++.. |++++|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 344433333333333 57899999999743 334455566555 455667788776666554 3
Q ss_pred HHHHHHhcCCCeEEEEeccCcCCc
Q 005154 133 VWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 133 ~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
+++.+...+.|+++|+||+|+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHhCcCCCceEEEeccccccCc
Confidence 666676778999999999998753
No 184
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.37 E-value=2.4e-12 Score=125.51 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCe--eEEEEeCCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGH 99 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~--~i~liDtPG~ 99 (711)
+...+|+++|+.|+|||||+++|+........ ...++.......+.+++. .+.+|||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEECCCC
Confidence 44689999999999999999999732211000 001122222334444554 5567999999
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHH-HHHHHHHh---cCCCeEEEEeccCcCC
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 155 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~-~~~~~~~~---~~ip~ivviNK~D~~~ 155 (711)
..|...+...++.+|++++|+|.......... .++..+.. .+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 98877777788899999999998764332222 23333332 4678999999999853
No 185
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.37 E-value=9.4e-13 Score=131.30 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee--cCCCccccchhhhhhcCceeeeeeE----EE----------E
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAAT----TT----------Y 85 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~--~~g~~~~d~~~~e~~~giti~~~~~----~~----------~ 85 (711)
.+.++|+++|++|+|||||+++|+.......+.+.+ +.+. ..|....+ ..|+++..... .+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 357899999999999999999998765433233322 2222 12222221 12433211100 11 2
Q ss_pred ecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 86 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 86 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
+.+..+.+|||||+.+..... -...+.+++|+|+..+... .+......++|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 356789999999952211100 0246889999999887532 2233344578999999999974
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=146.97 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=91.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCcc------cc-------ch----hhhhhc-----Ccee
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT------MD-------WM----EQEQER-----GITI 77 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~------~d-------~~----~~e~~~-----giti 77 (711)
+.+..++|+|+|++|+|||||+|+|+.........+. .++++. .+ .. +.+.-+ |...
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 3456789999999999999999999843321001111 111100 00 00 000000 0000
Q ss_pred eeeeEEEEecC---eeEEEEeCCCCCc-----------hHHHHHHHHHhcCeEEEEEeCCC-CCChhHHHHHHHHHhcCC
Q 005154 78 TSAATTTYWNK---HRINIIDTPGHVD-----------FTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGV 142 (711)
Q Consensus 78 ~~~~~~~~~~~---~~i~liDtPG~~d-----------f~~~~~~~l~~~D~~llvvda~~-g~~~~t~~~~~~~~~~~i 142 (711)
......+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|++. +...+...+++.+...+.
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~ 219 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHED 219 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGG
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCC
Confidence 01111122222 4699999999986 77788889999999999999987 577788888888888889
Q ss_pred CeEEEEeccCcCCcc-HHHHHHHH
Q 005154 143 PRICFVNKMDRLGAN-FFRTRDMI 165 (711)
Q Consensus 143 p~ivviNK~D~~~~~-~~~~~~~l 165 (711)
|+++|+||+|+...+ +.+..+.+
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHHh
Confidence 999999999998632 33344444
No 187
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=133.69 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.8
Q ss_pred hcCeEEEEEeCCCC--CChhH-HHHHHHH----HhcCCCeEEEEeccCcCC
Q 005154 112 VLDGAICLFDSVAG--VEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 112 ~~D~~llvvda~~g--~~~~t-~~~~~~~----~~~~ip~ivviNK~D~~~ 155 (711)
.+|++|+|+|+++. ..... ..++..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999875 33222 2223333 235799999999999854
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.1e-11 Score=130.48 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc--
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d-- 101 (711)
..+|+|+|.||+|||||+|+|+ +....+++ ..+.|+......+.+.+.++.|+||||..+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt---~~~~~v~~---------------~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLT---GTESEAAE---------------YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHH---SBCCCGGG---------------TCSSCCCEEEEEEEETTEEEEEEECGGGCCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHh---CCCCcccC---------------CCCceeeeeeEEEEeCCcEEEEEeCCCccCCc
Confidence 4689999999999999999996 32221211 124578888888899999999999999764
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh-----cCCCeEEEEeccCcCCcc----------HHHH
Q 005154 102 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGAN----------FFRT 161 (711)
Q Consensus 102 -----f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~~----------~~~~ 161 (711)
....+...++.+|++++|+|+++++.. ...+...+.. ...|.++++||+|+.+.+ -.+.
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~ee 212 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDE 212 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHH
T ss_pred hhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHH
Confidence 234577889999999999999875432 2222233333 256889999999986422 1234
Q ss_pred HHHHHHHhCCcceEEE
Q 005154 162 RDMIVTNLGAKPLVVQ 177 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~ 177 (711)
+..+...+.....|+.
T Consensus 213 ik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 213 IRAVMSEYRINSAEIA 228 (376)
T ss_dssp HHHHHHHTTCCSEEEE
T ss_pred HHHHHHHhcccCCCee
Confidence 4455555555544443
No 189
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.33 E-value=1.2e-11 Score=129.26 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchHH-
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL- 104 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~~- 104 (711)
+|+++|..|+|||||++++.. +.... .. ...+.|+......+. ....+++|||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~~-~~--------------~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQPL-DT--------------LYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCSG-GG--------------TTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCCC-cc--------------ceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 478999999999999997751 11000 00 001223333333332 347899999999999963
Q ss_pred --HHHHHHHhcCeEEEEEeCCCCCChhHHHHHH----HHH--hcCCCeEEEEeccCcCCcc
Q 005154 105 --EVERALRVLDGAICLFDSVAGVEPQSETVWR----QAD--KYGVPRICFVNKMDRLGAN 157 (711)
Q Consensus 105 --~~~~~l~~~D~~llvvda~~g~~~~t~~~~~----~~~--~~~ip~ivviNK~D~~~~~ 157 (711)
.+..+++.++++|+|+|+++. .......|. .+. ..++|+++|+||+|+...+
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 467889999999999999986 333333332 222 2478999999999997653
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.31 E-value=5.7e-12 Score=145.48 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=84.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceee-------------------ee--cCCCccccchhh--h---------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------------------EV--HEGTATMDWMEQ--E--------- 70 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~-------------------~~--~~g~~~~d~~~~--e--------- 70 (711)
..+.|+++|..++|||||+|+|+...-.....+ .. ..+....|.... +
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 478999999999999999999973221000000 00 001112222111 0
Q ss_pred -hhcCceeeeeeEEEEe-cCeeEEEEeCCCCCc-------------hHHHHHHHH-HhcCeEEEEEeCCCCCChhHH-HH
Q 005154 71 -QERGITITSAATTTYW-NKHRINIIDTPGHVD-------------FTLEVERAL-RVLDGAICLFDSVAGVEPQSE-TV 133 (711)
Q Consensus 71 -~~~giti~~~~~~~~~-~~~~i~liDtPG~~d-------------f~~~~~~~l-~~~D~~llvvda~~g~~~~t~-~~ 133 (711)
...|++-......+.. ....++||||||... +...+..++ ..+|++++|+|++.+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0123333333333333 345799999999765 222234444 367999999999998877776 67
Q ss_pred HHHHHhcCCCeEEEEeccCcCCc
Q 005154 134 WRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 134 ~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
++.+...+.|+++|+||+|+...
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHhcCCCEEEEEeCcccCCc
Confidence 88888889999999999998753
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.28 E-value=2.5e-11 Score=132.09 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=72.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCc-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~d- 101 (711)
...|+|+|++|||||||+++|+ +........ + ..|.......+.+.+ ..++++||||+.+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls---g~~~~i~~~-~--------------ftTl~p~~G~V~~~~~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT---RAHPKIAPY-P--------------FTTLSPNLGVVEVSEEERFTLADIPGIIEG 218 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC---SSCCEECCC-T--------------TCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCccccCc-c--------------cceecceeeEEEecCcceEEEEeccccccc
Confidence 3568999999999999999994 432211110 0 113333444455554 7899999999864
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh-----cCCCeEEEEeccCcCCc
Q 005154 102 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 156 (711)
Q Consensus 102 ------f~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~-----~~ip~ivviNK~D~~~~ 156 (711)
+.....+.+..+|.+++++|++.....+....++++.. ...|.++|+||+|....
T Consensus 219 a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 219 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 22334455677999999999971111112222233222 36899999999998653
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=1.2e-12 Score=142.01 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=45.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEE---------------------
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT--------------------- 84 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~--------------------- 84 (711)
+|+|+|++|+|||||+|+|+... ...+. .++ .|+.......
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~---~~~~~-~p~--------------tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD---VEIAN-YPF--------------TTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccC-CCC--------------cccCCceEEEeeccCCchHHhhhhccccccc
Confidence 78999999999999999997322 11111 111 1222211111
Q ss_pred Eec---CeeEEEEeCCCCCchHH-------HHHHHHHhcCeEEEEEeCCCC
Q 005154 85 YWN---KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVAG 125 (711)
Q Consensus 85 ~~~---~~~i~liDtPG~~df~~-------~~~~~l~~~D~~llvvda~~g 125 (711)
.++ ...++||||||+.++.. ....+++.+|++++|+|++++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 011 35799999999875321 122356889999999999875
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.24 E-value=4.3e-11 Score=128.00 Aligned_cols=62 Identities=21% Similarity=0.115 Sum_probs=39.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.++.+.|+||||..+.. ......+|++++|+|+..+...+... . .-...|.++|+||+|+..
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCC
Confidence 67899999999975322 23467899999999998764322111 1 124578999999999864
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.19 E-value=7.7e-11 Score=126.81 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceee----------------------eec--CCCccccchhhhh-------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG----------------------EVH--EGTATMDWMEQEQ------- 71 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~----------------------~~~--~g~~~~d~~~~e~------- 71 (711)
..+.|+++|..|+|||||+|+|+...-.....+ ... .+..+.|+.....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 467999999999999999999974221000000 000 0111122211111
Q ss_pred ---hcCceeeeeeEEEEe---cCeeEEEEeCCCCCch-------------HHHHHHHHHhcCeEEEEEeCCCC-C-ChhH
Q 005154 72 ---ERGITITSAATTTYW---NKHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLFDSVAG-V-EPQS 130 (711)
Q Consensus 72 ---~~giti~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~~llvvda~~g-~-~~~t 130 (711)
..+..+......+.. ....++||||||..++ ...+..+++.+|++|+|+|+... . ....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 012222223333322 3568999999998887 66677889999999999987532 2 2233
Q ss_pred HHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 131 ETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 131 ~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
..+++.+...+.|+++|+||+|+...
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCC
Confidence 44555555678899999999998753
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.18 E-value=4e-11 Score=122.76 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=76.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcC--CcceeeeecCCCccc---------cchhhhh--hcCceeeeeeE------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTG--RNYKIGEVHEGTATM---------DWMEQEQ--ERGITITSAAT------ 82 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g--~~~~~~~~~~g~~~~---------d~~~~e~--~~giti~~~~~------ 82 (711)
.+...++++|..|+|||||++.|..... ........+++...+ ++...+. .++........
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 4568889999999999999999975432 211122323332222 1111110 00100000000
Q ss_pred ---------EE-E-ecCeeEEEEeCCCCCchHHH------HHHHHHhcCeEEEEEeCCCCCChhHHH-H----HHHHHhc
Q 005154 83 ---------TT-Y-WNKHRINIIDTPGHVDFTLE------VERALRVLDGAICLFDSVAGVEPQSET-V----WRQADKY 140 (711)
Q Consensus 83 ---------~~-~-~~~~~i~liDtPG~~df~~~------~~~~l~~~D~~llvvda~~g~~~~t~~-~----~~~~~~~ 140 (711)
.+ . ..++.+.||||||..++... +..++.. +++|+++|+.......... . .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 0 02368999999999876432 2234455 8999999998765544322 1 1223445
Q ss_pred CCCeEEEEeccCcCCc
Q 005154 141 GVPRICFVNKMDRLGA 156 (711)
Q Consensus 141 ~ip~ivviNK~D~~~~ 156 (711)
++|.++|+||+|+...
T Consensus 171 ~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 171 GATTIPALNKVDLLSE 186 (262)
T ss_dssp TSCEEEEECCGGGCCH
T ss_pred CCCeEEEEeccccccc
Confidence 8999999999998753
No 196
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.11 E-value=6.6e-11 Score=131.47 Aligned_cols=216 Identities=17% Similarity=0.171 Sum_probs=116.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCC-Cccccch-hhhhhcCceeeeeeE-------------E
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEG-TATMDWM-EQEQERGITITSAAT-------------T 83 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g-~~~~d~~-~~e~~~giti~~~~~-------------~ 83 (711)
.+.++|+++|++|+||||++++|.+.. |........|.. ....++. ......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543 322112221111 1111221 122334554433211 1
Q ss_pred EEecCeeEEEEeCCCCCc----hHHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCCc
Q 005154 84 TYWNKHRINIIDTPGHVD----FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 156 (711)
Q Consensus 84 ~~~~~~~i~liDtPG~~d----f~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~~ 156 (711)
+.+.++.+.||||||... +..++....+ .+|.+++|+|+..+.. ........... +|+ .+|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 123678999999999873 3444333322 6799999999998764 22233333332 785 899999998732
Q ss_pred cHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHHHHHHHHHHhcc
Q 005154 157 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 236 (711)
Q Consensus 157 ~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~l~~~ 236 (711)
....+ ++...++.+.. .++.++. +. |+.......|-+...|. .....|+|.+.+.
T Consensus 256 -~g~~l-~~~~~~g~PI~--fig~ge~--~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 -GGGAL-SAVAATKSPII--FIGTGEH--ID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp -CTHHH-HHHHHHCCCEE--EEECSSS--TT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred -hHHHH-HHHHHhCCCeE--Eeccccc--hh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 22223 35556665321 2222221 11 11110000000000010 0024567777655
Q ss_pred ----CHHHHHHHhcCCCCCHHHHHHHHHhhhhcC
Q 005154 237 ----DDEAMESYLEGNEPDEETIKKLIRKGTIAG 266 (711)
Q Consensus 237 ----~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~ 266 (711)
+++++++|++| .++.+++...+++....+
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G 343 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 67899999988 677788888887765443
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=4.2e-09 Score=112.02 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec-----------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 87 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------------- 87 (711)
.+|+|+|.+|+|||||+|+|+.... ..+. .+ +.|+......+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~---~v~~-~p--------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI---EAAN-YP--------------FCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------C--------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---cccC-CC--------------CceECceEEEEecCCcccceeeeeeccccee
Confidence 5799999999999999999974321 1111 11 11222222222222
Q ss_pred CeeEEEEeCCCCCchHH-------HHHHHHHhcCeEEEEEeCCC
Q 005154 88 KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~-------~~~~~l~~~D~~llvvda~~ 124 (711)
...++||||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25799999999988643 24567899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.94 E-value=2.6e-09 Score=113.55 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHh----cCCcceeeeecCCCccc------cchh---hhhhcCceeeeee------
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTATM------DWME---QEQERGITITSAA------ 81 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~----~g~~~~~~~~~~g~~~~------d~~~---~e~~~giti~~~~------ 81 (711)
..+...++|+|++|+|||||+++|+.. .|.+.-.+ .+.++... +... .-+..+.-+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~-~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA-VDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE-EcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 345788999999999999999999733 23322221 11111110 0000 0000111110000
Q ss_pred ----------EEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEecc
Q 005154 82 ----------TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 151 (711)
Q Consensus 82 ----------~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~ 151 (711)
..+.+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~ 203 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKA 203 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEch
Confidence 00223578999999999875322 23478899999999875432110 00001 134778889999
Q ss_pred CcCC
Q 005154 152 DRLG 155 (711)
Q Consensus 152 D~~~ 155 (711)
|+..
