Query 005155
Match_columns 711
No_of_seqs 282 out of 1623
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 18:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12902 secA preprotein trans 100.0 2E-203 3E-208 1733.9 63.4 682 1-705 84-792 (939)
2 CHL00122 secA preprotein trans 100.0 1E-194 2E-199 1664.3 62.3 658 1-705 75-733 (870)
3 PRK12901 secA preprotein trans 100.0 9E-195 2E-199 1673.0 55.7 566 1-704 168-844 (1112)
4 PRK12903 secA preprotein trans 100.0 2E-192 3E-197 1637.8 59.2 562 1-704 77-640 (925)
5 PRK13103 secA preprotein trans 100.0 2E-190 5E-195 1634.4 59.5 596 1-705 81-695 (913)
6 PRK13107 preprotein translocas 100.0 5E-186 1E-190 1597.8 60.2 595 1-704 81-694 (908)
7 PRK12326 preprotein translocas 100.0 1E-185 2E-190 1565.5 59.8 554 1-690 77-632 (764)
8 PRK13104 secA preprotein trans 100.0 2E-184 3E-189 1589.1 61.5 596 1-704 81-690 (896)
9 PRK12904 preprotein translocas 100.0 2E-183 4E-188 1579.0 62.8 597 1-705 80-677 (830)
10 PRK12900 secA preprotein trans 100.0 1E-180 3E-185 1556.7 56.4 564 1-702 137-812 (1025)
11 COG0653 SecA Preprotein transl 100.0 9E-181 2E-185 1542.1 45.7 571 1-706 79-650 (822)
12 PRK12906 secA preprotein trans 100.0 4E-175 9E-180 1504.1 59.6 567 1-704 79-658 (796)
13 PRK12899 secA preprotein trans 100.0 1E-169 3E-174 1462.4 60.4 566 1-704 93-784 (970)
14 TIGR00963 secA preprotein tran 100.0 1E-167 2E-172 1432.5 60.9 566 1-705 55-621 (745)
15 TIGR03714 secA2 accessory Sec 100.0 5E-162 1E-166 1392.2 62.4 564 1-702 69-643 (762)
16 PRK09200 preprotein translocas 100.0 2E-159 4E-164 1381.0 60.7 569 1-705 77-650 (790)
17 PRK12898 secA preprotein trans 100.0 6E-150 1E-154 1279.0 55.0 524 1-662 102-647 (656)
18 PF07517 SecA_DEAD: SecA DEAD- 100.0 1.3E-65 2.9E-70 534.8 17.1 191 1-306 76-266 (266)
19 KOG0331 ATP-dependent RNA heli 100.0 4.5E-33 9.7E-38 310.2 26.5 281 2-420 113-408 (519)
20 PF01043 SecA_PP_bind: SecA pr 100.0 1.5E-31 3.2E-36 246.4 11.7 109 154-262 3-113 (113)
21 COG0513 SrmB Superfamily II DN 100.0 1.6E-29 3.5E-34 286.6 28.8 276 2-420 51-340 (513)
22 KOG0333 U5 snRNP-like RNA heli 100.0 2.7E-29 5.9E-34 274.6 28.2 299 1-420 266-584 (673)
23 PTZ00110 helicase; Provisional 100.0 3.8E-28 8.3E-33 277.3 31.7 280 2-420 152-444 (545)
24 KOG0330 ATP-dependent RNA heli 100.0 5E-29 1.1E-33 265.3 21.7 277 1-420 82-367 (476)
25 PRK04837 ATP-dependent RNA hel 100.0 1.9E-27 4.2E-32 262.8 31.5 278 2-420 30-322 (423)
26 PRK10590 ATP-dependent RNA hel 100.0 5.5E-27 1.2E-31 262.1 32.5 275 2-420 23-312 (456)
27 PLN00206 DEAD-box ATP-dependen 100.0 5.3E-27 1.1E-31 266.4 31.6 277 2-420 143-435 (518)
28 PRK04537 ATP-dependent RNA hel 100.0 6.4E-27 1.4E-31 268.6 32.3 278 2-420 31-324 (572)
29 PRK11776 ATP-dependent RNA hel 100.0 3.6E-26 7.8E-31 255.3 32.4 274 2-420 26-309 (460)
30 PRK11634 ATP-dependent RNA hel 100.0 3.6E-26 7.7E-31 264.8 33.2 275 2-420 28-312 (629)
31 PRK11192 ATP-dependent RNA hel 100.0 8.6E-26 1.9E-30 250.2 32.8 273 2-420 23-312 (434)
32 PRK01297 ATP-dependent RNA hel 99.9 4.6E-25 1E-29 247.6 33.3 278 2-420 109-402 (475)
33 KOG0342 ATP-dependent RNA heli 99.9 1.7E-24 3.8E-29 236.2 30.2 280 4-420 106-397 (543)
34 KOG0340 ATP-dependent RNA heli 99.9 5.7E-25 1.2E-29 232.3 24.5 281 2-420 29-321 (442)
35 KOG0345 ATP-dependent RNA heli 99.9 1.2E-24 2.5E-29 236.3 26.3 277 3-420 29-324 (567)
36 KOG0343 RNA Helicase [RNA proc 99.9 8.7E-25 1.9E-29 240.4 24.9 279 2-420 91-382 (758)
37 KOG0335 ATP-dependent RNA heli 99.9 1.4E-24 2.9E-29 239.5 24.8 283 2-420 96-404 (482)
38 KOG0336 ATP-dependent RNA heli 99.9 6.2E-25 1.3E-29 234.8 20.8 277 2-420 242-532 (629)
39 TIGR00614 recQ_fam ATP-depende 99.9 2.2E-23 4.7E-28 234.2 31.7 269 2-420 11-293 (470)
40 TIGR03817 DECH_helic helicase/ 99.9 1.3E-23 2.8E-28 247.6 29.6 129 2-138 36-170 (742)
41 PTZ00424 helicase 45; Provisio 99.9 4.9E-23 1.1E-27 224.8 31.9 126 2-138 50-183 (401)
42 KOG0338 ATP-dependent RNA heli 99.9 6.8E-24 1.5E-28 231.8 24.7 281 2-420 203-493 (691)
43 PRK11057 ATP-dependent DNA hel 99.9 1.4E-22 3E-27 234.4 33.9 266 2-420 25-303 (607)
44 KOG0347 RNA helicase [RNA proc 99.9 3.2E-24 7E-29 235.9 18.9 297 1-420 202-530 (731)
45 KOG0341 DEAD-box protein abstr 99.9 1.9E-24 4.1E-29 229.9 15.2 276 1-420 191-488 (610)
46 KOG0339 ATP-dependent RNA heli 99.9 4.8E-23 1E-27 224.9 23.4 279 2-420 245-535 (731)
47 PRK10917 ATP-dependent DNA hel 99.9 1.7E-22 3.6E-27 236.6 28.9 121 2-137 261-395 (681)
48 TIGR01389 recQ ATP-dependent D 99.9 1.3E-21 2.8E-26 225.6 32.2 265 3-420 14-291 (591)
49 PLN03137 ATP-dependent DNA hel 99.9 9E-22 2E-26 234.7 29.5 269 3-420 461-747 (1195)
50 PRK13767 ATP-dependent helicas 99.9 2.2E-21 4.8E-26 232.6 32.9 128 2-138 32-185 (876)
51 KOG0328 Predicted ATP-dependen 99.9 3.1E-22 6.8E-27 206.5 20.7 275 2-420 49-333 (400)
52 TIGR00580 mfd transcription-re 99.9 1.1E-21 2.3E-26 234.9 28.6 121 2-137 451-585 (926)
53 KOG0334 RNA helicase [RNA proc 99.9 2.3E-22 5E-27 235.0 21.7 280 2-420 387-680 (997)
54 TIGR00643 recG ATP-dependent D 99.9 2.5E-21 5.4E-26 224.9 29.8 121 2-137 235-369 (630)
55 PRK10689 transcription-repair 99.9 1E-20 2.2E-25 230.8 29.7 261 2-420 600-878 (1147)
56 PRK02362 ski2-like helicase; P 99.9 2.4E-19 5.3E-24 211.7 33.2 129 2-143 23-154 (737)
57 KOG0348 ATP-dependent RNA heli 99.8 6.5E-20 1.4E-24 201.8 23.0 131 2-143 159-304 (708)
58 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.8E-19 4E-24 211.9 28.2 279 2-420 15-353 (844)
59 PRK01172 ski2-like helicase; P 99.8 2E-19 4.3E-24 210.4 28.1 129 2-143 22-152 (674)
60 PHA02558 uvsW UvsW helicase; P 99.8 1.6E-19 3.4E-24 204.7 24.9 293 2-420 114-412 (501)
61 PRK14701 reverse gyrase; Provi 99.8 1.8E-19 4E-24 224.9 27.4 125 2-138 79-213 (1638)
62 PRK00254 ski2-like helicase; P 99.8 5.6E-19 1.2E-23 208.2 29.0 125 2-138 23-151 (720)
63 KOG0326 ATP-dependent RNA heli 99.8 1.2E-19 2.5E-24 190.1 14.4 274 2-420 107-389 (459)
64 PRK09401 reverse gyrase; Revie 99.8 3.6E-18 7.9E-23 209.0 29.8 125 2-138 80-214 (1176)
65 KOG4284 DEAD box protein [Tran 99.8 1.9E-19 4.2E-24 201.0 15.3 283 2-420 47-339 (980)
66 TIGR01587 cas3_core CRISPR-ass 99.8 7.7E-18 1.7E-22 181.7 24.4 73 347-420 216-295 (358)
67 TIGR01054 rgy reverse gyrase. 99.8 2.3E-17 4.9E-22 202.2 30.8 123 2-138 78-212 (1171)
68 PRK13766 Hef nuclease; Provisi 99.8 4.8E-17 1E-21 192.9 28.1 125 3-138 16-144 (773)
69 TIGR01970 DEAH_box_HrpB ATP-de 99.8 4.4E-17 9.6E-22 193.6 27.4 119 7-140 9-128 (819)
70 PHA02653 RNA helicase NPH-II; 99.8 5.9E-17 1.3E-21 188.8 27.7 119 5-140 167-306 (675)
71 PRK11664 ATP-dependent RNA hel 99.8 3.7E-17 7.9E-22 194.4 25.1 116 7-137 12-128 (812)
72 PRK09751 putative ATP-dependen 99.8 5.7E-17 1.2E-21 200.2 27.2 109 21-138 2-137 (1490)
73 KOG0344 ATP-dependent RNA heli 99.8 1.8E-17 4E-22 184.9 20.0 280 2-420 158-455 (593)
74 KOG0346 RNA helicase [RNA proc 99.8 5.4E-16 1.2E-20 168.2 30.5 269 2-413 41-328 (569)
75 KOG0350 DEAD-box ATP-dependent 99.8 8.9E-17 1.9E-21 176.4 24.1 129 2-141 159-310 (620)
76 KOG0337 ATP-dependent RNA heli 99.7 5.1E-17 1.1E-21 175.4 15.5 279 2-424 43-332 (529)
77 PF07516 SecA_SW: SecA Wing an 99.7 1.7E-17 3.8E-22 168.7 11.2 79 625-705 1-79 (214)
78 KOG0332 ATP-dependent RNA heli 99.7 2.1E-16 4.6E-21 168.7 19.1 278 2-420 112-397 (477)
79 KOG0327 Translation initiation 99.7 2.5E-16 5.4E-21 168.9 19.8 275 2-420 48-330 (397)
80 TIGR03158 cas3_cyano CRISPR-as 99.7 2.4E-15 5.2E-20 164.0 25.7 123 7-137 2-157 (357)
81 COG1201 Lhr Lhr-like helicases 99.7 2.4E-15 5.1E-20 176.8 26.1 279 2-419 22-320 (814)
82 PRK09694 helicase Cas3; Provis 99.7 2.7E-14 5.8E-19 170.6 28.5 82 340-421 547-639 (878)
83 COG1200 RecG RecG-like helicas 99.6 1.1E-14 2.4E-19 166.3 20.5 244 19-420 287-550 (677)
84 COG1202 Superfamily II helicas 99.6 2.6E-14 5.7E-19 159.1 21.8 271 4-420 218-507 (830)
85 TIGR00603 rad25 DNA repair hel 99.6 8.6E-14 1.9E-18 162.8 23.5 83 332-420 475-559 (732)
86 PRK05580 primosome assembly pr 99.6 4.6E-13 1E-17 157.3 29.0 116 3-138 145-271 (679)
87 COG1111 MPH1 ERCC4-like helica 99.6 1.3E-13 2.9E-18 152.6 22.5 149 8-170 22-187 (542)
88 PRK11131 ATP-dependent RNA hel 99.6 4.9E-14 1.1E-18 172.2 21.0 83 336-420 268-354 (1294)
89 PRK04914 ATP-dependent helicas 99.6 6.7E-12 1.5E-16 151.2 38.4 83 336-420 478-563 (956)
90 COG1205 Distinct helicase fami 99.6 2.7E-13 5.9E-18 162.2 24.8 278 2-419 70-380 (851)
91 COG0514 RecQ Superfamily II DN 99.5 2.1E-12 4.5E-17 147.7 27.4 262 5-420 20-297 (590)
92 TIGR00595 priA primosomal prot 99.5 1.7E-12 3.8E-17 147.8 25.8 99 21-140 3-108 (505)
93 KOG0329 ATP-dependent RNA heli 99.5 1E-13 2.3E-18 142.2 13.2 126 2-138 64-198 (387)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.1E-12 2.4E-17 160.9 21.3 82 337-420 262-347 (1283)
95 cd00268 DEADc DEAD-box helicas 99.4 3.4E-12 7.4E-17 126.6 13.3 127 2-138 21-156 (203)
96 COG1061 SSL2 DNA or RNA helica 99.4 1.8E-11 4E-16 137.3 20.5 119 1-140 37-161 (442)
97 PF00270 DEAD: DEAD/DEAH box h 99.4 7.4E-12 1.6E-16 119.7 13.6 126 4-139 1-133 (169)
98 TIGR01407 dinG_rel DnaQ family 99.3 2.9E-10 6.3E-15 137.1 27.4 136 281-420 588-742 (850)
99 KOG0952 DNA/RNA helicase MER3/ 99.3 3.5E-10 7.7E-15 133.4 21.5 126 6-141 114-253 (1230)
100 COG1204 Superfamily II helicas 99.2 3.1E-10 6.7E-15 134.7 20.6 113 19-145 51-165 (766)
101 cd00079 HELICc Helicase superf 99.2 1.1E-10 2.5E-15 106.3 12.5 88 332-420 7-95 (131)
102 PRK11448 hsdR type I restricti 99.2 8.6E-09 1.9E-13 126.9 31.1 130 3-137 414-552 (1123)
103 PLN03142 Probable chromatin-re 99.1 1.7E-08 3.6E-13 122.9 28.1 86 335-420 469-557 (1033)
104 KOG0351 ATP-dependent DNA heli 99.1 1.8E-09 3.9E-14 129.9 17.6 270 4-420 266-552 (941)
105 PRK07246 bifunctional ATP-depe 99.1 2E-08 4.3E-13 120.8 24.9 136 282-422 567-713 (820)
106 KOG0352 ATP-dependent DNA heli 99.0 3.8E-09 8.3E-14 115.2 16.1 121 4-137 22-153 (641)
107 PRK05298 excinuclease ABC subu 99.0 1.6E-08 3.6E-13 118.8 22.1 85 335-420 428-513 (652)
108 cd00046 DEXDc DEAD-like helica 99.0 2.6E-09 5.7E-14 96.2 12.1 111 17-138 2-116 (144)
109 smart00487 DEXDc DEAD-like hel 98.9 1E-08 2.3E-13 98.0 12.8 127 2-138 8-142 (201)
110 COG1110 Reverse gyrase [DNA re 98.9 2.2E-07 4.7E-12 110.4 25.7 125 2-138 82-216 (1187)
111 COG1203 CRISPR-associated heli 98.9 7.6E-08 1.6E-12 114.7 21.6 132 291-422 373-513 (733)
112 COG4098 comFA Superfamily II D 98.8 2.9E-07 6.3E-12 98.8 20.5 78 341-420 293-372 (441)
113 PRK08074 bifunctional ATP-depe 98.8 5E-07 1.1E-11 110.3 24.7 137 282-420 666-821 (928)
114 TIGR00631 uvrb excinuclease AB 98.8 1.1E-07 2.4E-12 111.8 17.3 181 229-420 324-509 (655)
115 KOG0353 ATP-dependent DNA heli 98.7 5.3E-07 1.2E-11 97.4 16.7 268 4-419 96-383 (695)
116 KOG0349 Putative DEAD-box RNA 98.6 5.9E-08 1.3E-12 106.2 7.8 280 45-420 288-575 (725)
117 PRK11747 dinG ATP-dependent DN 98.5 4.7E-06 1E-10 99.0 20.5 134 282-420 450-602 (697)
118 KOG0951 RNA helicase BRR2, DEA 98.5 1.1E-05 2.5E-10 97.5 22.9 105 19-136 329-448 (1674)
119 COG1197 Mfd Transcription-repa 98.4 1.8E-05 3.8E-10 96.4 22.2 119 4-137 596-728 (1139)
120 PF04851 ResIII: Type III rest 98.4 1.1E-06 2.3E-11 84.6 9.5 134 2-141 3-162 (184)
121 TIGR03117 cas_csf4 CRISPR-asso 98.3 2.1E-06 4.5E-11 100.4 11.1 65 13-77 12-83 (636)
122 COG1643 HrpA HrpA-like helicas 98.3 2.1E-05 4.6E-10 94.5 19.7 123 291-419 198-329 (845)
123 COG1199 DinG Rad3-related DNA 98.2 5.1E-05 1.1E-09 89.3 19.8 65 2-66 15-86 (654)
124 KOG0354 DEAD-box like helicase 98.2 1.8E-05 3.9E-10 93.0 15.1 118 8-137 69-191 (746)
125 PF00271 Helicase_C: Helicase 98.2 7E-06 1.5E-10 69.6 7.8 49 371-420 1-50 (78)
126 smart00489 DEXDc3 DEAD-like he 98.2 1.8E-05 3.8E-10 84.7 12.7 65 2-66 8-84 (289)
127 smart00488 DEXDc2 DEAD-like he 98.2 1.8E-05 3.8E-10 84.7 12.7 65 2-66 8-84 (289)
128 KOG0924 mRNA splicing factor A 98.0 0.00013 2.8E-09 84.3 16.5 110 7-136 363-479 (1042)
129 smart00490 HELICc helicase sup 98.0 2.5E-05 5.4E-10 65.2 8.0 53 368-420 2-54 (82)
130 COG4096 HsdR Type I site-speci 98.0 0.001 2.2E-08 79.0 22.8 119 6-137 169-297 (875)
131 KOG0922 DEAH-box RNA helicase 97.9 0.00033 7.2E-09 81.1 16.3 115 291-415 198-328 (674)
132 KOG0923 mRNA splicing factor A 97.7 0.00091 2E-08 77.4 16.6 117 291-417 413-546 (902)
133 COG1198 PriA Primosomal protei 97.7 0.0036 7.8E-08 74.7 22.1 97 19-136 221-324 (730)
134 KOG0385 Chromatin remodeling c 97.7 0.013 2.7E-07 69.4 25.2 343 1-420 168-557 (971)
135 COG4581 Superfamily II RNA hel 97.7 0.0011 2.4E-08 80.9 17.4 125 3-143 120-246 (1041)
136 COG0556 UvrB Helicase subunit 97.6 0.0067 1.4E-07 69.3 21.2 135 279-420 377-513 (663)
137 KOG0920 ATP-dependent RNA heli 97.5 0.0013 2.7E-08 79.7 15.1 111 7-137 180-299 (924)
138 TIGR00348 hsdR type I site-spe 97.5 0.00025 5.5E-09 84.1 8.9 108 18-137 266-377 (667)
139 KOG0948 Nuclear exosomal RNA h 97.5 0.00039 8.5E-09 81.2 9.7 116 5-141 132-250 (1041)
140 KOG0387 Transcription-coupled 97.3 0.0039 8.4E-08 73.7 15.4 88 332-419 525-615 (923)
141 KOG0950 DNA polymerase theta/e 97.3 0.0017 3.7E-08 77.9 12.1 131 2-143 223-358 (1008)
142 PF07652 Flavi_DEAD: Flaviviru 96.6 0.0038 8.3E-08 60.7 6.1 101 16-137 3-107 (148)
143 KOG1000 Chromatin remodeling p 96.6 0.14 3E-06 58.4 18.4 321 4-422 200-563 (689)
144 COG0553 HepA Superfamily II DN 96.5 0.58 1.3E-05 56.4 25.0 80 337-416 692-776 (866)
145 PF00176 SNF2_N: SNF2 family N 96.4 0.013 2.9E-07 61.0 9.0 108 17-137 27-146 (299)
146 PRK11773 uvrD DNA-dependent he 96.2 0.25 5.4E-06 59.5 19.6 53 334-386 325-380 (721)
147 PRK14873 primosome assembly pr 96.1 0.029 6.4E-07 66.8 11.0 92 24-136 169-268 (665)
148 KOG0384 Chromodomain-helicase 96.0 0.38 8.2E-06 59.9 19.2 335 19-420 393-769 (1373)
149 PF12340 DUF3638: Protein of u 95.4 0.25 5.4E-06 51.7 13.1 141 5-151 26-196 (229)
150 TIGR01075 uvrD DNA helicase II 95.0 3.2 6.8E-05 50.2 22.8 104 4-137 6-115 (715)
151 KOG0947 Cytoplasmic exosomal R 94.9 0.55 1.2E-05 57.3 15.3 119 5-143 300-420 (1248)
152 TIGR01073 pcrA ATP-dependent D 94.4 2.4 5.2E-05 51.2 19.6 104 4-137 6-115 (726)
153 PF02399 Herpes_ori_bp: Origin 94.0 2.5 5.4E-05 51.4 18.1 69 346-420 275-343 (824)
154 KOG0389 SNF2 family DNA-depend 93.9 0.14 3.1E-06 61.1 7.7 130 5-152 402-562 (941)
155 PRK10919 ATP-dependent DNA hel 93.5 4.5 9.8E-05 48.6 19.4 108 1-137 1-114 (672)
156 PF09848 DUF2075: Uncharacteri 93.3 0.25 5.5E-06 54.2 8.0 48 20-67 6-55 (352)
157 PF13401 AAA_22: AAA domain; P 93.1 0.13 2.8E-06 47.2 4.5 55 19-73 8-65 (131)
158 PRK10536 hypothetical protein; 92.9 1.4 3E-05 47.1 12.5 66 6-72 63-144 (262)
159 PRK12723 flagellar biosynthesi 92.7 0.36 7.8E-06 54.2 8.1 56 20-76 179-238 (388)
160 KOG0951 RNA helicase BRR2, DEA 92.6 0.12 2.5E-06 64.3 4.4 102 19-137 1163-1265(1674)
161 PRK15483 type III restriction- 92.3 0.46 9.9E-06 58.7 9.0 37 19-55 63-101 (986)
162 KOG1123 RNA polymerase II tran 91.9 0.11 2.4E-06 59.2 2.9 121 6-137 306-434 (776)
163 TIGR00604 rad3 DNA repair heli 91.8 0.42 9E-06 57.5 7.8 138 282-420 435-601 (705)
164 COG0610 Type I site-specific r 91.5 0.81 1.8E-05 57.1 10.1 109 18-137 276-388 (962)
165 KOG0392 SNF2 family DNA-depend 91.1 0.69 1.5E-05 57.8 8.5 117 19-152 998-1138(1549)
166 TIGR00376 DNA helicase, putati 90.7 2.2 4.9E-05 50.9 12.3 61 5-65 160-223 (637)
167 KOG0925 mRNA splicing factor A 90.4 0.65 1.4E-05 53.2 6.9 150 236-415 161-325 (699)
168 PF13245 AAA_19: Part of AAA d 90.0 1.3 2.9E-05 38.3 7.2 45 19-63 14-62 (76)
169 PF00448 SRP54: SRP54-type pro 89.8 0.97 2.1E-05 46.0 7.3 58 23-82 9-67 (196)
170 PF13604 AAA_30: AAA domain; P 89.8 1.4 3.1E-05 44.5 8.4 58 5-62 4-65 (196)
171 TIGR00064 ftsY signal recognit 89.3 1.9 4.1E-05 46.1 9.2 53 22-75 79-131 (272)
172 TIGR01425 SRP54_euk signal rec 89.2 3 6.4E-05 47.7 11.2 81 23-105 108-197 (429)
173 KOG0926 DEAH-box RNA helicase 89.0 14 0.0003 45.2 16.5 102 14-136 268-383 (1172)
174 TIGR00596 rad1 DNA repair prot 88.6 2.5 5.4E-05 51.9 10.7 75 86-170 1-90 (814)
175 KOG1805 DNA replication helica 88.4 1.7 3.6E-05 53.4 8.9 126 5-149 672-820 (1100)
176 PRK10875 recD exonuclease V su 87.8 2.4 5.2E-05 50.5 9.7 68 5-72 155-228 (615)
177 PF00580 UvrD-helicase: UvrD/R 87.4 1.4 3.1E-05 46.1 6.8 118 5-136 3-126 (315)
178 PF02562 PhoH: PhoH-like prote 87.3 1.7 3.6E-05 44.9 7.0 48 6-53 8-59 (205)
179 KOG1803 DNA helicase [Replicat 87.2 1.7 3.7E-05 51.0 7.7 55 7-61 190-247 (649)
180 KOG0989 Replication factor C, 86.9 0.5 1.1E-05 51.5 3.1 34 103-140 111-144 (346)
181 PRK00771 signal recognition pa 86.7 4.6 0.0001 46.2 10.8 52 23-75 103-154 (437)
182 COG3587 Restriction endonuclea 86.4 1.1 2.5E-05 54.2 5.9 34 20-53 79-114 (985)
183 cd00009 AAA The AAA+ (ATPases 86.1 2.4 5.2E-05 38.1 6.8 38 19-56 23-60 (151)
184 PRK10867 signal recognition pa 85.8 6.2 0.00013 45.2 11.2 84 20-104 105-197 (433)
185 cd03115 SRP The signal recogni 85.6 2.8 6E-05 40.8 7.3 52 22-74 7-58 (173)
186 TIGR01447 recD exodeoxyribonuc 85.5 4.2 9.2E-05 48.2 10.1 67 5-71 148-221 (586)
187 COG2109 BtuR ATP:corrinoid ade 85.5 2.6 5.6E-05 43.1 7.1 32 19-50 30-63 (198)
188 TIGR03499 FlhF flagellar biosy 85.3 2 4.3E-05 46.0 6.7 52 23-75 202-255 (282)
189 PRK04296 thymidine kinase; Pro 85.1 0.94 2E-05 45.5 3.9 28 24-51 11-38 (190)
190 cd01124 KaiC KaiC is a circadi 84.9 1.8 3.9E-05 42.2 5.7 43 20-63 4-46 (187)
191 COG0210 UvrD Superfamily I DNA 84.9 67 0.0015 38.3 19.9 105 4-136 4-113 (655)
192 PRK14974 cell division protein 84.8 2.6 5.7E-05 46.5 7.5 55 21-76 146-200 (336)
193 KOG0949 Predicted helicase, DE 84.7 3.6 7.9E-05 50.8 9.0 115 19-141 530-648 (1330)
194 KOG1802 RNA helicase nonsense 84.6 5.4 0.00012 47.5 10.1 69 6-78 414-485 (935)
195 PRK14722 flhF flagellar biosyn 84.3 5.3 0.00011 44.9 9.6 61 19-80 141-203 (374)
196 smart00382 AAA ATPases associa 83.3 1.1 2.4E-05 39.7 3.1 36 20-57 7-44 (148)
197 cd01120 RecA-like_NTPases RecA 83.3 5.6 0.00012 36.9 8.1 36 22-57 6-41 (165)
198 PRK10416 signal recognition pa 82.3 5.3 0.00012 43.7 8.6 52 23-75 122-173 (318)
199 cd00561 CobA_CobO_BtuR ATP:cor 82.3 2.4 5.2E-05 42.0 5.3 34 19-52 4-42 (159)
200 KOG1133 Helicase of the DEAD s 81.5 1.8 3.8E-05 51.6 4.6 40 2-42 15-60 (821)
201 PRK08727 hypothetical protein; 81.4 5.6 0.00012 41.2 8.0 32 19-51 45-77 (233)
202 TIGR00959 ffh signal recogniti 81.3 11 0.00024 43.0 10.9 85 20-105 104-197 (428)
203 COG4889 Predicted helicase [Ge 81.1 4.9 0.00011 49.3 8.1 61 16-80 182-242 (1518)
204 PRK07414 cob(I)yrinic acid a,c 80.2 3.6 7.8E-05 41.6 5.8 31 19-49 23-55 (178)
205 COG1474 CDC6 Cdc6-related prot 79.7 2.9 6.4E-05 46.7 5.5 90 19-139 46-137 (366)
206 TIGR00631 uvrb excinuclease AB 79.5 2.8 6.2E-05 50.2 5.7 47 19-68 33-79 (655)
207 PRK05973 replicative DNA helic 79.3 13 0.00029 39.1 9.9 49 15-64 62-112 (237)
208 PRK05703 flhF flagellar biosyn 79.0 7.3 0.00016 44.4 8.5 53 23-76 229-283 (424)
209 TIGR00708 cobA cob(I)alamin ad 78.8 4.1 9E-05 41.0 5.7 31 19-49 7-39 (173)
210 cd01122 GP4d_helicase GP4d_hel 78.5 16 0.00035 38.1 10.4 115 15-138 28-153 (271)
211 TIGR01547 phage_term_2 phage t 78.2 4.1 8.9E-05 45.3 6.2 104 19-137 5-113 (396)
212 KOG0952 DNA/RNA helicase MER3/ 78.0 3.1 6.7E-05 51.7 5.3 115 19-146 947-1065(1230)
213 KOG0349 Putative DEAD-box RNA 78.0 0.54 1.2E-05 53.0 -0.9 36 2-37 24-61 (725)
214 PRK06995 flhF flagellar biosyn 77.7 12 0.00027 43.4 9.9 81 23-105 264-349 (484)
215 PF03354 Terminase_1: Phage Te 77.6 13 0.00027 42.9 10.0 106 19-138 26-136 (477)
216 COG1419 FlhF Flagellar GTP-bin 76.6 7.8 0.00017 43.9 7.6 79 23-102 211-293 (407)
217 PRK08084 DNA replication initi 76.0 12 0.00026 38.8 8.5 34 19-53 49-83 (235)
218 KOG4150 Predicted ATP-dependen 75.5 44 0.00096 39.6 13.2 121 295-419 458-599 (1034)
219 PRK12726 flagellar biosynthesi 75.2 5.5 0.00012 45.1 6.0 77 23-103 214-298 (407)
220 COG1444 Predicted P-loop ATPas 74.5 16 0.00034 44.6 9.9 60 19-78 235-296 (758)
221 PF01656 CbiA: CobQ/CobB/MinD/ 74.0 4.8 0.0001 39.2 4.7 34 19-52 3-36 (195)
222 PF04364 DNA_pol3_chi: DNA pol 73.6 9.8 0.00021 36.6 6.6 71 339-422 15-92 (137)
223 PRK14721 flhF flagellar biosyn 71.8 14 0.00031 42.1 8.4 80 23-103 199-282 (420)
224 cd02037 MRP-like MRP (Multiple 71.3 5.2 0.00011 38.9 4.2 33 20-52 5-37 (169)
225 KOG0991 Replication factor C, 71.3 2.8 6E-05 44.5 2.4 39 103-142 91-129 (333)
226 PRK00411 cdc6 cell division co 70.0 6 0.00013 43.6 4.8 32 19-52 59-92 (394)
227 PHA02533 17 large terminase pr 69.9 27 0.00058 41.1 10.3 67 3-70 60-131 (534)
228 PRK05298 excinuclease ABC subu 69.7 13 0.00028 44.6 7.9 64 1-67 11-81 (652)
229 PRK11889 flhF flagellar biosyn 69.7 18 0.0004 41.2 8.5 54 23-77 249-302 (436)
230 PRK06893 DNA replication initi 69.6 12 0.00026 38.6 6.7 33 19-52 43-76 (229)
231 COG1435 Tdk Thymidine kinase [ 68.7 15 0.00032 37.9 6.9 80 25-136 14-93 (201)
232 cd02032 Bchl_like This family 68.0 5.8 0.00013 41.5 4.0 30 23-52 8-37 (267)
233 KOG0391 SNF2 family DNA-depend 67.7 11 0.00023 47.8 6.4 97 25-137 644-749 (1958)
234 COG2927 HolC DNA polymerase II 67.0 12 0.00026 36.8 5.5 81 330-423 5-93 (144)
235 PF00308 Bac_DnaA: Bacterial d 66.7 16 0.00035 37.6 6.9 54 125-179 97-165 (219)
236 cd02042 ParA ParA and ParB of 66.4 20 0.00044 31.6 6.6 35 20-54 5-39 (104)
237 PLN03025 replication factor C 66.1 13 0.00027 40.4 6.2 14 125-138 99-112 (319)
238 TIGR02785 addA_Gpos recombinat 66.0 28 0.0006 45.0 10.2 120 4-136 3-126 (1232)
239 TIGR01968 minD_bact septum sit 65.4 7.7 0.00017 39.8 4.2 32 19-50 6-37 (261)
240 TIGR02237 recomb_radB DNA repa 65.3 35 0.00076 34.1 8.9 38 16-53 11-50 (209)
241 TIGR01007 eps_fam capsular exo 65.3 8 0.00017 38.7 4.2 36 19-54 22-57 (204)
242 cd02034 CooC The accessory pro 65.2 25 0.00054 32.8 7.2 34 20-53 4-37 (116)
243 TIGR02768 TraA_Ti Ti-type conj 64.8 19 0.00041 44.0 8.0 57 5-61 355-414 (744)
244 PRK13185 chlL protochlorophyll 64.8 8.1 0.00018 40.5 4.3 31 19-50 7-37 (270)
245 PF05127 Helicase_RecD: Helica 64.5 1.4 2.9E-05 44.5 -1.5 55 20-74 2-57 (177)
246 TIGR02016 BchX chlorophyllide 63.9 8.3 0.00018 41.7 4.3 30 22-51 7-36 (296)
247 PRK05580 primosome assembly pr 63.7 31 0.00068 41.7 9.5 77 336-413 173-251 (679)
248 TIGR00595 priA primosomal prot 63.7 26 0.00056 40.9 8.5 63 348-411 20-84 (505)
249 KOG0925 mRNA splicing factor A 63.4 5.7 0.00012 45.9 3.0 102 14-136 59-170 (699)
250 KOG0390 DNA repair protein, SN 63.3 11 0.00024 46.0 5.5 53 16-72 264-323 (776)
251 KOG0386 Chromatin remodeling c 62.8 16 0.00035 45.5 6.7 120 1-137 395-527 (1157)
252 PF03237 Terminase_6: Terminas 62.5 85 0.0019 33.2 11.7 51 19-69 1-57 (384)
253 PRK14723 flhF flagellar biosyn 62.4 22 0.00048 43.5 7.9 77 23-103 193-276 (767)
254 PRK11054 helD DNA helicase IV; 62.4 23 0.00049 43.0 7.9 84 5-110 199-286 (684)
255 PF13086 AAA_11: AAA domain; P 61.9 28 0.0006 34.4 7.4 61 5-65 4-75 (236)
256 PRK06067 flagellar accessory p 61.8 13 0.00029 38.1 5.2 39 16-54 24-64 (234)
257 PRK14088 dnaA chromosomal repl 61.4 17 0.00037 41.6 6.4 14 125-138 194-207 (440)
258 PF06733 DEAD_2: DEAD_2; Inte 61.4 6.8 0.00015 38.5 2.9 46 85-138 113-158 (174)
259 PRK13869 plasmid-partitioning 59.7 10 0.00023 42.8 4.3 33 19-51 126-158 (405)
260 TIGR02928 orc1/cdc6 family rep 59.4 12 0.00026 40.8 4.5 14 125-138 129-142 (365)
261 TIGR01074 rep ATP-dependent DN 59.2 35 0.00077 40.7 8.8 104 5-137 4-113 (664)
262 TIGR03371 cellulose_yhjQ cellu 59.2 13 0.00027 38.1 4.5 34 20-53 7-40 (246)
263 PRK07993 DNA polymerase III su 59.0 81 0.0018 34.9 10.9 58 93-173 75-136 (334)
264 cd02117 NifH_like This family 58.6 11 0.00025 38.0 4.0 28 23-50 8-35 (212)
265 PF13872 AAA_34: P-loop contai 58.2 21 0.00047 39.0 6.1 113 19-137 66-184 (303)
266 cd00984 DnaB_C DnaB helicase C 57.7 60 0.0013 33.1 9.2 111 15-137 11-135 (242)
267 PF02572 CobA_CobO_BtuR: ATP:c 57.7 28 0.0006 35.1 6.4 32 19-50 5-38 (172)
268 KOG0388 SNF2 family DNA-depend 57.6 93 0.002 38.0 11.4 149 25-225 596-774 (1185)
269 PRK13235 nifH nitrogenase redu 57.4 13 0.00027 39.3 4.2 30 19-49 6-35 (274)
270 TIGR01281 DPOR_bchL light-inde 57.2 12 0.00025 39.2 3.9 29 23-51 8-36 (268)
271 TIGR03453 partition_RepA plasm 57.1 13 0.00027 41.6 4.4 33 19-51 109-141 (387)
272 cd02035 ArsA ArsA ATPase funct 56.0 15 0.00032 37.6 4.3 31 22-52 6-36 (217)
273 PF14417 MEDS: MEDS: MEthanoge 56.0 30 0.00065 34.7 6.5 54 326-379 20-73 (191)
274 TIGR01969 minD_arch cell divis 56.0 15 0.00032 37.6 4.3 33 19-51 5-37 (251)
275 PRK10037 cell division protein 55.9 14 0.0003 38.4 4.2 35 19-53 6-40 (250)
276 PRK12323 DNA polymerase III su 55.1 20 0.00044 43.2 5.8 13 125-137 124-136 (700)
277 PTZ00112 origin recognition co 54.9 13 0.00028 46.3 4.1 14 125-138 869-882 (1164)
278 PRK05728 DNA polymerase III su 54.7 26 0.00057 33.9 5.6 52 334-385 10-65 (142)
279 PRK13230 nitrogenase reductase 54.3 13 0.00029 39.2 3.8 27 23-49 9-35 (279)
280 PHA02518 ParA-like protein; Pr 54.2 16 0.00035 36.2 4.2 33 20-52 6-38 (211)
281 COG4626 Phage terminase-like p 54.1 42 0.00091 39.5 8.0 52 19-70 90-145 (546)
282 PRK07764 DNA polymerase III su 54.0 32 0.00069 42.6 7.4 13 125-137 120-132 (824)
283 COG3972 Superfamily I DNA and 54.0 68 0.0015 37.6 9.4 110 21-136 182-306 (660)
284 PRK13705 plasmid-partitioning 53.9 14 0.00031 41.5 4.2 32 19-50 111-142 (388)
285 cd03111 CpaE_like This protein 53.9 19 0.00041 32.6 4.2 36 19-54 4-40 (106)
286 PRK08760 replicative DNA helic 53.8 53 0.0012 38.1 8.8 112 14-137 226-351 (476)
287 TIGR03117 cas_csf4 CRISPR-asso 53.8 1.3E+02 0.0029 36.3 12.3 81 336-419 452-538 (636)
288 PRK06090 DNA polymerase III su 53.3 1.3E+02 0.0028 33.2 11.3 58 92-172 74-135 (319)
289 COG1875 NYN ribonuclease and A 53.0 24 0.00051 39.9 5.5 42 1-42 226-272 (436)
290 PHA02519 plasmid partition pro 52.8 16 0.00034 41.2 4.2 32 19-50 111-142 (387)
291 TIGR03029 EpsG chain length de 52.6 17 0.00036 38.3 4.2 34 19-52 108-141 (274)
292 PF02374 ArsA_ATPase: Anion-tr 52.5 17 0.00037 39.5 4.4 32 23-54 9-40 (305)
293 cd02040 NifH NifH gene encodes 51.4 19 0.00042 37.3 4.4 31 19-50 6-36 (270)
294 COG3421 Uncharacterized protei 51.1 12 0.00026 44.4 3.0 113 20-137 2-124 (812)
295 TIGR00609 recB exodeoxyribonuc 51.0 34 0.00074 43.6 7.2 55 16-70 9-73 (1087)
296 PRK05595 replicative DNA helic 50.8 59 0.0013 37.1 8.5 111 15-137 199-323 (444)