T Consensus 204 Dl~~ 207 (337)
T 2qm8_A 204 DDGD 207 (337)
T ss_dssp STTC
T ss_pred hccC
Confidence 9753
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.90 E-value=2e-08 Score=109.96 Aligned_cols=217 Identities=12% Similarity=0.113 Sum_probs=115.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCCc-cccchh-hhhhcCceeeeeeE-------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWME-QEQERGITITSAAT------------- 82 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~~-~~d~~~-~e~~~giti~~~~~------------- 82 (711)
.+.++|+++|+.|+||||++..|.+.. |........+.... ..+... .....|+.+.....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999997443 32211222222111 111110 12233444333210
Q ss_pred EEEecCeeEEEEeCCCCCchHHHHHHH------HHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCe-EEEEeccCcCC
Q 005154 83 TTYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 155 (711)
Q Consensus 83 ~~~~~~~~i~liDtPG~~df~~~~~~~------l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~-ivviNK~D~~~ 155 (711)
.+.+.++.+.||||||...+...+... +...|.+++|+|+..+... ....+... .++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA--ANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH--HHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH--HHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 111257899999999987654443333 2356899999999876322 22222222 23563 47999999753
Q ss_pred ccHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCceeeeecccHhHHHHHHHH--HHHHHHHH
Q 005154 156 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI 233 (711)
Q Consensus 156 ~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--r~~l~e~l 233 (711)
.. ....++...++.+... ++.+.... ....|. |..+.+.+... ...++|.+
T Consensus 255 -~~-g~~l~i~~~~~~Pi~~----iG~ge~v~--------dl~~f~-------------p~~~a~~l~g~gD~~~Lie~a 307 (433)
T 2xxa_A 255 -RG-GAALSIRHITGKPIKF----LGVGEKTE--------ALEPFH-------------PDRIASRILGMGDVLSLIEDI 307 (433)
T ss_dssp -CC-THHHHHHHHHCCCEEE----EECSSSSS--------CEEECC-------------HHHHHHHHHCCCTTHHHHHHH
T ss_pred -cH-HHHHHHHHHHCCCeEE----EecCCCch--------hhhhcC-------------hHHHHHHHhCccchHHHHHHH
Confidence 22 2333566666653221 11111110 111121 11111111111 12233322
Q ss_pred -----hccCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcc
Q 005154 234 -----VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSF 268 (711)
Q Consensus 234 -----~~~~d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~ 268 (711)
.+.+++++++|++|+.++.+++...+++....+.+
T Consensus 308 ~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 308 ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred HHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23468899999998889999999999887655443
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.90 E-value=5.7e-09 Score=109.13 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccchhhhhhcCceeeeeeEEEEe--cCeeEEEEeCCCC-
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH- 99 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~i~liDtPG~- 99 (711)
..+|+++|+.|+|||||+++|+.. +.....+ +. .|.... .++........+.. ....+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~g-i~~~g~~~~--------~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERV-ISGAAEKIE--------RTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC-CccCCCC-cccCCcccC--------CcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 478899999999999999998521 0111111 10 000000 01111111111111 2357899999998
Q ss_pred ------CchHHHHH-------HHHHhc-------------CeEEEEEeCCC-CCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 100 ------VDFTLEVE-------RALRVL-------------DGAICLFDSVA-GVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 100 ------~df~~~~~-------~~l~~~-------------D~~llvvda~~-g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
..|...+. ..++.+ ++++++++++. ++.+.....++.+. .++|+++|+||.|
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~D 166 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKAD 166 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCC
Confidence 33322222 344433 33666666654 58877766655553 4679999999999
Q ss_pred cCC
Q 005154 153 RLG 155 (711)
Q Consensus 153 ~~~ 155 (711)
+..
T Consensus 167 l~~ 169 (301)
T 2qnr_A 167 TLT 169 (301)
T ss_dssp GSC
T ss_pred CCC
Confidence 865
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.3e-08 Score=110.62 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcce-eeeecCCCccccchhhhhhcCceeeeeeEEE--Eec--CeeEEEEeCCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTT--YWN--KHRINIIDTPG 98 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~-~~~~~~g~~~~d~~~~e~~~giti~~~~~~~--~~~--~~~i~liDtPG 98 (711)
..+|+|+|++|+|||||+++|+ |.... .+. +....+. .. |+......+ ... ...+++|||||
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~---g~~~~~~~~---~~~~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY---PGPSHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHT---TCCCCCCCC---CSCC------------CCEEEEEECC------CEEEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHh---CCCCCCCCC---CCcccCC-----cc--ceeeeeEEEEEecCCcccceeeeechh
Confidence 3678999999999999999995 32211 110 1100010 00 111111111 111 23789999999
Q ss_pred CCchHH------HH--------HHHH-----------Hh--cCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEec
Q 005154 99 HVDFTL------EV--------ERAL-----------RV--LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 150 (711)
Q Consensus 99 ~~df~~------~~--------~~~l-----------~~--~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK 150 (711)
+.++.. .+ ..++ +. ++++|++++++ .++.+....+++.+.. ++|+|+|+||
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEc
Confidence 887532 11 1111 11 34577777776 6888877777776654 8999999999
Q ss_pred cCcCC
Q 005154 151 MDRLG 155 (711)
Q Consensus 151 ~D~~~ 155 (711)
+|+..
T Consensus 177 ~Dll~ 181 (418)
T 2qag_C 177 ADTLT 181 (418)
T ss_dssp TTSSC
T ss_pred ccCcc
Confidence 99865
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.86 E-value=8.8e-09 Score=102.64 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee--cCCCccccchhhhhhcCcee-eee--e-EE------------E
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITI-TSA--A-TT------------T 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~--~~g~~~~d~~~~e~~~giti-~~~--~-~~------------~ 84 (711)
+.++|+++|++|+|||||+++|+...........+ +.+ ...|....+.. |... ... . .. +
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI-AKFDAERMEKH-GAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT-THHHHHHHHTT-TCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC-CCccHHHHHhc-CCcEEEecCCceEeccHHHHHHHHHHH
Confidence 47999999999999999999998664332222222 222 11222211111 1110 000 0 00 0
Q ss_pred EecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 85 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
...+..+.++||+|....... .-...+..+.++|+..+...... .....+.|.++|+||+|+.
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred hcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 012347999999995321100 01234667788887544322211 1122468999999999974
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.84 E-value=5.6e-08 Score=104.03 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEE-------------------
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 85 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~------------------- 85 (711)
.+|+|+|.+|+|||||+++|+........ .+++ |+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~----~p~~--------------Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN----YPFA--------------TIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS----CCGG--------------GGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC----CCCc--------------eeccceeeEecChHHHHHHHHHhcccccc
Confidence 46899999999999999999854311100 0001 1111111111
Q ss_pred --ecCeeEEEEeCCCCCch-------HHHHHHHHHhcCeEEEEEeCCC
Q 005154 86 --WNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 86 --~~~~~i~liDtPG~~df-------~~~~~~~l~~~D~~llvvda~~ 124 (711)
+.+..++||||||+.++ .......++.+|++++|+|+.+
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 13467999999998864 3456778999999999999985
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.73 E-value=1.2e-07 Score=103.17 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCC-ccccchh-hhhhcCceeeeeeE-------------EE
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAAT-------------TT 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~-~~~d~~~-~e~~~giti~~~~~-------------~~ 84 (711)
+.+.|+++|++|+||||++..|.... |........+... ...+... .....|+.+..... .+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999996332 2111111111100 0000000 11112332221100 01
Q ss_pred EecCeeEEEEeCCCCCc------hHHHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 85 YWNKHRINIIDTPGHVD------FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~d------f~~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.++++.+.||||||... +..++....+ ..|.+++|+|+..|... ....+...+.--+..+|+||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc-c
Confidence 12478999999999644 4445444333 34999999999976332 223333333334578899999986 3
Q ss_pred cHHHHHHHHHHHhCCcceEEEeccCCCCCceeeeecccceEEeecCcCCCcee-eeecc-cHhHHH------HHHHHHHH
Q 005154 157 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKF-AYEDI-PANLQK------MAQEYRSQ 228 (711)
Q Consensus 157 ~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~g~vd~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~------~~~~~r~~ 228 (711)
.....+ ++....+.+.. + ++. |..+ ....+ |+.+.+ ....++++
T Consensus 253 ~~G~al-s~~~~~g~Pi~---f-ig~-----------------------Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~ 304 (433)
T 3kl4_A 253 KGGGAL-SAVVATGATIK---F-IGT-----------------------GEKIDELETFNAKRFVSRILGMGDIESILEK 304 (433)
T ss_dssp CHHHHH-HHHHHHTCEEE---E-EEC-----------------------CSSSSCEEECCHHHHHHHHHCSSHHHHHHHH
T ss_pred cchHHH-HHHHHHCCCEE---E-EEC-----------------------CCChHhCccCCHHHHHHHhcCCchHHHHHHH
Confidence 333223 33334443211 1 111 2111 11222 333333 23344455
Q ss_pred HHHHHhccC-HHHHHHHhcCC-CCCHHHHHHHHHhhhhcC
Q 005154 229 MIETIVELD-DEAMESYLEGN-EPDEETIKKLIRKGTIAG 266 (711)
Q Consensus 229 l~e~l~~~~-d~l~e~~l~~~-~~~~~~~~~~l~~~~~~~ 266 (711)
+.+.+.+.+ ++++++|.+|+ .++-+++...+++....+
T Consensus 305 ~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 305 VKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp HHHC-------------------CCHHHHHHHHHHHHHCC
T ss_pred HHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 555444443 67999999997 899999998887665444
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=8.9e-08 Score=103.76 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=78.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC--eeEEEEeCCC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 98 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~i~liDtPG 98 (711)
...+.+++|+|++|+|||||++.|+ |..- .|...... ..+.+.......+...+ ..++++|+||
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~---G~~l------~g~~~~~~-----~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLF---NTKF------EGEPATHT-----QPGVQLQSNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHH---TSCC-------------C-----CSSCEEEEEEEEEEC--CEEEEEEEEEEC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHh---Cccc------cCCcCCCC-----CccceEeeEEEEeecCccccccchhhhhh
Confidence 4446779999999999999999996 3210 00000000 01223222112222222 2689999999
Q ss_pred CCchH--------------HHHHHHHHh-------------c--C-eEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEE
Q 005154 99 HVDFT--------------LEVERALRV-------------L--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFV 148 (711)
Q Consensus 99 ~~df~--------------~~~~~~l~~-------------~--D-~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivvi 148 (711)
..+.. ..+..++.. + | ++++++|+.+++.....++++.+. .++|+|+|+
T Consensus 105 ~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi 183 (427)
T 2qag_B 105 FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPII 183 (427)
T ss_dssp CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEE
T ss_pred hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEE
Confidence 86531 112222221 1 2 477888999999888888877776 789999999
Q ss_pred eccCcCCcc-HHHHHHHHHHHhCC
Q 005154 149 NKMDRLGAN-FFRTRDMIVTNLGA 171 (711)
Q Consensus 149 NK~D~~~~~-~~~~~~~l~~~l~~ 171 (711)
||+|....+ .....+.+++.|..
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~~ 207 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELVS 207 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHBT
T ss_pred cchhccchHHHHHHHHHHHHHHHH
Confidence 999988643 55555666665543
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.62 E-value=5.3e-09 Score=112.55 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCc-c-eeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRN-Y-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~-~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
.++|+++|.+|+|||||+|+|+...... . ...... .|.|.......+ +..++++||||..+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~--------------~gtT~~~~~~~~---~~~~~liDtPG~~~ 224 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF--------------PGTTLDMIEIPL---ESGATLYDTPGIIN 224 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEEC--------------TTSSCEEEEEEC---STTCEEEECCSCCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCC--------------CCeEEeeEEEEe---CCCeEEEeCCCcCc
Confidence 3689999999999999999998541100 0 011111 234544433322 22489999999764
Q ss_pred hH-------HHHHHHH---HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc-cHHHHHHHHHHHhC
Q 005154 102 FT-------LEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLG 170 (711)
Q Consensus 102 f~-------~~~~~~l---~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~-~~~~~~~~l~~~l~ 170 (711)
.. .+....+ +..|.+++++|+...........+..+...++|+++|+||+|.... +.....+.+++.+|
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 21 1223333 6679999999995321111111123344567899999999998764 35667777888887
Q ss_pred C
Q 005154 171 A 171 (711)
Q Consensus 171 ~ 171 (711)
.
T Consensus 305 ~ 305 (369)
T 3ec1_A 305 E 305 (369)
T ss_dssp T
T ss_pred C
Confidence 6
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.60 E-value=9.3e-09 Score=110.53 Aligned_cols=133 Identities=9% Similarity=0.126 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCc-ceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCchH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 103 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~-~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df~ 103 (711)
++|+++|.+|+|||||+|+|+...... .....+ ....|.|.......+ . ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~------------~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITT------------SHFPGTTLDLIDIPL--D-EESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEE------------ECCC----CEEEEES--S-SSCEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceec------------CCCCCeecceEEEEe--c-CCeEEEeCCCcCcHH
Confidence 689999999999999999998553211 111100 011233444433322 2 238999999976431
Q ss_pred -------HHHHHH---HHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCcc-HHHHHHHHHHHhCCc
Q 005154 104 -------LEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAK 172 (711)
Q Consensus 104 -------~~~~~~---l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~~-~~~~~~~l~~~l~~~ 172 (711)
.+.... ....+.+++++|+...........+..+...++|+++|+||+|..... .....+.+++.+|..
T Consensus 226 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp SGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred HHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 222222 245688999999853211111111233345678999999999987643 666777788888763
No 208
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.57 E-value=9.2e-08 Score=93.80 Aligned_cols=85 Identities=13% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEE--eCCC-
Q 005154 320 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 396 (711)
Q Consensus 320 ~~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 396 (711)
.++||.+.|..++. +.|++..|||.+|++++||+|.+.+.+.+.+|++|...+ +++++|.|||++++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD----VETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS----SCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC----EEeEEECCCCEEEEEEcCCCH
Confidence 36899999999876 579999999999999999999999988889999987654 67999999999999 7765
Q ss_pred -ccccCccccCCCCc
Q 005154 397 -DTITGETLCDADHP 410 (711)
Q Consensus 397 -~~~~Gdtl~~~~~~ 410 (711)
++..||+|++++++
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58999999987654
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.54 E-value=4e-07 Score=93.44 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch-
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df- 102 (711)
.+++++|+.|+|||||++.|+..... ..|.+. .|... ......+++....... .-...++++|+||..+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i---~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKI---PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCccc---CcceeeeeeEEEeecC---CCcCCceEEechhhhhhc
Confidence 68999999999999999999733211 112110 01000 0000011111111100 01136899999997531
Q ss_pred ------------HH-HHHHHH--------------HhcCeEEEEEeCC-CCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 103 ------------TL-EVERAL--------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ------------~~-~~~~~l--------------~~~D~~llvvda~-~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
.. .....+ ..++++++++|.. +|..+.....++.+.+. +++++|+||+|..
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 11 011111 1248889999965 89999998888888777 9999999999998
Q ss_pred Ccc-HHHHHHHHHHHh
Q 005154 155 GAN-FFRTRDMIVTNL 169 (711)
Q Consensus 155 ~~~-~~~~~~~l~~~l 169 (711)
..+ .....+.+++.+
T Consensus 154 t~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 154 TLEEKSEFKQRVRKEL 169 (270)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 743 444445555444
No 210
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.49 E-value=1.2e-07 Score=100.88 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=62.6
Q ss_pred CceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-----------hhHHHHHHHHHh---
Q 005154 74 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK--- 139 (711)
Q Consensus 74 giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-----------~~t~~~~~~~~~--- 139 (711)
..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++.-+ .....++..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 445555556677789999999999999999999999999999999999987421 122334444433
Q ss_pred -cCCCeEEEEeccCcC
Q 005154 140 -YGVPRICFVNKMDRL 154 (711)
Q Consensus 140 -~~ip~ivviNK~D~~ 154 (711)
.++|+++|+||+|+.
T Consensus 258 ~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 258 FTDTSIILFLNKKDLF 273 (353)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred ccCCcEEEEEECcCch
Confidence 478999999999974
No 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.45 E-value=2.9e-06 Score=91.94 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-eeEEEEeCCCCCch
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 102 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~i~liDtPG~~df 102 (711)
...++|+|++|+|||||+|.|+ |.... +.|....+..+..+ +++ .+.... ..++++|+||...-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~---Gl~~p----~~GsI~~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR---GIGNE----EEGAAKTGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TCCTT----STTSCCCCC----C-CCE-------EEECSSCTTEEEEECCCGGGS
T ss_pred CeEEEEECCCCCcHHHHHHHHh---CCCCc----cCceEEECCeecce-eEE-------eccccccCCeeehHhhcccch
Confidence 4589999999999999999996 43221 11211111111100 121 111112 26899999996421
Q ss_pred ---HHHHHH--HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcC
Q 005154 103 ---TLEVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 154 (711)
Q Consensus 103 ---~~~~~~--~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~ 154 (711)
..+... .+...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|..
T Consensus 134 ~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 134 NFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp SCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 222222 2233455554 77654 46677777777788899999999998864
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.45 E-value=2e-07 Score=100.17 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEec---------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------- 87 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------------- 87 (711)
...+|+|+|.+|+|||||+|+|+... ..... . .+.|+......+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~-~--------------p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~ 82 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ---ASAEN-F--------------PFCTIDPNESRVPVPDERFDFLCQYHKPAS 82 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------------------------CCSEEEEECCCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---ccccC-C--------------CccccCceeEEEEECCccceeeccccCccc
Confidence 34679999999999999999996221 11111 1 112333333333222
Q ss_pred --CeeEEEEeCCCCCchHH-------HHHHHHHhcCeEEEEEeCCC
Q 005154 88 --KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 88 --~~~i~liDtPG~~df~~-------~~~~~l~~~D~~llvvda~~ 124 (711)
...+++|||||+..+.. .+...++.+|++++|+|+.+
T Consensus 83 ~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 83 KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34699999999987654 56788999999999999974
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.43 E-value=4.9e-07 Score=98.87 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC---CcceeeeecCCC-ccccchhh-hhhcCceeeeee-E-----EE------E
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAA-T-----TT------Y 85 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g---~~~~~~~~~~g~-~~~d~~~~-e~~~giti~~~~-~-----~~------~ 85 (711)
+.++|+++|++|+||||+++.|..... ........+... ...+.... ....|+.+.... . .+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999975421 111111111110 01111110 011122221110 0 00 0
Q ss_pred ecCeeEEEEeCCCCCchHHHHHHHH---H---hcCeEEEEEeCCCCCChhHHHHHHHHHhcCC-C-eEEEEeccCcCCcc
Q 005154 86 WNKHRINIIDTPGHVDFTLEVERAL---R---VLDGAICLFDSVAGVEPQSETVWRQADKYGV-P-RICFVNKMDRLGAN 157 (711)
Q Consensus 86 ~~~~~i~liDtPG~~df~~~~~~~l---~---~~D~~llvvda~~g~~~~t~~~~~~~~~~~i-p-~ivviNK~D~~~~~ 157 (711)
+.++.+.||||||...........+ . .+|.+++|+|+..|.. .....+.. ..++ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~-~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAF-KEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHH-HTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHH-hhcccCCeEEEEeCCCCcc-c
Confidence 1568899999999876433333222 1 4699999999987742 22222222 2346 7 678999999853 2
Q ss_pred HHHHHHHHHHHhCCc
Q 005154 158 FFRTRDMIVTNLGAK 172 (711)
Q Consensus 158 ~~~~~~~l~~~l~~~ 172 (711)
....+ ++...++.+
T Consensus 254 ~g~~l-~~~~~~~~p 267 (432)
T 2v3c_C 254 GGGAL-SAVAETKAP 267 (432)
T ss_dssp THHHH-HHHHHSSCC
T ss_pred hHHHH-HHHHHHCCC
Confidence 22233 355556553
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.39 E-value=2.6e-07 Score=98.68 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=54.3
Q ss_pred ceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-----------hhHHHHHHHHHh----
Q 005154 75 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK---- 139 (711)
Q Consensus 75 iti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-----------~~t~~~~~~~~~---- 139 (711)
.|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++.-+ .....++..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 34444455677789999999999999999999999999999999999997321 122334444432
Q ss_pred cCCCeEEEEeccCcC
Q 005154 140 YGVPRICFVNKMDRL 154 (711)
Q Consensus 140 ~~ip~ivviNK~D~~ 154 (711)
.++|+|+|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 478999999999974
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=1.2e-05 Score=87.45 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCc-cccch-hhhhhcCceeeeeeEE-------------E
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAATT-------------T 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~-~~d~~-~~e~~~giti~~~~~~-------------~ 84 (711)
+.+.|+++|.+|+||||++..|.... |........+.... ..+.. ......|+.+...... +
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999997432 21111111111100 00000 1112234433221100 0
Q ss_pred EecCeeEEEEeCCCCCch----HHHHH--HHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 85 YWNKHRINIIDTPGHVDF----TLEVE--RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df----~~~~~--~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
..+++.+.||||||.... ..+.. ......|.+++|+|+..|... ..........--+..+|+||+|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc
Confidence 114589999999996542 22222 223346999999999986332 2222333333334568999999864
No 216
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.23 E-value=8e-07 Score=93.63 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=63.3
Q ss_pred cCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC---------CC--hhHHHHHHHHHh--
Q 005154 73 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---------VE--PQSETVWRQADK-- 139 (711)
Q Consensus 73 ~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g---------~~--~~t~~~~~~~~~-- 139 (711)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++. .. .....+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 44466666677778899999999999999999999999999999999999831 11 112234444432
Q ss_pred --cCCCeEEEEeccCcCC
Q 005154 140 --YGVPRICFVNKMDRLG 155 (711)
Q Consensus 140 --~~ip~ivviNK~D~~~ 155 (711)
.++|+++|+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 4789999999999853
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=1.1e-06 Score=91.88 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=51.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCC-Chh-HHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQ-SETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~-~~~-t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
.+++||| +..|...+..+++.+|++|+|+|+++.. ... ...++..+...++|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8888777778899999999999999764 222 23444555667899999999999864
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.20 E-value=4.2e-07 Score=97.99 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=60.3
Q ss_pred eeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCC---------CC--hhHHHHHHHHHh----c
Q 005154 76 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---------VE--PQSETVWRQADK----Y 140 (711)
Q Consensus 76 ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g---------~~--~~t~~~~~~~~~----~ 140 (711)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++. .. .....++..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 44444556677889999999999999999999999999999999999862 11 112334444432 3
Q ss_pred CCCeEEEEeccCcC
Q 005154 141 GVPRICFVNKMDRL 154 (711)
Q Consensus 141 ~ip~ivviNK~D~~ 154 (711)
++|+++|+||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 68999999999974
No 219
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.19 E-value=9.2e-07 Score=92.81 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=62.2
Q ss_pred cCceeeeeeEEEEecCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCC-------CCCCh----hHHHHHHHHHh--
Q 005154 73 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-------AGVEP----QSETVWRQADK-- 139 (711)
Q Consensus 73 ~giti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~-------~g~~~----~t~~~~~~~~~-- 139 (711)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-.. .....+..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 444555666677788999999999999999999999999999999999876 21111 12233444432
Q ss_pred --cCCCeEEEEeccCcCC
Q 005154 140 --YGVPRICFVNKMDRLG 155 (711)
Q Consensus 140 --~~ip~ivviNK~D~~~ 155 (711)
.++|+++|+||+|+..
T Consensus 231 ~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp GGTTCEEEEEEECHHHHH
T ss_pred ccCCceEEEEEECchhhh
Confidence 4789999999999753
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.15 E-value=3.8e-06 Score=90.41 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=57.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecC-------------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------- 88 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~------------- 88 (711)
.+...|+|+|++|+|||||+|+|+..... ..+. .+ +.|+......+.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a--~~~~-~p--------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~ 80 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLG--NPAN-YP--------------YATIDPEEAKVAVPDERFDWLCEAYKPK 80 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTT--STTC-CS--------------SCCCCTTEEEEEECCHHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc--cccC-CC--------------ceeecceeeeeeeCCcchhhhhhhcccc
Confidence 34578999999999999999999742210 1110 11 223333333333332
Q ss_pred ----eeEEEEeCCCCCc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 005154 89 ----HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 89 ----~~i~liDtPG~~d-------f~~~~~~~l~~~D~~llvvda~~ 124 (711)
..+.+|||||... +.......++.+|.+++|+|+.+
T Consensus 81 ~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 81 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 34467788899999999999975
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.13 E-value=1.4e-05 Score=77.98 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=85.2
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHh---cCCcceeeeecCCCccccchhhhhhcCceeeeeeE-EE------EecCeeEEE
Q 005154 25 RNIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TT------YWNKHRINI 93 (711)
Q Consensus 25 ~~I~iv-G~~~~GKSTL~~~Ll~~---~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~-~~------~~~~~~i~l 93 (711)
+.|+|. +..|+||||++-.|... .|...-.-+.+++....++... ...+..+-.... .+ -...+.+.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA-GKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT-SCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc-CCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 567777 56889999999888533 2322222222333322222221 111111111000 00 013589999
Q ss_pred EeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc-----CCCeEEEEeccCcCCccHHHHHHHHHHH
Q 005154 94 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANFFRTRDMIVTN 168 (711)
Q Consensus 94 iDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~-----~ip~ivviNK~D~~~~~~~~~~~~l~~~ 168 (711)
||||+... ..+..++..+|.+|+++.+...- ..+...++.+.+. ++++.+|+||+|.......+..+.++ .
T Consensus 81 iD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~-~ 156 (206)
T 4dzz_A 81 VDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIK-D 156 (206)
T ss_dssp EECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHH-H
T ss_pred EECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHH-H
Confidence 99999774 56678889999999999998766 6777777777654 46778999999965433333344443 3
Q ss_pred hCCc
Q 005154 169 LGAK 172 (711)
Q Consensus 169 l~~~ 172 (711)
++..
T Consensus 157 ~~~~ 160 (206)
T 4dzz_A 157 TGVK 160 (206)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 5644
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=5e-06 Score=86.38 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCc-cccch-hhhhhcCceeeeeeE-------------EEE
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-------------TTY 85 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~-~~d~~-~~e~~~giti~~~~~-------------~~~ 85 (711)
...|+++|..|+||||++..|.... |........+.... ..+.. ......|+.+..... .+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999996332 21111111111100 00000 011123444322110 011
Q ss_pred ecCeeEEEEeCCCCCc--hHHHHH------HHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCc
Q 005154 86 WNKHRINIIDTPGHVD--FTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 156 (711)
Q Consensus 86 ~~~~~i~liDtPG~~d--f~~~~~------~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~ 156 (711)
++++.+.||||||... ...... ..+..+|.+++|+|+..+ .......+.... .+| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 2578999999999877 432222 245578999999999865 222333333332 577 568899999753
Q ss_pred cHHHHHHHHHHHhCC
Q 005154 157 NFFRTRDMIVTNLGA 171 (711)
Q Consensus 157 ~~~~~~~~l~~~l~~ 171 (711)
... ...++...++.
T Consensus 254 ~~g-~~~~~~~~~~~ 267 (297)
T 1j8m_F 254 KGG-GALSAVAATGA 267 (297)
T ss_dssp THH-HHHHHHHTTTC
T ss_pred chH-HHHHHHHHHCc
Confidence 222 23344555553
No 223
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.05 E-value=2.2e-06 Score=91.22 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=50.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC-------C--CC--hhHHHHHHHHHh----cCCCeEEEEecc
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------G--VE--PQSETVWRQADK----YGVPRICFVNKM 151 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~-------g--~~--~~t~~~~~~~~~----~~ip~ivviNK~ 151 (711)
+...+.+|||+|+..|...+..+++.+|++|+|+|.++ . .. .....++..+.. .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999872 1 11 112234444432 478999999999
Q ss_pred CcC
Q 005154 152 DRL 154 (711)
Q Consensus 152 D~~ 154 (711)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 974
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.03 E-value=7.8e-06 Score=84.30 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=44.1
Q ss_pred EEeCCCCC-chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 93 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 93 liDtPG~~-df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+=+.|||. ....++...+..+|+++.|+|+.++.......+.+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 33579998 5678899999999999999999987766543333332 5789999999999875
No 225
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.02 E-value=1.9e-05 Score=76.42 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=37.3
Q ss_pred eEEEEeCC------CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH----HHHHh----cCCCeEEEEecc-CcC
Q 005154 90 RINIIDTP------GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK----YGVPRICFVNKM-DRL 154 (711)
Q Consensus 90 ~i~liDtP------G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~----~~~~~----~~ip~ivviNK~-D~~ 154 (711)
++..-.+| |+..+...+..++..+|++|+|||+++.-....+.-+ ..+.. .++|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34445555 6777777799999999999999999875322233222 22211 478999999995 676
Q ss_pred Cc
Q 005154 155 GA 156 (711)
Q Consensus 155 ~~ 156 (711)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.02 E-value=3.4e-06 Score=95.22 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=60.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEE---EecCeeEEEEeCCC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPG 98 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~---~~~~~~i~liDtPG 98 (711)
.+...|+|+|.+|+|||||+|+|+ |..... .+ +++ . ++.|........ ...+..+.|+||||
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~---g~~~~~-~~-~~t-t---------~~~T~gi~~~~~~~~~~~~~~i~LiDTpG 100 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLA---GKKKGF-SL-GST-V---------QSHTKGIWMWCVPHPKKPGHILVLLDTEG 100 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHT---TCSSCS-CC-CCS-S---------SCCCCSEEEEEEECSSSTTCEEEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHc---CCCCcc-cc-CCC-C---------CCceeEEEEeecccccCCCceEEEecCCC
Confidence 346889999999999999999996 321110 11 011 0 011111111101 12467899999999
Q ss_pred CCchHH------HHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc
Q 005154 99 HVDFTL------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 140 (711)
Q Consensus 99 ~~df~~------~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~ 140 (711)
..+... ....++...-..++|+|+..++..+....+..+...