297 cd02036 MinD Bacterial cell di 50.6 22 0.00048 34.1 4.4 30 20-49 5-34 (179)
298 PRK12724 flagellar biosynthesi 50.6 41 0.00088 38.7 7.0 52 23-75 231-283 (432)
299 COG0541 Ffh Signal recognition 50.4 85 0.0018 36.2 9.4 58 24-83 109-167 (451)
300 TIGR00347 bioD dethiobiotin sy 50.3 21 0.00046 34.4 4.2 31 19-49 2-32 (166)
301 cd00550 ArsA_ATPase Oxyanion-t 50.2 18 0.00039 38.0 4.0 32 22-53 7-38 (254)
302 PF05970 PIF1: PIF1-like helic 50.2 14 0.00031 40.9 3.4 59 15-75 20-81 (364)
303 PRK13232 nifH nitrogenase redu 50.1 20 0.00044 37.7 4.3 30 22-51 8-37 (273)
304 PF01695 IstB_IS21: IstB-like 50.0 21 0.00046 35.7 4.2 36 19-54 51-86 (178)
305 COG1192 Soj ATPases involved i 49.9 21 0.00047 37.0 4.5 32 19-50 7-39 (259)
306 PRK14873 primosome assembly pr 49.5 76 0.0017 38.5 9.4 76 337-413 172-250 (665)
307 PRK09361 radB DNA repair and r 49.5 72 0.0016 32.4 8.1 37 16-52 22-60 (225)
308 KOG1002 Nucleotide excision re 49.4 52 0.0011 38.5 7.5 117 16-138 205-329 (791)
309 TIGR03015 pepcterm_ATPase puta 49.2 55 0.0012 33.8 7.4 51 19-73 47-98 (269)
310 PRK07413 hypothetical protein; 48.9 49 0.0011 37.4 7.3 31 19-49 21-59 (382)
311 PRK10818 cell division inhibit 48.6 23 0.0005 37.0 4.4 34 19-52 7-40 (270)
312 PRK14956 DNA polymerase III su 48.5 25 0.00053 41.0 5.0 13 125-137 121-133 (484)
313 TIGR01287 nifH nitrogenase iro 48.5 18 0.0004 38.0 3.7 27 23-49 8-34 (275)
314 KOG0338 ATP-dependent RNA heli 48.5 26 0.00057 40.9 5.1 63 32-98 415-483 (691)
315 PRK13236 nitrogenase reductase 48.3 20 0.00043 38.6 4.0 30 23-52 14-43 (296)
316 PF01408 GFO_IDH_MocA: Oxidore 48.2 27 0.00059 31.5 4.3 88 290-382 27-118 (120)
317 PRK13234 nifH nitrogenase redu 48.2 22 0.00047 38.3 4.3 29 22-50 11-39 (295)
318 PRK12727 flagellar biosynthesi 48.0 51 0.0011 39.0 7.4 53 23-76 358-412 (559)
319 PRK14719 bifunctional RNAse/5- 47.8 70 0.0015 35.9 8.3 74 336-416 7-82 (360)
320 TIGR00604 rad3 DNA repair heli 47.7 1.4E+02 0.003 36.3 11.4 62 4-66 12-83 (705)
321 COG1484 DnaC DNA replication p 47.3 22 0.00049 37.6 4.2 34 19-53 109-143 (254)
322 CHL00175 minD septum-site dete 47.2 23 0.0005 37.3 4.3 31 19-49 20-50 (281)
323 KOG1132 Helicase of the DEAD s 47.0 15 0.00033 45.1 3.1 34 2-35 21-60 (945)
324 PRK12422 chromosomal replicati 46.7 65 0.0014 37.0 8.0 13 125-137 202-214 (445)
325 PRK14964 DNA polymerase III su 46.6 41 0.00088 39.3 6.4 42 93-137 86-128 (491)
326 cd01983 Fer4_NifH The Fer4_Nif 46.5 34 0.00075 28.6 4.5 28 23-50 7-34 (99)
327 PF13361 UvrD_C: UvrD-like hel 46.5 70 0.0015 33.6 7.8 54 332-385 53-109 (351)
328 PRK13849 putative crown gall t 46.4 24 0.00053 36.7 4.2 33 19-51 6-38 (231)
329 PF06862 DUF1253: Protein of u 46.3 17 0.00037 41.8 3.2 42 90-139 130-175 (442)
330 cd02033 BchX Chlorophyllide re 46.1 22 0.00048 39.3 4.0 30 22-51 38-67 (329)
331 PRK04596 minC septum formation 46.1 11 0.00024 40.1 1.6 45 550-605 170-216 (248)
332 cd01121 Sms Sms (bacterial rad 46.0 1.2E+02 0.0027 34.0 9.9 36 19-54 86-121 (372)
333 PRK14949 DNA polymerase III su 45.9 38 0.00083 42.3 6.2 15 125-139 119-133 (944)
334 PRK00339 minC septum formation 45.6 12 0.00025 39.8 1.7 45 550-605 171-217 (249)
335 PF02606 LpxK: Tetraacyldisacc 45.4 49 0.0011 36.5 6.5 90 25-133 47-154 (326)
336 PRK12377 putative replication 45.1 28 0.00061 36.9 4.5 37 19-56 105-142 (248)
337 CHL00072 chlL photochlorophyll 45.1 24 0.00051 38.1 4.0 28 23-50 8-35 (290)
338 PRK05748 replicative DNA helic 44.7 1.2E+02 0.0025 34.8 9.6 112 15-137 201-326 (448)
339 PRK04523 N-acetylornithine car 44.5 1.1E+02 0.0025 33.9 9.2 91 4-99 148-252 (335)
340 PRK13342 recombination factor 44.1 41 0.00089 37.9 5.9 14 125-138 92-105 (413)
341 cd01523 RHOD_Lact_B Member of 43.8 43 0.00094 29.4 4.9 36 351-386 59-94 (100)
342 TIGR03600 phage_DnaB phage rep 43.7 1E+02 0.0022 34.8 8.9 113 14-137 191-317 (421)
343 PRK08116 hypothetical protein; 43.6 26 0.00056 37.4 3.9 37 18-55 117-154 (268)
344 PRK13233 nifH nitrogenase redu 43.3 29 0.00062 36.5 4.2 30 19-49 7-37 (275)
345 COG3973 Superfamily I DNA and 42.8 30 0.00066 41.3 4.5 51 19-73 230-286 (747)
346 TIGR00665 DnaB replicative DNA 42.6 1.4E+02 0.0031 33.7 9.9 111 15-137 193-317 (434)
347 PRK14948 DNA polymerase III su 42.4 40 0.00086 40.5 5.6 33 102-137 101-133 (620)
348 TIGR03158 cas3_cyano CRISPR-as 42.3 1.1E+02 0.0023 34.0 8.6 56 42-99 271-326 (357)
349 PRK07952 DNA replication prote 42.1 31 0.00068 36.4 4.2 37 17-54 101-138 (244)
350 PRK14951 DNA polymerase III su 41.9 29 0.00062 41.6 4.3 14 125-138 124-137 (618)
351 PF12846 AAA_10: AAA-like doma 41.8 65 0.0014 33.3 6.6 51 19-77 5-55 (304)
352 PRK04195 replication factor C 41.7 62 0.0013 37.4 6.9 14 125-138 98-111 (482)
353 PRK13886 conjugal transfer pro 41.6 33 0.00072 36.4 4.3 33 19-51 7-39 (241)
354 PRK13231 nitrogenase reductase 41.5 16 0.00034 38.2 1.9 29 19-49 7-35 (264)
355 PRK04516 minC septum formation 41.4 15 0.00032 38.9 1.6 46 550-606 155-202 (235)
356 cd01393 recA_like RecA is a b 41.2 79 0.0017 31.9 6.9 54 16-72 18-79 (226)
357 TIGR03018 pepcterm_TyrKin exop 41.1 33 0.00072 34.6 4.1 32 22-53 43-75 (207)
358 PRK11670 antiporter inner memb 41.0 32 0.00069 38.5 4.3 37 19-55 112-148 (369)
359 KOG1015 Transcription regulato 40.9 33 0.00072 42.9 4.6 139 17-167 698-875 (1567)
360 PRK11823 DNA repair protein Ra 40.3 1.2E+02 0.0025 35.0 8.8 88 19-140 84-171 (446)
361 PHA03333 putative ATPase subun 40.3 97 0.0021 37.8 8.2 53 19-71 191-244 (752)
362 PRK07994 DNA polymerase III su 40.1 31 0.00068 41.5 4.3 13 125-137 119-131 (647)
363 PF13344 Hydrolase_6: Haloacid 40.0 52 0.0011 29.8 4.8 38 343-380 20-58 (101)
364 PF06745 KaiC: KaiC; InterPro 40.0 71 0.0015 32.5 6.4 35 19-53 23-58 (226)
365 COG0552 FtsY Signal recognitio 39.8 2.2E+02 0.0047 31.9 10.3 105 24-171 148-252 (340)
366 COG0470 HolB ATPase involved i 39.8 45 0.00098 35.3 5.1 16 125-140 109-124 (325)
367 PHA02544 44 clamp loader, smal 39.5 41 0.0009 35.9 4.8 13 125-137 100-112 (316)
368 COG2519 GCD14 tRNA(1-methylade 38.9 59 0.0013 34.9 5.6 51 328-379 164-214 (256)
369 PF03796 DnaB_C: DnaB-like hel 38.7 1.3E+02 0.0028 31.4 8.2 112 15-137 17-142 (259)
370 PRK14958 DNA polymerase III su 38.3 35 0.00075 39.9 4.2 13 125-137 119-131 (509)
371 PRK03511 minC septum formation 38.0 17 0.00036 38.2 1.4 46 550-606 150-197 (228)
372 PRK06646 DNA polymerase III su 37.8 74 0.0016 31.5 5.8 53 332-384 8-64 (154)
373 cd02028 UMPK_like Uridine mono 37.8 40 0.00086 33.6 4.0 36 23-58 7-42 (179)
374 PRK01973 septum formation inhi 37.7 18 0.00039 39.0 1.6 46 549-605 189-236 (271)
375 COG0489 Mrp ATPases involved i 36.9 36 0.00078 36.3 3.8 33 19-51 62-94 (265)
376 PF04273 DUF442: Putative phos 36.8 98 0.0021 28.8 6.2 57 302-372 49-105 (110)
377 TIGR03877 thermo_KaiC_1 KaiC d 36.8 34 0.00074 35.4 3.5 45 19-64 25-69 (237)
378 TIGR03880 KaiC_arch_3 KaiC dom 36.0 77 0.0017 32.2 5.9 35 19-53 20-54 (224)
379 TIGR00614 recQ_fam ATP-depende 36.0 1.1E+02 0.0025 34.9 7.9 68 28-99 211-284 (470)
380 COG0003 ArsA Predicted ATPase 35.9 39 0.00084 37.3 3.9 33 23-55 10-42 (322)
381 cd02038 FleN-like FleN is a me 35.9 53 0.0011 31.1 4.4 34 20-53 5-38 (139)
382 PRK04537 ATP-dependent RNA hel 35.9 1.1E+02 0.0024 36.3 7.9 58 38-99 252-315 (572)
383 TIGR03881 KaiC_arch_4 KaiC dom 35.8 74 0.0016 32.3 5.8 36 16-51 19-56 (229)
384 PRK09302 circadian clock prote 35.8 1.9E+02 0.004 33.6 9.6 34 19-52 277-310 (509)
385 TIGR00174 miaA tRNA isopenteny 35.6 51 0.0011 35.8 4.7 70 291-361 4-97 (287)
386 KOG2036 Predicted P-loop ATPas 35.6 33 0.00071 41.5 3.4 100 21-137 281-391 (1011)
387 PRK14963 DNA polymerase III su 35.2 70 0.0015 37.5 6.0 13 125-137 116-128 (504)
388 PRK05636 replicative DNA helic 35.0 2.4E+02 0.0052 33.1 10.3 110 15-136 263-386 (505)
389 PRK14952 DNA polymerase III su 35.0 47 0.001 39.6 4.6 13 125-137 118-130 (584)
390 PHA02542 41 41 helicase; Provi 34.9 59 0.0013 37.7 5.4 45 15-59 188-237 (473)
391 PF13307 Helicase_C_2: Helicas 34.9 94 0.002 30.5 6.1 66 352-420 8-78 (167)
392 COG3598 RepA RecA-family ATPas 34.9 41 0.00089 37.5 3.8 58 19-76 93-159 (402)
393 COG0513 SrmB Superfamily II DN 34.6 2.5E+02 0.0053 32.9 10.4 65 31-99 261-331 (513)
394 PRK09183 transposase/IS protei 34.6 50 0.0011 35.0 4.4 40 15-54 100-141 (259)
395 PRK06526 transposase; Provisio 34.5 29 0.00062 36.9 2.5 36 19-54 102-137 (254)
396 PF01113 DapB_N: Dihydrodipico 34.3 1.2E+02 0.0027 28.2 6.6 108 291-412 5-124 (124)
397 PRK14960 DNA polymerase III su 34.2 63 0.0014 39.3 5.5 13 125-137 118-130 (702)
398 PF13177 DNA_pol3_delta2: DNA 34.2 1.1E+02 0.0023 30.0 6.3 59 91-172 67-129 (162)
399 PRK10876 recB exonuclease V su 34.1 91 0.002 40.3 7.3 55 15-70 16-88 (1181)
400 cd01524 RHOD_Pyr_redox Member 33.7 1E+02 0.0022 26.6 5.5 36 351-386 49-84 (90)
401 PRK02102 ornithine carbamoyltr 33.6 1.8E+02 0.0039 32.3 8.6 90 3-99 134-232 (331)
402 PRK00030 minC septum formation 33.5 22 0.00047 38.7 1.4 45 550-605 212-258 (292)
403 PRK08691 DNA polymerase III su 33.4 65 0.0014 39.3 5.4 34 101-137 98-131 (709)
404 PRK05896 DNA polymerase III su 33.3 56 0.0012 39.2 4.9 42 93-137 89-131 (605)
405 PRK04837 ATP-dependent RNA hel 33.3 1.4E+02 0.0031 33.5 8.0 57 39-99 251-313 (423)
406 PRK07471 DNA polymerase III su 32.9 98 0.0021 34.7 6.5 22 19-40 45-67 (365)
407 KOG1131 RNA polymerase II tran 32.8 59 0.0013 38.3 4.7 39 4-42 18-64 (755)
408 smart00450 RHOD Rhodanese Homo 32.6 72 0.0016 26.8 4.3 36 351-386 54-90 (100)
409 TIGR03345 VI_ClpV1 type VI sec 32.6 60 0.0013 40.4 5.2 32 19-52 600-631 (852)
410 PRK04804 minC septum formation 32.6 23 0.00051 36.8 1.5 45 550-605 142-188 (221)
411 PHA03372 DNA packaging termina 32.6 1.4E+02 0.0031 36.0 7.9 55 19-73 206-263 (668)
412 COG0378 HypB Ni2+-binding GTPa 32.5 68 0.0015 33.2 4.7 50 24-79 22-72 (202)
413 TIGR02655 circ_KaiC circadian 32.5 1.8E+02 0.0038 33.8 8.7 44 19-63 267-310 (484)
414 PRK11519 tyrosine kinase; Prov 32.3 43 0.00093 40.7 3.8 33 20-52 532-564 (719)
415 PRK07667 uridine kinase; Provi 32.2 57 0.0012 32.7 4.2 38 21-59 23-61 (193)
416 PF10861 DUF2784: Protein of U 31.8 26 0.00055 33.0 1.4 19 572-590 57-75 (112)
417 PF02670 DXP_reductoisom: 1-de 31.8 99 0.0021 29.8 5.4 76 291-385 3-78 (129)
418 PF10609 ParA: ParA/MinD ATPas 31.7 85 0.0018 28.0 4.6 60 19-82 5-64 (81)
419 CHL00095 clpC Clp protease ATP 31.6 41 0.00088 41.6 3.5 29 19-49 543-571 (821)
420 KOG0926 DEAH-box RNA helicase 31.6 37 0.00081 41.7 3.0 81 290-376 416-504 (1172)
421 COG1198 PriA Primosomal protei 31.6 1.3E+02 0.0028 37.0 7.6 72 340-412 232-305 (730)
422 COG1074 RecB ATP-dependent exo 31.5 73 0.0016 41.0 5.8 54 15-69 16-79 (1139)
423 PRK08939 primosomal protein Dn 31.3 60 0.0013 35.4 4.4 38 17-55 158-196 (306)
424 COG0794 GutQ Predicted sugar p 31.1 3.8E+02 0.0083 27.9 9.8 85 12-101 35-140 (202)
425 COG1565 Uncharacterized conser 31.0 1E+02 0.0022 34.8 6.1 49 18-67 80-133 (370)
426 PRK09200 preprotein translocas 31.0 1.5E+02 0.0032 36.9 8.0 55 41-99 426-484 (790)
427 PRK14965 DNA polymerase III su 30.8 95 0.0021 36.9 6.3 13 125-137 119-131 (576)
428 PF01935 DUF87: Domain of unkn 30.7 58 0.0013 33.1 4.0 40 16-55 23-64 (229)
429 PRK09841 cryptic autophosphory 30.5 46 0.00099 40.5 3.7 33 20-52 537-569 (726)
430 TIGR01222 minC septum site-det 30.5 28 0.00061 36.0 1.7 45 550-605 140-186 (217)
431 TIGR03878 thermo_KaiC_2 KaiC d 30.5 1.3E+02 0.0027 31.9 6.6 34 19-52 40-73 (259)
432 PRK13107 preprotein translocas 30.4 1.6E+02 0.0035 37.0 8.2 54 42-99 448-505 (908)
433 PRK14969 DNA polymerase III su 30.4 53 0.0012 38.6 4.1 13 125-137 119-131 (527)
434 PRK11192 ATP-dependent RNA hel 30.2 1.5E+02 0.0032 33.4 7.4 54 42-99 244-303 (434)
435 PF06823 DUF1236: Protein of u 30.2 45 0.00098 28.4 2.5 22 227-248 40-61 (65)
436 PRK05564 DNA polymerase III su 29.9 2.4E+02 0.0051 30.5 8.7 49 101-172 72-120 (313)
437 PRK11057 ATP-dependent DNA hel 29.8 1.3E+02 0.0029 35.8 7.3 60 37-100 230-295 (607)
438 TIGR00416 sms DNA repair prote 29.8 2.9E+02 0.0064 31.9 9.8 35 19-53 98-132 (454)
439 PF07015 VirC1: VirC1 protein; 29.7 66 0.0014 34.0 4.2 38 20-57 7-46 (231)
440 PRK06835 DNA replication prote 29.7 62 0.0013 35.8 4.2 35 19-54 187-222 (329)
441 COG3640 CooC CO dehydrogenase 29.5 55 0.0012 35.0 3.5 44 23-75 8-52 (255)
442 cd00079 HELICc Helicase superf 29.3 2.8E+02 0.006 24.6 7.8 55 42-100 27-87 (131)
443 PF00148 Oxidored_nitro: Nitro 29.2 2.7E+02 0.0058 30.9 9.2 59 44-103 145-204 (398)
444 TIGR01005 eps_transp_fam exopo 29.2 51 0.0011 40.1 3.8 34 19-52 551-584 (754)
445 PRK03515 ornithine carbamoyltr 29.2 2.1E+02 0.0046 31.8 8.2 88 3-99 133-233 (336)
446 cd03028 GRX_PICOT_like Glutare 29.0 1.9E+02 0.0041 25.3 6.5 51 353-404 7-63 (90)
447 KOG0739 AAA+-type ATPase [Post 28.9 1.6E+02 0.0035 32.7 7.0 94 248-363 127-234 (439)
448 cd01123 Rad51_DMC1_radA Rad51_ 28.8 1.8E+02 0.0039 29.4 7.2 54 16-72 18-79 (235)
449 PF05889 SLA_LP_auto_ag: Solub 28.4 78 0.0017 36.0 4.7 89 308-406 120-214 (389)
450 PRK14962 DNA polymerase III su 28.3 88 0.0019 36.3 5.3 13 125-137 117-129 (472)
451 PTZ00007 (NAP-L) nucleosome as 28.3 1.5E+02 0.0032 33.2 6.7 46 632-677 43-88 (337)
452 KOG1132 Helicase of the DEAD s 27.9 44 0.00096 41.3 2.9 48 86-143 217-264 (945)
453 TIGR01389 recQ ATP-dependent D 27.9 1.6E+02 0.0034 34.8 7.5 62 35-100 216-283 (591)
454 PF00956 NAP: Nucleosome assem 27.8 1.8E+02 0.0038 30.5 7.1 45 633-677 5-49 (244)
455 PRK05563 DNA polymerase III su 27.8 92 0.002 36.9 5.5 13 125-137 119-131 (559)
456 TIGR00635 ruvB Holliday juncti 27.6 88 0.0019 33.2 4.8 13 125-137 81-93 (305)
457 PHA02535 P terminase ATPase su 27.5 2.7E+02 0.0058 33.4 9.1 54 19-72 157-212 (581)
458 COG2805 PilT Tfp pilus assembl 27.4 55 0.0012 36.3 3.2 36 16-53 125-162 (353)
459 TIGR02524 dot_icm_DotB Dot/Icm 27.4 90 0.0019 34.9 5.0 39 15-53 133-173 (358)
460 PRK11034 clpA ATP-dependent Cl 27.4 81 0.0018 38.8 5.0 13 125-137 557-569 (758)
461 COG2804 PulE Type II secretory 27.2 52 0.0011 38.4 3.2 36 16-53 258-294 (500)
462 PRK11776 ATP-dependent RNA hel 27.2 1.9E+02 0.004 32.9 7.6 59 37-99 236-300 (460)
463 cd01521 RHOD_PspE2 Member of t 27.1 1E+02 0.0022 27.8 4.5 36 351-386 62-99 (110)
464 TIGR03815 CpaE_hom_Actino heli 26.8 78 0.0017 34.2 4.3 34 19-52 98-131 (322)
465 PRK09165 replicative DNA helic 26.7 2.3E+02 0.0051 33.0 8.4 112 14-137 214-353 (497)
466 PF15609 PRTase_2: Phosphoribo 26.6 1.1E+02 0.0024 31.5 5.0 53 25-77 132-184 (191)
467 PF13086 AAA_11: AAA domain; P 26.4 32 0.0007 33.9 1.2 39 88-138 167-205 (236)
468 PRK13768 GTPase; Provisional 26.3 73 0.0016 33.6 3.9 30 22-52 9-39 (253)
469 PRK05177 minC septum formation 26.2 35 0.00076 36.0 1.5 45 550-605 161-207 (239)
470 PF13614 AAA_31: AAA domain; P 26.2 89 0.0019 29.4 4.2 44 22-73 8-51 (157)
471 PRK10917 ATP-dependent DNA hel 26.2 2.5E+02 0.0055 34.0 8.9 75 336-411 293-372 (681)
472 cd00046 DEXDc DEAD-like helica 26.2 4.1E+02 0.0089 23.0 8.3 56 352-411 29-87 (144)
473 PRK06731 flhF flagellar biosyn 25.9 1.6E+02 0.0034 31.8 6.3 52 23-75 83-134 (270)
474 PLN02229 alpha-galactosidase 25.9 3.7E+02 0.008 31.1 9.5 117 217-361 88-216 (427)
475 PF09413 DUF2007: Domain of un 25.6 83 0.0018 25.9 3.4 29 357-385 3-31 (67)
476 PRK14805 ornithine carbamoyltr 25.5 3.4E+02 0.0074 29.7 8.9 88 3-99 126-222 (302)
477 PRK10436 hypothetical protein; 25.4 1E+02 0.0023 35.7 5.2 37 15-53 217-254 (462)
478 KOG0342 ATP-dependent RNA heli 25.3 2E+02 0.0043 33.8 7.2 82 561-654 401-482 (543)
479 PRK09111 DNA polymerase III su 25.3 1.4E+02 0.003 35.8 6.4 35 100-137 110-144 (598)
480 COG1196 Smc Chromosome segrega 25.3 68 0.0015 41.3 4.1 79 57-143 1016-1105(1163)
481 TIGR01279 DPOR_bchN light-inde 25.3 3.6E+02 0.0078 30.5 9.4 91 283-384 78-186 (407)
482 PTZ00035 Rad51 protein; Provis 24.9 1.6E+02 0.0035 32.6 6.4 101 17-138 118-226 (337)
483 TIGR00643 recG ATP-dependent D 24.9 2.9E+02 0.0062 33.2 8.9 74 337-411 268-346 (630)
484 PRK07399 DNA polymerase III su 24.8 4.8E+02 0.01 28.6 10.0 28 125-172 124-151 (314)
485 cd01528 RHOD_2 Member of the R 24.8 1.7E+02 0.0037 25.7 5.5 36 351-386 56-92 (101)
486 PTZ00424 helicase 45; Provisio 24.7 2E+02 0.0044 31.6 7.2 62 34-99 258-325 (401)
487 PRK09112 DNA polymerase III su 24.4 2.3E+02 0.0049 31.7 7.4 13 125-137 141-153 (351)
488 PRK14954 DNA polymerase III su 24.4 4.8E+02 0.01 31.5 10.6 13 125-137 127-139 (620)
489 PRK04328 hypothetical protein; 24.3 1.7E+02 0.0036 30.7 6.1 35 19-53 27-61 (249)
490 PRK10590 ATP-dependent RNA hel 24.0 2.5E+02 0.0054 32.1 7.9 55 41-99 243-303 (456)
491 cd01529 4RHOD_Repeats Member o 24.0 1.4E+02 0.0029 26.0 4.6 36 351-386 54-90 (96)
492 cd01126 TraG_VirD4 The TraG/Tr 24.0 58 0.0013 36.1 2.8 55 19-79 3-57 (384)
493 TIGR01448 recD_rel helicase, p 23.9 2.2E+02 0.0047 35.0 7.7 57 5-62 326-387 (720)
494 PF02698 DUF218: DUF218 domain 23.9 4.2E+02 0.0091 25.1 8.4 75 333-411 20-106 (155)
495 KOG0953 Mitochondrial RNA heli 23.7 75 0.0016 37.8 3.6 89 23-143 199-292 (700)
496 PF13245 AAA_19: Part of AAA d 23.7 1.2E+02 0.0026 26.2 4.0 36 338-373 23-62 (76)
497 PRK06645 DNA polymerase III su 23.6 1.1E+02 0.0023 36.0 4.9 34 101-137 107-140 (507)
498 cd01534 4RHOD_Repeat_3 Member 23.4 1.2E+02 0.0026 26.4 4.2 35 352-386 55-89 (95)
499 PRK14959 DNA polymerase III su 23.4 1.2E+02 0.0025 36.7 5.2 13 125-137 119-131 (624)
500 PF06564 YhjQ: YhjQ protein; 23.3 1.1E+02 0.0023 32.7 4.4 32 19-51 6-38 (243)
No 1
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-203 Score=1733.92 Aligned_cols=682 Identities=53% Similarity=0.832 Sum_probs=611.6
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+++||+|++||.|++|||||+|||||+||++||+|||+|||||||++.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||||||||||+...+...|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc------CCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 161 ~~~~i~~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.++++++.|.+ +.||.+|++.++++||++|+.++|++++++|||++.++|.|||.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999987 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
|+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
.||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.|+++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 005155 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (711)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (711)
+||++||++|+||||||||||||||+|||||+++++..++..+.+......+..... ......+ .++.+++
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~--- 551 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPP---VPLQRGL---KGGQGFG--- 551 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccc---ccccccc---ccccccc---
Confidence 999999999999999999999999999999999999887654333222211110000 0000000 0111111
Q ss_pred HHHHHHhhhccccCCchhhhhhhhc---chhhhhhhhhhhHHHHHHHh------------------hhhccCCCCChhhH
Q 005155 475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKLI------------------DKQSAMYPLGPTVA 533 (711)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 533 (711)
...+++.+.|..+.+.-+ +++....+....-..+.+.. ............++
T Consensus 552 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 552 -------PKAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred -------cccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 125667889988776422 11111111100000011000 00011123345688
Q ss_pred HHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHH
Q 005155 534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 613 (711)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~ 613 (711)
.+|..++++++..|.+++++|+++|||||||||||||||||||||||||||||||||||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005155 614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693 (711)
Q Consensus 614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~ 693 (711)
+|+++++++++||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999954 58999999999999
Q ss_pred HHHHHhhcCCCc
Q 005155 694 VDEIIFGNVDPL 705 (711)
Q Consensus 694 ~~~~~~~~~~~~ 705 (711)
|+++++.|.++.
T Consensus 781 i~~~v~~~~~~~ 792 (939)
T PRK12902 781 MDEIVEAYVNPD 792 (939)
T ss_pred HHHHHHHhcCCc
Confidence 999999987653
No 2
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=100.00 E-value=1.1e-194 Score=1664.30 Aligned_cols=658 Identities=50% Similarity=0.793 Sum_probs=595.3
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||+|+|||+||++||+|||+|||||||++.++
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+.+...|.
T Consensus 155 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r---~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~ 231 (870)
T CHL00122 155 MSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQR---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI 231 (870)
T ss_pred CChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcc---ccceeeeecchhheeccCCCceeccCCCccchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
.++++++.|.++.||.+|++.|+++||++|+.++|+++++++||+..++|.++|.+||+|+++|++|+||||+||+|+||
T Consensus 232 ~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iV 311 (870)
T CHL00122 232 VADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311 (870)
T ss_pred HHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 99999999999899999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCC
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNL 320 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~ 320 (711)
|++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++||||+
T Consensus 312 De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk 391 (870)
T CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391 (870)
T ss_pred ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhc
Q 005155 321 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 400 (711)
Q Consensus 321 p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~A 400 (711)
|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|.+.||||+||||++.++++||+||++|
T Consensus 392 p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A 471 (870)
T CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA 471 (870)
T ss_pred CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999755679999999999
Q ss_pred CCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHH
Q 005155 401 GRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480 (711)
Q Consensus 401 G~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (711)
|++|+||||||||||||||+|||||++|++..++..+.+.......... +..+.
T Consensus 472 G~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------- 525 (870)
T CHL00122 472 GRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTI---SQNFL----------------------- 525 (870)
T ss_pred CCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccc---cccch-----------------------
Confidence 9999999999999999999999999999998876554432211100000 00000
Q ss_pred hhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhh-hhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLID-KQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
..-.|...+.+..-...++. ......++ ...+..+....++.+|...++++++.|.+++++|+++||
T Consensus 526 ------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GG 593 (870)
T CHL00122 526 ------NILNSLKNDLKFLSLSDFEN------LKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGG 593 (870)
T ss_pred ------hhhhhcccchhhhccccccc------ccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCC
Confidence 00011111110000000000 00000000 001122233458999999999999999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|+++++ +++||++++++++|++||
T Consensus 594 L~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~l~~~f~--~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ 670 (870)
T CHL00122 594 LYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG--GDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQ 670 (870)
T ss_pred CEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccHHHHhhC--hHHHHHHHHHhCC-CCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999 899999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|++||++ +++.+++.+|++++++++++ |.++.
T Consensus 671 ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~-~~~~~ 733 (870)
T CHL00122 671 KKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES--QSLRDWILAYGEQVIDDIIT-FLKSR 733 (870)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 99999999999999999999999999999999999954 68999999999999999999 77543
No 3
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.9e-195 Score=1673.04 Aligned_cols=566 Identities=49% Similarity=0.740 Sum_probs=542.8
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~- 79 (711)
|||||||++||++||+|+||||+||||||||++||+|||||.|++|||||+|||||+||++||+|+|+||||||||+..
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC-ccc
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VAR 158 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~-~~~ 158 (711)
+|++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR---~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~~~ 324 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR---KHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQE 324 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCc---CCceeEeechhhhhhccccCcEEEeCCCCCccHHH
Confidence 789999999999999999999999999999999999999999 9999999999999999999999999997655 477
Q ss_pred hHHHHHHHHHc------------------------------------------------cc-------------------
Q 005155 159 YPVAAKVAELL------------------------------------------------VQ------------------- 171 (711)
Q Consensus 159 y~~~~~i~~~l------------------------------------------------~~------------------- 171 (711)
|..++.++..| .+
T Consensus 325 y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~~n~ 404 (1112)
T PRK12901 325 FEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQDNN 404 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 87777655444 22
Q ss_pred --------CCCeEEeCCCCeeeecHhhHHHHHH------hc----------CCCCCCC------------------CCCc
Q 005155 172 --------GLHYTVELKNNSVELTEEGIALAEM------AL----------ETNDLWD------------------ENDP 209 (711)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~------~~----------~~~~L~~------------------~~~~ 209 (711)