T Consensus 101 i~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 101 LGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp BCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred cCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 875322 122223332222678898888988887776665543
No 227
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.83 E-value=7.3e-05 Score=73.37 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=82.8
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHh---cCCcceeeeecCCCccccchhhhhhcCceeeee-eEEEEecCeeEEEEeCCCC-
Q 005154 26 NIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNKHRINIIDTPGH- 99 (711)
Q Consensus 26 ~I~iv-G~~~~GKSTL~~~Ll~~---~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~-~~~~~~~~~~i~liDtPG~- 99 (711)
.|+++ +..|+||||++-.|... .| ..-.-+.++.....++... .+-...+-.. ...--...+.+.+||||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~-~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR-GSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH-SCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC-CCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Confidence 45565 66899999999988533 23 2222233333322222221 0000000000 0000024688999999997
Q ss_pred CchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc-CCCeEEEEeccCcCC-ccHHHHHHHHHHHhCCc
Q 005154 100 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 172 (711)
Q Consensus 100 ~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~-~ip~ivviNK~D~~~-~~~~~~~~~l~~~l~~~ 172 (711)
... .+..++..+|.+|+++.+...-...+...++.+... +.+..+|+|++|... ....+..+.+++ ++..
T Consensus 80 ~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 80 EDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp SSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred CcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 543 456788999999999998754444555666666663 778889999999765 333444555554 6643
No 228
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.73 E-value=0.00014 Score=73.80 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHH----HHH---H-hcCCCeEEEEec-cCcCCc
Q 005154 97 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQA---D-KYGVPRICFVNK-MDRLGA 156 (711)
Q Consensus 97 PG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~----~~~---~-~~~ip~ivviNK-~D~~~~ 156 (711)
.|+..+...+..++..+|++|+|||+++........-+ ..+ . ..+.|++|+.|| -|..++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 47788889999999999999999999865432222211 222 1 258999999997 587654
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.71 E-value=8.3e-05 Score=79.69 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=42.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 90 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+.-+|+| +++|........+.+|++++|+|+++....+...+.+.+ .+.|+++|+||+|+...
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 44455554 788988888888999999999999976544333333332 27899999999999754
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.67 E-value=0.00042 Score=70.33 Aligned_cols=86 Identities=8% Similarity=-0.060 Sum_probs=60.1
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC----cc--H-
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG----AN--F- 158 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~----~~--~- 158 (711)
..+.+.|||||+..........++..+|.+|+|+.+...........++.+.+.+++.+ +|+|+.|... .. .
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 56889999999876533233334457899999999886655566677777788889988 8999998421 11 1
Q ss_pred -HHHHHHHHHHhCCc
Q 005154 159 -FRTRDMIVTNLGAK 172 (711)
Q Consensus 159 -~~~~~~l~~~l~~~ 172 (711)
...++++.+.++..
T Consensus 207 ~~~~~~~~~~~~g~~ 221 (262)
T 2ph1_A 207 GEGKGESLAKKYNIG 221 (262)
T ss_dssp CCCCHHHHHHHTTCS
T ss_pred cccHHHHHHHHcCCC
Confidence 23466777777764
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.65 E-value=0.00015 Score=82.97 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=40.6
Q ss_pred CeeEEEEeCCCCCch---------HHHHHHHHH----hc-CeEEEEEeCCCCCCh-hHHHHHHHHHhcCCCeEEEEeccC
Q 005154 88 KHRINIIDTPGHVDF---------TLEVERALR----VL-DGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 88 ~~~i~liDtPG~~df---------~~~~~~~l~----~~-D~~llvvda~~g~~~-~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
.-.+.|+|.||.... ...+...++ .- ..+++++++...... ....+.+.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 357999999985431 122222222 22 566666766544332 234455555556889999999999
Q ss_pred cCCc
Q 005154 153 RLGA 156 (711)
Q Consensus 153 ~~~~ 156 (711)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 8753
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.63 E-value=0.00021 Score=78.43 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCcccc----chh-hhhhcCceeeeeeEEEE-----------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMD----WME-QEQERGITITSAATTTY----------- 85 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d----~~~-~e~~~giti~~~~~~~~----------- 85 (711)
.+...|+|+|..|+|||||+..|............+..+..+.. ... ....+++.+......+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 45678999999999999999999633210000011111111100 001 11233443322211100
Q ss_pred --ecCeeEEEEeCCCCCch----HHH---HHHHHHh-----cCeEEEEEeCCCCCChhHHHHHHHHH-hcCCCeEEEEec
Q 005154 86 --WNKHRINIIDTPGHVDF----TLE---VERALRV-----LDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVNK 150 (711)
Q Consensus 86 --~~~~~i~liDtPG~~df----~~~---~~~~l~~-----~D~~llvvda~~g~~~~t~~~~~~~~-~~~ip~ivviNK 150 (711)
..++.+.||||+|.... ..+ +.+.++. -+-++||+|+..|... ....+... ..++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCC-CEEEEEc
Confidence 14678999999997532 222 2233331 3578999999876322 12222222 2333 3578999
Q ss_pred cCcCCccHHHHHHHHHHHhCC
Q 005154 151 MDRLGANFFRTRDMIVTNLGA 171 (711)
Q Consensus 151 ~D~~~~~~~~~~~~l~~~l~~ 171 (711)
+|.. ... ..+-.+...++.
T Consensus 448 LD~t-akg-G~~lsi~~~~~~ 466 (503)
T 2yhs_A 448 LDGT-AKG-GVIFSVADQFGI 466 (503)
T ss_dssp GGGC-SCC-THHHHHHHHHCC
T ss_pred CCCc-ccc-cHHHHHHHHHCC
Confidence 9963 222 233444445554
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.62 E-value=0.00016 Score=75.83 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCcc-ccchhhh-h---hcCceee-eeeEE---------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT-MDWMEQE-Q---ERGITIT-SAATT--------- 83 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~~-~d~~~~e-~---~~giti~-~~~~~--------- 83 (711)
.+...|+++|..|+||||++..|.... |........+..... .+....- . ..++.+- .....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 456789999999999999999986332 211111111110000 0000000 0 2233332 11000
Q ss_pred -E---EecCeeEEEEeCCCCCchHHHHHHHHH------------hcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCe-
Q 005154 84 -T---YWNKHRINIIDTPGHVDFTLEVERALR------------VLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR- 144 (711)
Q Consensus 84 -~---~~~~~~i~liDtPG~~df~~~~~~~l~------------~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~- 144 (711)
+ ...++.+.||||||...........+. .+|.+++|+|+..+ .. .+.++... .+++
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~~~~~~~~i~ 257 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAEEFSKVADVS 257 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHHHHTTTSCCC
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHHHHhhcCCCc
Confidence 0 015789999999997664322222221 26899999999854 12 22223322 2444
Q ss_pred EEEEeccCcCCccHHHHHHHHHHHhCCc
Q 005154 145 ICFVNKMDRLGANFFRTRDMIVTNLGAK 172 (711)
Q Consensus 145 ivviNK~D~~~~~~~~~~~~l~~~l~~~ 172 (711)
=+|+||+|... .. ..+.++...++.+
T Consensus 258 GvVltk~d~~~-~~-g~~~~~~~~~~~P 283 (320)
T 1zu4_A 258 GIILTKMDSTS-KG-GIGLAIKELLNIP 283 (320)
T ss_dssp EEEEECGGGCS-CT-THHHHHHHHHCCC
T ss_pred EEEEeCCCCCC-ch-hHHHHHHHHHCcC
Confidence 37899999743 22 2344555556643
No 234
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.62 E-value=4.9e-05 Score=78.33 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~d 101 (711)
+..+|+++|.+|+|||||+|+|+... ....+. ..|.|.......+ +..+.++||||..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN--IAKTGD---------------RPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC--CC---------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc--eeecCC---------------CCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 35789999999999999999997211 111111 1233444332222 45799999999764
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.62 E-value=0.0001 Score=77.52 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=67.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc----CCcceeeeecCCCccccchhh------hhhcCceeeeeeEEE-------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTATMDWMEQ------EQERGITITSAATTT------- 84 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~----g~~~~~~~~~~g~~~~d~~~~------e~~~giti~~~~~~~------- 84 (711)
.+...++++|+.|+|||||+..|.... |.+.-.+. + ....... -+..|+.+......+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~-D----~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS-D----TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-C----CSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee-c----ccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 346789999999999999999996331 21111111 0 0000111 122343322111000
Q ss_pred ------EecCeeEEEEeCCCCCc----hHHHHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccC
Q 005154 85 ------YWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 152 (711)
Q Consensus 85 ------~~~~~~i~liDtPG~~d----f~~~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D 152 (711)
...++.+.++||+|... +..+..... -..|-.++++|+..+. +.....+...+.--...+++||+|
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 01356788999999643 333332221 2359999999988763 223333333322223478899999
Q ss_pred cC
Q 005154 153 RL 154 (711)
Q Consensus 153 ~~ 154 (711)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 73
No 236
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.60 E-value=0.00011 Score=76.38 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHHhcCeEEEEEeCCCCC-ChhH-HHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 107 ERALRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 107 ~~~l~~~D~~llvvda~~g~-~~~t-~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
..+++.+|++++|+|+++.. .... ..++..+...++|+++|+||+|+...
T Consensus 74 r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 74 RPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp TTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 34789999999999999764 3332 34555666789999999999998653
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.50 E-value=5.6e-05 Score=76.98 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=39.3
Q ss_pred CCCCch-HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 97 PGHVDF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 97 PG~~df-~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
|||... ..++...+..+|+++.|+|+..+.......+- .+ ++|+++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 898854 46888999999999999999977655432211 12 899999999999975
No 238
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.49 E-value=0.00015 Score=77.67 Aligned_cols=57 Identities=12% Similarity=-0.091 Sum_probs=39.5
Q ss_pred CCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 98 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 98 G~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
..++|...+....+.+|++++|+|+++....+...+.+. ..++|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCCc
Confidence 346788888888888899999999987322111112121 137899999999998653
No 239
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.48 E-value=0.00017 Score=72.97 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=56.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHH---h---cCCCeE-EEEeccCcCCccHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---K---YGVPRI-CFVNKMDRLGANFF 159 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~---~---~~ip~i-vviNK~D~~~~~~~ 159 (711)
..+.+.|||||+.... .+..++..+|.+|+++.+...-.......++.+. . .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4688999999997653 3466788999999999986533222333333332 2 356765 88999997554445
Q ss_pred HHHHHHHHHhCCc
Q 005154 160 RTRDMIVTNLGAK 172 (711)
Q Consensus 160 ~~~~~l~~~l~~~ 172 (711)
+..+.+++.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677777777654
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.46 E-value=0.00037 Score=75.65 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCc---ceeeeecCCCc-cccch-hhhhhcCceeeeeeE-----E-----E---
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRN---YKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----T-----T--- 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~---~~~~~~~~g~~-~~d~~-~~e~~~giti~~~~~-----~-----~--- 84 (711)
+...|+++|..|+||||++..|....... ......+.... ..+.. ......|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999996432211 11111111110 00000 011123443332210 0 0
Q ss_pred EecCeeEEEEeCCCCCch----HHHHHH--HHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCcc
Q 005154 85 YWNKHRINIIDTPGHVDF----TLEVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 157 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df----~~~~~~--~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~ 157 (711)
...++.+.||||||.... ..+... .+...|.+++|+|+..+. ......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 115688999999996543 222211 223479999999998652 12222222221 344 457899999743 2
Q ss_pred HHHHHHHHHHHhCCc
Q 005154 158 FFRTRDMIVTNLGAK 172 (711)
Q Consensus 158 ~~~~~~~l~~~l~~~ 172 (711)
.. ...++...++.+
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455555653
No 241
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.45 E-value=0.00048 Score=71.24 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=58.4
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh------cCCCeE-EEEeccCcCCccHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 159 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~------~~ip~i-vviNK~D~~~~~~~ 159 (711)
..+.+.|||||+.... .+..++..+|.+|+++.+...........++.+.. .+++++ +|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997764 34557778999999999876544444444444433 367755 78999997654445
Q ss_pred HHHHHHHHHhCC
Q 005154 160 RTRDMIVTNLGA 171 (711)
Q Consensus 160 ~~~~~l~~~l~~ 171 (711)
..++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 667778877764
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.36 E-value=0.00066 Score=70.60 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh----cCCCeE-EEEeccCcCCccHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 161 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~----~~ip~i-vviNK~D~~~~~~~~~ 161 (711)
..+.+.|||||+..... .+..++..+|.+|+|+++...-.......++.+.. .+++++ +|+||.+.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35899999999865422 23456788999999998764333334444555544 456655 899999842 34
Q ss_pred HHHHHHHhCCcce
Q 005154 162 RDMIVTNLGAKPL 174 (711)
Q Consensus 162 ~~~l~~~l~~~~~ 174 (711)
.+++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6667777776544
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.34 E-value=0.00069 Score=70.37 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=71.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccc----cchhh-hhhcCceeeeeeEEE-------------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM----DWMEQ-EQERGITITSAATTT------------- 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~----d~~~~-e~~~giti~~~~~~~------------- 84 (711)
+...|+++|+.|+|||||++.|............+.....+. +.... ...+++.+.......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999963321110000111110000 00000 012233221110000
Q ss_pred EecCeeEEEEeCCCCCchH----HHH---HHHHH-----hcCeEEEEEeCCCCCChhHHHHHHHH-HhcCCCeEEEEecc
Q 005154 85 YWNKHRINIIDTPGHVDFT----LEV---ERALR-----VLDGAICLFDSVAGVEPQSETVWRQA-DKYGVPRICFVNKM 151 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df~----~~~---~~~l~-----~~D~~llvvda~~g~~~~t~~~~~~~-~~~~ip~ivviNK~ 151 (711)
...++.+.++||+|..+.. .+. ..++. ..+.+++++|+..+... ...+... ...++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~--~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG--LEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH--HHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH--HHHHHHHHHHcCC-cEEEEECC
Confidence 0134567899999965422 221 11221 24778899999876432 2222333 23344 67889999
Q ss_pred CcCCccHHHHHHHHHHHhCCc
Q 005154 152 DRLGANFFRTRDMIVTNLGAK 172 (711)
Q Consensus 152 D~~~~~~~~~~~~l~~~l~~~ 172 (711)
|.. +.. ..+-.+...++.+
T Consensus 258 d~~-a~g-g~~l~i~~~~~~p 276 (304)
T 1rj9_A 258 DGT-AKG-GVLIPIVRTLKVP 276 (304)
T ss_dssp TSS-CCC-TTHHHHHHHHCCC
T ss_pred ccc-ccc-cHHHHHHHHHCCC
Confidence 865 222 2333555556543
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.34 E-value=0.00042 Score=72.05 Aligned_cols=146 Identities=17% Similarity=0.166 Sum_probs=71.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCC-ccccch-hhhhhcCceeeeeeE----------EE--
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWM-EQEQERGITITSAAT----------TT-- 84 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~-~~~d~~-~~e~~~giti~~~~~----------~~-- 84 (711)
.+...|+++|.+|+||||++..|.... |........+... ...+.. ..-...|+.+..... .+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345789999999999999999996332 2111111111100 000000 001122433321100 00
Q ss_pred -EecCeeEEEEeCCCCCchHHHHH-------HHHH-----hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEec
Q 005154 85 -YWNKHRINIIDTPGHVDFTLEVE-------RALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNK 150 (711)
Q Consensus 85 -~~~~~~i~liDtPG~~df~~~~~-------~~l~-----~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK 150 (711)
...++.+.++||||......... ..+. ..|.+++|+|+..+. ......+...+. .+ .-+|+||
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~-~~i~gvVlTk 258 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEA-VNVTGIILTK 258 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHH-SCCCEEEEEC
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhc-CCCCEEEEeC
Confidence 11467899999999654333221 1221 268899999997431 111112222221 33 3467899
Q ss_pred cCcCCccHHHHHHHHHHHhCCc
Q 005154 151 MDRLGANFFRTRDMIVTNLGAK 172 (711)
Q Consensus 151 ~D~~~~~~~~~~~~l~~~l~~~ 172 (711)
+|.. .... .+.++...++.+
T Consensus 259 ~D~~-~~gG-~~l~~~~~~~~P 278 (306)
T 1vma_A 259 LDGT-AKGG-ITLAIARELGIP 278 (306)
T ss_dssp GGGC-SCTT-HHHHHHHHHCCC
T ss_pred CCCc-cchH-HHHHHHHHHCCC
Confidence 9974 3322 244555555543
No 245
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.34 E-value=0.0011 Score=65.78 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~~~~~l 165 (711)
..+.+.+||||+... ..+..++..+|.+|+|+++...........++.+.+.+.+.+ +|+||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999998665 556778899999999998875444445566666766676654 789999975432 345566
Q ss_pred HHHhCCc
Q 005154 166 VTNLGAK 172 (711)
Q Consensus 166 ~~~l~~~ 172 (711)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 6667654
No 246
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.31 E-value=0.00043 Score=69.29 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=60.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~~~~~~~~l 165 (711)
..+.+.|||||+.... .+..++..+|.+|+|+++...-......+.+.+...+++ +.+|+||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5689999999986654 456678999999999998643334445555666677766 4688999983 2345677
Q ss_pred HHHhCCcceEEEec
Q 005154 166 VTNLGAKPLVVQLP 179 (711)
Q Consensus 166 ~~~l~~~~~~~~~p 179 (711)
.+.++.......+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 77777444444555
No 247
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.29 E-value=0.0013 Score=66.61 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=59.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 165 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~~~~~l 165 (711)
..+.+.|||||+... ..+..++..+|.+|+|+.+...........++.+...+.+.+ +|+|++|..... ..++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHH
Confidence 468899999998765 566778899999999998865444445566666666676655 789999965432 456677
Q ss_pred HHHhCCc
Q 005154 166 VTNLGAK 172 (711)
Q Consensus 166 ~~~l~~~ 172 (711)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7777654
No 248
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.29 E-value=0.001 Score=67.53 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhc--CCCeEEEEeccCcCCccHHHHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDM 164 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~--~ip~ivviNK~D~~~~~~~~~~~~ 164 (711)
..+.+.|||||+... ..+..++..+|.+|+++.+...-......+.+.+... ++++.+|+|+.+.... ..+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~-~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRT-HKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCS-CCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcch-HHHHHHH
Confidence 457899999998765 3467788889999999998653333344555556555 4577899999954432 2334444
Q ss_pred HH
Q 005154 165 IV 166 (711)
Q Consensus 165 l~ 166 (711)
++
T Consensus 220 l~ 221 (267)
T 3k9g_A 220 LK 221 (267)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 249
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.24 E-value=0.0017 Score=56.11 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCC-ceeecceeEEeccCceeecCeeecCCEEEE--eCCC-
Q 005154 321 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG-KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 396 (711)
Q Consensus 321 ~~p~~~~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~-~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 396 (711)
..|....|.++..-=+ |++..|||.+|+|++|+.| +.+ ...+|++|.. ..+++++|.+||.|++ .|..
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcc
Confidence 4566666666333334 8899999999999999999 333 4566777654 2368999999999998 3433
Q ss_pred ccccCccccC
Q 005154 397 DTITGETLCD 406 (711)
Q Consensus 397 ~~~~Gdtl~~ 406 (711)
+++.||+|..
T Consensus 104 ~I~~GdVLyv 113 (116)
T 1xe1_A 104 KVKKGDVLEI 113 (116)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCcEEEE
Confidence 6777887753
No 250
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.22 E-value=0.00013 Score=74.25 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
.+++++|.+|+|||||+|+|+.... ...+.. .|.|....... -+..+++|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~---------------~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQ---------------PGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCCC---------------CCCccceEEEE---eCCCEEEEECCCcccC
Confidence 5899999999999999999972211 111111 13343332221 2357899999998764
No 251
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.18 E-value=0.00065 Score=68.53 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=55.1
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcC---------CCeEEEEeccCcCCccH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG---------VPRICFVNKMDRLGANF 158 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~---------ip~ivviNK~D~~~~~~ 158 (711)
.+.+.|||||+... ..+..++..+|.+|+|+++...-.......++.+...+ .+.-+|+|+.|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999998655 46778889999999999986543334444555554433 35668999998532110
Q ss_pred H--HHHHHHHHHhCCc
Q 005154 159 F--RTRDMIVTNLGAK 172 (711)
Q Consensus 159 ~--~~~~~l~~~l~~~ 172 (711)
. ..++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 1 1135666777654
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.17 E-value=0.00071 Score=70.04 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh----cCCcceeeeecCCC-ccccchh-hhhhcCceeeeeeE--EE-----EecCe
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGT-ATMDWME-QEQERGITITSAAT--TT-----YWNKH 89 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~----~g~~~~~~~~~~g~-~~~d~~~-~e~~~giti~~~~~--~~-----~~~~~ 89 (711)
+...|+++|+.|+||||++..|... .|........+... ...+... .....|+.+..... .+ ...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4578999999999999999999632 23211111111110 0000000 01112222211000 00 12567
Q ss_pred eEEEEeCCCCCchHHHHH----HHHH--hcCeEEEEEeCCCCCChhHHHHHHHHHhc-CCC-eEEEEeccCcCC
Q 005154 90 RINIIDTPGHVDFTLEVE----RALR--VLDGAICLFDSVAGVEPQSETVWRQADKY-GVP-RICFVNKMDRLG 155 (711)
Q Consensus 90 ~i~liDtPG~~df~~~~~----~~l~--~~D~~llvvda~~g~~~~t~~~~~~~~~~-~ip-~ivviNK~D~~~ 155 (711)
.+.|+||||......... ..+. ..|.+++|+|++.+.. .+.+.+... .++ .-+++||+|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 999999999876533322 2222 2577899999986532 122222222 122 246779999753
No 253
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.10 E-value=0.0018 Score=66.88 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc---CCcceeeeecCCCccc-cch-hhhhhcCceeeeee-----EEE--------
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATM-DWM-EQEQERGITITSAA-----TTT-------- 84 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~---g~~~~~~~~~~g~~~~-d~~-~~e~~~giti~~~~-----~~~-------- 84 (711)
+...++++|..|+||||++..|.... +........+...... ... ......|+.+.... ..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999986332 2111111111111000 000 01112243332210 000
Q ss_pred EecCeeEEEEeCCCCCch----HHHHHHHH--HhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCC-eEEEEeccCcCCcc
Q 005154 85 YWNKHRINIIDTPGHVDF----TLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 157 (711)
Q Consensus 85 ~~~~~~i~liDtPG~~df----~~~~~~~l--~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip-~ivviNK~D~~~~~ 157 (711)
...++.+.|+||||.... ..++.... ...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 014689999999986532 22222222 247899999998754 222222222221 244 347899999753 2
Q ss_pred HHHHHHHHHHHhCCc
Q 005154 158 FFRTRDMIVTNLGAK 172 (711)
Q Consensus 158 ~~~~~~~l~~~l~~~ 172 (711)
.. ..-++...++.+
T Consensus 253 ~g-~~~~~~~~~~~p 266 (295)
T 1ls1_A 253 GG-AALSARHVTGKP 266 (295)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCcC
Confidence 22 233444455543
No 254
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.07 E-value=0.00045 Score=71.16 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=52.1
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC----CCChhHHH-------------HH--HHHHh----cC-CC
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVEPQSET-------------VW--RQADK----YG-VP 143 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~----g~~~~t~~-------------~~--~~~~~----~~-ip 143 (711)
.+.+.|||||+.. ...+..++..+|.+|+++.+.. +....... +| +.++. .+ ++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999976 3567788999999999998862 21111111 21 22222 24 66
Q ss_pred eEEEEeccCcCC-ccHHHHHHHHHH---HhCC
Q 005154 144 RICFVNKMDRLG-ANFFRTRDMIVT---NLGA 171 (711)
Q Consensus 144 ~ivviNK~D~~~-~~~~~~~~~l~~---~l~~ 171 (711)
+.+|+|++|... ....+..+.+++ +++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 778999999765 333444444444 3665
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.89 E-value=0.0034 Score=65.04 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=53.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~ 155 (711)
.+.+.|||||+..... ........+|.+|+|+.+............+.+...+++++ +|+|++|...
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 4789999999976543 23345578999999999987777778888888888888876 7899999653
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0057 Score=63.37 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccch-----hhh-hhcCceeeeeeEE-EE--------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQE-QERGITITSAATT-TY-------- 85 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~-----~~e-~~~giti~~~~~~-~~-------- 85 (711)
.+...++++|+.|+|||||+..|...... ..|.+. .|....... ..- ..+++.+...... +.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 34568999999999999999999633210 011110 011010100 000 1234444322211 10
Q ss_pred -----ecCeeEEEEeCCCCCchHHHH-------HHHHH-----hcCeEEEEEeCCCCCChhHHHHHHHHH-hcCCCeEEE
Q 005154 86 -----WNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICF 147 (711)
Q Consensus 86 -----~~~~~i~liDtPG~~df~~~~-------~~~l~-----~~D~~llvvda~~g~~~~t~~~~~~~~-~~~ip~ivv 147 (711)
..+....++||.|..++.... ..++. ..+-+++|+|++.|...... .+... ..++ .+++
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~ii 252 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLI 252 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEE
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEE
Confidence 123457899999976532221 12222 23666899998888766543 22333 3454 4678
Q ss_pred EeccCcC
Q 005154 148 VNKMDRL 154 (711)
Q Consensus 148 iNK~D~~ 154 (711)
++|+|-.
T Consensus 253 iThlD~~ 259 (302)
T 3b9q_A 253 LTKLDGS 259 (302)
T ss_dssp EECCSSC
T ss_pred EeCCCCC
Confidence 8999864
No 257
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.83 E-value=0.004 Score=63.51 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=51.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 155 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~ 155 (711)
.+.+.|||||+..... .....+..+|.+|+|+.+............+.+...+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4789999999976532 33445578899999999987666677777788888888887 8899999654
No 258
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.81 E-value=0.012 Score=58.51 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=56.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCC---CeEEEEeccCcCCccHHHHHHH
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV---PRICFVNKMDRLGANFFRTRDM 164 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~i---p~ivviNK~D~~~~~~~~~~~~ 164 (711)
.+.+.|||||+.... .+..++..+|.+|+++.+...-...+...++.+...+. ..-+|+|+.|..... ..++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~---~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI---TSDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS---CHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC---CHHH
Confidence 578999999987653 45667889999999999875444455566666766653 356889999965432 2356
Q ss_pred HHHHhCCc
Q 005154 165 IVTNLGAK 172 (711)
Q Consensus 165 l~~~l~~~ 172 (711)
+++.++..
T Consensus 193 ~~~~~~~~ 200 (245)
T 3ea0_A 193 IEKVIGRP 200 (245)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCC
Confidence 77777764
No 259
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.80 E-value=0.0033 Score=68.55 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+...|+|+|.+++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45788999999999999999999854
No 260
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.67 E-value=0.006 Score=62.68 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=53.3
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCc
Q 005154 88 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA 156 (711)
Q Consensus 88 ~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~ 156 (711)
.+.+.|||||+..... ......+.+|.+|+|+.+...........++.+...+.+++ +|+||+|....
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 4779999999976543 33445677999999999987666777778888888888876 78999997543
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.60 E-value=0.008 Score=63.67 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeec-CCCccccch-----hh-hhhcCceeeeeeEE-EE--------
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQ-EQERGITITSAATT-TY-------- 85 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~-~g~~~~d~~-----~~-e~~~giti~~~~~~-~~-------- 85 (711)
.+...|+++|+.|+|||||+..|...... ..|.+. .+..+.... .. ...+++.+...... +.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 34578999999999999999999643210 011110 011010000 00 01234433322111 00
Q ss_pred -----ecCeeEEEEeCCCCCchHHH-------HHHHHH-----hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEE
Q 005154 86 -----WNKHRINIIDTPGHVDFTLE-------VERALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFV 148 (711)
Q Consensus 86 -----~~~~~i~liDtPG~~df~~~-------~~~~l~-----~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivvi 148 (711)
..+....++||.|..+.... ...++. ..+-+++|+|++.|....... .......++ .++++
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~-~~~~~~~g~-t~iii 310 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA-REFNEVVGI-TGLIL 310 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH-HHHHHHTCC-CEEEE
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH-HHHHHhcCC-eEEEE
Confidence 12455789999997654222 111221 235679999988877665432 122223344 46789
Q ss_pred eccCcC
Q 005154 149 NKMDRL 154 (711)
Q Consensus 149 NK~D~~ 154 (711)
+|+|-.