+.||.+|++.++++||+.|+.+++. +| +++++|+ .+..
T Consensus 405 ~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~~~~ 484 (1112)
T PRK12901 405 REMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSVKSE 484 (1112)
T ss_pred hcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhhHhH
Confidence 3599999999999999999999988 77 7778876 2235
Q ss_pred hHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcC
Q 005155 210 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP 289 (711)
Q Consensus 210 ~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~ 289 (711)
+.|+|.+||+|+.+|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+
T Consensus 485 ~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~ 564 (1112)
T PRK12901 485 RVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYH 564 (1112)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHH
Q 005155 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369 (711)
Q Consensus 290 kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~L 369 (711)
||+||||||+||+.||+++|||+|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.|
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccc
Q 005155 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 449 (711)
Q Consensus 370 s~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (711)
|++|+..||||+|||| ++|++||+||++||++|+||||||||||||||+||
T Consensus 645 S~~L~~~gI~H~VLNA--K~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg--------------------------- 695 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------------- 695 (1112)
T ss_pred HHHHHHcCCcHHHhhc--cchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc---------------------------
Confidence 9999999999999999 68999999999999999999999999999999998
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCC
Q 005155 450 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 529 (711)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (711)
T Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T PRK12901 696 -------------------------------------------------------------------------------- 695 (1112)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCch
Q 005155 530 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~ 609 (711)
++|+++|||||||||||||||||||||||||||||||||+|||||||||||+|| ++
T Consensus 696 ----------------------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fg--s~ 751 (1112)
T PRK12901 696 ----------------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFG--SE 751 (1112)
T ss_pred ----------------------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhC--cH
Confidence 478999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005155 610 WAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQY 689 (711)
Q Consensus 610 ~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~ 689 (711)
++.++|.++++++|+||+|+|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+|
T Consensus 752 ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~--~~l~~~i~~~ 829 (1112)
T PRK12901 752 RIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG--ERLGMDIANM 829 (1112)
T ss_pred HHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 5899999999
Q ss_pred HHHHHHHHHhhcCCC
Q 005155 690 MQAVVDEIIFGNVDP 704 (711)
Q Consensus 690 ~~~~~~~~~~~~~~~ 704 (711)
++++++++++.|.+.
T Consensus 830 i~~~i~~~v~~~~~~ 844 (1112)
T PRK12901 830 IYDVCEAIVENNKVA 844 (1112)
T ss_pred HHHHHHHHHHHhcCh
Confidence 999999999987653
No 4
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-192 Score=1637.80 Aligned_cols=562 Identities=48% Similarity=0.763 Sum_probs=549.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+||||||||++||+||+||+|++|||||+|||||+||++||+|||+|||||||+|.++
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~ 156 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN 156 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+.+|.||||||||++||||||||||+.+.+++||| +++||||||||||||||||||||||||.+..+.+|.
T Consensus 157 ~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR---~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~ 233 (925)
T PRK12903 157 MDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL 233 (925)
T ss_pred CChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCc---ccceeeeccchheeecccCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.++ ||.+|++.|+++||++|+.++|++|++.+||+..+ .|.|||.+||+|+++|++|+||||+||+|+|
T Consensus 234 ~~~~~v~~L~~~-dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~I 312 (925)
T PRK12903 234 AADQFVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIEL 312 (925)
T ss_pred HHHHHHHhcccc-ceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 999999999865 99999999999999999999999999999999876 7999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+||||||||||||+|++|++|+|+||||||||+|+||+||||||++|+.||+++||++|++||||
T Consensus 313 VDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn 392 (925)
T PRK12903 313 VDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN 392 (925)
T ss_pred EECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||.+|++.||||+|||| ++|++||+||++
T Consensus 393 kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA--k~~e~EA~IIa~ 470 (925)
T PRK12903 393 KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAK 470 (925)
T ss_pred CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc--cchhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+||
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg--------------------------------------------------------- 493 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLS--------------------------------------------------------- 493 (925)
T ss_pred CCCCCeEEEecccccCCcCccCc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
++|+++||
T Consensus 494 ------------------------------------------------------------------------~~V~~~GG 501 (925)
T PRK12903 494 ------------------------------------------------------------------------KEVLELGG 501 (925)
T ss_pred ------------------------------------------------------------------------hhHHHcCC
Confidence 36889999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCc-hHHHHHHHhcCCCCCCcccchHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT-SWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (711)
|||||||||||||||||||||||||||||||+|||||||+|||+|| + +++.++|.+++++ ||++++++++|++|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~--~~~ri~~~~~~l~~~---~i~~~~i~~~ie~A 576 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFS--NFDKIKEAFKKLGDD---EIKSKFFSKALLNA 576 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhC--CHHHHHHHHHhcCCC---cccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8 9999999999863 99999999999999
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
|++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++|+++++.|.++
T Consensus 577 QkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~ 640 (925)
T PRK12903 577 QKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA--DDLSHVIEKMISRAVEQILKNSFII 640 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999954 6899999999999999999988764
No 5
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-190 Score=1634.39 Aligned_cols=596 Identities=47% Similarity=0.746 Sum_probs=568.3
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|+++.++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.++++.||| +++||||||||||||||||||||||||.+.....|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr---~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~ 237 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR---ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI 237 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhccc---ccceeEechhhheeccccCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999988899999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc-----------CCCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQ-----------GLHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~-----------~~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|.+ +.||.+|++.++++||+.|+.++|+++ ++ .+||+..+ .+.+||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 238 EINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 99999999954 359999999999999999999999987 55 67898776 7899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|++.||||+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
|||| ++|++||+||++||++|+||||||||||||||+|||||++.++ . + + +
T Consensus 478 VLNA--k~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~----~-~-~----~----------------- 528 (913)
T PRK13103 478 VLNA--KYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA----A-L-E----N----------------- 528 (913)
T ss_pred Hhcc--ccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHH----h-h-h----h-----------------
Confidence 9999 6899999999999999999999999999999999999986321 0 0 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
.-...++
T Consensus 529 -------------------------------------------------------------------------~~~~~~~ 535 (913)
T PRK13103 529 -------------------------------------------------------------------------PTPEQIA 535 (913)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0012345
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||++|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg--~~~~~~~~~~~~~~ 613 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFA--SDRVKNFMKALGMQ 613 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhC--cHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~ 691 (913)
T PRK13103 614 SGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA--ENIGETIAEFREEVLNATISQH 691 (913)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 5899999999999999999988
Q ss_pred CCCc
Q 005155 702 VDPL 705 (711)
Q Consensus 702 ~~~~ 705 (711)
.++.
T Consensus 692 ~~~~ 695 (913)
T PRK13103 692 IPPQ 695 (913)
T ss_pred cCCc
Confidence 7543
No 6
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-186 Score=1597.77 Aligned_cols=595 Identities=46% Similarity=0.720 Sum_probs=567.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||+|||++|||||+++.++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.++++.||| +++||||||||||||||||||||||||.+...+.|.
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr---~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~ 237 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI 237 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcc---ccceeeecchhhhccccCCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999998899999 999999999999999999999999999988888999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|.+. .||.+|++.++++||++|+.++|+++ ++ ++||+..+ .|.|||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 238 KINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 999999988742 59999999999999999999999987 54 68998766 6899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||.+|++.|++|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
+||| +++++|++||++||++|+||||||||||||||+|||||++.++ . +. + +
T Consensus 478 vLna--k~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~----~-----~~-~-~--------------- 529 (908)
T PRK13107 478 VLNA--KFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE----A-----LE-N-P--------------- 529 (908)
T ss_pred eccC--cccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhh----h-----hc-c-h---------------
Confidence 9999 5789999999999999999999999999999999999987211 0 00 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
-...++
T Consensus 530 --------------------------------------------------------------------------~~~~~~ 535 (908)
T PRK13107 530 --------------------------------------------------------------------------TAEQKA 535 (908)
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 012355
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+|||+|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~--~~~~~~~~~~~~~~ 613 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA--SDRVSGMMKKLGME 613 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhC--hHHHHHHHHHcCCC
Confidence 6788899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||++||++||++||+|++||+|||.||++||++|+.+|++ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~ 691 (908)
T PRK13107 614 EGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA--ESIEDTIKNIQDDVINGVIDQY 691 (908)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 5899999999999999999987
Q ss_pred CCC
Q 005155 702 VDP 704 (711)
Q Consensus 702 ~~~ 704 (711)
+++
T Consensus 692 ~~~ 694 (908)
T PRK13107 692 IPP 694 (908)
T ss_pred cCC
Confidence 643
No 7
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-185 Score=1565.48 Aligned_cols=554 Identities=42% Similarity=0.633 Sum_probs=532.2
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+|+|++|||+|+++.++
T Consensus 77 ~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~ 156 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEE 156 (764)
T ss_pred CCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+.. ..|.
T Consensus 157 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R---~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~ 232 (764)
T PRK12326 157 STPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSP---NPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG 232 (764)
T ss_pred CCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCC---ccceeeecchhhheeccccCceeeeCCCcch-hHHH
Confidence 99999999999999999999999999999999998899999 9999999999999999999999999999887 8999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC--chHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
.+++++..|.++.||.+|++.|+++||++|+.++|+++++.++|+..+ .+.++|++||+|+++|++|+||||+||+|+
T Consensus 233 ~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~ 312 (764)
T PRK12326 233 EIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312 (764)
T ss_pred HHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEE
Confidence 999999999998999999999999999999999999999999998876 578999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 313 iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPt 392 (764)
T PRK12326 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPP 392 (764)
T ss_pred EEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH
Q 005155 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
|+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||++||.||.+|++.||||+|||| +++++||+||+
T Consensus 393 nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA--k~~~~EA~IIa 470 (764)
T PRK12326 393 NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIA 470 (764)
T ss_pred CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc--CchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred hcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 005155 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (711)
+||++|+||||||||||||||+|||||+
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~---------------------------------------------------- 498 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDE---------------------------------------------------- 498 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcc----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred HHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcC
Q 005155 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (711)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (711)
+++++|+++|
T Consensus 499 ----------------------------------------------------------------------~~~~~V~~~G 508 (764)
T PRK12326 499 ----------------------------------------------------------------------ADRDRVAELG 508 (764)
T ss_pred ----------------------------------------------------------------------cchHHHHHcC
Confidence 1237899999
Q ss_pred CeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHH
Q 005155 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (711)
Q Consensus 559 GL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (711)
||||||||||||+|||||||||||||||||||+||||||||||++|| +++ + .+.++++++||++++++++|++|
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~--~~~--~--~~~~~~~~~~i~~~~~~~~i~~a 582 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANL--AGE--K--LPAQPDEDGRITSPKAADLVDHA 582 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcC--chh--h--hhcCCCCCCcCcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 774 1 23477889999999999999999
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005155 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYM 690 (711)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~ 690 (711)
|++||++||++||++++||+|||.||++||++|++||++ +++.+.+...+
T Consensus 583 Qk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~ 632 (764)
T PRK12326 583 QRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT--DTAWEELAELA 632 (764)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHH
Confidence 999999999999999999999999999999999999954 46554443333
No 8
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-184 Score=1589.06 Aligned_cols=596 Identities=45% Similarity=0.711 Sum_probs=568.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.|||+||||++||||||||+|+.+.++.||| +++|+||||||||||||||||||||||.+.+.++|.
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r---~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~ 237 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQR---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI 237 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcc---ccceEEeccHhhhhhhccCCceeeeCCCccchHHHH
Confidence 99999999999999999999999999999999888888998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccC------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHHHHhcc
Q 005155 161 VAAKVAELLVQG------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAKEFYRR 226 (711)
Q Consensus 161 ~~~~i~~~l~~~------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~~l~~~ 226 (711)
.++.++..|.++ .||.+|++.++++||++|+.++|+++ ++ ++||+..+ .+.|||.+||+|+++|++
T Consensus 238 ~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 238 KINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcC
Confidence 999999999876 69999999999999999999999988 66 68998665 699999999999999999
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
|+||||+||+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|+||+||||||+|++.||+
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.||++|++.||+|++|||
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna- 476 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA- 476 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhc
Q 005155 387 PKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLG 466 (711)
Q Consensus 387 ~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (711)
+++++|++||++||++|+||||||||||||||+|||||++..+ +. +.
T Consensus 477 -k~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~----~~---------~~------------------- 523 (896)
T PRK13104 477 -KFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA----NL---------PA------------------- 523 (896)
T ss_pred -CCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh----cc---------cc-------------------
Confidence 5889999999999999999999999999999999999986211 00 00
Q ss_pred chhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhcccc
Q 005155 467 SSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVH 546 (711)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (711)
+ .-...+++++..
T Consensus 524 --------------------~-----------------------------------------------~~~~~~~~~~~~ 536 (896)
T PRK13104 524 --------------------D-----------------------------------------------ASEQEKEAVKKE 536 (896)
T ss_pred --------------------c-----------------------------------------------hhhHHHHHHHHH
Confidence 0 002345667888
Q ss_pred ccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcc
Q 005155 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPI 626 (711)
Q Consensus 547 ~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i 626 (711)
|.+++++|+++|||||||||||||||||||||||||||||||||+||||||||||++|| ++++.++|+++++++++||
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i 614 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVASMMRRLGMQPGEPI 614 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhC--hHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 627 EGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 627 ~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
++++++++|++||+++|++||++||++++||+|||.||++||++|++||++ +++.+.+..|++++|+++++.|.++
T Consensus 615 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~ 690 (896)
T PRK13104 615 EHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM--TDTQEVVEMMREEVMDSLVDTYIPP 690 (896)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999954 5889999999999999999988643
No 9
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.7e-183 Score=1579.01 Aligned_cols=597 Identities=52% Similarity=0.827 Sum_probs=576.7
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||||+||+|++||.|++|||||||+|||+||++||+++|++|||+|++++++
T Consensus 80 ~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~ 159 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSG 159 (830)
T ss_pred CCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.+.++.++| +++|||||||||||||||+||||||||.+.++++|.
T Consensus 160 ~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r---~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~ 236 (830)
T PRK12904 160 MSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQR---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236 (830)
T ss_pred CCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccc---ccceEEEechhhheeccCCCceeeECCCCcccHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.++.||.+|++.|+++||++|+.++|+++++++||+..+ +|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 237 ~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~i 316 (830)
T PRK12904 237 RANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316 (830)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988899999999999999999999999999999999876 7899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||++|++||+++||++|++||||
T Consensus 317 vDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 396 (830)
T PRK12904 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN 396 (830)
T ss_pred EECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||.||+++|.++|.+||||||||.|++.||.|+..|.+.|++|++||| +++++|++|+++
T Consensus 397 kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~ 474 (830)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQ 474 (830)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+|||||+++|+..+..
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~-------------------------------------------- 510 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------- 510 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhh--------------------------------------------
Confidence 999999999999999999999999999999855321
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
.+...++++++.|.+++++|+++||
T Consensus 511 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 511 -------------------------------------------------------ETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 0122355677889999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||||+||||||||||+.|| ++++.++|.++++++++||++++++++|++||
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 613 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFG--SDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQ 613 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhc--hHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++|+++++.|.++.
T Consensus 614 ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~ 677 (830)
T PRK12904 614 KKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG--EDLSETILDMREDVIEDLVDAYIPPG 677 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999954 58999999999999999999888654
No 10
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-180 Score=1556.66 Aligned_cols=564 Identities=49% Similarity=0.789 Sum_probs=534.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++||++||+|+||||+||||||||++||+|||||+|++|||||+|||||+||++||+|+|+|||||||||.++
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~ 216 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNT 216 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC-ccch
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VARY 159 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~-~~~y 159 (711)
|++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...|
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR---~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y 293 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR---DFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKF 293 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhcc---CCceEEEechhhhhhccccCceEEeCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999996655 5566
Q ss_pred HHHH-------------------------------------------------HHHHHccc-------------------
Q 005155 160 PVAA-------------------------------------------------KVAELLVQ------------------- 171 (711)
Q Consensus 160 ~~~~-------------------------------------------------~i~~~l~~------------------- 171 (711)
..++ .+++.|.+
T Consensus 294 ~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~ 373 (1025)
T PRK12900 294 QEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNS 373 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhh
Confidence 5443 22222332
Q ss_pred --------CCCeEEeCCCCeeeecHhhHHHHHHhcC--------------------------------CCC---CCCCCC
Q 005155 172 --------GLHYTVELKNNSVELTEEGIALAEMALE--------------------------------TND---LWDEND 208 (711)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~--------------------------------~~~---L~~~~~ 208 (711)
+.||.+|++.++++||++|++++++++. .++ +|+...