T Consensus 311 ThlD~~ 316 (359)
T 2og2_A 311 TKLDGS 316 (359)
T ss_dssp ESCTTC
T ss_pred ecCccc
Confidence 999864
No 262
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.55 E-value=0.0014 Score=68.02 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHhcCeEEEEEeCCCCCChhH--HHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 109 ALRVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~~~~t--~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+..+|.+++|+|+..+..... ...+..+...++|+++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5788899999999997655443 23344455689999999999999764
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.44 E-value=0.015 Score=58.66 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=51.0
Q ss_pred cCeeEEEEeCCCCCchHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh----cCCCe-EEEEeccCcCCccHHH
Q 005154 87 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 160 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~----~~ip~-ivviNK~D~~~~~~~~ 160 (711)
+.+.+.||||||......- .......+|.+|+++.+...-.......++.+.. .+++. -+|+|+.+... ..+
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHH
Confidence 3588999999996432110 1112246899999998864322233333344433 35665 47899987432 245
Q ss_pred HHHHHHHHhCCcc
Q 005154 161 TRDMIVTNLGAKP 173 (711)
Q Consensus 161 ~~~~l~~~l~~~~ 173 (711)
..+.+.+.++...
T Consensus 192 ~~~~l~~~~~~~v 204 (269)
T 1cp2_A 192 LLDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCcc
Confidence 6777877787653
No 264
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.26 E-value=0.02 Score=58.69 Aligned_cols=90 Identities=10% Similarity=-0.065 Sum_probs=52.5
Q ss_pred cCeeEEEEeCCCCCchHHH-HHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh----cCCCe-EEEEeccCcCCccHHH
Q 005154 87 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 160 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~-~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~----~~ip~-ivviNK~D~~~~~~~~ 160 (711)
..+.+.||||||......- .......+|.+|+++.+...-.......++.+.. .+++. -+|+|+.+.. ...+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHH
Confidence 3689999999996421110 1122357899999998764222222233333332 36665 4788998742 2345
Q ss_pred HHHHHHHHhCCcceEEEec
Q 005154 161 TRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 161 ~~~~l~~~l~~~~~~~~~p 179 (711)
..+.+.+.++.... ..+|
T Consensus 195 ~~~~l~~~~g~~~l-~~Ip 212 (289)
T 2afh_E 195 LIIALANKLGTQMI-HFVP 212 (289)
T ss_dssp HHHHHHHHHTSCEE-EEEC
T ss_pred HHHHHHHHcCcccc-ccCC
Confidence 67778777876533 3444
No 265
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.13 E-value=0.04 Score=52.24 Aligned_cols=112 Identities=20% Similarity=0.144 Sum_probs=91.9
Q ss_pred cCCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeeccc
Q 005154 570 AGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFG 649 (711)
Q Consensus 570 ~g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 649 (711)
-+.-+.||.+.+...- -..--..+.+-.|-..+.++|+..|+..-..|...+.|.|+-..+|.|...|.+.. .|.+.+
T Consensus 79 ~~~~l~nv~vVVtRyf-GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~ 156 (191)
T 2cve_A 79 EAQGLDRVAVLVVRYF-GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEET 156 (191)
T ss_dssp HHTTBCSEEEEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEE
T ss_pred HHcCCCcEEEEEEEEe-CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccE
Confidence 3566888888887521 11123345566788888999999999999999999999999999999999999998 998888
Q ss_pred cCCCCeEEEEEEechhHHhhhHHHhhhccCceEEE
Q 005154 650 DKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASY 684 (711)
Q Consensus 650 ~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~ 684 (711)
... .-+.+...+|..+.-.|...|..+|+|++.+
T Consensus 157 y~~-~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 157 YTP-EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EET-TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EcC-CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 754 2288899999999999999999999999754
No 266
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=95.84 E-value=0.064 Score=52.94 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=59.2
Q ss_pred cCeeEEEEeCCCCC-----chHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHH
Q 005154 87 NKHRINIIDTPGHV-----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 160 (711)
Q Consensus 87 ~~~~i~liDtPG~~-----df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~ 160 (711)
..+.+.+||+||.. +.......+-....-+|+|+++..+-...+...++.+...++++. +|+|++|........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999999732 111112222223356899999987766666666777778899986 789999865444566
Q ss_pred HHHHHHHHhCCcc
Q 005154 161 TRDMIVTNLGAKP 173 (711)
Q Consensus 161 ~~~~l~~~l~~~~ 173 (711)
..+.+++.++...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7888888887653
No 267
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.76 E-value=0.15 Score=53.78 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=47.6
Q ss_pred cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCc----------cHHHHHHHHHHHhCCcceEEEecc
Q 005154 113 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 113 ~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~----------~~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
.+++++|.-+..-....++..+..+.+.++|+. +|+|++..... .....++++.+.++..+ ...+|+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 378899988876666677888899999999996 78999986532 13456667777776433 344554
No 268
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.67 E-value=0.029 Score=54.27 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=93.2
Q ss_pred CCCeeEEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeceeEEEEEeCccchhHHHHHHhcCCceeecccc
Q 005154 571 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGD 650 (711)
Q Consensus 571 g~pv~~v~~~l~~~~~~~~~s~~~~~~~a~~~~~~~a~~~a~~~llEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~ 650 (711)
+.-+.||.+.+...- -..-.-++.+-.|-..+.++|+.+|+..-..|...+.|.|+-..+|.|...|.+..+.|.+.+.
T Consensus 92 ~~~l~nv~vVVtRyf-GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y 170 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY-GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDY 170 (217)
T ss_dssp HHTCCSEEEECCEEC-CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred HcCCCCEEEEEEEEe-CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEe
Confidence 446788888886421 1123345666778888999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEEEechhHHhhhHHHhhhccCceEEE
Q 005154 651 KPGGLKVVDALVPLAEMFQYVSALRGMTKGRASY 684 (711)
Q Consensus 651 ~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~ 684 (711)
. +.+.+...+|..+.-.|...|..+|+|++.+
T Consensus 171 ~--~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 171 Q--AFVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp S--SSEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred c--CCEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 4 3488899999999999999999999999844
No 269
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.45 E-value=0.031 Score=59.07 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHhcCeEEEEEeCCCCCChh--HHHHHHHHHhcCCCeEEEEeccCcCCc
Q 005154 109 ALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKMDRLGA 156 (711)
Q Consensus 109 ~l~~~D~~llvvda~~g~~~~--t~~~~~~~~~~~ip~ivviNK~D~~~~ 156 (711)
.+.++|.+++| |+..+.... ....+..+...++|+++|+||+|+...
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc
Confidence 35778999876 555432221 223334455689999999999999764
No 270
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=95.45 E-value=0.022 Score=47.81 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred EEEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCce---eecceeEEeccCceeecCeeecCCEEEE--eCCCccccC
Q 005154 327 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 401 (711)
Q Consensus 327 ~V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~G 401 (711)
-|-.++..+..|.+|-++|.+|+++.+..+.+.+++.. -++.+|..+. ..+.++.+|.=|+| .+.++++.|
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~dik~G 85 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDIKEG 85 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSCSSC
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCCCCC
Confidence 44455555677999999999999999999999888743 3566665443 67999999999999 355678999
Q ss_pred cccc
Q 005154 402 ETLC 405 (711)
Q Consensus 402 dtl~ 405 (711)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9874
No 271
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.36 E-value=0.026 Score=60.74 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=55.7
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-------hhHHHHHHHHHhcC--CCe---EEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYG--VPR---ICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-------~~t~~~~~~~~~~~--ip~---ivviNK~D~~ 154 (711)
+.+.+.|||||..... .+..++..+|.+|+|+.+..-.. ......++.+.+.+ .++ +.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 4688999999987753 46678889999999998753211 11122334444443 332 4577887742
Q ss_pred CccHHHHHHHHHHHhCCcceEEEec
Q 005154 155 GANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 155 ~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
..-....+.+.+.++...++..+|
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred -hhHHHHHHHHHHHhcccccceecc
Confidence 223456777888887654434444
No 272
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.33 E-value=0.048 Score=56.74 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+++.++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4788999999999999999999843
No 273
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.20 E-value=0.24 Score=51.46 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=46.2
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCc----------cHHHHHHHHHHHhCCcceEEEecc
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~----------~~~~~~~~l~~~l~~~~~~~~~p~ 180 (711)
+++++|.-+..-....++..+..+.+.++|+. +|+|++..... ...+.++++.+.++..+ ...+|+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl 299 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPL 299 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 58899988876556677888899999999996 78999986531 13456667777776432 234553
No 274
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.20 E-value=0.0052 Score=63.67 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++++|++|+|||||+|+|+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 4689999999999999999994
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.02 E-value=0.025 Score=58.44 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..++++|++|+|||||+|+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 678999999999999999996
No 276
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.96 E-value=0.53 Score=46.98 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=51.7
Q ss_pred cCeeEEEEeCCCCC-----ch-HHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcC-CccH
Q 005154 87 NKHRINIIDTPGHV-----DF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL-GANF 158 (711)
Q Consensus 87 ~~~~i~liDtPG~~-----df-~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~-~~~~ 158 (711)
..+.+.+||+||-. +. ......+-....-+|+|+|+..+....+...++.+...++++. +|+||+... ....
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~ 204 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVA 204 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhh
Confidence 35789999999743 11 1122223334577899999987766666666777778899987 678998532 2112
Q ss_pred HHHHHHHHHH
Q 005154 159 FRTRDMIVTN 168 (711)
Q Consensus 159 ~~~~~~l~~~ 168 (711)
....+.+++.
T Consensus 205 ~~~~~~le~~ 214 (251)
T 3fgn_A 205 ASNRSALARI 214 (251)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 3445556554
No 277
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.80 E-value=0.024 Score=62.51 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEEeCCCCCch
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 102 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDtPG~~df 102 (711)
....|.++|.+|+||||+..+|....+........ ...|....+ ..|. .....++|+.|...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~----~~~d~~r~~-~~g~------------~~~~~ifd~~g~~~~ 100 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE----FNVGQYRRD-MVKT------------YKSFEFFLPDNEEGL 100 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE----EEHHHHHHH-HHCS------------CCCGGGGCTTCHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE----Eecchhhhh-hccC------------CCcccccCCCCHHHH
Confidence 34689999999999999999996443210000000 000101111 1111 012346788886322
Q ss_pred --HHHH--------HHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEE
Q 005154 103 --TLEV--------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICF 147 (711)
Q Consensus 103 --~~~~--------~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivv 147 (711)
...+ ..++..+++.++|+|++..-..+...+...+.+.+.+++++
T Consensus 101 r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 101 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2222 34455578889999998764444444455566667665544
No 278
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.71 E-value=0.11 Score=56.30 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=60.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcCCc---ceeeee---cCCCccccchhhhhhcCceeeeeeEEEEe---cCeeE
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRN---YKIGEV---HEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 91 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~---~~~~~~---~~g~~~~d~~~~e~~~giti~~~~~~~~~---~~~~i 91 (711)
.+++..|+|+|..++|||+|+|.|+...+.. .-.+.. ..|-.+.. ...-..+||-+-+....+.. .+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC-CCCCcCceEEEecCcccccCCCCCeeEE
Confidence 3458899999999999999999886432100 000000 00100000 01112346655554444433 23579
Q ss_pred EEEeCCCCCchH-----HHHHHHHH--hcCeEEEEEeCCCCCChhHHHHHHHH
Q 005154 92 NIIDTPGHVDFT-----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQA 137 (711)
Q Consensus 92 ~liDtPG~~df~-----~~~~~~l~--~~D~~llvvda~~g~~~~t~~~~~~~ 137 (711)
.|+||.|..|-. ...+.++. .++..|+ .....+..+....+...
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~Iy--N~~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQLF 193 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEE--EEESSCCHHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheee--cccccCCHHHHHHHHHH
Confidence 999999976531 22333343 4566554 44445565555555443
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.53 E-value=0.071 Score=57.73 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+...|.++|.+|+||||++..|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34577899999999999999999643
No 280
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.44 E-value=0.087 Score=45.74 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=56.1
Q ss_pred EEEEEeecCCCCe---EEEEEEEeeEeCCCCEEEeCCCCce---eecceeEEeccCceeecCeeecCCEEEE--eCCC-c
Q 005154 327 LAFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-D 397 (711)
Q Consensus 327 ~V~k~~~~~~~g~---l~~~RV~sG~l~~gd~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-~ 397 (711)
.||++ +..|. +|-++|.+|+++++..+.+.+++.. -++.+|..+. ..|.++.+|.=|+| .+.+ +
T Consensus 17 ~vF~i---sk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfK----dDVkEV~~G~ECGi~l~~fniD 89 (120)
T 2crv_A 17 ATFTV---TEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHK----DDISVIKTGMDCGLSLDEEKVE 89 (120)
T ss_dssp EEEEE---EETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSS----SCCSEECTTCEEEEECSCTTSC
T ss_pred EEEEe---CCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccc----cccceecCCCEEEEEEccCCCC
Confidence 45554 44576 9999999999999999998887743 3566655443 67999999999999 4567 7
Q ss_pred cccCcccc
Q 005154 398 TITGETLC 405 (711)
Q Consensus 398 ~~~Gdtl~ 405 (711)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 88999884
No 281
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.32 E-value=0.2 Score=48.64 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=60.2
Q ss_pred cCeeEEEEeCCCCCch--H--HHHHHHHHh-cCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCccHHH
Q 005154 87 NKHRINIIDTPGHVDF--T--LEVERALRV-LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 160 (711)
Q Consensus 87 ~~~~i~liDtPG~~df--~--~~~~~~l~~-~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~~~~~ 160 (711)
+.+.+.||||||...- . ......+.. .+.+|+|+++..+...+....++.+...+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 4689999999976531 0 011122222 245888888865444455556666677788876 789999975444567
Q ss_pred HHHHHHHHhCCcceEEEeccCC
Q 005154 161 TRDMIVTNLGAKPLVVQLPVGA 182 (711)
Q Consensus 161 ~~~~l~~~l~~~~~~~~~p~~~ 182 (711)
..+.+.+.++.... -.+|...
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~~ 207 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWLA 207 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCCT
T ss_pred HHHHHHHHcCCCEE-EECCCCc
Confidence 77888888876544 3466443
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.026 Score=53.38 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+.++|+|++|+|||||++.|...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999999754
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.03 E-value=0.028 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+++|+|++|+|||||++.|....
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997444
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.01 E-value=0.024 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+.++|+|++|+|||||++.|+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999999974
No 285
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.99 E-value=0.033 Score=53.66 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 19 IPLKDYRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 19 ~~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.++.+.+.|+|+|++|+|||||+++|+...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 344557889999999999999999998554
No 286
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.82 E-value=0.35 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...|+++|.+|+||||++..|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999963
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.66 E-value=0.052 Score=50.74 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+...|+++|.+|+||||+++.|....|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 357899999999999999999975444
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.52 E-value=0.044 Score=53.08 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
++...|+|+|++|+|||||++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999996
No 289
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.48 E-value=0.66 Score=48.41 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=41.0
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC---cc---------HHHHHHHHHHHhCC
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG---AN---------FFRTRDMIVTNLGA 171 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~---~~---------~~~~~~~l~~~l~~ 171 (711)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.-+. .+ .++.++++.+.++.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~ 293 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE 293 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC
Confidence 47888887765555667788899999999996 7899987421 11 24566677777754
No 290
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.40 E-value=0.034 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHh
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+.++|+|+.|+|||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999743
No 291
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.34 E-value=0.73 Score=47.96 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCc-----------cHHHHHHHHHHHhCCcceEEEec
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~-----------~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
+.+++|..+.......+...+..+...++|+. +|+|++..... ...+.++++.+.++..++ ..+|
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP 298 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVP 298 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEE
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEec
Confidence 47888888776555677888888999999986 78999983211 123455667777654322 3455
No 292
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=93.31 E-value=0.046 Score=43.84 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=54.5
Q ss_pred eEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEE
Q 005154 620 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRAS 683 (711)
Q Consensus 620 ~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~ 683 (711)
-+..+.|+-..+|+|...|.+..+.|.+.+.. ..+.+...+|..+.-.|...|..+|+|++.
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~--~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~ 69 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ--AFVLLRVALPAAKVAEFSAKLADFSGGSLQ 69 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE--EEEEEEEEECC-CC-CHHHHHHHHHTTCCC
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc--CeEEEEEEECHHHHHHHHHHHHHHhCCEEE
Confidence 35788999999999999999999999999984 459999999999999999999999999973
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.19 E-value=0.052 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...++|+|++|||||||++.|...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999754
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.18 E-value=0.053 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...|+++|++|+|||||++.|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999995
No 295
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.98 E-value=0.054 Score=52.41 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+...++|+|+.|||||||++.|...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999633
No 296
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.98 E-value=0.3 Score=55.33 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcC
Q 005154 115 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 154 (711)
Q Consensus 115 ~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~ 154 (711)
.+++|+.+.......+...++.+...+++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6899998876555667778888888888875 779999864
No 297
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.97 E-value=0.51 Score=45.35 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...++|+|++|+|||||+..|..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.77 E-value=0.065 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.057 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+.|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5679999999999999999997543
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.69 E-value=0.063 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+|+|+|.+|+|||||++.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965444
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.60 E-value=0.065 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...|+|+|+.|+|||||++.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999963
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.58 E-value=0.072 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|+|+|.+|+||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47899999999999999999 5555
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.58 E-value=0.058 Score=50.50 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++++|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4578999999999999999863
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.58 E-value=0.071 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+.++|+|.+|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999743
No 304
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.57 E-value=1.3 Score=46.47 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=40.3
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCC-c----c--------HHHHHHHHHHHhC
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-A----N--------FFRTRDMIVTNLG 170 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~-~----~--------~~~~~~~l~~~l~ 170 (711)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.... . . ..+.++++.+.++
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~ 302 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE 302 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc
Confidence 57888887765555667788888999999985 7899997643 1 1 2345666676664
No 305
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.56 E-value=0.069 Score=49.46 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|+|+|.+|+||||+++.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999975544
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.54 E-value=0.069 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+.+.++|+|.+|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999974
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.53 E-value=0.058 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...++|+|++|+|||||++.|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999999974
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.48 E-value=0.071 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...++|+|+.|+|||||++.|+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999744
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.46 E-value=0.08 Score=50.81 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGR 50 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~ 50 (711)
...|+|+|.+|+|||||++.|....|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 568999999999999999999755443
No 310
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.40 E-value=0.34 Score=48.32 Aligned_cols=29 Identities=24% Similarity=-0.033 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+...|.++|.+|+||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457899999999999999999975544
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.40 E-value=0.11 Score=49.71 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=25.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+.+.+.|+|.|.+|+||||++..|....|
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345568899999999999999999976555
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.26 E-value=0.077 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...|+|+|++|+|||||++.|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 313
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.10 E-value=0.094 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+...++++|+.|+|||||++.|...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999643
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.09 E-value=0.09 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44678999999999999999999754
No 315
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.08 E-value=0.2 Score=56.73 Aligned_cols=60 Identities=3% Similarity=-0.009 Sum_probs=41.3
Q ss_pred hcCeEEEEEeCCCCCChhHHHHHHHHHhcCCCeE-EEEeccCcCCc-----------cHHHHHHHHHHHhCC
Q 005154 112 VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGA 171 (711)
Q Consensus 112 ~~D~~llvvda~~g~~~~t~~~~~~~~~~~ip~i-vviNK~D~~~~-----------~~~~~~~~l~~~l~~ 171 (711)
.+|.+++|+.+.......+...+..+.+.+++.. +|+|+++.... ...+.++++++.++.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 560 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHAS 560 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4589999988765555566777888888898874 78999986421 123455666666654
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.04 E-value=0.11 Score=52.32 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...++|+|+.|+|||||++.|.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999994
No 317
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.92 E-value=0.8 Score=46.72 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
..++.+.|++|+|||||+.++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 458999999999999999999644
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.86 E-value=0.1 Score=50.03 Aligned_cols=27 Identities=22% Similarity=0.098 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+..+|+|+|.+|+||||+...|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999975544
No 319
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.79 E-value=0.084 Score=55.68 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..++++|++|+|||||+|.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 478999999999999999996
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.78 E-value=0.13 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+.++|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999754
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.75 E-value=0.085 Score=50.79 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+.|+|+|.+|+|||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5678999999999999999998654
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.75 E-value=0.089 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 448899999999999999998653
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.65 E-value=0.095 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
..++++|++|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999963
No 324
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.63 E-value=0.23 Score=51.34 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHh
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999754
No 325
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.61 E-value=0.088 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.+.-.++|+|+.|||||||++.|.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 345679999999999999999993
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.60 E-value=0.1 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+.|+|+|.+|+||||+++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975544
No 327
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.57 E-value=0.11 Score=51.67 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRN 51 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~ 51 (711)
...|+|+|.+|+|||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3589999999999999999997555643
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.55 E-value=0.12 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.+...|+|+|++|+|||||++.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 456789999999999999999995
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.54 E-value=0.051 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..++|+|.+|+|||||++.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.47 E-value=0.13 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999963
No 331
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=91.41 E-value=0.26 Score=52.96 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=54.9
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCC-------hhHHHHHHHHHhcCCC-----eEEEEeccCcC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-----RICFVNKMDRL 154 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~-------~~t~~~~~~~~~~~ip-----~ivviNK~D~~ 154 (711)
+.+.+.|||||+... ..+..++..+|.+|+|+.+..-.. ......++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 457899999998776 456778889999999998752111 1222344445554433 3558999983
Q ss_pred CccHHHHHHHHHHHhCCcceEEEec
Q 005154 155 GANFFRTRDMIVTNLGAKPLVVQLP 179 (711)
Q Consensus 155 ~~~~~~~~~~l~~~l~~~~~~~~~p 179 (711)
...-....+.+.+.++...+...+|
T Consensus 323 ~~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 323 KRDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp CHHHHHHHHHHHHHHTTSEECCC--
T ss_pred chhHHHHHHHHHHHhhHhhhceeCC
Confidence 2223456677888888765444455
No 332
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.40 E-value=0.099 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999993
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.40 E-value=0.1 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999995
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.35 E-value=0.11 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+.|+++|.+|+||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 335
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.35 E-value=0.35 Score=43.60 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
..+|.|.|.+|+|||+++.++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.29 E-value=0.11 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..|+|+|.+|+||||+++.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965444
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.29 E-value=0.16 Score=49.60 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhcCC
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGR 50 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g~ 50 (711)
...+.+.|.|+|+|||||+|.+..|....|.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3455678899999999999999999866653
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.26 E-value=0.1 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+|+|+|.+|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999964
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.24 E-value=0.14 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999993
No 340
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.24 E-value=0.12 Score=50.40 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
..+++.|.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999643
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.14 E-value=0.14 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.++|+++|.+|+||||++..|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999975444
No 342
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.13 E-value=0.12 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 343
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.12 E-value=0.11 Score=53.46 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+...++|+|++|+|||||++.|+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3457899999999999999999973
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.11 E-value=0.14 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|+++|.+|+||||+...|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
No 345
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.07 E-value=0.55 Score=51.79 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred EEEEeecCCCCeEEEEEEEeeEeCCCCEEEeCCCCce---eecceeEEeccCceeecCeeecCCEEEE--eCCCccccCc
Q 005154 328 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 402 (711)
Q Consensus 328 V~k~~~~~~~g~l~~~RV~sG~l~~gd~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 402 (711)
|-.++..+..|.++-++|..|++++|..+.+.+.+.. -++.+|..+ ..+++++..|.=|+| .+..+++.||
T Consensus 413 v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~----k~~v~e~~~g~ecgi~~~~~~~~~~gd 488 (501)
T 1zo1_I 413 VRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRF----KDDVNEVRNGMECGIGVKNYNDVRTGD 488 (501)
T ss_dssp EEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEET----TEEESEEETTCCEEEEBCCCTTCCTTC
T ss_pred EEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhccc----CccccEECCCCEEEEEEcCcCCCCCCC
Confidence 4455555667999999999999999999999887753 355555443 378999999999998 4556789999
Q ss_pred cccC
Q 005154 403 TLCD 406 (711)
Q Consensus 403 tl~~ 406 (711)
+|-.
T Consensus 489 ~~~~ 492 (501)
T 1zo1_I 489 VIEV 492 (501)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 346
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.06 E-value=0.13 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.|+|+|.+|+||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999975544
No 347
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.02 E-value=0.13 Score=49.29 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...|+|+|.+|+|||||...|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999963
No 348
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.99 E-value=0.14 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...++|+|++|+|||||++.|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 45789999999999999999996
No 349
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.91 E-value=0.13 Score=51.19 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
-.++|+|+.|+|||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 678999999999999999994
No 350
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.84 E-value=0.11 Score=50.51 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
-.++|+|+.|+|||||++.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999996
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.84 E-value=0.16 Score=50.73 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+...|+|.|.+|+||||+.+.|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999975444
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.82 E-value=0.15 Score=53.00 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
..+...|+|+|.+|+|||||++.|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999643
No 353
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.82 E-value=1.3 Score=46.76 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=28.6
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCC
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA 124 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~ 124 (711)
..+.+.+||||.... ..+...+..+|.+++|+.+..
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCCc
Confidence 467899999995443 467778899999999998753
No 354
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.79 E-value=0.13 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
+.|+|.|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997543
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.77 E-value=0.16 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+...|+|+|.+|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999864
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.76 E-value=0.16 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|.++|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975444
No 357
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.69 E-value=0.58 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...+.|.|++|+|||||+..+...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999744
No 358
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.69 E-value=0.12 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|||||||++.|.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34678999999999999999993
No 359
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.67 E-value=0.23 Score=53.04 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeee
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV 57 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~ 57 (711)
.-.++|+|+.|+|||||++.|. |.....|.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~ia---Gl~~~~G~I 77 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFL---RLLNTEGEI 77 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH---TCSEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHh---CCCCCCeEE
Confidence 4578999999999999999994 554444544
No 360
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.64 E-value=0.16 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999975544
No 361
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.63 E-value=0.13 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++|+|+.|+|||||++.|.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999994
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.60 E-value=0.097 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=16.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...++|+|++|+|||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999996
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.58 E-value=0.15 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+|+|+|.+|+||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975554
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.58 E-value=0.15 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975554
No 365
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.54 E-value=0.13 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCCc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGRN 51 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~~ 51 (711)
.-.++|+|+.|||||||++.| +|..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l---~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNF---NGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCCHHHHHHHH---HcCC
Confidence 456899999999999999999 4544
No 366
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.54 E-value=0.13 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999993
No 367
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.52 E-value=0.17 Score=47.78 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|+++|.+|+||||+...|....|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999975544
No 368
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.52 E-value=0.14 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999995
No 369
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.48 E-value=0.13 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999993
No 370
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.48 E-value=0.16 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..-.++|+|+.|+|||||++.|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999999993
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.46 E-value=0.17 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.010 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+...|+|+|.+|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999863
No 372
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.45 E-value=0.13 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999993
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.45 E-value=0.14 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.++|+|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999964
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.44 E-value=0.15 Score=50.65 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999993
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.42 E-value=0.18 Score=50.10 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+...|+|+|+.|+|||||++.|....|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999964334
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.41 E-value=0.17 Score=47.82 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+.|+|+|.+|+||||++..|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.39 E-value=0.17 Score=49.25 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+..+|+++|.+|+||||+...|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999975544
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.33 E-value=0.17 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+...|+|+|+.|+|||||++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999963
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.27 E-value=0.15 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...++|+|++|+|||||+..|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35679999999999999999886
No 380
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.26 E-value=0.14 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999993
No 381
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.24 E-value=0.16 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999993
No 382
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.23 E-value=0.13 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++++|++|+|||||+.++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999996
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.18 E-value=0.19 Score=50.19 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcCC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTGR 50 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g~ 50 (711)
...|+|+|++|+|||||++.|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999755453
No 384
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.15 E-value=1.3 Score=49.24 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+.+.+.|++|+|||||+.++....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999976554
No 385
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.06 E-value=0.16 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999975444
No 386
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.05 E-value=0.16 Score=47.83 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
..|+|.|.+|+||||+++.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997543
No 387
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.01 E-value=0.16 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999995
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.01 E-value=0.19 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+.|+|.|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 389
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.97 E-value=0.17 Score=51.04 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Confidence 45678999999999999999993
No 390
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.96 E-value=0.2 Score=47.93 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+.|+|.|.+|+||||+++.|....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36799999999999999999975444
No 391
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.96 E-value=0.16 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999993
No 392
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.87 E-value=0.97 Score=46.81 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.++|.|.|++|+|||+|+.++....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5679999999999999999996443
No 393
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.87 E-value=0.15 Score=49.53 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++|+|++|+|||||+..|.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999996
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.82 E-value=0.23 Score=47.47 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+...|+|+|.+|+||||++..|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446899999999999999999975544
No 395
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.78 E-value=0.16 Score=52.37 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..++++|++|+|||||+++|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 578999999999999999994
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.75 E-value=0.16 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|.+.|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999975544
No 397
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.72 E-value=0.23 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.--+.|.|.+|+|||||+-.+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 456889999999999999988644
No 398
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=89.70 E-value=1.1 Score=49.73 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEEEEEEeecC---CCCeEEEEEEEeeEeCCCCEEEeCCCCceeecceeEEeccCceeecCeeecCCEEEEe--C-CCcc
Q 005154 325 AGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--G-LKDT 398 (711)
Q Consensus 325 ~~~V~k~~~~~---~~g~l~~~RV~sG~l~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--g-l~~~ 398 (711)
.+-|-+++..+ ..|.++-++|.+|+++++..+.+.+.+.....++|-.+. +....++++..|.=|+|. + ..++
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~~ 527 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIEF 527 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccCC
Confidence 34455555443 257899999999999999999998877644444444444 334789999999999993 4 5578
Q ss_pred ccCccc
Q 005154 399 ITGETL 404 (711)
Q Consensus 399 ~~Gdtl 404 (711)
+.||+|
T Consensus 528 ~~gd~i 533 (537)
T 3izy_P 528 KVGDAI 533 (537)
T ss_dssp SCCCEE
T ss_pred CCCCEE
Confidence 999987
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.68 E-value=0.19 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+.|+|.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.67 E-value=0.21 Score=48.88 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|+|+|.+|+||||++..|....|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975554
No 401
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.67 E-value=0.26 Score=46.35 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.+.|+++|.+|+||||++..|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999975544
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.64 E-value=0.24 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999993
No 403
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.63 E-value=0.17 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.012 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999993
No 404
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.62 E-value=0.17 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 35679999999999999999993
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.53 E-value=0.21 Score=46.14 Aligned_cols=27 Identities=7% Similarity=0.258 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...||+|.|.+|+||||+...|....|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999965444
No 406
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.51 E-value=0.61 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...+.|.|++|+|||||+..+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998874
No 407
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.50 E-value=0.16 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...++++|++|+|||||+..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999963
No 408
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.45 E-value=0.24 Score=49.17 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+..+|+|+|.+|+||||++..|....|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999975555
No 409
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.45 E-value=0.18 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999993
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.40 E-value=0.19 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=23.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHH
Q 005154 20 PLKDYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 20 ~~~~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+..+...|+|.|..|+|||||++.|..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 445568899999999999999999853
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.38 E-value=0.21 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|+|+|.+|+||||++..|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976544
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.35 E-value=0.2 Score=50.79 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999993
No 413
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.31 E-value=2 Score=42.90 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...+++.+.|++|+|||+|+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999999999999643
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.30 E-value=0.23 Score=45.76 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+|+|.|.+|+||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975444
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.28 E-value=0.23 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999953
No 416
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.25 E-value=0.16 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..+++|+|++|+|||||++.|+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999996
No 417
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.19 E-value=0.21 Score=48.00 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...|+|.|.+|+||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.13 E-value=0.19 Score=47.22 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
++|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999975544
No 419
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.08 E-value=0.85 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999743
No 420
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.02 E-value=0.21 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.|++.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 421
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.99 E-value=1.3 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.++|.|.|++|+|||||+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.95 E-value=0.23 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|+|+|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999975554
No 423
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.91 E-value=0.63 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+++.+.|++|+|||||+..+..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 424
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.90 E-value=0.79 Score=45.19 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=54.4
Q ss_pred eeceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEE
Q 005154 616 LEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 685 (711)
Q Consensus 616 lEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~ 685 (711)
----|++.|.+|.++.+++++.|.+- |.|.+++..+++.....+.+|-.---.|.+.|++.|+|+|.+.