T Consensus 374 ~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~ 453 (1025)
T PRK12900 374 SRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERS 453 (1025)
T ss_pred hhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhh
Confidence 2489999999999999999999998531 123 444445
Q ss_pred chHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhc
Q 005155 209 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 209 ~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y 288 (711)
.+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|
T Consensus 454 ~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y 533 (1025)
T PRK12900 454 ERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLY 533 (1025)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~ 368 (711)
+||+||||||+||+.||+++|+|+|++||||+|++|+|+||.||.|..+||.||+++|.+.|.+||||||||+|++.||.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhccc
Q 005155 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV 448 (711)
Q Consensus 369 Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (711)
|+.+|++.||+|++||| +|+++|++|+++||++|+||||||||||||||+||
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~-------------------------- 665 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 665 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc--------------------------
Confidence 99999999999999999 68999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCC
Q 005155 449 EVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPL 528 (711)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (711)
T Consensus 666 -------------------------------------------------------------------------------- 665 (1025)
T PRK12900 666 -------------------------------------------------------------------------------- 665 (1025)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCc
Q 005155 529 GPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 608 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~ 608 (711)
++|.++||||||||+||||+|||+||+||||||||||+|+||+|+||+|||.|| +
T Consensus 666 -----------------------~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~--~ 720 (1025)
T PRK12900 666 -----------------------EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG--S 720 (1025)
T ss_pred -----------------------cchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC--c
Confidence 368889999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005155 609 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQ 688 (711)
Q Consensus 609 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~ 688 (711)
+++.++|.+++.++++||+++|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+
T Consensus 721 ~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~lleyDdv~n~QR~vIY~~R~~~L~~--~~~~~~i~~ 798 (1025)
T PRK12900 721 DRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNGLIK--ERLTSDIFD 798 (1025)
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999954 589999999
Q ss_pred HHHHHHHHHHhhcC
Q 005155 689 YMQAVVDEIIFGNV 702 (711)
Q Consensus 689 ~~~~~~~~~~~~~~ 702 (711)
|++++++++++.|.
T Consensus 799 ~~~~~~~~~v~~~~ 812 (1025)
T PRK12900 799 LLRDYCDTVVKKYH 812 (1025)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
No 11
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.4e-181 Score=1542.11 Aligned_cols=571 Identities=53% Similarity=0.844 Sum_probs=558.9
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||.|.|+||+|||||||+++||+|+|||.|++|||||+|||||+||++||+|+|+|||||||++.++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+++|.|||||+||+|||||||||||+.+.++.||| +++|+||||||||||||||||||||||....+.+|.
T Consensus 159 m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr---~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~ 235 (822)
T COG0653 159 MSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQR---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK 235 (822)
T ss_pred CChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhc---cCCeEEEcchhheeeeccccceeeecccccCchHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.+..||++|++.|+++||++|+.++|++|++.+||+.++ .+.|++++||+|+.+|.+|+||||+||+|+|
T Consensus 236 ~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~I 315 (822)
T COG0653 236 KVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315 (822)
T ss_pred HHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEE
Confidence 999999999988899999999999999999999999999999999887 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+|||||||||||++|++||+|+|+||||||||+|+|++||||||.||+.||.++||++|++||||
T Consensus 316 vD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTn 395 (822)
T COG0653 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTN 395 (822)
T ss_pred EecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|++|.+|.|..+||.|++++|..+|.+||||||||.||+.||.+|++|++.||||+|||| +||++||+||++
T Consensus 396 rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA--k~h~~EA~Iia~ 473 (822)
T COG0653 396 RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQ 473 (822)
T ss_pred CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+|||||+
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~----------------------------------------------------- 500 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPE----------------------------------------------------- 500 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHH-----------------------------------------------------
Confidence 999999999999999999999998642
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
.|.++||
T Consensus 501 -------------------------------------------------------------------------~V~~lGG 507 (822)
T COG0653 501 -------------------------------------------------------------------------FVMELGG 507 (822)
T ss_pred -------------------------------------------------------------------------HHHHhCC
Confidence 4888999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||+|+||+||||+|||+|| +|++..+|.++++.+++||+|+|++++|++||
T Consensus 508 L~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~--~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQ 585 (822)
T COG0653 508 LHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFA--SDRLPALMDKLGLKEGEAIESKMVTRAVERAQ 585 (822)
T ss_pred cEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhc--chhhHHHHHhhcCCccCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
++||++||++||++++||+|||.||++||++|+++|+. .++.+.+..|++++++.++..+.+...
T Consensus 586 k~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~--~dl~~~~~~~~~~~~~~~v~~~~~~~~ 650 (822)
T COG0653 586 RKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEA--LDLSEFISKMIEDVIKALVGEYIPPPQ 650 (822)
T ss_pred HHHHhcCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcccCCchh
Confidence 99999999999999999999999999999999999964 789999999999999999988876654
No 12
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.1e-175 Score=1504.05 Aligned_cols=567 Identities=50% Similarity=0.812 Sum_probs=552.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 79 ~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~ 158 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158 (796)
T ss_pred CCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+...++|.
T Consensus 159 ~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r---~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~ 235 (796)
T PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQR---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI 235 (796)
T ss_pred CCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhcc---CcceeeeccchheeeccCCCceecCCCCCcchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCC-----------CeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCc
Q 005155 161 VAAKVAELLVQGL-----------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 161 ~~~~i~~~l~~~~-----------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~ 228 (711)
.+++++..|.++. ||.+|++.|+++||++|+.++|+++++.++|+..+ .|.+||.+||+|+++|++|+
T Consensus 236 ~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~ 315 (796)
T PRK12906 236 RADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315 (796)
T ss_pred HHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764 99999999999999999999999999999999876 68999999999999999999
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
||||+||+|+|||++|||+|+||+||+||||||||||||+|+||+.|+|+|||||||++|++|+||||||+++++||+++
T Consensus 316 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~i 395 (796)
T PRK12906 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREI 395 (796)
T ss_pred cEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
||++|++||||+|++|+|+||.||.|..+||.+|++++.+.|++||||||||+|++.||.|+..|++.|++|++||| +
T Consensus 396 Y~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna--~ 473 (796)
T PRK12906 396 YNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--K 473 (796)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred chHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcch
Q 005155 389 YAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSS 468 (711)
Q Consensus 389 ~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (711)
++++|++||++||++|+||||||||||||||+||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~---------------------------------------------- 507 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG---------------------------------------------- 507 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC----------------------------------------------
Confidence 7899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhcccccc
Q 005155 469 SLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCS 548 (711)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (711)
T Consensus 508 -------------------------------------------------------------------------------- 507 (796)
T PRK12906 508 -------------------------------------------------------------------------------- 507 (796)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCC-CCCCccc
Q 005155 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITN-DEDMPIE 627 (711)
Q Consensus 549 ~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~-~~~~~i~ 627 (711)
++|.++||||||+|+||||+|||+||+||||||||||+|+||+|||||||+.|| ++++.++|.++++ ++++||+
T Consensus 508 ---~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~~i~ 582 (796)
T PRK12906 508 ---PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFG--SDRVKAFLDRLGMNDDDQVIE 582 (796)
T ss_pred ---cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhC--cHHHHHHHHHcCCCCCCCccc
Confidence 357889999999999999999999999999999999999999999999999999 9999999999999 8899999
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 628 ~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
+++++++|++||+++|++||++||++++||+|||.||++||++|++||+++ +++.+.|.+|++++|+++++.|.++
T Consensus 583 ~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~-~~l~~~i~~~~~~~i~~~i~~~~~~ 658 (796)
T PRK12906 583 SRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINED-KDLKEVLMPMIKRTVDRQVQMYTQG 658 (796)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999653 5899999999999999999988753
No 13
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-169 Score=1462.35 Aligned_cols=566 Identities=43% Similarity=0.662 Sum_probs=538.7
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+||+||+++++++++|.||||+||||||++|+||+++++|.|++|||||||+|||.||++||+++|+++|++|++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG 172 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSG 172 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHh-hhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccch
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y 159 (711)
++.++++.+|.||||||||++||||||+|+ |..+..+.||| +++|+||||||||||||||||||||||.+.++..|
T Consensus 173 ~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr---~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y 249 (970)
T PRK12899 173 SPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVY 249 (970)
T ss_pred CCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc---cccEEEEechhhhhhhccCCceeeeCCCccccHHH
Confidence 999999999999999999999999999999 77777788998 99999999999999999999999999999998888
Q ss_pred HHHHHHHHHc-------------------------------------------------------------cc-------
Q 005155 160 PVAAKVAELL-------------------------------------------------------------VQ------- 171 (711)
Q Consensus 160 ~~~~~i~~~l-------------------------------------------------------------~~------- 171 (711)
..++.++..| .+
T Consensus 250 ~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 329 (970)
T PRK12899 250 FELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAM 329 (970)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhh
Confidence 8877555443 11
Q ss_pred ----------------------CCCeEEeCCCCeeeecHhhHHHH--------HHhc---------CCC--CCCCC----
Q 005155 172 ----------------------GLHYTVELKNNSVELTEEGIALA--------EMAL---------ETN--DLWDE---- 206 (711)
Q Consensus 172 ----------------------~~~y~~d~~~k~v~Lt~~G~~~~--------e~~~---------~~~--~L~~~---- 206 (711)
+.||.+|++.++++||++|+.++ |.++ +++ +++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~ 409 (970)
T PRK12899 330 IDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKI 409 (970)
T ss_pred hhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhh
Confidence 23899999999999999999985 6676 553 43432
Q ss_pred ------------CCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce
Q 005155 207 ------------NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV 274 (711)
Q Consensus 207 ------------~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~ 274 (711)
...+.|+|.+||+|+++|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++
T Consensus 410 ~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~ 489 (970)
T PRK12899 410 NRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQ 489 (970)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCce
Confidence 22588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCC
Q 005155 275 VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354 (711)
Q Consensus 275 t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~gr 354 (711)
|+|+|||||||++|++|+||||||+++++||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||
T Consensus 490 t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr 569 (970)
T PRK12899 490 TFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN 569 (970)
T ss_pred eeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHH
Q 005155 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIE 434 (711)
Q Consensus 355 PVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~ 434 (711)
||||||.|++.||.||.+|.+.||+|+|||| +++++||+||++||++|+||||||||||||||+||
T Consensus 570 PvLigt~si~~se~ls~~L~~~gi~h~vLNa--k~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~------------ 635 (970)
T PRK12899 570 PILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD------------ 635 (970)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCcceeccc--chhhhHHHHHHhcCCCCcEEEeeccccCCcccccC------------
Confidence 9999999999999999999999999999999 58999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHH
Q 005155 435 DRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKE 514 (711)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (711)
T Consensus 636 -------------------------------------------------------------------------------- 635 (970)
T PRK12899 636 -------------------------------------------------------------------------------- 635 (970)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEE
Q 005155 515 LQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 594 (711)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~l 594 (711)
++|+++|||||||||||||+|||||||||||||||||||+|||
T Consensus 636 -------------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 636 -------------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 4689999999999999999999999999999999999999999
Q ss_pred ecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 005155 595 SLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSI 674 (711)
Q Consensus 595 SleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~i 674 (711)
|||||||+.|| ++++.++|.++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++|
T Consensus 679 SlEDdL~~~f~--~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~i 756 (970)
T PRK12899 679 SFEDRLMRLFA--SPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDV 756 (970)
T ss_pred EcchHHHHHhC--cHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 675 LTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 675 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
|++ +++.+.|.+|++++++++++.|+++
T Consensus 757 L~~--~~~~~~i~~~~~~~i~~~v~~~~~~ 784 (970)
T PRK12899 757 LHA--EDIFVVAKEIIEHVALMLASLILKD 784 (970)
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 954 5899999999999999999988754
No 14
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-167 Score=1432.50 Aligned_cols=566 Identities=58% Similarity=0.907 Sum_probs=552.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 55 ~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~ 134 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG 134 (745)
T ss_pred CCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.|||+||||++||||||||+|+...+..++| +++|||||||||||+|+||+||||||+.+.+..+|.
T Consensus 135 ~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r---~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc---ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 99999999999999999999999999999998888888888 999999999999999999999999999888888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+..|++.|.++.||++|++.|+++||++|+.++|++++++++|+..+ .|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988999999999999999999999999999999999855 7999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++||||
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 371 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTN 371 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||+||+++|.++|++||||||||+|++.||.+++.|++.|++|++|||+ |+++|++|+++
T Consensus 372 kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 372 RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+++
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~--------------------------------------------------------- 472 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLE--------------------------------------------------------- 472 (745)
T ss_pred cCCCceEEEEeccccCCcCCCcc---------------------------------------------------------
Confidence 99999999999999999999873
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
+|.++||
T Consensus 473 -------------------------------------------------------------------------~V~~~GG 479 (745)
T TIGR00963 473 -------------------------------------------------------------------------EVKELGG 479 (745)
T ss_pred -------------------------------------------------------------------------chhhcCC
Confidence 5788999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
||||+|+||||+|+|+||+||||||||||+|+||+|+||+||++|| ++++.++|.++++++++||+++++++++++||
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG--GDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh--hHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|+++|+ ++++.+.+.+|++++|+++++.+.++.
T Consensus 558 ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ 621 (745)
T TIGR00963 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILE--SEDLSELILQMLESTLDEIVDAYINEQ 621 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999995 458999999999999999999887654
No 15
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.4e-162 Score=1392.19 Aligned_cols=564 Identities=43% Similarity=0.684 Sum_probs=547.1
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|++++|+|.|+||+|||||||+|+||+++++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -----CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC
Q 005155 81 -----MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (711)
Q Consensus 81 -----~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~ 155 (711)
+++++|+.+|+|||+||||++|+||||||+|+.++...++| +++|+|||||||||||||+|||||||++..+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r---~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc---cCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 77889999999999999999999999999999887788888 9999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeC
Q 005155 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 156 ~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
+.+|..++.+++.|.++.||++|++.|+++||++|+.++|++|++++||++.+ .+.+||.+||+|+++|++|+||||+|
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 88999999999999998999999999999999999999999999999998776 68999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
|+|+|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
+||||+|++|+|+||.||.+..+||.|+++++.++|.+||||||||+|++.|+.++..|.+.|++|++|||+ ++++|+
T Consensus 386 ~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~--~~~~E~ 463 (762)
T TIGR03714 386 KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ--NAAKEA 463 (762)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC--ChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 678999
Q ss_pred HHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 005155 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (711)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (711)
+++++||++|+||||||||||||||+||
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~---------------------------------------------------- 491 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG---------------------------------------------------- 491 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC----------------------------------------------------
Confidence 9999999999999999999999999998
Q ss_pred HHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhh
Q 005155 475 KAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEV 554 (711)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 554 (711)
++|
T Consensus 492 -----------------------------------------------------------------------------~~v 494 (762)
T TIGR03714 492 -----------------------------------------------------------------------------KGV 494 (762)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 368
Q ss_pred hhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCC----CcccchH
Q 005155 555 KRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED----MPIEGDA 630 (711)
Q Consensus 555 ~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~----~~i~~~~ 630 (711)
+++||||||+|++|+|+|+|+|++||||||||||+|+||+|+||+||++|| ++++.++|.+++++++ +||++++
T Consensus 495 ~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (762)
T TIGR03714 495 AELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSWLKKYYKKYSVKDSKLKPSALFKRR 572 (762)
T ss_pred cccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcc--hHHHHHHHHHcCCCcccccCcccccHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999998765 8999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHHHHHhhcC
Q 005155 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANES-CSQQIFQYMQAVVDEIIFGNV 702 (711)
Q Consensus 631 ~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 702 (711)
++++|++||+++|++||++||++++||+|||.||++||++|++||++ ++ +.+.+.+|++++++++++.|.
T Consensus 573 ~~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~ 643 (762)
T TIGR03714 573 FRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG--SDFLDDDVDQIIDDVFNMYAEEQD 643 (762)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999954 46 899999999999999998763
No 16
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-159 Score=1381.02 Aligned_cols=569 Identities=45% Similarity=0.739 Sum_probs=552.8
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+|||||||+|+||++++||.|++|||||||+|||+||++||+++|++|||+|+++.++
T Consensus 77 ~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~ 156 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSD 156 (790)
T ss_pred CCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccch
Q 005155 81 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (711)
Q Consensus 81 ~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y 159 (711)
++ +++|+.+|.|||+||||++||||||||+|..++...++| +++|||||||||||||+|+|||||||+.+.++.+|
T Consensus 157 ~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r---~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y 233 (790)
T PRK09200 157 IDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLY 233 (790)
T ss_pred CCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccc---ccceEEEeccccceeccCCCceeeeCCCccccHHH
Confidence 99 999999999999999999999999999999887778888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 160 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 160 ~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
..+++++..|.++.||.+|++.++++||++|+.++|.++++.++|+..+ .|.+||.+||+|+++|++|+||||+||+|+
T Consensus 234 ~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ 313 (790)
T PRK09200 234 HIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313 (790)
T ss_pred HHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEE
Confidence 9999999999988899999999999999999999999999999999766 688999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
|||++|||+|+||+||+||||||||||||+|++|+.|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 314 ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt 393 (790)
T PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393 (790)
T ss_pred EEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH
Q 005155 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
|+|++|+|+||.||.+..+||.++++++.+.|.+||||||||+|++.|+.|+..|.+.|++|.+|||+ ++++|+.+++
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~--~~~~e~~~i~ 471 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIA 471 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCC--ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 6789999999
Q ss_pred hcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 005155 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (711)
+||++|+||||||||||||||+||
T Consensus 472 ~ag~~g~VlIATdmAgRG~DI~l~-------------------------------------------------------- 495 (790)
T PRK09200 472 EAGQKGAVTVATNMAGRGTDIKLG-------------------------------------------------------- 495 (790)
T ss_pred HcCCCCeEEEEccchhcCcCCCcc--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred HHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcC
Q 005155 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (711)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (711)
++|.++|
T Consensus 496 -------------------------------------------------------------------------~~V~~~G 502 (790)
T PRK09200 496 -------------------------------------------------------------------------EGVHELG 502 (790)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4688899
Q ss_pred CeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCC---CCcccchHHHHHH
Q 005155 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDE---DMPIEGDAIVRQL 635 (711)
Q Consensus 559 GL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i 635 (711)
|||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||+.|| ++++.+++.++++++ ++||+++++++++
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEELEKLKKKLKTDAQRLTGLLFNRKVHKIV 580 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhc--cHHHHHHHHHcCCccccCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999888 8999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 636 LGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 636 ~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
++||+++|++||++||++++||+|||.||++||++|++||+++..++.+.+..|++++++++++.++++.
T Consensus 581 ~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (790)
T PRK09200 581 VKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEK 650 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999765558999999999999999999887543
No 17
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.5e-150 Score=1279.00 Aligned_cols=524 Identities=47% Similarity=0.699 Sum_probs=506.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||++++++.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 102 ~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg 181 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED 181 (656)
T ss_pred CCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhc-------------------chhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAA-------------------NSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~-------------------~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+++++|+.+|+||||||||++||||||||||+. +.++.++| +++||||||||||||||
T Consensus 182 ~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 182 QSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc---ccceeEeecccceeecc
Confidence 999999999999999999999999999999987 55678888 99999999999999999
Q ss_pred CCCceeccCCCCCC--ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCC-CCCCCCCCchHHHHHHHH
Q 005155 142 GRNPLLISGEASKD--VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDENDPWARFVMNAL 218 (711)
Q Consensus 142 a~tPLiiSg~~~~~--~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~~~~~~i~~AL 218 (711)
|+||||||||.... .++|..++.+++.|.++.||++|+++++++||+.|+.++|+++++ .++|+....+.+||++||
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 99999999998766 579999999999999989999999999999999999999999987 789988878999999999
Q ss_pred HHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCc
Q 005155 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298 (711)
Q Consensus 219 ~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa 298 (711)
+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|++|+.|+|+|||||||++|++|+|||||+
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCC
Q 005155 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 299 ~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi 378 (711)
+++++||.++|+++|+.||||+|++|+++++.+|.+..+||.+|++++.+.++.|+||||||+|++.|+.+++.|.+.|+
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi 498 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGL 498 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcc
Q 005155 379 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPK 458 (711)
Q Consensus 379 ~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (711)
+|.+||++ ++++|+.++++||++|.||||||||||||||+++
T Consensus 499 ~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~------------------------------------ 540 (656)
T PRK12898 499 PHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------ 540 (656)
T ss_pred CEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc------------------------------------
Confidence 99999995 7899999999999999999999999999999987
Q ss_pred hhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhh
Q 005155 459 VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLS 538 (711)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (711)
T Consensus 541 -------------------------------------------------------------------------------- 540 (656)
T PRK12898 541 -------------------------------------------------------------------------------- 540 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhc
Q 005155 539 VLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRI 618 (711)
Q Consensus 539 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~ 618 (711)
++|.++||||||+|++|+|+|+|+|++|||||||+||+++||+|+||+||+.|+ ++++.+++..+
T Consensus 541 -------------~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~ 605 (656)
T PRK12898 541 -------------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL--GSRGLAIRRME 605 (656)
T ss_pred -------------cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh--hHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999 99999999988
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 005155 619 TNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEV 662 (711)
Q Consensus 619 ~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~ 662 (711)
++.+ .+.++++++++++||+++|++||++||++++||++++.
T Consensus 606 ~~~~--~~~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 606 LLGP--RGGRALGALLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred cCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 36699999999999999999999999999999999874
No 18
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=100.00 E-value=1.3e-65 Score=534.84 Aligned_cols=191 Identities=65% Similarity=1.009 Sum_probs=174.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+|+||+|||||||+++||++++||.|++|||||+|+|||+||++||+|||++|||+|++++++
T Consensus 76 ~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp ----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred CcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+++|.||||||||++|+||||||++..++...++| +++|||||||||||||+|++||+|||
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r---~~~~~ivDEvDs~LiDea~~pl~is~---------- 222 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQR---GFDFAIVDEVDSILIDEARTPLIISG---------- 222 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS---SSSEEEECTHHHHTTTGCCSEEEEEE----------
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccC---CCCEEEEeccceEEEecCcccccccc----------
Confidence 99999999999999999999999999999999988888888 99999999999999999999999998
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
+|||++|+|++.|+++||||+||++|++|+|||||++++++||+
T Consensus 223 ----------------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 ----------------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp ----------------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred ----------------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 89999999999999999999999999999999999999999996
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-33 Score=310.23 Aligned_cols=281 Identities=21% Similarity=0.290 Sum_probs=216.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+|+|..+.+.++.|+ |+..+||+||||+|+||+..+... |..|.|++|+++||.|..+.+..|...+
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~ 192 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL 192 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC
Confidence 59999999999999999 999999999999999999976665 4579999999999999999999999999
Q ss_pred CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
++++.|++|+.+ +|.+....++||+++||+++ .|.|..+ ...++ .+.|+|+||||.|| |+++-|
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl-----~d~le~g--~~~l~---~v~ylVLDEADrMl-dmGFe~--- 258 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRL-----IDLLEEG--SLNLS---RVTYLVLDEADRML-DMGFEP--- 258 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHH-----HHHHHcC--Ccccc---ceeEEEeccHHhhh-ccccHH---
Confidence 999999999976 88888999999999999997 6666554 34566 89999999999997 887665
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
++.+|+..+++. .+|+. +|+++ |+.||.+. |..++.
T Consensus 259 ------------qI~~Il~~i~~~--------~rQtl-----------------m~saT--wp~~v~~l--A~~fl~--- 294 (519)
T KOG0331|consen 259 ------------QIRKILSQIPRP--------DRQTL-----------------MFSAT--WPKEVRQL--AEDFLN--- 294 (519)
T ss_pred ------------HHHHHHHhcCCC--------cccEE-----------------EEeee--ccHHHHHH--HHHHhc---
Confidence 899999999542 34555 67777 78888854 566664
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+|+-.+ + |... +.| ...+|+.
T Consensus 295 ~~~~i~----i-----g~~~-------------~~~----------a~~~i~q--------------------------- 315 (519)
T KOG0331|consen 295 NPIQIN----V-----GNKK-------------ELK----------ANHNIRQ--------------------------- 315 (519)
T ss_pred CceEEE----e-----cchh-------------hhh----------hhcchhh---------------------------
Confidence 444321 1 1100 000 0000100
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.....+..+|...+...+...+ ..+-+|||||+++..++.|+..|...++++..||++.
T Consensus 316 --------------------ive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~ 375 (519)
T KOG0331|consen 316 --------------------IVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDK 375 (519)
T ss_pred --------------------hhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccc
Confidence 0011234455555555554443 4556899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.|.+|+..+-. +.| +-.|.||||+|+||.||+
T Consensus 376 sQ~eR~~~L~~FreG-~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 376 SQSERDWVLKGFREG-KSPVLVATDVAARGLDVP 408 (519)
T ss_pred cHHHHHHHHHhcccC-CcceEEEcccccccCCCc
Confidence 77777765554 455 558999999999999995
No 20
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=99.97 E-value=1.5e-31 Score=246.45 Aligned_cols=109 Identities=43% Similarity=0.722 Sum_probs=103.5
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCC-CCCCCCCC-chHHHHHHHHHHHHHhccCcceE
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDEND-PWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
.++++|..++++++.|.++.||++|+++|+++||+.|+.++|+++++ +++|+..+ +|.++|.+||+|+++|++|+|||
T Consensus 3 ~~~~~y~~a~~~~~~L~~~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~i~~AL~A~~l~~rd~dYi 82 (113)
T PF01043_consen 3 DSSNLYREADKFAKQLKEDEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHHINQALKAHHLFKRDVDYI 82 (113)
T ss_dssp SCHHHHHHHHHHHHHSHTTTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHHHHHHHHHHHCSTTTTSEE
T ss_pred hhHHHHHHHHHHHHhCCCCCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHHhCCcceE
Confidence 45678999999999999999999999999999999999999999999 99999988 89999999999999999999999
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHH
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVE 262 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiE 262 (711)
|+||+|+|||+||||+||||+||+|||||||
T Consensus 83 V~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 83 VRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp EETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred EEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 9999999999999999999999999999997
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=286.63 Aligned_cols=276 Identities=19% Similarity=0.241 Sum_probs=208.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CC---C-EEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GE---G-VHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--G~---~-VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
.|+|||..+++.+++|+ |++.+||+|||++|++|++ +.|. .. . +.|++||++||.|.++.+..+...+ ++
T Consensus 51 ~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l-~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL-QKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 69999999999999999 9999999999999999997 4465 32 2 8999999999999999999999999 89
Q ss_pred eEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 73 SVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 73 tv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
++.+++|+++...+ +..-++||++|||+++ .|++. .. ...+. ++.++|+||||.|| |++
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRl-lD~i~----~~--~l~l~---~v~~lVlDEADrmL-d~G-------- 190 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRL-LDLIK----RG--KLDLS---GVETLVLDEADRML-DMG-------- 190 (513)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCEEEECccHH-HHHHH----cC--Ccchh---hcCEEEeccHhhhh-cCC--------
Confidence 99999999874433 3334699999999998 45543 33 34455 89999999999997 665
Q ss_pred CCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcce
Q 005155 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dY 230 (711)
+.+.+..++..+++ ++++. +||++.+- .|.. + |+.++. |.-.
T Consensus 191 -------f~~~i~~I~~~~p~---------~~qtl-----------------lfSAT~~~--~i~~-l-~~~~l~-~p~~ 232 (513)
T COG0513 191 -------FIDDIEKILKALPP---------DRQTL-----------------LFSATMPD--DIRE-L-ARRYLN-DPVE 232 (513)
T ss_pred -------CHHHHHHHHHhCCc---------ccEEE-----------------EEecCCCH--HHHH-H-HHHHcc-CCcE
Confidence 44588888888864 57777 79988643 3443 2 344443 2211
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce--eeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~--t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+.+.++.. +...|...
T Consensus 233 ------------------------------------i~v~~~~~~~~~~~i~q~-------------------------- 250 (513)
T COG0513 233 ------------------------------------IEVSVEKLERTLKKIKQF-------------------------- 250 (513)
T ss_pred ------------------------------------EEEccccccccccCceEE--------------------------
Confidence 11111111 33333321
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~-~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.++.... +|+..+...+... ....+||||+++..++.|+..|...|+++..||+++
T Consensus 251 ---------------------~~~v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 251 ---------------------YLEVESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred ---------------------EEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 2233333 4777766665432 222599999999999999999999999999999998
Q ss_pred cchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+|+..+-...-..-.|+|||+.|+||+||.
T Consensus 308 ~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 308 PQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 888888877763333679999999999999996
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=2.7e-29 Score=274.56 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=223.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHH------------HHHcCCCEEEEecCHHHHHHHHHHHHHH
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL------------NALTGEGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l------------~AL~G~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
|-|.|+|-++++++++.+ |.-+.||+|||++|.+|+.. +-..|....|+.|+++||++..++-..|
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 569999999999988766 88888999999999998863 2225888999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 67 HRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 67 y~~LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
...||+.|..++++.+-+++ +..-+|+|+++||++| .|.|-.+ .+|+. .+.|+++||||.| ||+++.