T Consensus 181 ~ra~m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 181 KFEKVRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EECEEEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eEeeEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 33458899999999999999999654 7888777654344566778998766678889999999998664
No 425
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.89 E-value=0.25 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999963
No 426
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.77 E-value=0.22 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.|+|+|++|+|||||+++|+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999996
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.71 E-value=0.23 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|+|.|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975444
No 428
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.69 E-value=0.27 Score=50.22 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+...|.++|.+|+||||++..|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997544
No 429
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.57 E-value=0.27 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999976554
No 430
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.52 E-value=0.23 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|||||||++.|.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHh
Confidence 45678999999999999999994
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.46 E-value=0.26 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+|+|.|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975544
No 432
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.43 E-value=0.29 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.+...|+|+|.+|+||||+++.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999996
No 433
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.42 E-value=0.28 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 567999999999999999975443
No 434
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.27 E-value=0.18 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..+++|+|++|+|||||++.|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999995
No 435
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.16 E-value=0.27 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
....++|+|++|+|||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999973
No 436
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.14 E-value=0.26 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++|+|+.|+|||||++.|.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999993
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.14 E-value=0.32 Score=47.81 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+..+|+++|.+|+||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999975544
No 438
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.13 E-value=0.17 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++|+|+.|+|||||++.|+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 4579999999999999999994
No 439
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.10 E-value=0.95 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...+.|.|.+|+|||||+-.+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 457889999999999999998744
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.10 E-value=0.28 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...|+++|.+|+||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.09 E-value=0.3 Score=47.29 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTGR 50 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g~ 50 (711)
+|.++|+|||||+|.+..|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6889999999999999999866664
No 442
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.07 E-value=0.97 Score=47.58 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+.+.+.|.|.+|+|||||+-.+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998743
No 443
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.96 E-value=0.24 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHh
Confidence 34578999999999999999994
No 444
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.74 E-value=0.13 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHh
Q 005154 26 NIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999643
No 445
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.73 E-value=0.26 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 005154 26 NIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
-|++.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 446
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.67 E-value=0.3 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..+++|+|++|||||||+++|+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 447
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.56 E-value=0.3 Score=48.81 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+|+|+|.+|+||||+.+.|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999965444
No 448
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.46 E-value=1 Score=45.95 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
....++.+.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999988633
No 449
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.45 E-value=0.27 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999994
No 450
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.30 E-value=0.28 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHH
Confidence 35678999999999999999994
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.27 E-value=0.35 Score=46.22 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
....|+++|.+||||||+.+.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999965434
No 452
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.26 E-value=0.26 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...++|+|+.|+|||||++.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999963
No 453
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.24 E-value=0.4 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.+++.+.|++|+|||||+.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999643
No 454
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.22 E-value=0.34 Score=47.02 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+|+++|.+|+||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999975554
No 455
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.11 E-value=0.3 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHh
Confidence 35678999999999999999994
No 456
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.09 E-value=0.3 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHH
Confidence 34578999999999999999994
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.98 E-value=0.37 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.|+|.|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975544
No 458
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.96 E-value=0.36 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHh
Q 005154 26 NIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999753
No 459
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.88 E-value=0.3 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
.-.++|+|+.|+|||||++.|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 4578999999999999999994
No 460
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.84 E-value=0.31 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHH
Confidence 35678999999999999999994
No 461
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.78 E-value=0.37 Score=48.77 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+.++++|++|+|||||+++|....+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4499999999999999999974433
No 462
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.74 E-value=0.39 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
+.++++|++|+|||||++++....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999997443
No 463
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.72 E-value=2.7 Score=45.63 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..++.+.|++|+|||||+..+....+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 47899999999999999999975543
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.66 E-value=0.43 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 21 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 21 ~~~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+...|+|+|.+|+||||+...|....|
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999975444
No 465
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.64 E-value=0.41 Score=46.12 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...|+++|.+|+||||++..|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999963
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.43 E-value=2.3 Score=41.55 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
..||.+.|.+|+||||++-.+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999977775
No 467
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.41 E-value=0.38 Score=46.66 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
...++|+|++|+|||||+..|.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999996
No 468
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.39 E-value=0.41 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.-.|+|+|+.|+|||||+++|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999743
No 469
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.39 E-value=1.8 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
+.++|.+.|++|+|||+|+-++...+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999997543
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.32 E-value=1.1 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.022 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
.--+.|.|.||+|||||+-.+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Confidence 456889999999999999988744
No 471
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.21 E-value=0.44 Score=47.01 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
...|+|.|++|+||||+++.|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.10 E-value=0.74 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...|.++|.+|+||||+...|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999644
No 473
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=86.03 E-value=1 Score=44.08 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=53.1
Q ss_pred ceeEEEEEeCccchhHHHHHHhcCCceeeccccCCCCeEEEEEEechhHHhhhHHHhhhccCceEEEEE
Q 005154 618 PIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIM 686 (711)
Q Consensus 618 Pi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~ 686 (711)
--|++.|.+|.++.+++++.|.+ -|.|..++..+++.....+.+|-.---.+.+.|++.|+|.|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 35788999999999999999955 467877776543445567789987666788889999999997654
No 474
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.95 E-value=2.2 Score=42.33 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
..+|.|.|.+|+|||+|+.++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3689999999999999999997544
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.74 E-value=0.55 Score=46.14 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
+...|+|.|.+|+||||+++.|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999975443
No 476
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.53 E-value=0.58 Score=51.78 Aligned_cols=26 Identities=8% Similarity=-0.155 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
+..-+.|.|.+|+|||||+-.+....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34568899999999999999987543
No 477
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.49 E-value=0.27 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 34578999999999999999994
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.46 E-value=2.3 Score=41.52 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
...+.|.|.+|+|||+|+-.++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999888643
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.39 E-value=0.5 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 26 NIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999975444
No 480
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.37 E-value=1.4 Score=43.13 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhcCCCeEEEEeccCcCC
Q 005154 114 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 155 (711)
Q Consensus 114 D~~llvvda~~g~~~~t~~~~~~~~~~~ip~ivviNK~D~~~ 155 (711)
+.-+++||-..-+.....+.++.+...++|++++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 355778897765554444455555557999999998888654
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.36 E-value=4.1 Score=47.34 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhcCCcceeeeecCCCccccchhhhhhcCceeeeeeEEEEecCeeEEEE-eCCCCCc
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINII-DTPGHVD 101 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~~g~~~~~~~~~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~li-DtPG~~d 101 (711)
...++.+.|++|+|||+|+.+|....+. ....++- ..+++.+ ++. .++ ..||+..
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~--~~~~i~~-s~~~~~~--------~~~-------------~l~g~~~g~~g 542 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM-SEYMERH--------TVS-------------RLIGAPPGYVG 542 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG-GGCSSSS--------CCS-------------SSCCCCSCSHH
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcC--CEEEEec-hhhcchh--------hHh-------------hhcCCCCCCcC
Confidence 3568999999999999999999755531 1111110 0000000 000 001 1245433
Q ss_pred hH--HHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh
Q 005154 102 FT--LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 139 (711)
Q Consensus 102 f~--~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~ 139 (711)
+. ......++.+...++++|=.+...+.....+.++..
T Consensus 543 ~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 543 FDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 21 224556777888899999877666665555555443
No 482
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.27 E-value=1.3 Score=45.73 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=46.3
Q ss_pred cCeeEEEEeCCCCCchHHHHHHHHHhcCeEEEEEeCCCCCChhHHHHHHHHHh----cCCCeE-EEEeccCcCCccHHHH
Q 005154 87 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 161 (711)
Q Consensus 87 ~~~~i~liDtPG~~df~~~~~~~l~~~D~~llvvda~~g~~~~t~~~~~~~~~----~~ip~i-vviNK~D~~~~~~~~~ 161 (711)
+.+.+.++|+|+-..... ...++..+|.+|+++.+..--..-...+.+.+.. .+.++. +++|+.+.. ..
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-----~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-----hH
Confidence 357899999997543221 1246788999999997742100011122222222 233433 567875532 23
Q ss_pred HHHHHHHhCCcceEEEecc
Q 005154 162 RDMIVTNLGAKPLVVQLPV 180 (711)
Q Consensus 162 ~~~l~~~l~~~~~~~~~p~ 180 (711)
++++.+.++...+ ..+|.
T Consensus 236 v~~~a~~~~~~~l-g~IP~ 253 (314)
T 3fwy_A 236 VDRFCKETNFRRL-AHMPD 253 (314)
T ss_dssp HHHHHHHHTCCEE-EEECC
T ss_pred HHHHHHHhCCeEE-EEecC
Confidence 4566666765432 34553
No 483
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.26 E-value=0.52 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
+.++|+|++|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 459999999999999999997443
No 484
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.09 E-value=0.3 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
.+.|+|.|.+|+||||+++.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 485
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.08 E-value=0.45 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHh
Q 005154 26 NIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 26 ~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
-.+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999744
No 486
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.85 E-value=0.47 Score=43.97 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHh
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
..+++.+.|++|+|||||+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999643
No 487
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.80 E-value=0.56 Score=44.65 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHh
Q 005154 25 RNIGIMAHIDAGKTTTTERVLFY 47 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll~~ 47 (711)
+++.+.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999743
No 488
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.70 E-value=4.4 Score=42.35 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+++.|.|++|+|||||+..+....
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999997443
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=84.67 E-value=2.6 Score=43.52 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+.|.+.|++|+|||+|+.++....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999999999997443
No 490
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.66 E-value=0.53 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...++++|++|+|||||+..|..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999963
No 491
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.64 E-value=0.46 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+...++|+|++|+|||||+..|.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 34678999999999999999986
No 492
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.60 E-value=0.51 Score=49.18 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhcC
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYTG 49 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~g 49 (711)
..+++++|++|+|||||++.+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999999999999999975543
No 493
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.59 E-value=0.56 Score=46.60 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+.|.+.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997443
No 494
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.55 E-value=5.8 Score=40.53 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.8
Q ss_pred ceEEEEE-cCCCCCHHHHHHHHHHh
Q 005154 24 YRNIGIM-AHIDAGKTTTTERVLFY 47 (711)
Q Consensus 24 ~~~I~iv-G~~~~GKSTL~~~Ll~~ 47 (711)
.+++.++ |++|+||||++.++...
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3445444 55999999999999643
No 495
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.20 E-value=0.27 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll 45 (711)
+.-.++|+|+.|+|||||++.|.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 45678999999999999999994
No 496
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.09 E-value=0.48 Score=51.76 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 005154 23 DYRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 23 ~~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
+...++|+|+.|+|||||++.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999963
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.74 E-value=1.6 Score=45.78 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+.|.+.|++|+|||+|+.++....
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999997443
No 498
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=83.73 E-value=0.56 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 005154 25 RNIGIMAHIDAGKTTTTERVL 45 (711)
Q Consensus 25 ~~I~ivG~~~~GKSTL~~~Ll 45 (711)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 678999999999999999996
No 499
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.72 E-value=0.6 Score=45.64 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 005154 24 YRNIGIMAHIDAGKTTTTERVLF 46 (711)
Q Consensus 24 ~~~I~ivG~~~~GKSTL~~~Ll~ 46 (711)
...++|+|++|+|||||+..|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999999999973
No 500
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.39 E-value=5.2 Score=41.16 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhc
Q 005154 22 KDYRNIGIMAHIDAGKTTTTERVLFYT 48 (711)
Q Consensus 22 ~~~~~I~ivG~~~~GKSTL~~~Ll~~~ 48 (711)
.+..++.|.|++|+|||++++.++...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999997543
Done!