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL-id~Lenr------~lvl~---qctyvvldeadrm-iDmgfE 414 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL-IDSLENR------YLVLN---QCTYVVLDEADRM-IDMGFE 414 (673)
T ss_pred cccccceEEEEecccchhhhhhhhhccceeeecCchHH-HHHHHHH------HHHhc---cCceEeccchhhh-hccccc
Confidence 99999999999999998888 8889999999999998 5555433 46777 8999999999999 599988
Q ss_pred ceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHh
Q 005155 145 PLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFY 224 (711)
Q Consensus 145 PLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~ 224 (711)
| ++.+++.+++.... +.| .-+.+|..++ ...|
T Consensus 415 ~---------------dv~~iL~~mPssn~-k~~------tde~~~~~~~--------------------------~~~~ 446 (673)
T KOG0333|consen 415 P---------------DVQKILEQMPSSNA-KPD------TDEKEGEERV--------------------------RKNF 446 (673)
T ss_pred H---------------HHHHHHHhCCcccc-CCC------ccchhhHHHH--------------------------Hhhc
Confidence 7 67777777753100 000 0001111111 1111
Q ss_pred ccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHH
Q 005155 225 RRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE 304 (711)
Q Consensus 225 ~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~E 304 (711)
...+ .|..-...|.|.....+-
T Consensus 447 ~~~k----------------------------------------------------------~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 447 SSSK----------------------------------------------------------KYRQTVMFTATMPPAVER 468 (673)
T ss_pred cccc----------------------------------------------------------ceeEEEEEecCCChHHHH
Confidence 1111 122233446666655555
Q ss_pred HHHHc-CCCe-EEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 305 FLKMF-QMPV-IEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 305 f~~iY-~l~v-v~IPt-~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.+.| .-+| +.|-+ ++|.-|.. ..+++.++++||.++++-+.+. ..-|++||.++++.++.|++.|.+.|+.+.
T Consensus 469 lar~ylr~pv~vtig~~gk~~~rve-Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~ 545 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAGKPTPRVE-QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVT 545 (673)
T ss_pred HHHHHhhCCeEEEeccCCCCccchh-eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEE
Confidence 55444 2333 34433 34444432 3466789999999998777653 456899999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.||++.++.+||-.+-. ++| .+.|.||||.||||+||+
T Consensus 546 tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 546 TLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIP 584 (673)
T ss_pred EeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence 99999888888877766 666 789999999999999996
No 23
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=3.8e-28 Score=277.32 Aligned_cols=280 Identities=20% Similarity=0.305 Sum_probs=198.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..+++++++|+ |+.+.||+|||++|+||++.+.+. |..|.|++|+++||.|..+++..|...++
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~ 231 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK 231 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC
Confidence 59999999999999998 999999999999999999865542 45699999999999999999999999999
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+++.+++++.+.. .+...-.+||+++||+.| .|+|.... ..++ .+.++||||||.|| |.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL-~d~l~~~~------~~l~---~v~~lViDEAd~ml-d~g------- 293 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRL-IDFLESNV------TNLR---RVTYLVLDEADRML-DMG------- 293 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH-HHHHHcCC------CChh---hCcEEEeehHHhhh-hcc-------
Confidence 9999999987643 333455789999999998 56664321 2244 78999999999986 543
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
+.+++.++...+.+ ++++. +|+++ |...+... |+.++..+.
T Consensus 294 --------f~~~i~~il~~~~~---------~~q~l-----------------~~SAT--~p~~v~~l--~~~l~~~~~- 334 (545)
T PTZ00110 294 --------FEPQIRKIVSQIRP---------DRQTL-----------------MWSAT--WPKEVQSL--ARDLCKEEP- 334 (545)
T ss_pred --------hHHHHHHHHHhCCC---------CCeEE-----------------EEEeC--CCHHHHHH--HHHHhccCC-
Confidence 33466677766643 34444 46665 33334322 334432111
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
+. +-+.. +. ++ ....|.
T Consensus 335 -v~-----i~vg~----~~--------------------l~----~~~~i~----------------------------- 351 (545)
T PTZ00110 335 -VH-----VNVGS----LD--------------------LT----ACHNIK----------------------------- 351 (545)
T ss_pred -EE-----EEECC----Cc--------------------cc----cCCCee-----------------------------
Confidence 10 00000 00 00 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....+....+|...+.+.+......+.++||||++++.++.|+..|...|+++..+|+++.+
T Consensus 352 ------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~ 413 (545)
T PTZ00110 352 ------------------QEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQ 413 (545)
T ss_pred ------------------EEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcH
Confidence 01112334456666666555554578899999999999999999999999999999998777
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||+.|+||+||.
T Consensus 414 ~eR~~il~~F~~G-~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 414 EERTWVLNEFKTG-KSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHHHhcC-CCcEEEEcchhhcCCCcc
Confidence 777755544 444 557999999999999995
No 24
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5e-29 Score=265.31 Aligned_cols=277 Identities=22% Similarity=0.244 Sum_probs=208.4
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+|++||.-++|+.|+|+ |+-.+||+|||++|+||++ ++|.+. .+.|+||+++||.|.++.+.++-...||.|
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl-~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~ 160 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL-QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRV 160 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH-HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEE
Confidence 479999999999999999 8899999999999999996 888665 599999999999999999999999999999
Q ss_pred EEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
.++.||++.. .....-..+|+++|||+| .|++...+ ...++ .+.|+|+||||.+| |+-+.
T Consensus 161 ~~lvGG~~m~~q~~~L~kkPhilVaTPGrL-----~dhl~~Tk-gf~le---~lk~LVlDEADrlL-d~dF~-------- 222 (476)
T KOG0330|consen 161 AVLVGGMDMMLQANQLSKKPHILVATPGRL-----WDHLENTK-GFSLE---QLKFLVLDEADRLL-DMDFE-------- 222 (476)
T ss_pred EEEecCchHHHHHHHhhcCCCEEEeCcHHH-----HHHHHhcc-CccHH---HhHHHhhchHHhhh-hhhhH--------
Confidence 9999998844 344566789999999998 45554322 23345 78999999999998 55333
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+.++.|.+.++. +++.+ ||+++. ...|...++|.- + +. +
T Consensus 223 -------~~ld~ILk~ip~---------erqt~-----------------LfsATM--t~kv~kL~rasl--~-~p---~ 261 (476)
T KOG0330|consen 223 -------EELDYILKVIPR---------ERQTF-----------------LFSATM--TKKVRKLQRASL--D-NP---V 261 (476)
T ss_pred -------HHHHHHHHhcCc---------cceEE-----------------EEEeec--chhhHHHHhhcc--C-CC---e
Confidence 478888888863 56666 688774 334443332211 1 10 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.+. +.-+||.+ . -+.+.
T Consensus 262 -----~v~-------------~s~ky~tv---------------~--------------------------~lkQ~---- 278 (476)
T KOG0330|consen 262 -----KVA-------------VSSKYQTV---------------D--------------------------HLKQT---- 278 (476)
T ss_pred -----EEe-------------ccchhcch---------------H--------------------------Hhhhh----
Confidence 000 00011111 1 11111
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.+|.....|-..++..+++ ..|.|++|||++...++.++-.|...|+.|--||+.+.+..|
T Consensus 279 -----------------ylfv~~k~K~~yLV~ll~e--~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 279 -----------------YLFVPGKDKDTYLVYLLNE--LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred -----------------eEeccccccchhHHHHHHh--hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 1244445555667777765 578999999999999999999999999999999999888888
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
...+-+ +|| .-.|.|||+.|.||.||.
T Consensus 340 lg~l~~Fk~~-~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 340 LGALNKFKAG-ARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHHhcc-CCcEEEecchhcccCCCC
Confidence 877766 777 668999999999999996
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.9e-27 Score=262.84 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=191.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----------cCCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----------~G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+++|..+++.+++|+ |+++.||+|||++|++|++-.-+ .+..+.|++|+.+||.|.++++..+...
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 109 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQA 109 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999998 99999999999999999973332 1346999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+|++++++.++.+.... .....+||++|||+.| .++++.. ..... .+.++||||||.|+ |.+
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~---~v~~lViDEad~l~-~~~----- 173 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLG---AIQVVVLDEADRMF-DLG----- 173 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccccc---cccEEEEecHHHHh-hcc-----
Confidence 99999999988764433 3345689999999998 5666432 12244 79999999999986 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
+...+..+...+... ..++.. +|+++.+ ..+.... ...+ .+
T Consensus 174 ----------f~~~i~~i~~~~~~~-------~~~~~~-----------------l~SAT~~--~~~~~~~--~~~~-~~ 214 (423)
T PRK04837 174 ----------FIKDIRWLFRRMPPA-------NQRLNM-----------------LFSATLS--YRVRELA--FEHM-NN 214 (423)
T ss_pred ----------cHHHHHHHHHhCCCc-------cceeEE-----------------EEeccCC--HHHHHHH--HHHC-CC
Confidence 233455555555321 122222 3555432 1122111 1111 12
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..++. +.
T Consensus 215 p~~i~-------v~------------------------------------------------------------------ 221 (423)
T PRK04837 215 PEYVE-------VE------------------------------------------------------------------ 221 (423)
T ss_pred CEEEE-------Ec------------------------------------------------------------------
Confidence 21111 00
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
|......+. ....++.+..+|...+...+.. .....+||||++...++.+++.|.+.|+++..+|+++
T Consensus 222 ---------~~~~~~~~i-~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 222 ---------PEQKTGHRI-KEELFYPSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred ---------CCCcCCCce-eEEEEeCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 000000000 0012345566777776665543 3467899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+|+..+-+ +.| .-.|.||||+|+||+||.
T Consensus 290 ~~~~R~~~l~~F~~g-~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 290 AQKKRLRILEEFTRG-DLDILVATDVAARGLHIP 322 (423)
T ss_pred ChhHHHHHHHHHHcC-CCcEEEEechhhcCCCcc
Confidence 66667655544 455 568999999999999994
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=5.5e-27 Score=262.11 Aligned_cols=275 Identities=20% Similarity=0.236 Sum_probs=186.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cC---------CCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TG---------EGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G---------~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+++|..+++.+++|+ |+.+.||+|||++|++|++ +.| .+ ..+.|++|+.+||.+..+++..+...
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil-~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL-QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKY 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999988 9999999999999999997 444 21 25999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+++.+..+.++.+...+ +..-.+||+++|++.| .|++..+ ...+. .++++||||||.|+ |.+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL-~~~~~~~------~~~l~---~v~~lViDEah~ll-~~~----- 165 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL-LDLEHQN------AVKLD---QVEILVLDEADRML-DMG----- 165 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHH-HHHHHcC------Ccccc---cceEEEeecHHHHh-ccc-----
Confidence 99999999998774433 3334679999999987 4444322 12244 79999999999986 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
++..+..+...+.. .+++. +|+++. ...+... +..++. +
T Consensus 166 ----------~~~~i~~il~~l~~---------~~q~l-----------------~~SAT~--~~~~~~l--~~~~~~-~ 204 (456)
T PRK10590 166 ----------FIHDIRRVLAKLPA---------KRQNL-----------------LFSATF--SDDIKAL--AEKLLH-N 204 (456)
T ss_pred ----------cHHHHHHHHHhCCc---------cCeEE-----------------EEeCCC--cHHHHHH--HHHHcC-C
Confidence 33445555555532 23333 345442 1222211 122221 1
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..++. +. ..+.....|.
T Consensus 205 ~~~i~-------~~-----------------------------~~~~~~~~i~--------------------------- 221 (456)
T PRK10590 205 PLEIE-------VA-----------------------------RRNTASEQVT--------------------------- 221 (456)
T ss_pred CeEEE-------Ee-----------------------------ccccccccee---------------------------
Confidence 11110 00 0000000000
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
....+.+...|...+ ..+... ....++||||+|...++.+++.|.+.|+++..+|+++
T Consensus 222 --------------------~~~~~~~~~~k~~~l-~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~ 279 (456)
T PRK10590 222 --------------------QHVHFVDKKRKRELL-SQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNK 279 (456)
T ss_pred --------------------EEEEEcCHHHHHHHH-HHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 112234444444433 333322 3457899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+++..+-+ +.| ...|.|||++++||+||.
T Consensus 280 ~~~~R~~~l~~F~~g-~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 280 SQGARTRALADFKSG-DIRVLVATDIAARGLDIE 312 (456)
T ss_pred CHHHHHHHHHHHHcC-CCcEEEEccHHhcCCCcc
Confidence 77777765555 455 568999999999999994
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=5.3e-27 Score=266.43 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=187.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----------cCCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----------~G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++.+.+ .|..+.|++|+++||.|..+++..+.+.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 59999999999999998 99999999999999999975443 3457999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+++++.++.++.+.. .++..-++||+++||+.| .|+|..+ ...++ .+.++||||||.|+ |.+
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL-~~~l~~~------~~~l~---~v~~lViDEad~ml-~~g----- 286 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL-IDLLSKH------DIELD---NVSVLVLDEVDCML-ERG----- 286 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Cccch---heeEEEeecHHHHh-hcc-----
Confidence 999998888875533 233445689999999998 5666543 22344 78999999999996 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
+...+.++...+. ..++. +|+++. ...+... +..++. +
T Consensus 287 ----------f~~~i~~i~~~l~----------~~q~l-----------------~~SATl--~~~v~~l--~~~~~~-~ 324 (518)
T PLN00206 287 ----------FRDQVMQIFQALS----------QPQVL-----------------LFSATV--SPEVEKF--ASSLAK-D 324 (518)
T ss_pred ----------hHHHHHHHHHhCC----------CCcEE-----------------EEEeeC--CHHHHHH--HHHhCC-C
Confidence 2234444444442 12232 344442 2222211 122211 1
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
+++ |+.
T Consensus 325 --~~~-------i~~----------------------------------------------------------------- 330 (518)
T PLN00206 325 --IIL-------ISI----------------------------------------------------------------- 330 (518)
T ss_pred --CEE-------EEe-----------------------------------------------------------------
Confidence 110 000
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEEeCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNAR 386 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~-~gi~~~vLnA~ 386 (711)
-+.+.+.. ......++.....|...+.+.+........|+||||+|...++.+++.|.. .|+++..+|++
T Consensus 331 --------~~~~~~~~-~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~ 401 (518)
T PLN00206 331 --------GNPNRPNK-AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGE 401 (518)
T ss_pred --------CCCCCCCc-ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCC
Confidence 00001100 001122344445566666665554333345899999999999999999975 69999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+|+..+-. ++| .-.|.|||+.|+||+||.
T Consensus 402 ~~~~eR~~il~~Fr~G-~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 402 KSMKERREVMKSFLVG-EVPVIVATGVLGRGVDLL 435 (518)
T ss_pred CCHHHHHHHHHHHHCC-CCCEEEEecHhhccCCcc
Confidence 777777655554 566 457999999999999994
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=6.4e-27 Score=268.63 Aligned_cols=278 Identities=19% Similarity=0.226 Sum_probs=195.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHR 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (711)
.|+|+|..+++.+++|+ |+++.||+|||++|++|++ +.|. +..|.|++|+.+||.+.++.+..|..
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil-~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM-NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHH-HHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 69999999999999998 9999999999999999997 4441 35799999999999999999999999
Q ss_pred hcCCeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 69 FLGLSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 69 ~LGLtv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
.+|++++.++++.+...+... -.+||+++|++.| +++|+.+-. .... .+.++||||||.|+ |.+
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL-~~~l~~~~~-----~~l~---~v~~lViDEAh~ll-d~g---- 175 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL-IDYVKQHKV-----VSLH---ACEICVLDEADRMF-DLG---- 175 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHH-HHHHHhccc-----cchh---heeeeEecCHHHHh-hcc----
Confidence 999999999999876544433 3579999999988 666653211 1233 78899999999996 432
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
++..+..+...+... ..+++. +|+++. ...+.... ...+..
T Consensus 176 -----------f~~~i~~il~~lp~~-------~~~q~l-----------------l~SATl--~~~v~~l~--~~~l~~ 216 (572)
T PRK04537 176 -----------FIKDIRFLLRRMPER-------GTRQTL-----------------LFSATL--SHRVLELA--YEHMNE 216 (572)
T ss_pred -----------hHHHHHHHHHhcccc-------cCceEE-----------------EEeCCc--cHHHHHHH--HHHhcC
Confidence 344566666666431 134444 566663 23333222 222221
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
.. .+ +++. ++.+...+..
T Consensus 217 p~-~i-------~v~~-----------------------------~~~~~~~i~q------------------------- 234 (572)
T PRK04537 217 PE-KL-------VVET-----------------------------ETITAARVRQ------------------------- 234 (572)
T ss_pred Cc-EE-------Eecc-----------------------------ccccccceeE-------------------------
Confidence 11 11 1110 0000000100
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
..++....+|...++..+.. ..+.++||||+|+..++.|++.|.+.|+++.++|++
T Consensus 235 ----------------------~~~~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~ 290 (572)
T PRK04537 235 ----------------------RIYFPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGD 290 (572)
T ss_pred ----------------------EEEecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11123345566665555433 467899999999999999999999999999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+|+..+-. +.| ...|+|||++++||+||.
T Consensus 291 l~~~eR~~il~~Fr~G-~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 291 VPQKKRESLLNRFQKG-QLEILVATDVAARGLHID 324 (572)
T ss_pred CCHHHHHHHHHHHHcC-CCeEEEEehhhhcCCCcc
Confidence 777777755554 444 568999999999999995
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=3.6e-26 Score=255.30 Aligned_cols=274 Identities=19% Similarity=0.205 Sum_probs=193.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+.+.+++|+ |+++.||+|||++|.+|+. +.|. +..+.|++|+++||.|-++++..+...+ ++++
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil-~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL-QKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 48999999999999998 9999999999999999996 5663 2368999999999999999999998866 8999
Q ss_pred EEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
..++++.+...+. ..-.+||++||++.| .|+++.. ..... .+.++|+||||.|+ |.+
T Consensus 105 ~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl-~~~l~~~------~~~l~---~l~~lViDEad~~l-~~g---------- 163 (460)
T PRK11776 105 LTLCGGVPMGPQIDSLEHGAHIIVGTPGRI-LDHLRKG------TLDLD---ALNTLVLDEADRML-DMG---------- 163 (460)
T ss_pred EEEECCCChHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CccHH---HCCEEEEECHHHHh-CcC----------
Confidence 9999998754443 334679999999988 4555431 12234 78999999999997 432
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
++..+..+...+++ .+++. +|+++. ...+... +..++. +.
T Consensus 164 -----~~~~l~~i~~~~~~---------~~q~l-----------------l~SAT~--~~~~~~l--~~~~~~-~~---- 203 (460)
T PRK11776 164 -----FQDAIDAIIRQAPA---------RRQTL-----------------LFSATY--PEGIAAI--SQRFQR-DP---- 203 (460)
T ss_pred -----cHHHHHHHHHhCCc---------ccEEE-----------------EEEecC--cHHHHHH--HHHhcC-CC----
Confidence 34566667666653 34444 455553 2333322 223322 11
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
..+.++... ....|..
T Consensus 204 ---~~i~~~~~~------------------------------~~~~i~~------------------------------- 219 (460)
T PRK11776 204 ---VEVKVESTH------------------------------DLPAIEQ------------------------------- 219 (460)
T ss_pred ---EEEEECcCC------------------------------CCCCeeE-------------------------------
Confidence 011111100 0000100
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
..+.....+|+.++...+.. ..+.++||||++.+.++.+++.|.+.|+++..+|+++.+.+|
T Consensus 220 ----------------~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 220 ----------------RFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred ----------------EEEEeCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 01122334577777666543 356789999999999999999999999999999998877777
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+.. +.| ...|.|||++|+||+||.
T Consensus 282 ~~~l~~F~~g-~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 282 DQVLVRFANR-SCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHcC-CCcEEEEecccccccchh
Confidence 766655 455 568999999999999994
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=3.6e-26 Score=264.79 Aligned_cols=275 Identities=19% Similarity=0.209 Sum_probs=194.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+++.+++|+ |+++.||+|||++|.+|++ ..+ .+..|.|++|+.+||.|-++.+..+...+ |+.+
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll-~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL-HNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHH-HHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999998 9999999999999999996 444 34579999999999999999999998876 8999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
..++++.+.+.+ ...-.++|++||++.| +|+|+.. ...+. .+.++||||||.|| +.+
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl-~d~l~r~------~l~l~---~l~~lVlDEAd~ml-~~g---------- 165 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRL-LDHLKRG------TLDLS---KLSGLVLDEADEML-RMG---------- 165 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEeccHHHHh-hcc----------
Confidence 999998775443 3344689999999998 5655421 12244 78999999999997 332
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+...+..+...+++ .+++. +|+++.+ ..+... ++.++. +...|
T Consensus 166 -----f~~di~~Il~~lp~---------~~q~l-----------------lfSAT~p--~~i~~i--~~~~l~-~~~~i- 208 (629)
T PRK11634 166 -----FIEDVETIMAQIPE---------GHQTA-----------------LFSATMP--EAIRRI--TRRFMK-EPQEV- 208 (629)
T ss_pred -----cHHHHHHHHHhCCC---------CCeEE-----------------EEEccCC--hhHHHH--HHHHcC-CCeEE-
Confidence 33456666666643 34444 5776642 333322 233332 21111
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.+. ....+...|+.
T Consensus 209 -----~i~------------------------------~~~~~~~~i~q------------------------------- 222 (629)
T PRK11634 209 -----RIQ------------------------------SSVTTRPDISQ------------------------------- 222 (629)
T ss_pred -----Ecc------------------------------CccccCCceEE-------------------------------
Confidence 110 00001111111
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
..+......|..++...+.. ....++||||+|...++.|++.|.+.|+.+..||+++.+.++
T Consensus 223 ----------------~~~~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 223 ----------------SYWTVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 (629)
T ss_pred ----------------EEEEechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHH
Confidence 01112234577777666543 345689999999999999999999999999999998877777
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+.. +.| .-.|.|||++|+||+||.
T Consensus 285 ~~il~~Fr~G-~~~ILVATdv~arGIDip 312 (629)
T PRK11634 285 EQTLERLKDG-RLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHhCC-CCCEEEEcchHhcCCCcc
Confidence 766655 445 567999999999999995
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=8.6e-26 Score=250.18 Aligned_cols=273 Identities=21% Similarity=0.234 Sum_probs=184.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..+++.+++|+ |+.+.||.|||++|++|++ +.|. +..|.|++|+.+||.|-++++..+..++|
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l-~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL-QHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 58999999999999988 9999999999999999997 4431 34799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
++++.+.++.+...+...+ .+||+++|++.| ++++... ....+ .+.++||||||.|+ |.++
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~------~~~~~---~v~~lViDEah~~l-~~~~------ 164 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEE------NFDCR---AVETLILDEADRML-DMGF------ 164 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CcCcc---cCCEEEEECHHHHh-CCCc------
Confidence 9999999998765554443 579999999988 5665432 12244 89999999999996 4321
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
...+..+...+.. .+++. +|+++.. ...+... +..++.
T Consensus 165 ---------~~~~~~i~~~~~~---------~~q~~-----------------~~SAT~~-~~~~~~~--~~~~~~---- 202 (434)
T PRK11192 165 ---------AQDIETIAAETRW---------RKQTL-----------------LFSATLE-GDAVQDF--AERLLN---- 202 (434)
T ss_pred ---------HHHHHHHHHhCcc---------ccEEE-----------------EEEeecC-HHHHHHH--HHHHcc----
Confidence 2233333333321 12222 3343321 0111111 111111
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
T Consensus 203 -------------------------------------------------------------------------------- 202 (434)
T PRK11192 203 -------------------------------------------------------------------------------- 202 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCe-EEe-CCCCCcccccCCCeEE-eC-hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 310 QMPV-IEV-PTNLPNIRVDLPIQSF-AT-ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 310 ~l~v-v~I-Pt~~p~~R~d~~d~i~-~t-~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
-.+ +.+ |... .+......++ .. ...|...+...+ +. ....++||||+|.+.++.++..|...|+++..+|+
T Consensus 203 -~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~l~-~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g 277 (434)
T PRK11192 203 -DPVEVEAEPSRR--ERKKIHQWYYRADDLEHKTALLCHLL-KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG 277 (434)
T ss_pred -CCEEEEecCCcc--cccCceEEEEEeCCHHHHHHHHHHHH-hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC
Confidence 110 011 1100 0001111111 22 234544443333 21 35678999999999999999999999999999999
Q ss_pred CCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 278 ~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDip 312 (434)
T PRK11192 278 EMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDID 312 (434)
T ss_pred CCCHHHHHHHHHHHhCC-CCcEEEEccccccCccCC
Confidence 8777777766555 555 568999999999999994
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=4.6e-25 Score=247.63 Aligned_cols=278 Identities=19% Similarity=0.229 Sum_probs=184.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.||++|..++..+++|+ |+.+.||+|||++|.+|++-..+. +..+.|++|+.+||.+.++++..+...
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 188 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 58999999999999998 999999999999999999744333 346999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHH--HHh-ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 70 LGLSVGLIQRGMIPEE--RRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~--r~~-aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
+|+.+..+.++.+... +.. .-.+||+++|++.| .+++. .. ...++ .+.++||||+|.++ +.+
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L-l~~~~----~~--~~~l~---~l~~lViDEah~l~-~~~---- 253 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL-LDFNQ----RG--EVHLD---MVEVMVLDEADRML-DMG---- 253 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH-HHHHH----cC--Ccccc---cCceEEechHHHHH-hcc----
Confidence 9999999998866332 222 23579999999887 33332 11 23455 89999999999986 432
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
+.+.+..+...+... ..+++. +++++. ...+.+. +..++.
T Consensus 254 -----------~~~~l~~i~~~~~~~-------~~~q~i-----------------~~SAT~--~~~~~~~--~~~~~~- 293 (475)
T PRK01297 254 -----------FIPQVRQIIRQTPRK-------EERQTL-----------------LFSATF--TDDVMNL--AKQWTT- 293 (475)
T ss_pred -----------cHHHHHHHHHhCCCC-------CCceEE-----------------EEEeec--CHHHHHH--HHHhcc-
Confidence 233555555555321 122333 344442 1112221 122211
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
+. + ++-+. +++.....+.
T Consensus 294 ~~--~-----~v~~~-----------------------------~~~~~~~~~~-------------------------- 311 (475)
T PRK01297 294 DP--A-----IVEIE-----------------------------PENVASDTVE-------------------------- 311 (475)
T ss_pred CC--E-----EEEec-----------------------------cCcCCCCccc--------------------------
Confidence 11 0 00000 0000000000
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.........+|+..+...+.. .....+||||+|.+.++.+++.|.+.|+++..+++.
T Consensus 312 ---------------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~ 368 (475)
T PRK01297 312 ---------------------QHVYAVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGD 368 (475)
T ss_pred ---------------------EEEEEecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 001122334566555554433 345689999999999999999999999999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+.+|+..+-. +.| .-.|.||||+++||+||.
T Consensus 369 ~~~~~R~~~~~~Fr~G-~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 369 VPQHKRIKTLEGFREG-KIRVLVATDVAGRGIHID 402 (475)
T ss_pred CCHHHHHHHHHHHhCC-CCcEEEEccccccCCccc
Confidence 666666544433 456 568999999999999993
No 33
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=236.21 Aligned_cols=280 Identities=21% Similarity=0.260 Sum_probs=208.3
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
++||-..++-++.|+ ++.++||+|||++|++|++-.-+ .|-+|.||+|+++||-|.+.+...+..+. +++
T Consensus 106 T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~ 185 (543)
T KOG0342|consen 106 TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESIT 185 (543)
T ss_pred hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcc
Confidence 579999999999999 99999999999999999983333 35589999999999999999999999999 999
Q ss_pred EEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 74 VGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 74 v~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
|+.+.||.. .++.+..-.|.|+++|||+| .|++...+ ....| .+.++|+||||.+| |.++
T Consensus 186 v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~-~f~~r---~~k~lvlDEADrlL-d~GF-------- 247 (543)
T KOG0342|consen 186 VGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTS-GFLFR---NLKCLVLDEADRLL-DIGF-------- 247 (543)
T ss_pred eEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCC-cchhh---ccceeEeecchhhh-hccc--------
Confidence 999999855 55566666999999999998 67766543 34556 88999999999997 7753
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
-..+.+++..++ ++++.+ |||++. ...|.+. |+-.+++|.-||
T Consensus 248 -------~~di~~Ii~~lp---------k~rqt~-----------------LFSAT~--~~kV~~l--~~~~L~~d~~~v 290 (543)
T KOG0342|consen 248 -------EEDVEQIIKILP---------KQRQTL-----------------LFSATQ--PSKVKDL--ARGALKRDPVFV 290 (543)
T ss_pred -------HHHHHHHHHhcc---------ccceee-----------------EeeCCC--cHHHHHH--HHHhhcCCceEe
Confidence 246888888886 367776 799875 3445543 344456655443
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
=. +|...+... |+++ |
T Consensus 291 ~~------~d~~~~~Th----------------e~l~-------------Q----------------------------- 306 (543)
T KOG0342|consen 291 NV------DDGGERETH----------------ERLE-------------Q----------------------------- 306 (543)
T ss_pred ec------CCCCCcchh----------------hccc-------------c-----------------------------
Confidence 21 222111111 1110 0
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchH
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~ 391 (711)
-.+..+...++..+...+++.. +.-.|+|||+|+......+.+|....+|+--+|++++|..
T Consensus 307 -----------------gyvv~~~~~~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 307 -----------------GYVVAPSDSRFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred -----------------eEEeccccchHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccc
Confidence 1223344455667777776643 3378999999999999999999999999999999977766
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|-...-..--...-|.++||.|.||.||.
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCC
Confidence 65443332223456999999999999994
No 34
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.7e-25 Score=232.29 Aligned_cols=281 Identities=21% Similarity=0.205 Sum_probs=196.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|||.-|++.++.|+ |..++||+|||.+|+||.+ +-|. |.-..|+||+++||-|.+|+|.-+-+.++++|+
T Consensus 29 ~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil-~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340|consen 29 KPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL-NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH-HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEE
Confidence 59999999999999999 9999999999999999996 8886 556889999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+|+++++ .+.....-..||+.+|++++ -|.|+.|.... ..+.. .+.|+++||||.|| +. .
T Consensus 108 vivGG~d~i~qa~~L~~rPHvVvatPGRl-ad~l~sn~~~~--~~~~~---rlkflVlDEADrvL-~~-~---------- 169 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVVVATPGRL-ADHLSSNLGVC--SWIFQ---RLKFLVLDEADRVL-AG-C---------- 169 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeEecCcccc-ccccccCCccc--hhhhh---ceeeEEecchhhhh-cc-c----------
Confidence 9999976 45566667789999999998 34444332211 12344 79999999999998 21 1
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc--ceE
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV--QYI 231 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~--dYi 231 (711)
+-..+..+.+.+ |+.|+.+ ||+++. ...++.+..+.-.. -|.
T Consensus 170 ----f~d~L~~i~e~l---------P~~RQtL-----------------lfSATi------td~i~ql~~~~i~k~~a~~ 213 (442)
T KOG0340|consen 170 ----FPDILEGIEECL---------PKPRQTL-----------------LFSATI------TDTIKQLFGCPITKSIAFE 213 (442)
T ss_pred ----hhhHHhhhhccC---------CCccceE-----------------EEEeeh------hhHHHHhhcCCcccccceE
Confidence 111233333333 3345655 566542 12222222111010 011
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
+ |+..|+++ +++ |.
T Consensus 214 ~-----------------------------e~~~~vst-vet-------------------------------L~----- 227 (442)
T KOG0340|consen 214 L-----------------------------EVIDGVST-VET-------------------------------LY----- 227 (442)
T ss_pred E-----------------------------eccCCCCc-hhh-------------------------------hh-----
Confidence 1 11111110 000 00
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
.-.|+...+.|-.-++.-+....+ ....|+||+++...++.|+..|+..++...-||+-+.|.
T Consensus 228 ----------------q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~ 291 (442)
T KOG0340|consen 228 ----------------QGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQK 291 (442)
T ss_pred ----------------hheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHH
Confidence 112355555565555555544333 467899999999999999999999999999999977777
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+|-+.+-+ +++ .-.|.|||+.|.||.||.
T Consensus 292 eR~~aLsrFrs~-~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 292 ERLAALSRFRSN-AARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHHHHHhhc-CccEEEEechhhcCCCCC
Confidence 77777766 454 668999999999999995
No 35
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=236.31 Aligned_cols=277 Identities=19% Similarity=0.214 Sum_probs=205.0
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCC--CEEEEecCHHHHHHHHHHHHHHhhh-c
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGE--GVHVVTVNDYLAQRDAEWMERVHRF-L 70 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~--~VhVvT~NdyLA~RDae~~~~~y~~-L 70 (711)
-+|||..+++.|+.++ ++|..||+||||+|++|++ ..+ .+. +..||+|+++||.|..+-..+|.+. .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~l-e~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPML-EIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHH-HHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 4799999999999988 9999999999999999996 555 122 6789999999999999999999886 7
Q ss_pred CCeEEEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 71 GLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
.+++-+++||++.++--.. -.+.|++||||+| +|.+...+ +....| .+.++|+||||..| |.++
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~~----~~l~~r---sLe~LVLDEADrLl-dmgF---- 174 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQREA----EKLSFR---SLEILVLDEADRLL-DMGF---- 174 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhchh----hhcccc---ccceEEecchHhHh-cccH----
Confidence 9999999999886654433 4678999999998 66665433 234456 99999999999986 7753
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
-..++.|..+|++ +|..= |||++. ...+.+.. +..+. |
T Consensus 175 -----------e~~~n~ILs~LPK---------QRRTG-----------------LFSATq--~~~v~dL~--raGLR-N 212 (567)
T KOG0345|consen 175 -----------EASVNTILSFLPK---------QRRTG-----------------LFSATQ--TQEVEDLA--RAGLR-N 212 (567)
T ss_pred -----------HHHHHHHHHhccc---------ccccc-----------------cccchh--hHHHHHHH--Hhhcc-C
Confidence 3478899999974 44433 899874 23344322 22221 2
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce--eeeeeeehhHhhhcCccccccCCcccHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~--t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef 305 (711)
. +. |.+..++. |.++...
T Consensus 213 p--------------------------------v~----V~V~~k~~~~tPS~L~~------------------------ 232 (567)
T KOG0345|consen 213 P--------------------------------VR----VSVKEKSKSATPSSLAL------------------------ 232 (567)
T ss_pred c--------------------------------ee----eeecccccccCchhhcc------------------------
Confidence 1 11 11122221 2221111
Q ss_pred HHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEE
Q 005155 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVL 383 (711)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vL 383 (711)
..+.....+|...+++.+.. ..-..++||++|...+++.+..|... +++.--+
T Consensus 233 -----------------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 233 -----------------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred -----------------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 11234567899988888765 45678999999999999999888764 5677789
Q ss_pred eCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 384 NARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 384 nA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|++++|.+|-..+-+.--.+..|.++|+.|.||+||.
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9998888887777665556889999999999999995
No 36
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.93 E-value=8.7e-25 Score=240.37 Aligned_cols=279 Identities=21% Similarity=0.275 Sum_probs=209.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|++||--+++.-++|+ |+-.+||+||||+|++|++ .+| .|-|+.||+|+++||-|.++-+..+.++-+
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvl-E~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVL-EALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHH-HHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 46789999999999999 9999999999999999996 666 477999999999999999999999999999
Q ss_pred CeEEEEcCCCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 72 LSVGLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 72 Ltv~~i~~~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
+|+|+|.||.+ ..++...-+++|.+||||+| ..||..++ ..... ++.++|+||||+|| |+++.
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~~-~f~t~---~lQmLvLDEADR~L-DMGFk------ 233 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDENP-NFSTS---NLQMLVLDEADRML-DMGFK------ 233 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhcC-CCCCC---cceEEEeccHHHHH-HHhHH------
Confidence 99999999987 44666678899999999997 56776543 22233 89999999999997 87643
Q ss_pred CCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcce
Q 005155 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dY 230 (711)
..++.|+..|++ .||.+ |||++-. .-+... | .|--+|..|
T Consensus 234 ---------~tL~~Ii~~lP~---------~RQTL-----------------LFSATqt--~svkdL--a-RLsL~dP~~ 273 (758)
T KOG0343|consen 234 ---------KTLNAIIENLPK---------KRQTL-----------------LFSATQT--KSVKDL--A-RLSLKDPVY 273 (758)
T ss_pred ---------HHHHHHHHhCCh---------hheee-----------------eeecccc--hhHHHH--H-HhhcCCCcE
Confidence 478899999975 67777 7887631 122222 1 222356666
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~ 310 (711)
|-. | ++.+ ++|- .-|++.|
T Consensus 274 vsv------------------------h-------------e~a~-------------------~atP----~~L~Q~y- 292 (758)
T KOG0343|consen 274 VSV------------------------H-------------ENAV-------------------AATP----SNLQQSY- 292 (758)
T ss_pred EEE------------------------e-------------cccc-------------------ccCh----hhhhheE-
Confidence 541 1 0000 0000 0112222
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEeCCCc
Q 005155 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNARPK 388 (711)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLnA~~~ 388 (711)
+.+...+|...+-.-|... -....|||..|..++..++..+.+. |+|.--||++++
T Consensus 293 --------------------~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~ 350 (758)
T KOG0343|consen 293 --------------------VIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS 350 (758)
T ss_pred --------------------EEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh
Confidence 2334567888888888763 4568999999999999999999874 899999999887
Q ss_pred chHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|..|-...-..--....|..||++|.||.|+.
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 76664333333333668999999999999995
No 37
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=239.52 Aligned_cols=283 Identities=21% Similarity=0.245 Sum_probs=212.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-------------CCEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-------------~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
+|.|||-.+++++.+|+ +|+.+||+|||.+|++|+.-.++.. .++.|++||++||.|.+++.++|
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 69999999999999998 9999999999999999998666642 46999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh-cCC
Q 005155 67 HRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-EGR 143 (711)
Q Consensus 67 y~~LGLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD-ea~ 143 (711)
--..++.+..++++.+ .+.+...-+|||.++||++| -|.+... ..-+. .+.|+|+||||.|| | .++
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL-~d~~e~g------~i~l~---~~k~~vLDEADrMl-D~mgF 244 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRL-KDLIERG------KISLD---NCKFLVLDEADRML-DEMGF 244 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchh-hhhhhcc------eeehh---hCcEEEecchHHhh-hhccc
Confidence 9999999999999854 45556667899999999998 3444332 22333 67899999999997 7 776
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
-| .+.+++.++.... ...++.. ||+++. +..++. +.+..+
T Consensus 245 ~p---------------~Ir~iv~~~~~~~-----~~~~qt~-----------------mFSAtf--p~~iq~-l~~~fl 284 (482)
T KOG0335|consen 245 EP---------------QIRKIVEQLGMPP-----KNNRQTL-----------------LFSATF--PKEIQR-LAADFL 284 (482)
T ss_pred cc---------------cHHHHhcccCCCC-----ccceeEE-----------------EEeccC--Chhhhh-hHHHHh
Confidence 66 7888888775321 1245555 788874 455555 433333
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
..+ |+.-
T Consensus 285 -~~~--yi~l---------------------------------------------------------------------- 291 (482)
T KOG0335|consen 285 -KDN--YIFL---------------------------------------------------------------------- 291 (482)
T ss_pred -hcc--ceEE----------------------------------------------------------------------
Confidence 212 4441
Q ss_pred HHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhh---hcC----CcEEEEecchhhHHHHHHHHHHC
Q 005155 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF---RLG----RPVLVGSTSVENSEYLSDLLKQQ 376 (711)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~---~~g----rPVLV~t~Si~~SE~Ls~~L~~~ 376 (711)
.|..|-+..+... .-.+|..+.+|..++++...... .++ .-+|||+++++.+..+...|...
T Consensus 292 --------aV~rvg~~~~ni~---q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 292 --------AVGRVGSTSENIT---QKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred --------EEeeeccccccce---eEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 1111111112111 12447778888888888776443 122 24999999999999999999999
Q ss_pred CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 377 GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 377 gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+++.-+|+...+.++|..+-. +.| +-.|.||||+|.||.||+
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNG-KAPVLVATNVAARGLDIP 404 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCC
Confidence 9999999998777778877766 445 567999999999999996
No 38
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=6.2e-25 Score=234.78 Aligned_cols=277 Identities=22% Similarity=0.259 Sum_probs=201.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+|.|+|-.+.+++++|+ |.-.+||.||||+++||.+++-+ .|.+|.|+||+++||.+. |-+-..|.+-
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqi-e~e~~kysyn 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQI-EGEVKKYSYN 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHH-HhHHhHhhhc
Confidence 69999999999999999 88889999999999999987644 356899999999999976 4556689999
Q ss_pred CCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+...|++++-+..+. ...-+.+|+.+||++| -|..-+|. ..++ ...|+++||||.|| |+++.|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrl-ndL~~~n~------i~l~---siTYlVlDEADrML-DMgFEp--- 386 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL-NDLQMDNV------INLA---SITYLVLDEADRML-DMGFEP--- 386 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchH-hhhhhcCe------eeee---eeEEEEecchhhhh-cccccH---
Confidence 9999999987653333 3446789999999998 45444443 2355 89999999999997 888877
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
++.++.-...+ +|++.+|. ++ |++-|... |..+++.-
T Consensus 387 ------------qIrkilldiRP---------DRqtvmTS-----------------AT--WP~~VrrL--a~sY~Kep- 423 (629)
T KOG0336|consen 387 ------------QIRKILLDIRP---------DRQTVMTS-----------------AT--WPEGVRRL--AQSYLKEP- 423 (629)
T ss_pred ------------HHHHHhhhcCC---------cceeeeec-----------------cc--CchHHHHH--HHHhhhCc-
Confidence 55555444433 35555333 22 44444432 33333311
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+-+-..++.+
T Consensus 424 --------------------------------------~~v~vGsLdL-------------------------------- 433 (629)
T KOG0336|consen 424 --------------------------------------MIVYVGSLDL-------------------------------- 433 (629)
T ss_pred --------------------------------------eEEEecccce--------------------------------
Confidence 1111111111
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
+.+-+-+ ...+..++.+|| +++....+.+...-.|+|||.+.-.++.||.-|.-.||..+-||++.+
T Consensus 434 -----~a~~sVk-------Q~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~ 500 (629)
T KOG0336|consen 434 -----VAVKSVK-------QNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNRE 500 (629)
T ss_pred -----eeeeeee-------eeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChh
Confidence 1111111 012345677788 466666666778889999999999999999999999999999999888
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|..+|..+-. +.| .-+|+|||++|.||+|+.
T Consensus 501 Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 501 QSDREMALEDFKSG-EVRILVATDLASRGLDVP 532 (629)
T ss_pred hhhHHHHHHhhhcC-ceEEEEEechhhcCCCch
Confidence 8888887765 556 558999999999999994
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.2e-23 Score=234.19 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=178.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++.++++|+ ++.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+. .+|+++..+.+
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~----~~gi~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK----ASGIPATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH----HcCCcEEEEeC
Confidence 47899999999999998 99999999999999999973 46778999999999987666654 57999999888
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhHH-HHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 80 GMIPEERRSNY------RCDITYTNNSELGFDY-LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~elgfDy-LrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+.+..+++..+ ..+|+|+||..+.-.. +...+. ... .+.++||||||.++ +-+..
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~---~i~~iViDEaH~i~-~~g~~-------- 145 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERK---GITLIAVDEAHCIS-QWGHD-------- 145 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcC---CcCEEEEeCCcccC-ccccc--------
Confidence 87766544332 3689999998763221 222221 123 79999999999985 21100
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
-...|..+..+...++ +
T Consensus 146 --fr~~~~~l~~l~~~~~--------------------------------------------------------~----- 162 (470)
T TIGR00614 146 --FRPDYKALGSLKQKFP--------------------------------------------------------N----- 162 (470)
T ss_pred --cHHHHHHHHHHHHHcC--------------------------------------------------------C-----
Confidence 0000100000000000 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l 311 (711)
..+.++|+|+... .+++.+..++
T Consensus 163 --------------------------------------------------------~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 163 --------------------------------------------------------VPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred --------------------------------------------------------CceEEEecCCCHHHHHHHHHHcCC
Confidence 1245777777654 3445555444
Q ss_pred C---eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 312 P---VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 312 ~---vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
. ++....++|..+ ..+.......+..+.+.+.. ...+..+||||.|++.++.+++.|.+.|+++..+|+++.
T Consensus 187 ~~~~~~~~s~~r~nl~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 187 KNPQIFCTSFDRPNLY----YEVRRKTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCcEEeCCCCCCCcE----EEEEeCCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 2 223333343322 11111122344455555543 246778899999999999999999999999999999876
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+|+..+-. ..| .-.|.|||+++|||+|+.
T Consensus 262 ~~eR~~i~~~F~~g-~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 262 ISARDDVHHKFQRD-EIQVVVATVAFGMGINKP 293 (470)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEechhhccCCcc
Confidence 6666654444 455 568999999999999995
No 40
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=1.3e-23 Score=247.58 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-c--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+||++|..+++.+++|+ |+...||+|||++|.||++ .+| . +..+.+++|++.||.+..+.+..+. ..|++++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL-~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL-SALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHH-HHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 69999999999999998 9999999999999999996 555 3 4579999999999999999999886 56899998
Q ss_pred EcCCCCHHHHHhc-cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 77 IQRGMIPEERRSN-YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 77 i~~~~~~~~r~~a-Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
..|+.+.++|+.. -+++|+++||..+....|.++.. -...++ ++.++||||||.++
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~---~l~~vViDEah~~~ 170 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLR---RLRYVVIDECHSYR 170 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHh---cCCEEEEeChhhcc
Confidence 8888887666543 35899999996553333322211 112355 89999999999974
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=4.9e-23 Score=224.77 Aligned_cols=126 Identities=18% Similarity=0.270 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..+...+.+|+ |+.+.||+|||++|.+|+. ..+ .+..+.+++|+..||.|-.+.+..+...+++.+.
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l-~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL-QLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEE
Confidence 58999999999999988 9999999999999999987 444 3567999999999999999999999999999998
Q ss_pred EEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++...... ...-.+||+++|++.+ ++.++.. ..... .++++||||||.++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~i~lvViDEah~~~ 183 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRV-YDMIDKR------HLRVD---DLKLFILDEADEML 183 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHH-HHHHHhC------Ccccc---cccEEEEecHHHHH
Confidence 88887654332 2233579999999987 5555432 12244 79999999999986
No 42
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.8e-24 Score=231.77 Aligned_cols=281 Identities=20% Similarity=0.230 Sum_probs=199.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|+|..++|+-+-|+ +|...||+|||.+|+||.+-.-|. --.|.|++|+++||.|-+.-..++.+|..|+
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~ 282 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDIT 282 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccce
Confidence 59999999999888888 899999999999999999743332 2379999999999999999999999999999
Q ss_pred EEEEcCCCCH--HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 74 VGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 74 v~~i~~~~~~--~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
||+..||++- |+.-..-..|||++|||+| .|.||+... ..+. ++.++|+||||+|| |++
T Consensus 283 ~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl-IDHlrNs~s-----f~ld---siEVLvlDEADRML-eeg--------- 343 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRSRPDIVIATPGRL-IDHLRNSPS-----FNLD---SIEVLVLDEADRML-EEG--------- 343 (691)
T ss_pred eeeeecCccHHHHHHHHhhCCCEEEecchhH-HHHhccCCC-----cccc---ceeEEEechHHHHH-HHH---------
Confidence 9999999884 4444556679999999999 555555433 2344 79999999999998 554
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
+-.+++++++.+++ +||.+ |||+++ ...|.... .-.| .+-+.
T Consensus 344 ------FademnEii~lcpk---------~RQTm-----------------LFSATM--teeVkdL~-slSL-~kPvr-- 385 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPK---------NRQTM-----------------LFSATM--TEEVKDLA-SLSL-NKPVR-- 385 (691)
T ss_pred ------HHHHHHHHHHhccc---------cccce-----------------eehhhh--HHHHHHHH-Hhhc-CCCeE--
Confidence 34579999999964 78877 899874 33444332 1122 22211
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
+.||+++-+.. +| .+||
T Consensus 386 ------ifvd~~~~~a~-------~L--------------------------------------------tQEF------ 402 (691)
T KOG0338|consen 386 ------IFVDPNKDTAP-------KL--------------------------------------------TQEF------ 402 (691)
T ss_pred ------EEeCCccccch-------hh--------------------------------------------hHHH------
Confidence 22444221111 11 1222
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchH
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~ 391 (711)
+.|-+.+.-- +-.-++..|.+.. ..-++||+.+.+.+..+.=+|-=.|+...-||+...|.+
T Consensus 403 --iRIR~~re~d--------------Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 403 --IRIRPKREGD--------------REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQ 464 (691)
T ss_pred --heeccccccc--------------cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHH
Confidence 2233322211 1112233333322 457999999999999999999889999888999765655
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|=..+-..--..-.|+|||++|.||.||.
T Consensus 465 RlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 465 RLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 54444443334668999999999999995
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=1.4e-22 Score=234.42 Aligned_cols=266 Identities=18% Similarity=0.198 Sum_probs=177.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|...|+.+..+.+. .+|+.+.++.+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~---~~g~tlVisPl~sL~~dqv~~l~----~~gi~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV---LDGLTLVVSPLISLMKDQVDQLL----ANGVAAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH---cCCCEEEEecHHHHHHHHHHHHH----HcCCcEEEEcC
Confidence 47799999999999988 99999999999999999973 35579999999999988776654 46999999888
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+.+++...+ ..+|+|+||..+.-+.+.+.+. .. ++.++||||||.++ +-+..
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~-------~~---~l~~iVIDEaH~i~-~~G~~--------- 157 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLA-------HW---NPALLAVDEAHCIS-QWGHD--------- 157 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHh-------hC---CCCEEEEeCccccc-cccCc---------
Confidence 88766554333 3589999999885433333222 22 68999999999984 21100
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
-...|..+..+...++ +
T Consensus 158 -fr~~y~~L~~l~~~~p--------------------------------------------------------~------ 174 (607)
T PRK11057 158 -FRPEYAALGQLRQRFP--------------------------------------------------------T------ 174 (607)
T ss_pred -ccHHHHHHHHHHHhCC--------------------------------------------------------C------
Confidence 0000111111100000 0
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~ 312 (711)
..+.++|+|+... ..++.+.+++.
T Consensus 175 -------------------------------------------------------~~~v~lTAT~~~~~~~di~~~l~l~ 199 (607)
T PRK11057 175 -------------------------------------------------------LPFMALTATADDTTRQDIVRLLGLN 199 (607)
T ss_pred -------------------------------------------------------CcEEEEecCCChhHHHHHHHHhCCC
Confidence 0134677777653 33455555542
Q ss_pred --eEEeC-CCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 --VIEVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 --vv~IP-t~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
++.+. .++|..+. . ......+...++..+.. ..+.++||||.|++.++.++..|.+.|+++..+||++..
T Consensus 200 ~~~~~~~~~~r~nl~~----~-v~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~ 272 (607)
T PRK11057 200 DPLIQISSFDRPNIRY----T-LVEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDN 272 (607)
T ss_pred CeEEEECCCCCCccee----e-eeeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 23232 23333221 1 11122334445555543 467899999999999999999999999999999998766
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| .-.|.|||+++|||+||.
T Consensus 273 ~~R~~i~~~F~~g-~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 273 DVRADVQEAFQRD-DLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHHHHCC-CCCEEEEechhhccCCCC
Confidence 666544433 345 567999999999999994
No 44
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.2e-24 Score=235.92 Aligned_cols=297 Identities=21% Similarity=0.248 Sum_probs=196.0
Q ss_pred CCCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHH---------HHH-----cCCC--EEEEecCHHHHHHHHH
Q 005155 1 MRHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYL---------NAL-----TGEG--VHVVTVNDYLAQRDAE 61 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l---------~AL-----~G~~--VhVvT~NdyLA~RDae 61 (711)
.+|+++|.+..++...|+ +.-+.||+||||+|++|++- +.+ .+.+ ..|+||+++||-|...
T Consensus 202 s~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~ 281 (731)
T KOG0347|consen 202 SRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQ 281 (731)
T ss_pred CCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHH
Confidence 379999999999999996 88899999999999999974 222 2334 8899999999999999
Q ss_pred HHHHHhhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHH-HhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 62 WMERVHRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLR-DNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 62 ~~~~~y~~LGLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLr-D~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
-+..+..+-|++|..|+||+. .|+|-..|..|||++|||+| +..+. +|.- -...+ .+.++||||+|+|+
T Consensus 282 Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRl-weli~e~n~~----l~~~k---~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 282 HLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRL-WELIEEDNTH----LGNFK---KVKCLVLDEADRMV 353 (731)
T ss_pred HHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHH-HHHHHhhhhh----hhhhh---hceEEEEccHHHHh
Confidence 999999999999999999988 56777888889999999998 33332 2211 11233 78999999999998
Q ss_pred hhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHH
Q 005155 139 IDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAL 218 (711)
Q Consensus 139 iDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL 218 (711)
-+. -|..+.++.+.|.+ ..+. .++|.+ .||++..+.+...
T Consensus 354 ekg----------------hF~Els~lL~~L~e-~~~~---~qrQTl-----------------VFSATlt~~~~~~--- 393 (731)
T KOG0347|consen 354 EKG----------------HFEELSKLLKHLNE-EQKN---RQRQTL-----------------VFSATLTLVLQQP--- 393 (731)
T ss_pred hhc----------------cHHHHHHHHHHhhh-hhcc---cccceE-----------------EEEEEeehhhcCh---
Confidence 554 45567777777752 2222 234444 4554432221111
Q ss_pred HHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHh---HhCC-------ccccCceeeeeeeehhHhhhc
Q 005155 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA---KEGL-------KIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 219 ~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEa---KEgv-------~I~~es~t~a~Is~q~~F~~Y 288 (711)
++...++. +++ +-+.|-||. |-|+ .++|++
T Consensus 394 -~~~~~k~~----------------------~k~--~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~--------------- 433 (731)
T KOG0347|consen 394 -LSSSRKKK----------------------DKE--DELNAKIQHLMKKIGFRGKPKIIDLTPQS--------------- 433 (731)
T ss_pred -hHHhhhcc----------------------chh--hhhhHHHHHHHHHhCccCCCeeEecCcch---------------
Confidence 11111100 000 001111110 1111 112222
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~ 368 (711)
+||++-.+-+ +..|+ .-+|+--..|.+. -.| ..||||+||..+..
T Consensus 434 -------~ta~~l~Es~--------I~C~~----~eKD~ylyYfl~r---------------yPG-rTlVF~NsId~vKR 478 (731)
T KOG0347|consen 434 -------ATASTLTESL--------IECPP----LEKDLYLYYFLTR---------------YPG-RTLVFCNSIDCVKR 478 (731)
T ss_pred -------hHHHHHHHHh--------hcCCc----cccceeEEEEEee---------------cCC-ceEEEechHHHHHH
Confidence 2222211100 11122 1222222223221 123 36999999999999
Q ss_pred HHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 369 Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+-+|...+|+.-.|||.+-|..|=..+-..+-.+..|.|||+.|.||.||.
T Consensus 479 Lt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 479 LTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 9999999999999999988777777778777888999999999999999994
No 45
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.92 E-value=1.9e-24 Score=229.86 Aligned_cols=276 Identities=22% Similarity=0.286 Sum_probs=200.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+.|+|+|+.|.++.+.|+ |.-.-||+||||+|+||+...||. |.--.||||+++||+|-++-+..++
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 469999999999999999 888999999999999999999984 5668999999999999999999998
Q ss_pred hhcC------CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 68 RFLG------LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 68 ~~LG------Ltv~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
..|+ +.+++..++++..+.- -.-+.+|+++||++| -|.|-..+. .+. -++|+.+||||+| +
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL-~DmL~KK~~------sLd---~CRyL~lDEADRm-i 339 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL-MDMLAKKIM------SLD---ACRYLTLDEADRM-I 339 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH-HHHHHHhhc------cHH---HHHHhhhhhHHHH-h
Confidence 8775 5666777888754443 345779999999998 565543322 233 5779999999999 5
Q ss_pred hcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHH
Q 005155 140 DEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALK 219 (711)
Q Consensus 140 Dea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~ 219 (711)
|.++. ..+..+...|+ .+||.+ |||++.+ +.|.+-
T Consensus 340 DmGFE---------------ddir~iF~~FK---------~QRQTL-----------------LFSATMP--~KIQ~F-- 374 (610)
T KOG0341|consen 340 DMGFE---------------DDIRTIFSFFK---------GQRQTL-----------------LFSATMP--KKIQNF-- 374 (610)
T ss_pred hccch---------------hhHHHHHHHHh---------hhhhee-----------------eeecccc--HHHHHH--
Confidence 88753 35666666665 367777 8998863 444432
Q ss_pred HHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcc
Q 005155 220 AKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299 (711)
Q Consensus 220 A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~ 299 (711)
|+.-+-+ +|--+-||. |-|.
T Consensus 375 AkSALVK------------PvtvNVGRA------------------------------------------------GAAs 394 (610)
T KOG0341|consen 375 AKSALVK------------PVTVNVGRA------------------------------------------------GAAS 394 (610)
T ss_pred HHhhccc------------ceEEecccc------------------------------------------------cccc
Confidence 2222211 111122221 1111
Q ss_pred cHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 300 te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
++|+ ..+-|...+.|.--+. +|. .+..-||||||+...+++.+.++|.-.|+.
T Consensus 395 -----------ldVi-------------QevEyVkqEaKiVylL-eCL--QKT~PpVLIFaEkK~DVD~IhEYLLlKGVE 447 (610)
T KOG0341|consen 395 -----------LDVI-------------QEVEYVKQEAKIVYLL-ECL--QKTSPPVLIFAEKKADVDDIHEYLLLKGVE 447 (610)
T ss_pred -----------hhHH-------------HHHHHHHhhhhhhhHH-HHh--ccCCCceEEEeccccChHHHHHHHHHccce
Confidence 0110 0000333344443333 222 256678999999999999999999999999
Q ss_pred eEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 380 HNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 380 ~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
...+|+++.|.+|++.|-+ ++| +..|.|||+.|..|.|+.
T Consensus 448 avaIHGGKDQedR~~ai~afr~g-kKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 448 AVAIHGGKDQEDRHYAIEAFRAG-KKDVLVATDVASKGLDFP 488 (610)
T ss_pred eEEeecCcchhHHHHHHHHHhcC-CCceEEEecchhccCCCc
Confidence 9999999888889999988 788 668999999999999995
No 46
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=4.8e-23 Score=224.87 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=210.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------C--CCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------G--EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G--~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|||+|-.+.+.-+.|+ |.-.+||+|||.+|+.|+..+-.. | .-..|++|+++||.|.+.+...|.+..|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 58999999999999999 778899999999999999977552 3 3466899999999999999999999999
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
|.+.+++++++.. .+...-+|.|+++||++| .|.+... ...++ ...|+|+||+|+|+ |.++.|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl-----id~VkmK--atn~~---rvS~LV~DEadrmf-dmGfe~---- 389 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL-----IDMVKMK--ATNLS---RVSYLVLDEADRMF-DMGFEP---- 389 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHH-----HHHHHhh--cccce---eeeEEEEechhhhh-ccccHH----
Confidence 9999999998743 444557799999999998 4443332 23344 68999999999996 887655
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
++..|.....+ ++|.+ +|+++ +...|..+ |+.++. |.
T Consensus 390 -----------qVrSI~~hirp---------drQtl-----------------lFsaT--f~~kIe~l--ard~L~-dp- 426 (731)
T KOG0339|consen 390 -----------QVRSIKQHIRP---------DRQTL-----------------LFSAT--FKKKIEKL--ARDILS-DP- 426 (731)
T ss_pred -----------HHHHHHhhcCC---------cceEE-----------------Eeecc--chHHHHHH--HHHHhc-CC-
Confidence 78888888865 56766 78876 34455544 455542 11
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
|-+| +|.+- +|-+ -||
T Consensus 427 -------VrvV---qg~vg-------------ean~------------dIT----------------------------- 442 (731)
T KOG0339|consen 427 -------VRVV---QGEVG-------------EANE------------DIT----------------------------- 442 (731)
T ss_pred -------eeEE---Eeehh-------------cccc------------chh-----------------------------
Confidence 1111 11000 0000 000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....|+.+...||..++..+-+....| .||||.+-...+|.++..|+-.|+.+.+||+++.|
T Consensus 443 -----------------Q~V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdq 504 (731)
T KOG0339|consen 443 -----------------QTVSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQ 504 (731)
T ss_pred -----------------heeeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhh
Confidence 002345678899999998887776555 89999999999999999999999999999999878
Q ss_pred hHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|-..+-.---....|.|||+.|.||+||.
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 7777566553333579999999999999997
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=1.7e-22 Score=236.56 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=103.8
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|..++..+.++ ++++..||+|||++|++|++.....|.+|.|++|++.||.|.++.+..++..+|++
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~ 340 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIR 340 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcE
Confidence 5889999999988765 49999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|++++++++..+|+..+ .+||++||++.+ .+. ...+ ++.++||||+|.+
T Consensus 341 v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~---~l~lvVIDE~Hrf 395 (681)
T PRK10917 341 VALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFH---NLGLVIIDEQHRF 395 (681)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhc---ccceEEEechhhh
Confidence 99999999977665433 489999998765 221 1234 7899999999985
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=1.3e-21 Score=225.60 Aligned_cols=265 Identities=20% Similarity=0.227 Sum_probs=177.9
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|+|.-++.++++|+ ++.|.||.|||++|.+|+++ .+..+.||+|...|.++..+.+.. +|+.+..+.++
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~----~gi~~~~~~s~ 86 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRA----AGVAAAYLNST 86 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHH----cCCcEEEEeCC
Confidence 5689999999999988 99999999999999999973 456688999999999887776554 69999999888
Q ss_pred CCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 81 MIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 81 ~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
.+..++... -..+|+|+||..+.-+.++..+. .. .+.++||||||.+. +-+. .
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~-------~~---~l~~iViDEaH~i~-~~g~----------~ 145 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQ-------RI---PIALVAVDEAHCVS-QWGH----------D 145 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHh-------cC---CCCEEEEeCCcccc-cccC----------c
Confidence 886655433 24699999999885444433221 22 78999999999984 2100 0
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
-...|..+..+...++.
T Consensus 146 frp~y~~l~~l~~~~~~--------------------------------------------------------------- 162 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ--------------------------------------------------------------- 162 (591)
T ss_pred cHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 00011111111111110
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC-
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP- 312 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~- 312 (711)
..+.++|+|+... ...+.+..++.
T Consensus 163 ------------------------------------------------------~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 163 ------------------------------------------------------VPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred ------------------------------------------------------CCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 0134566666543 23444444432
Q ss_pred -eEEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 313 -VIEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 313 -vv~I-Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
.+.+ +.++|... ..+ .....+...+.+.+... .++++||||.|...++.+++.|...|++...+|+++...
T Consensus 189 ~~~~~~~~~r~nl~----~~v-~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 189 ANEFITSFDRPNLR----FSV-VKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNK 261 (591)
T ss_pred CCeEecCCCCCCcE----EEE-EeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHH
Confidence 1222 22233211 111 12234566666666542 378999999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+|+..+-. ..| .-.|.|||+.+|+|+|+.
T Consensus 262 ~R~~i~~~F~~g-~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 262 VRAENQEDFLYD-DVKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHHHHHcC-CCcEEEEechhhccCcCC
Confidence 66654443 445 468999999999999974
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=9e-22 Score=234.74 Aligned_cols=269 Identities=17% Similarity=0.130 Sum_probs=173.5
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|+|..++.+++.|+ |+.|.||.||||+|.||+++ .+..+.||+|...|++.....+ . .+|+.+..+.++
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---~~GiTLVISPLiSLmqDQV~~L---~-~~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMNL---L-QANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHH---H-hCCCeEEEEECC
Confidence 5789999999999998 99999999999999999974 4667999999999998543333 2 269999999999
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchh-hHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC--Cceecc
Q 005155 81 MIPEERRSNY--------RCDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR--NPLLIS 149 (711)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~elg-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~--tPLiiS 149 (711)
++..++...+ ..+|+|+||..+. .|.+.+.+.. ...+ ..+.++||||||.|+ +-+. -|
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~----L~~~--~~LslIVIDEAHcVS-qWGhDFRp---- 602 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN----LNSR--GLLARFVIDEAHCVS-QWGHDFRP---- 602 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh----hhhc--cccceeccCcchhhh-hcccchHH----
Confidence 8866554322 3599999999874 2445544421 1111 157889999999985 2210 00
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
.|..+..+...++.
T Consensus 603 --------dYr~L~~Lr~~fp~---------------------------------------------------------- 616 (1195)
T PLN03137 603 --------DYQGLGILKQKFPN---------------------------------------------------------- 616 (1195)
T ss_pred --------HHHHHHHHHHhCCC----------------------------------------------------------
Confidence 11111111111100
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH-HHHHHH
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKM 308 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~-~Ef~~i 308 (711)
..+.++|+||.... +++.+.
T Consensus 617 -----------------------------------------------------------vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 617 -----------------------------------------------------------IPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred -----------------------------------------------------------CCeEEEEecCCHHHHHHHHHH
Confidence 01335666665432 334444
Q ss_pred cCCCe-EEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 309 FQMPV-IEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 309 Y~l~v-v~I--Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
.++.- +++ ..++|..+ ..+..........|...+... ..+.+.||||.|..++|.++..|.+.|+++..+||
T Consensus 638 L~l~~~~vfr~Sf~RpNL~----y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHA 712 (1195)
T PLN03137 638 LGLVNCVVFRQSFNRPNLW----YSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHG 712 (1195)
T ss_pred cCCCCcEEeecccCccceE----EEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeC
Confidence 44421 111 11222211 111111111223444444332 23568999999999999999999999999999999
Q ss_pred CCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++...+|+..+-. ..| ...|.|||+.+|||+|+.
T Consensus 713 GLs~eeR~~vqe~F~~G-ei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKD-EINIICATVAFGMGINKP 747 (1195)
T ss_pred CCCHHHHHHHHHHHhcC-CCcEEEEechhhcCCCcc
Confidence 9777666654444 334 568999999999999994
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=2.2e-21 Score=232.55 Aligned_cols=128 Identities=22% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHH----
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMER---- 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~---- 65 (711)
.|+|+|..+...+++|+ |+.+.||+|||++|.+|++ ..|. |..|.+|+|+..||.+.+..+..
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil-~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAII-DELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHH-HHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 9999999999999999997 4442 23589999999999988765442
Q ss_pred ---Hhh----hc-CCeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechh
Q 005155 66 ---VHR----FL-GLSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVD 135 (711)
Q Consensus 66 ---~y~----~L-GLtv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvD 135 (711)
++. .+ +++|++..|+.+..+++.. -.+||+++||..|. ++|... .-...++ +++++||||+|
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~~----~~~~~l~---~l~~VVIDE~H 182 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNSP----KFREKLR---TVKWVIVDEIH 182 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcCh----hHHHHHh---cCCEEEEechh
Confidence 221 22 7788999999887766543 35799999999872 333211 1011345 89999999999
Q ss_pred hhh
Q 005155 136 SVL 138 (711)
Q Consensus 136 s~L 138 (711)
.++
T Consensus 183 ~l~ 185 (876)
T PRK13767 183 SLA 185 (876)
T ss_pred hhc
Confidence 986
No 51
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.1e-22 Score=206.50 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=202.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|-.+|--+++.+++|+ |||.+.|.|||.+|++-++ .++. .-+|.|++|+++||.|.-+-+..+...+|+.|-
T Consensus 49 kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vl-q~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVL-QSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeee-eecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 57889999999999999 9999999999999988774 5542 347999999999999999999999999999998
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...|+.+ .+.|+..|++++|-|||+++ ||.++... +| .|....+|+||+|.|| +++
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv-~dmikr~~--------L~-tr~vkmlVLDEaDemL-~kg----------- 185 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRV-LDMIKRRS--------LR-TRAVKMLVLDEADEML-NKG----------- 185 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchH-HHHHHhcc--------cc-ccceeEEEeccHHHHH-Hhh-----------
Confidence 8877654 67788899999999999998 78776432 22 3489999999999998 443
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-.++..+.+.|++ .-|+. ++|++ +++.|.... ..++. |
T Consensus 186 ----fk~Qiydiyr~lp~---------~~Qvv-----------------~~SAT--lp~eilemt--~kfmt-d------ 224 (400)
T KOG0328|consen 186 ----FKEQIYDIYRYLPP---------GAQVV-----------------LVSAT--LPHEILEMT--EKFMT-D------ 224 (400)
T ss_pred ----HHHHHHHHHHhCCC---------CceEE-----------------EEecc--CcHHHHHHH--HHhcC-C------
Confidence 22356667777765 34554 56666 456666543 33332 2
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
-|.|.-+-.+-.. +|+.|+
T Consensus 225 --pvrilvkrdeltl------EgIKqf----------------------------------------------------- 243 (400)
T KOG0328|consen 225 --PVRILVKRDELTL------EGIKQF----------------------------------------------------- 243 (400)
T ss_pred --ceeEEEecCCCch------hhhhhh-----------------------------------------------------
Confidence 2222211111111 122221
Q ss_pred EEeCCCCCcccccCCCeEEeChhH-HHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~-K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.|-...++ |+.++++.-... .-...+|||++..++++|++.|.+.+....-+|+++++.+|
T Consensus 244 ----------------~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkER 305 (400)
T KOG0328|consen 244 ----------------FVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKER 305 (400)
T ss_pred ----------------eeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHH
Confidence 11233334 666777655433 22356899999999999999999999999999999988888
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+.+-. ++| ..+|.|+|+.-.||+|+.
T Consensus 306 d~im~dFRsg-~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 306 DKIMNDFRSG-KSRVLITTDVWARGIDVQ 333 (400)
T ss_pred HHHHHHhhcC-CceEEEEechhhccCCcc
Confidence 866655 677 679999999999999994
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=1.1e-21 Score=234.94 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+++|..++..+.++ ++++..||+|||++|++|++-....|++|.|++|+..||.|.++.+..++..++++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 4899999999988764 39999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++++.+..+..+++... .+||++||+. .|.. ....+ ++.++||||+|.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-----ll~~-------~v~f~---~L~llVIDEahrf 585 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHK-----LLQK-------DVKFK---DLGLLIIDEEQRF 585 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-----HhhC-------CCCcc---cCCEEEeeccccc
Confidence 99998887765544322 4799999982 2221 12344 8999999999985
No 53
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.3e-22 Score=234.97 Aligned_cols=280 Identities=19% Similarity=0.270 Sum_probs=211.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+|.|+|-.++|+++.|+ |...+||+|||++|.||.+.+-+ .|.-..|++||++||.|..+|+.+|...+|
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999 99999999999999999996544 355689999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhh-hhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
+.+.+++++....+. ...-.|+|++||+|++ .|.| +.+... ..+| ...|+++||+|.|+ |.++.|
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm-iD~l----~~n~grvtnlr---R~t~lv~deaDrmf-dmgfeP--- 534 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM-IDIL----CANSGRVTNLR---RVTYLVLDEADRMF-DMGFEP--- 534 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchh-hhhH----hhcCCcccccc---ccceeeechhhhhh-eeccCc---
Confidence 999999998764332 2345699999999998 4444 333211 2233 67799999999999 999988
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
+...|++.+.+ .||.. +|+++ +++.+. ++ |...+++-+
T Consensus 535 ------------q~~~Ii~nlrp---------drQtv-----------------lfSat--fpr~m~-~l-a~~vl~~Pv 572 (997)
T KOG0334|consen 535 ------------QITRILQNLRP---------DRQTV-----------------LFSAT--FPRSME-AL-ARKVLKKPV 572 (997)
T ss_pred ------------ccchHHhhcch---------hhhhh-----------------hhhhh--hhHHHH-HH-HHHhhcCCe
Confidence 33335666643 34443 67766 445544 44 555554443
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
. +||+- .+++.. -|
T Consensus 573 e--------iiv~~-~svV~k----------------------------~V----------------------------- 586 (997)
T KOG0334|consen 573 E--------IIVGG-RSVVCK----------------------------EV----------------------------- 586 (997)
T ss_pred e--------EEEcc-ceeEec----------------------------cc-----------------------------
Confidence 2 23331 011110 01
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
.....|-..+.+|+..+.+.+....+ .-+++||+.+.+++..+.+.|.+.|++|..||+...
T Consensus 587 -----------------~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~ 648 (997)
T KOG0334|consen 587 -----------------TQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD 648 (997)
T ss_pred -----------------eEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc
Confidence 01112234478999999888887765 569999999999999999999999999999999988
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+.|+..|.. +.| +-.++|||+.+.||+|++
T Consensus 649 q~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 649 QHDRSSTIEDFKNG-VVNLLVATSVVARGLDVK 680 (997)
T ss_pred hHHHHhHHHHHhcc-CceEEEehhhhhcccccc
Confidence 9999988877 666 778999999999999996
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=2.5e-21 Score=224.94 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=102.6
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|.-++..+.++ ++++..||+|||++|++|++.....|.+|.+++|+..||.|-++.+..++..+|++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 5889999999988765 49999999999999999998655688999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+++++++++..+|+... .+||++||++.+ .+. .... ++.++||||+|.+
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~-------~~~~---~l~lvVIDEaH~f 369 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEK-------VEFK---RLALVIIDEQHRF 369 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hcc-------cccc---ccceEEEechhhc
Confidence 99999999877665432 469999999755 222 1234 7899999999985
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=1e-20 Score=230.82 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=177.8
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+++|..++..+++| .+++..||.|||++|+++++.....|++|.|++|+..||.|.++.+...+..++++
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 5899999999988776 49999999999999999998666689999999999999999999999999888999
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+.++.+..+..+++.. -.+||++||+. .|+.. .... .+.++||||+|.+-.
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~-------v~~~---~L~lLVIDEahrfG~-------- 736 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSD-------VKWK---DLGLLIVDEEHRFGV-------- 736 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCC-------CCHh---hCCEEEEechhhcch--------
Confidence 9999888776665543 25799999984 23221 1233 789999999999610
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.. ...++.+.. +.+++ +++++- ..+.+..++ ..
T Consensus 737 ------------~~-~e~lk~l~~---------~~qvL-----------------l~SATp-iprtl~l~~---~g---- 769 (1147)
T PRK10689 737 ------------RH-KERIKAMRA---------DVDIL-----------------TLTATP-IPRTLNMAM---SG---- 769 (1147)
T ss_pred ------------hH-HHHHHhcCC---------CCcEE-----------------EEcCCC-CHHHHHHHH---hh----
Confidence 01 111222221 22333 345442 112221111 11
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
T Consensus 770 -------------------------------------------------------------------------------- 769 (1147)
T PRK10689 770 -------------------------------------------------------------------------------- 769 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEe
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLn 384 (711)
..++.++..|+.. |......+. ......+.++..++ ..|..|+|||++++.++.+++.|++. ++++.++|
T Consensus 770 l~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 770 MRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred CCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 1111222222221 110001111 11112233444444 34667999999999999999999987 78899999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++.+.+++..+.+ ..| .-.|.|||++++||+||.
T Consensus 843 G~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 843 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccc
Confidence 99888888877776 445 679999999999999995
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=2.4e-19 Score=211.73 Aligned_cols=129 Identities=24% Similarity=0.261 Sum_probs=99.7
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|||+|..+... +++|+ |+.+.||+|||++|.+|++-....|..+.+|+|+..||.+-++.+..+. .+|++|+..+
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v~~~t 101 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE-ELGVRVGIST 101 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEe
Confidence 589999999987 66776 9999999999999999987444478899999999999999999988754 4699999999
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
|+.+...+. .-.+||+++|+..+ ...+|.. ....+ .+.++||||+|.++ |+.|
T Consensus 102 Gd~~~~~~~-l~~~~IiV~Tpek~-~~llr~~------~~~l~---~v~lvViDE~H~l~-d~~r 154 (737)
T PRK02362 102 GDYDSRDEW-LGDNDIIVATSEKV-DSLLRNG------APWLD---DITCVVVDEVHLID-SANR 154 (737)
T ss_pred CCcCccccc-cCCCCEEEECHHHH-HHHHhcC------hhhhh---hcCEEEEECccccC-CCcc
Confidence 987643322 23579999999885 2233321 11233 79999999999874 5443
No 57
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=6.5e-20 Score=201.78 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+.||-.++++|++|+ ++..+||+||||++++|++ +.|+ |--..|+.|+++||.|.++.+..+..-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiV-q~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIV-QSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHH-HHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 48899999999999999 9999999999999999997 5664 446889999999999999999999876
Q ss_pred cCCeE-EEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 70 LGLSV-GLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 70 LGLtv-~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
+-.=| |++.||-. .+-.|..-++.|.+||||+| -|++.... ..... .+.|+|+||+|++| |-++
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL-----vDHLknT~-~i~~s---~LRwlVlDEaDrll-eLGf 304 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL-----VDHLKNTK-SIKFS---RLRWLVLDEADRLL-ELGF 304 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHH-----HHHHhccc-hheee---eeeEEEecchhHHH-hccc
Confidence 54433 44555532 34445667899999999998 45555443 23333 68999999999997 6653
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.85 E-value=1.8e-19 Score=211.88 Aligned_cols=279 Identities=15% Similarity=0.092 Sum_probs=174.4
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH----cCCCEEE-EecCHHHHHHHHHHHHHHhhhc---
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHV-VTVNDYLAQRDAEWMERVHRFL--- 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhV-vT~NdyLA~RDae~~~~~y~~L--- 70 (711)
.|||+|...+..+++|+ +++++||+|||.+++++.+ ++ ...+..| ++|+++||.|.++.+..+.+.+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll--~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL--AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc--cccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 49999999999999997 5579999999986653332 33 1234566 5699999999999999999877
Q ss_pred --------------------CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcch----hh------h
Q 005155 71 --------------------GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANS----EQ------L 118 (711)
Q Consensus 71 --------------------GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~----~~------~ 118 (711)
+++|.++.|+.+ ++.+.....++|++|| .|.+..+...+. .. -
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-----~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-----VDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-----HHHHcCCccccccccccccccchhh
Confidence 589999999965 4455555678999999 466654432100 00 0
Q ss_pred hcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhc
Q 005155 119 VMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMAL 198 (711)
Q Consensus 119 v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~ 198 (711)
.+. ...++|+|||| | |.++ ...+.+|.+.+..... ...+++.
T Consensus 168 ~L~---~v~~LVLDEAD--L-d~gF---------------~~~l~~Il~~l~rp~~----~rprQtL------------- 209 (844)
T TIGR02621 168 FLG---QDALIVHDEAH--L-EPAF---------------QELLKQIMNEQQRPPD----FLPLRVV------------- 209 (844)
T ss_pred hhc---cceEEEEehhh--h-cccc---------------HHHHHHHHHhcccCcc----cccceEE-------------
Confidence 133 67899999999 3 5543 3467777775421100 0124555
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeee
Q 005155 199 ETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQ 278 (711)
Q Consensus 199 ~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~ 278 (711)
+||++.+ ..+... +..++..+ +.+. | ..+..+...
T Consensus 210 ----LFSAT~p--~ei~~l--~~~~~~~p--~~i~------V-----------------------------~~~~l~a~k 244 (844)
T TIGR02621 210 ----ELTATSR--TDGPDR--TTLLSAED--YKHP------V-----------------------------LKKRLAAKK 244 (844)
T ss_pred ----EEecCCC--ccHHHH--HHHHccCC--ceee------c-----------------------------ccccccccc
Confidence 6777752 112221 22332222 1110 0 000011111
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHH-hhhcCCcEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES-MFRLGRPVL 357 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~-~~~~grPVL 357 (711)
+.. .+..+...|....+..+.. ....+..+|
T Consensus 245 i~q------------------------------------------------~v~v~~e~Kl~~lv~~L~~ll~e~g~~vL 276 (844)
T TIGR02621 245 IVK------------------------------------------------LVPPSDEKFLSTMVKELNLLMKDSGGAIL 276 (844)
T ss_pred eEE------------------------------------------------EEecChHHHHHHHHHHHHHHHhhCCCcEE
Confidence 100 0111223344333333322 235678999
Q ss_pred EEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH----HHHH--hc----CC-----C-ccEEEEcCCCcCCccee
Q 005155 358 VGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA----ETVA--QA----GR-----K-YAITISTNMAGRGTDII 420 (711)
Q Consensus 358 V~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea----~Iia--~A----G~-----~-G~VTIATnmAGRGTDIk 420 (711)
|||+|++.++.+++.|++.++ ..||+++.+.+|+. .+.. +. |. . ..|.|||+.++||+||.
T Consensus 277 VF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId 353 (844)
T TIGR02621 277 VFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNIS 353 (844)
T ss_pred EEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCC
Confidence 999999999999999999988 88999987777773 2222 11 32 1 36999999999999996
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.85 E-value=2e-19 Score=210.43 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.+||+|..+...+.+|+ |+.+.||+|||+++.+|++-....|.++.+++|...||.+-++.+..+. .+|++|+...+
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G 100 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIG 100 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 47899999999999887 9999999999999999987444568889999999999999999998854 58999999888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
+.+...+. .-.+||+++|+..+ |.+..+ . ..... ++.++||||+|.+. |+.+
T Consensus 101 ~~~~~~~~-~~~~dIiv~Tpek~--~~l~~~---~--~~~l~---~v~lvViDEaH~l~-d~~r 152 (674)
T PRK01172 101 DYDDPPDF-IKRYDVVILTSEKA--DSLIHH---D--PYIIN---DVGLIVADEIHIIG-DEDR 152 (674)
T ss_pred CCCCChhh-hccCCEEEECHHHH--HHHHhC---C--hhHHh---hcCEEEEecchhcc-CCCc
Confidence 76543222 23579999999875 333211 1 12244 79999999999874 5443
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=1.6e-19 Score=204.72 Aligned_cols=293 Identities=15% Similarity=0.091 Sum_probs=168.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..++..+++++ |+.+.||.|||+++.+.+....-.++ .|.|++|+..|+.|-.+.+..+...-...++.+.
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 68999999988777655 99999999999986654321111334 8999999999999988888776654445555555
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccc
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVAR 158 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~ 158 (711)
++... ...++|+++|+..+. ++.+ .... .+.++||||||.+.-+
T Consensus 194 ~g~~~-----~~~~~I~VaT~qsl~-~~~~---------~~~~---~~~~iIvDEaH~~~~~------------------ 237 (501)
T PHA02558 194 SGTAK-----DTDAPIVVSTWQSAV-KQPK---------EWFD---QFGMVIVDECHLFTGK------------------ 237 (501)
T ss_pred cCccc-----CCCCCEEEeeHHHHh-hchh---------hhcc---ccCEEEEEchhcccch------------------
Confidence 55432 135799999997762 1111 1234 7999999999998521
Q ss_pred hHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 159 YPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 159 y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
....++..+... .| .+-||.- +.+.. .+... + ..+|. +.-|.+
T Consensus 238 --~~~~il~~~~~~-~~-------~lGLTAT-------------p~~~~---~~~~~--~--~~~fG-~i~~~v------ 280 (501)
T PHA02558 238 --SLTSIITKLDNC-KF-------KFGLTGS-------------LRDGK---ANILQ--Y--VGLFG-DIFKPV------ 280 (501)
T ss_pred --hHHHHHHhhhcc-ce-------EEEEecc-------------CCCcc---ccHHH--H--HHhhC-CceEEe------
Confidence 223344444210 11 1223320 11100 00000 0 11221 111111
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
.+ .+.+ ++|....++- ..-.+.+.... ...+.
T Consensus 281 -------------~~----~~li--~~g~l~~~~~-~~v~~~~~~~~-----~~~~~----------------------- 312 (501)
T PHA02558 281 -------------TT----SQLM--EEGQVTDLKI-NSIFLRYPDED-----RVKLK----------------------- 312 (501)
T ss_pred -------------cH----HHHH--hCCCcCCceE-EEEeccCCHHH-----hhhhc-----------------------
Confidence 00 1111 2232211110 00000000000 00000
Q ss_pred CCCcccccCCCe--EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHH
Q 005155 319 NLPNIRVDLPIQ--SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAET 396 (711)
Q Consensus 319 ~~p~~R~d~~d~--i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~I 396 (711)
..+.... ...+...+...|++.+....+.|+++||+|.+++.++.|++.|.+.|+++.+++++++..+|++-+
T Consensus 313 -----~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 313 -----GEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred -----ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 0000000 012234455567777766667899999999999999999999999999999999987777777433
Q ss_pred HHhcCCCccEEEEc-CCCcCCccee
Q 005155 397 VAQAGRKYAITIST-NMAGRGTDII 420 (711)
Q Consensus 397 ia~AG~~G~VTIAT-nmAGRGTDIk 420 (711)
-........|.||| +++|||.||.
T Consensus 388 ~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 388 KIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHhCCCCeEEEEEcceeccccccc
Confidence 33223355799999 9999999994
No 61
>PRK14701 reverse gyrase; Provisional
Probab=99.84 E-value=1.8e-19 Score=224.94 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=102.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcC--CeEEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG--LSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG--Ltv~~i 77 (711)
.|+++|..+++.+++|+ ++.|.||+|||+.+.+++...+..|..+.||+|+..||.|.++.+..+...+| +.+..+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 58999999999999999 99999999999977777766677899999999999999999999999998875 566778
Q ss_pred cCCCCHHHHHhc-----c-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSN-----Y-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~a-----Y-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++++..++... - .+||+|+|++.+ .+++.+ .... .+.++||||||+||
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL-~~~~~~--------l~~~---~i~~iVVDEAD~ml 213 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFL-ARNFPE--------MKHL---KFDFIFVDDVDAFL 213 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchh-HHhHHH--------HhhC---CCCEEEEECceecc
Confidence 888887665432 1 379999999865 333321 1113 79999999999997
No 62
>PRK00254 ski2-like helicase; Provisional
Probab=99.84 E-value=5.6e-19 Score=208.19 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|||+|..+... +++|+ |+.+.||+|||++|.+|+.-..+ .|..+.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~~~g~~v~~~ 101 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-EKLGLRVAMT 101 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-hhcCCEEEEE
Confidence 589999999975 67777 99999999999999999974444 4778999999999999999988874 5689999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++.+...+. .-.+||+++|+..+ ..+++.+ ....+ .+.++||||+|.+.
T Consensus 102 ~Gd~~~~~~~-~~~~~IiV~Tpe~~-~~ll~~~------~~~l~---~l~lvViDE~H~l~ 151 (720)
T PRK00254 102 TGDYDSTDEW-LGKYDIIIATAEKF-DSLLRHG------SSWIK---DVKLVVADEIHLIG 151 (720)
T ss_pred eCCCCCchhh-hccCCEEEEcHHHH-HHHHhCC------chhhh---cCCEEEEcCcCccC
Confidence 9987654332 23579999999876 2233321 12234 79999999999874
No 63
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=190.06 Aligned_cols=274 Identities=17% Similarity=0.252 Sum_probs=200.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|-|+|.-++++.+.|+ +|..+.|.|||-++.+|.+ ..+.-+ +..|+.|+++||-+-+.-+..+-+.+|+.|.
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~L-ekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vm 185 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVL-EKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVM 185 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhh-hhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEE
Confidence 79999999999999999 9999999999999999996 666433 6889999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+|+.+ .+.-|..-..++++|||++. .|...... -.+. .+..+|+||||.+|.-+
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRI-lDL~~KgV------a~ls---~c~~lV~DEADKlLs~~------------ 243 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRI-LDLAKKGV------ADLS---DCVILVMDEADKLLSVD------------ 243 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhH-HHHHhccc------ccch---hceEEEechhhhhhchh------------
Confidence 9999866 33344445569999999997 44433222 2344 78899999999998333
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-+.+.+++..|++ +++++ |||++.|+ .|.+- .-+++ + .-|.|
T Consensus 244 ----F~~~~e~li~~lP~---------~rQil-----------------lySATFP~--tVk~F-m~~~l-~--kPy~I- 286 (459)
T KOG0326|consen 244 ----FQPIVEKLISFLPK---------ERQIL-----------------LYSATFPL--TVKGF-MDRHL-K--KPYEI- 286 (459)
T ss_pred ----hhhHHHHHHHhCCc---------cceee-----------------EEecccch--hHHHH-HHHhc-c--Cccee-
Confidence 34578888888864 78888 89988642 22221 12222 1 23443
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
-++|| .|+.-||.
T Consensus 287 ----NLM~e-------------------------------Ltl~GvtQ-------------------------------- 299 (459)
T KOG0326|consen 287 ----NLMEE-------------------------------LTLKGVTQ-------------------------------- 299 (459)
T ss_pred ----ehhhh-------------------------------hhhcchhh--------------------------------
Confidence 12222 11111210
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhH
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~E 393 (711)
-.-|+++.+|..-+-....+. .-+ ..+|||+|++.+|.|++...+.|.+|-.+||+|.|..|.
T Consensus 300 ---------------yYafV~e~qKvhCLntLfskL-qIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRN 362 (459)
T KOG0326|consen 300 ---------------YYAFVEERQKVHCLNTLFSKL-QIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRN 362 (459)
T ss_pred ---------------heeeechhhhhhhHHHHHHHh-ccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhh
Confidence 123788888888765444433 333 457999999999999999999999999999987665555
Q ss_pred HHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 394 AETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 394 a~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.-.-. +-| .-+..|||++.-||+||.
T Consensus 363 rVFHdFr~G-~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 363 RVFHDFRNG-KCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhhhhhcc-ccceeeehhhhhcccccc
Confidence 44333 445 457889999999999995
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=3.6e-18 Score=209.05 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+++|..+++.+++|+ ++.+.||+|||+.+.+++...+..|..+.|++|++.||.|.++.+..+...+|+.+.++.+
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 69999999999999998 8999999999974443333344568899999999999999999999999999999887776
Q ss_pred CCC--HHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMI--PEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~--~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+ ..++... -.+||+++|++.+ .+++. ..... .++++||||||+||
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL-----~~~~~----~l~~~---~~~~lVvDEaD~~L 214 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFL-----SKNFD----ELPKK---KFDFVFVDDVDAVL 214 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHH-----HHHHH----hcccc---ccCEEEEEChHHhh
Confidence 532 2232221 2479999999876 33332 11122 69999999999997
No 65
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.81 E-value=1.9e-19 Score=200.99 Aligned_cols=283 Identities=19% Similarity=0.199 Sum_probs=196.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~-~LGLtv 74 (711)
+|.+||+.++++.+-|. |+|.+.|.||||+|...++ ..|.- -+..||||++++|.|..+.+..+.. |-|+.|
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av-~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAV-ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeee-hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 69999999999999877 9999999999999998886 66643 3678999999999999999999985 679999
Q ss_pred EEEcCCCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 75 GLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 75 ~~i~~~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
.+..||.+ ...+...-+|.|++||||++. .|-.+= .+... ++++.|+||||..+ |+.
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~--qL~el~-----~~n~s---~vrlfVLDEADkL~-~t~----------- 183 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIA--QLVELG-----AMNMS---HVRLFVLDEADKLM-DTE----------- 183 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHH--HHHHhc-----CCCcc---ceeEEEeccHHhhh-chh-----------
Confidence 99999987 556777788999999999973 222111 12233 88999999999986 531
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.+-..++.|+..|+. .||+. -|+++ +++.+.++| + .+| +|.-.|=-
T Consensus 184 ---sfq~~In~ii~slP~---------~rQv~-----------------a~SAT--Yp~nLdn~L-s-k~m-rdp~lVr~ 229 (980)
T KOG4284|consen 184 ---SFQDDINIIINSLPQ---------IRQVA-----------------AFSAT--YPRNLDNLL-S-KFM-RDPALVRF 229 (980)
T ss_pred ---hHHHHHHHHHHhcch---------hheee-----------------EEecc--CchhHHHHH-H-HHh-cccceeec
Confidence 245678889999964 67776 56766 357788887 3 333 34322211
Q ss_pred C-CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 234 N-GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 234 d-~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
+ +.++++ |+.|++-
T Consensus 230 n~~d~~L~---------------GikQyv~-------------------------------------------------- 244 (980)
T KOG4284|consen 230 NADDVQLF---------------GIKQYVV-------------------------------------------------- 244 (980)
T ss_pred ccCCceee---------------chhheee--------------------------------------------------
Confidence 1 001110 3333322
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.+|+.-- ....|.-+-+++..|...|-- -..||||.++-.++.++..|+..|+++..+.+.|.|.+|
T Consensus 245 --~~~s~nn------sveemrlklq~L~~vf~~ipy-----~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 245 --AKCSPNN------SVEEMRLKLQKLTHVFKSIPY-----VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDR 311 (980)
T ss_pred --eccCCcc------hHHHHHHHHHHHHHHHhhCch-----HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHH
Confidence 2222000 000111122233333333311 125999999999999999999999999999998877666
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
--.+-. ++. .-+|+|||++..||+|-.
T Consensus 312 l~a~~~lr~f-~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 312 LLAVDQLRAF-RVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHhhhc-eEEEEEecchhhccCCcc
Confidence 544433 333 558999999999999973
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=7.7e-18 Score=181.71 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEEeCCCcchHhHH---HHHH--hcCCCccEEEEcCCCcCCcce
Q 005155 347 ESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREA---ETVA--QAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 347 ~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~--~~vLnA~~~~~~~Ea---~Iia--~AG~~G~VTIATnmAGRGTDI 419 (711)
......++++||||++++.++.+++.|++.+.+ +..+|++..+.+|+. +++. +.| ...|.|||+.++||+||
T Consensus 216 ~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT~~~~~GiDi 294 (358)
T TIGR01587 216 LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVATQVIEASLDI 294 (358)
T ss_pred HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEECcchhceecc
Confidence 344467899999999999999999999998774 788999866666653 2343 333 44699999999999999
Q ss_pred e
Q 005155 420 I 420 (711)
Q Consensus 420 k 420 (711)
.
T Consensus 295 ~ 295 (358)
T TIGR01587 295 S 295 (358)
T ss_pred C
Confidence 5
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.79 E-value=2.3e-17 Score=202.24 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE---
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL-NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG--- 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l-~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~--- 75 (711)
.|+++|..+++.++.|+ ++.+.||+|||+ |++|+.. .+..|..|.|++|+++||.|.++.+..+...+|+.+.
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 69999999999999999 999999999997 5555543 3446889999999999999999999999999998754
Q ss_pred EEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.++++..++... -.+||++||++.+ .+++.. ... .++++||||||+||
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL-----~~~~~~-----l~~---~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFL-----SKNYDE-----LGP---KFDFIFVDDVDALL 212 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----HHHHHH-----hcC---CCCEEEEeChHhhh
Confidence 46788887665322 2379999999865 343321 111 68999999999997
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=4.8e-17 Score=192.94 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=95.4
Q ss_pred CchhHHHHHH-HHhCCCeEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 3 HFDVQIIGGA-VLHDGSIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 3 p~dvQl~g~~-~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
|.+-|..... ++.++-|+.+.||.|||+++.+++. +.+. +..|.|++|+..|+.+.++.+..++...+..+..+.+
T Consensus 16 ~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~-~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g 94 (773)
T PRK13766 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIA-ERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTG 94 (773)
T ss_pred ccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 4555655544 4444559999999999999988886 4444 6789999999999999888888776555558888889
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.++.+|...| .++|+++|+.-+..|.+...+ ... .+.++||||||.+.
T Consensus 95 ~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~-------~~~---~~~liVvDEaH~~~ 144 (773)
T PRK13766 95 EVSPEKRAELWEKAKVIVATPQVIENDLIAGRI-------SLE---DVSLLIFDEAHRAV 144 (773)
T ss_pred CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCC-------Chh---hCcEEEEECCcccc
Confidence 88888887777 579999999877555543322 223 78999999999763
No 69
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.77 E-value=4.4e-17 Score=193.60 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH-HhhhcCCeEEEEcCCCCHHH
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER-VHRFLGLSVGLIQRGMIPEE 85 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~-~y~~LGLtv~~i~~~~~~~~ 85 (711)
|++-.+.=++--|++..||+|||..+.+|++-....+.+|.|+.|++.+|.+-++.+.. +...+|.+||......+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 44444433344499999999999999999874434566899999999999999999864 44577888887665422
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
+..-..+|+|+|++.| .+. +... ..+. ++.++||||||...+|
T Consensus 86 -~~s~~t~I~v~T~G~L-lr~----l~~d---~~L~---~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGIL-TRM----IQDD---PELD---GVGALIFDEFHERSLD 128 (819)
T ss_pred -ccCCCCcEEEECCcHH-HHH----HhhC---cccc---cCCEEEEeccchhhhc
Confidence 1223468999999987 233 3222 2355 8999999999964334
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=5.9e-17 Score=188.83 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH---------HHHHHH--HHHH----cCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV---------STLAAY--LNAL----TGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv---------a~Lpa~--l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
++|.-....+.+|+ |++.+||+|||.+ |++|.+ ++++ .+..|.|++|+.+||.+-++.++...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57888888888888 9999999999976 333332 1222 24589999999999999888888765
Q ss_pred hh---cCCeEEEEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 68 RF---LGLSVGLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 68 ~~---LGLtv~~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.+ -|+++.+..++++.+... ..-..+|+++|+.-. + ..+. ++.++||||||.++.+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l--------~~L~---~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------L--------NKLF---DYGTVIIDEVHEHDQI 306 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------c--------cccc---cCCEEEccccccCccc
Confidence 44 478888889998743221 222579999996421 0 1234 7999999999998644
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=3.7e-17 Score=194.43 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcCCCCHHH
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQRGMIPEE 85 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~~i~~~~~~~~ 85 (711)
|++..+.=++--|++..||+|||.++.+|++-....+.+|.|+.|++.+|.+-++.|...+ ..+|.+||...++.+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-- 89 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-- 89 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc--
Confidence 4444443333349999999999999998886433344579999999999999999986544 5678899987665321
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-..+|+|+|++.| .++|. .. ..+. ++.++||||+|..
T Consensus 90 --~~~~t~I~v~T~G~L-lr~l~----~d---~~L~---~v~~IIlDEaHER 128 (812)
T PRK11664 90 --VGPNTRLEVVTEGIL-TRMIQ----RD---PELS---GVGLVILDEFHER 128 (812)
T ss_pred --cCCCCcEEEEChhHH-HHHHh----hC---CCcC---cCcEEEEcCCCcc
Confidence 122457999999987 33332 21 2345 8999999999974
No 72
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.77 E-value=5.7e-17 Score=200.22 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=84.0
Q ss_pred EecCCCcHHHHHHHHHHHHHHc-------------CCCEEEEecCHHHHHHHHHHHHHHhh------------hcCCeEE
Q 005155 21 EMKTGEGKTLVSTLAAYLNALT-------------GEGVHVVTVNDYLAQRDAEWMERVHR------------FLGLSVG 75 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~-------------G~~VhVvT~NdyLA~RDae~~~~~y~------------~LGLtv~ 75 (711)
...||+|||++|.||++..-+. |..|.+|+|...||.+..+.+...+. .++++|+
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 3579999999999999744332 35699999999999999988765322 3689999
Q ss_pred EEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
..+|+.+..+|+.. -.+||+++||..| +++|... ....++ +++++||||+|.|+
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL-~~LLtsk-----~r~~L~---~Vr~VIVDE~H~L~ 137 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESL-YLMLTSR-----ARETLR---GVETVIIDEVHAVA 137 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHH-HHHHhhh-----hhhhhc---cCCEEEEecHHHhc
Confidence 99999998776543 4679999999988 3444321 112455 89999999999997
No 73
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.8e-17 Score=184.93 Aligned_cols=280 Identities=21% Similarity=0.216 Sum_probs=192.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHh--h
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVH--R 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y--~ 68 (711)
-|.|+|..+++++++++ +|+..||+||||+|.+|++. -|. |-.+.|+.|+++||.|++.+|.++- .
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~-~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ-HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH-HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 38999999999999998 99999999999999999874 443 3468999999999999999999987 4
Q ss_pred hcCCeEEEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCc
Q 005155 69 FLGLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (711)
Q Consensus 69 ~LGLtv~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tP 145 (711)
--++.+........+.++... -.+||..+||.++ ...+...+-..-++ +++++++||+|..+-.
T Consensus 237 ~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri-----~~~~~~~~~~idl~---~V~~lV~dEaD~lfe~----- 303 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI-----VGLLGLGKLNIDLS---KVEWLVVDEADLLFEP----- 303 (593)
T ss_pred CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH-----HHHhcCCCccchhh---eeeeEeechHHhhhCh-----
Confidence 445554433333223222211 2368999999885 44455443334566 8999999999998622
Q ss_pred eeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhc
Q 005155 146 LLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYR 225 (711)
Q Consensus 146 LiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~ 225 (711)
..++.+.+.+.+.+.. ..+. -.+|+++. ..+|..-. ...+.
T Consensus 304 ----------~~f~~Qla~I~sac~s----------~~i~---------------~a~FSat~--~~~VEE~~--~~i~~ 344 (593)
T KOG0344|consen 304 ----------EFFVEQLADIYSACQS----------PDIR---------------VALFSATI--SVYVEEWA--ELIKS 344 (593)
T ss_pred ----------hhHHHHHHHHHHHhcC----------cchh---------------hhhhhccc--cHHHHHHH--HHhhc
Confidence 2366777777776642 1111 12677654 23333221 11110
Q ss_pred cCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHH
Q 005155 226 RDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (711)
Q Consensus 226 ~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef 305 (711)
+. ..+|| |.+-+|
T Consensus 345 -~~-------~~viv----------------------------------------------------g~~~sa------- 357 (593)
T KOG0344|consen 345 -DL-------KRVIV----------------------------------------------------GLRNSA------- 357 (593)
T ss_pred -cc-------eeEEE----------------------------------------------------ecchhH-------
Confidence 10 01111 111111
Q ss_pred HHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEEe
Q 005155 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLN 384 (711)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L-~~~gi~~~vLn 384 (711)
.-+.+...+.-.++..|.-|+.+.|..- -.=|+|||..|++.+..|...| .-.+|...++|
T Consensus 358 ----------------~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 358 ----------------NETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred ----------------hhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 1133333444456788999988888654 4468999999999999999999 78899999999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+...+.++|..+-+ ++| .-.|.|+||+.+||+||+
T Consensus 420 ~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFK 455 (593)
T ss_pred cccchhHHHHHHHHHhcc-CeeEEEehhhhhcccccc
Confidence 98667777777766 555 679999999999999997
No 74
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.76 E-value=5.4e-16 Score=168.22 Aligned_cols=269 Identities=21% Similarity=0.199 Sum_probs=178.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+|+-||--+++..++|+ +|.+.||+|||+++++|++-.-| .|....|+.|+++||+|.+..+.++-.++
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999 99999999999999999973222 24467899999999999999999999998
Q ss_pred C--CeEEEEcCCCCHHHHHh--ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 71 G--LSVGLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 71 G--Ltv~~i~~~~~~~~r~~--aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
+ +.+.-+.++|+...-+. .-..||+++||+.+ -++++...- .... .+.|++|||||=+|.=.
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~l-----l~~~~~~~~-~~~~---~l~~LVvDEADLllsfG----- 186 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKL-----LRHLAAGVL-EYLD---SLSFLVVDEADLLLSFG----- 186 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHH-----HHHHhhccc-hhhh---heeeEEechhhhhhhcc-----
Confidence 7 55566666777554443 34579999999987 333433321 2344 78999999999988321
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
.-..+..+...|++ .-|.+ |.|++ +..-|. +| +.++-.
T Consensus 187 -----------Yeedlk~l~~~LPr---------~~Q~~-----------------LmSAT--l~dDv~-~L--KkL~l~ 224 (569)
T KOG0346|consen 187 -----------YEEDLKKLRSHLPR---------IYQCF-----------------LMSAT--LSDDVQ-AL--KKLFLH 224 (569)
T ss_pred -----------cHHHHHHHHHhCCc---------hhhhe-----------------eehhh--hhhHHH-HH--HHHhcc
Confidence 11234555555543 11112 22322 222222 22 233322
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
|.
T Consensus 225 nP------------------------------------------------------------------------------ 226 (569)
T KOG0346|consen 225 NP------------------------------------------------------------------------------ 226 (569)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHcCCCeEEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 307 KMFQMPVIEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 307 ~iY~l~vv~I--Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
|+.- ...-|..-+-...+|-.++.+|+.-+....+-..=.| .+|||.++|+.+=.|--.|.+-||+.-+||
T Consensus 227 ------viLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLN 299 (569)
T KOG0346|consen 227 ------VILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILN 299 (569)
T ss_pred ------eEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhc
Confidence 1100 0111111112234566778889875555544332233 679999999999999999999999999999
Q ss_pred CCCcchHhHHHHHH--hcCCCccEEEEcCCC
Q 005155 385 ARPKYAAREAETVA--QAGRKYAITISTNMA 413 (711)
Q Consensus 385 A~~~~~~~Ea~Iia--~AG~~G~VTIATnmA 413 (711)
+......| -+||. .+| ...+.|||+--
T Consensus 300 seLP~NSR-~Hii~QFNkG-~YdivIAtD~s 328 (569)
T KOG0346|consen 300 SELPANSR-CHIIEQFNKG-LYDIVIATDDS 328 (569)
T ss_pred ccccccch-hhHHHHhhCc-ceeEEEEccCc
Confidence 97434343 36776 466 67999999865
No 75
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=8.9e-17 Score=176.38 Aligned_cols=129 Identities=26% Similarity=0.307 Sum_probs=102.1
Q ss_pred CCchhHHHHHHHHh---------C-CC-eEEecCCCcHHHHHHHHHHHHHHcCC-----CEEEEecCHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLH---------D-GS-IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~---------~-G~-IaEm~TGEGKTLva~Lpa~l~AL~G~-----~VhVvT~NdyLA~RDae~~~~ 65 (711)
|-||||-+-.+.++ . |. .+-..||+||||+|++|+. ++|..+ ++.||.|+..||-|.+..+..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV-Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV-QLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH-HHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 56999977777663 1 22 6788999999999999996 888777 577999999999999999999
Q ss_pred HhhhcCCeEEEEcCCCC--HHHHHhcc-----CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 66 VHRFLGLSVGLIQRGMI--PEERRSNY-----RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 66 ~y~~LGLtv~~i~~~~~--~~~r~~aY-----~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+...-||.|+...+..+ .+.++.+- ..||+++|||+| .|.| ... ....+. ++.|+||||||+||
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL-VDHl----~~~-k~f~Lk---~LrfLVIDEADRll 308 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL-VDHL----NNT-KSFDLK---HLRFLVIDEADRLL 308 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH-HHhc----cCC-CCcchh---hceEEEechHHHHH
Confidence 99999999988776543 55666542 249999999998 4444 432 234555 89999999999997
Q ss_pred hhc
Q 005155 139 IDE 141 (711)
Q Consensus 139 iDe 141 (711)
|.
T Consensus 309 -~q 310 (620)
T KOG0350|consen 309 -DQ 310 (620)
T ss_pred -HH
Confidence 65
No 76
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=5.1e-17 Score=175.41 Aligned_cols=279 Identities=18% Similarity=0.185 Sum_probs=203.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|+|--.++.+++|+ ++-..||+|||.+|+||++ .+|.+ -...|+.||++||.+-..-...+.++.++.+
T Consensus 43 ~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~-e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMI-EKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCchhcccccceeeccccceeeecCCcchhhHHHHHH-HHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 49999999999999999 8888999999999999998 56643 3799999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
++++++-+.+++-..- +.||+.+||+++- ++.-. -.+.++ ...|++.||+|+++ .++
T Consensus 122 s~~~ggD~~eeqf~~l~~npDii~ATpgr~~------h~~ve-m~l~l~---sveyVVfdEadrlf-emg---------- 180 (529)
T KOG0337|consen 122 SLLVGGDSIEEQFILLNENPDIIIATPGRLL------HLGVE-MTLTLS---SVEYVVFDEADRLF-EMG---------- 180 (529)
T ss_pred hhhcccchHHHHHHHhccCCCEEEecCceee------eeehh-eecccc---ceeeeeehhhhHHH-hhh----------
Confidence 9999987776665544 5899999999972 11111 013455 89999999999997 333
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCc--hHHHHHHHHHHHHHhccCcce
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDP--WARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~--~~~~i~~AL~A~~l~~~d~dY 230 (711)
+-++..+++..++. +++.. +||++-+ +....+ .-+...+
T Consensus 181 -----fqeql~e~l~rl~~---------~~QTl-----------------lfSatlp~~lv~fak------aGl~~p~-- 221 (529)
T KOG0337|consen 181 -----FQEQLHEILSRLPE---------SRQTL-----------------LFSATLPRDLVDFAK------AGLVPPV-- 221 (529)
T ss_pred -----hHHHHHHHHHhCCC---------cceEE-----------------EEeccCchhhHHHHH------ccCCCCc--
Confidence 33578888888864 45555 7887753 222222 1111110
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~ 310 (711)
.|=+|. |+...... .
T Consensus 222 ------lVRldv-----------------------------etkise~l------------------------------k 236 (529)
T KOG0337|consen 222 ------LVRLDV-----------------------------ETKISELL------------------------------K 236 (529)
T ss_pred ------eEEeeh-----------------------------hhhcchhh------------------------------h
Confidence 000111 11110000 0
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
+. ....-.++|..++...+.... .....+||+.+...+|.+...|...|+.+..+.+.+.++
T Consensus 237 ~~-----------------f~~~~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 237 VR-----------------FFRVRKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQE 298 (529)
T ss_pred hh-----------------eeeeccHHHHHHHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChH
Confidence 00 112345678877765554332 244789999999999999999999999999998877777
Q ss_pred HhHHHHHHhcCCCccEEEEcCCCcCCcceecCCC
Q 005155 391 AREAETVAQAGRKYAITISTNMAGRGTDIILGGN 424 (711)
Q Consensus 391 ~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~ 424 (711)
+|-..+-..-+.++.+.|.|+.|.||.||.++.|
T Consensus 299 aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 299 ARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 7777787777779999999999999999999865
No 77
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=99.72 E-value=1.7e-17 Score=168.74 Aligned_cols=79 Identities=35% Similarity=0.568 Sum_probs=74.5
Q ss_pred cccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 625 ~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++|+++|+.+.++
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~~~~ 78 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG--EDLEEIILEMIEDVIDDIVDEYIPE 78 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SCCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHccc
Confidence 89999999999999999999999999999999999999999999999999965 5799999999999999999998876
Q ss_pred c
Q 005155 705 L 705 (711)
Q Consensus 705 ~ 705 (711)
.
T Consensus 79 ~ 79 (214)
T PF07516_consen 79 K 79 (214)
T ss_dssp S
T ss_pred c
Confidence 5
No 78
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2.1e-16 Score=168.65 Aligned_cols=278 Identities=18% Similarity=0.266 Sum_probs=188.5
Q ss_pred CCchhHHHHHHHHh----CCCeEEecCCCcHHHHHHHHHHHH---HHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLH----DGSIAEMKTGEGKTLVSTLAAYLN---ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~----~G~IaEm~TGEGKTLva~Lpa~l~---AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+|..+|-.+.+.|+ ++-|||.+.|+|||.+|+|..+.. .+.-.++.++.|+++||.+--+-+....+|.+++.
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 78899999999885 566999999999999999988643 23456889999999999998888777777779999
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
..+..+. ...|-.--..+|+.||++-+ .||.+..- -.... ...+.++||||+|+--.++.
T Consensus 192 ~yair~s-k~~rG~~i~eqIviGTPGtv-~Dlm~klk-----~id~~---kikvfVlDEAD~Mi~tqG~~---------- 251 (477)
T KOG0332|consen 192 SYAIRGS-KAKRGNKLTEQIVIGTPGTV-LDLMLKLK-----CIDLE---KIKVFVLDEADVMIDTQGFQ---------- 251 (477)
T ss_pred EEEecCc-ccccCCcchhheeeCCCccH-HHHHHHHH-----hhChh---hceEEEecchhhhhhccccc----------
Confidence 9888775 22233334568999999998 56554311 11233 78899999999997333221
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.++-.+...++ .+.|+. |||++. .+-+.+ + |.. +|+|
T Consensus 252 -----D~S~rI~~~lP---------~~~Qll-----------------LFSATf--~e~V~~-F-a~k--------ivpn 288 (477)
T KOG0332|consen 252 -----DQSIRIMRSLP---------RNQQLL-----------------LFSATF--VEKVAA-F-ALK--------IVPN 288 (477)
T ss_pred -----ccchhhhhhcC---------CcceEE-----------------eeechh--HHHHHH-H-HHH--------hcCC
Confidence 12233444443 244555 688762 333321 1 112 2223
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
-.++++- .|-+++.. +|.+-|
T Consensus 289 ~n~i~Lk-----------------------------~eel~L~~-----------------------------IkQlyv- 309 (477)
T KOG0332|consen 289 ANVIILK-----------------------------REELALDN-----------------------------IKQLYV- 309 (477)
T ss_pred Cceeeee-----------------------------hhhccccc-----------------------------hhhhee-
Confidence 2222221 11122222 222211
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
.-..+++|+.+|++ +-....-||. +|||.+...+++|+..|.+.|-...+||+++.-.+|.+
T Consensus 310 ----------------~C~~~~~K~~~l~~-lyg~~tigqs-iIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 310 ----------------LCACRDDKYQALVN-LYGLLTIGQS-IIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred ----------------eccchhhHHHHHHH-HHhhhhhhhe-EEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHH
Confidence 12457889999987 5555566665 68999999999999999999999999999864444444
Q ss_pred HHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 395 ETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 395 ~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
-|.. +.| ...|.|+||...||+|+.
T Consensus 372 ii~~Fr~g-~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 372 IIDRFREG-KEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHhcC-cceEEEEechhhcccccc
Confidence 4443 566 668999999999999996
No 79
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.5e-16 Score=168.92 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=196.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHH---HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~A---L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+|-.+|--|++...+|+ +++.++|.|||.+|++++.... ..-..|.++.|+++||+|+.+.+..+....+.+|..
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 58899999999999999 9999999999999999886331 123578899999999999999999999999999997
Q ss_pred EcCCCC---HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 77 IQRGMI---PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 77 i~~~~~---~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
..++.+ ...+...-.+.||.||+++. +|.|.-+ .+.++ +....++||+|-||...
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV-~dml~~~------~l~~~---~iKmfvlDEaDEmLs~g------------ 185 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRV-FDMLNRG------SLSTD---GIKMFVLDEADEMLSRG------------ 185 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhH-HHhhccc------ccccc---ceeEEeecchHhhhccc------------
Confidence 777654 22334445679999999998 6666432 23344 89999999999999665
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-.++..+.+.++++. ++. |++++. +.|+... ++.+++.-+
T Consensus 186 ----fkdqI~~if~~lp~~v---------Qv~-----------------l~SAT~--p~~vl~v--t~~f~~~pv----- 226 (397)
T KOG0327|consen 186 ----FKDQIYDIFQELPSDV---------QVV-----------------LLSATM--PSDVLEV--TKKFMREPV----- 226 (397)
T ss_pred ----hHHHHHHHHHHcCcch---------hhe-----------------eecccC--cHHHHHH--HHHhccCce-----
Confidence 3346777777886532 333 677775 3344332 345543211
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
.|.. +.+.+|+.-|..
T Consensus 227 -----~i~v---------------------------kk~~ltl~gikq-------------------------------- 242 (397)
T KOG0327|consen 227 -----RILV---------------------------KKDELTLEGIKQ-------------------------------- 242 (397)
T ss_pred -----EEEe---------------------------cchhhhhhheee--------------------------------
Confidence 1110 001122222211
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhH
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~E 393 (711)
+| +...+++|+.-+++... .-+..+|||++.+.+..+...|..+|.....+|+++.+.+|+
T Consensus 243 --~~-------------i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 243 --FY-------------INVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred --ee-------------eeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhh
Confidence 01 11223336665554443 445779999999999999999999999999999998888888
Q ss_pred HHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 394 AETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 394 a~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
-....--.-..+|.|.|+.+.||.||.
T Consensus 304 ~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 304 TLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred HHHHHhhcCCceEEeeccccccccchh
Confidence 776664444889999999999999994
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.71 E-value=2.4e-15 Score=163.95 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhc----CCeEEEEc
Q 005155 7 QIIGGAVLHDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL----GLSVGLIQ 78 (711)
Q Consensus 7 Ql~g~~~L~~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L----GLtv~~i~ 78 (711)
|..+.-++.+|. ++.+.||+|||+++.+|+.. .+..+.+++|+..|+.+.++.+..++..+ ++.+....
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 666677777765 67899999999999999862 45578899999999999999999988755 66777766
Q ss_pred CCCCHHHH--------------------Hhc--cCCCeEEECCCchhhHHHHHhhhcchh---hhhcCCCCCccEEEeec
Q 005155 79 RGMIPEER--------------------RSN--YRCDITYTNNSELGFDYLRDNLAANSE---QLVMRWPKPFHFAIVDE 133 (711)
Q Consensus 79 ~~~~~~~r--------------------~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~---~~v~r~~R~~~~aIVDE 133 (711)
+....+.+ ... -..+| ..||.++ |++|..+....+. ...+. .+.++|+||
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~i-llT~p~~-l~~llr~~~~~~~~~~~~~~~---~~~~iV~DE 153 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPII-LLTNPDI-FVYLTRFAYIDRGDIAAGFYT---KFSTVIFDE 153 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCE-EEecHHH-HHHHHhhhccCcccchhhhhc---CCCEEEEec
Confidence 65332211 111 13344 4666665 5665433221111 11234 789999999
Q ss_pred hhhh
Q 005155 134 VDSV 137 (711)
Q Consensus 134 vDs~ 137 (711)
+|..
T Consensus 154 ~H~~ 157 (357)
T TIGR03158 154 FHLY 157 (357)
T ss_pred cccc
Confidence 9984
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.70 E-value=2.4e-15 Score=176.78 Aligned_cols=279 Identities=20% Similarity=0.234 Sum_probs=184.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEE--EecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHV--VTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhV--vT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+|+|..+.+.+++|+ +.-..||+|||++|.||++ +.|... +|++ |||=..|+...-..+....+.+
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil-~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI-NELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHH-HHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999 9999999999999999997 666322 3666 5666788887777788888899
Q ss_pred CCeEEEEcCCCCHHHHHhccC--CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r~~aY~--~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+.|.+-.|++++.+|+..-. .||+..||..|+.-..-.+ -...++ ++.|+||||+|.+...+.-.
T Consensus 101 G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~-----~r~~l~---~vr~VIVDEiHel~~sKRG~---- 168 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPK-----FRELLR---DVRYVIVDEIHALAESKRGV---- 168 (814)
T ss_pred CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHH-----HHHHhc---CCcEEEeehhhhhhccccch----
Confidence 999999999998877776543 5999999999854322221 123556 89999999999985222110
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
.++-...+ ...+-
T Consensus 169 --------~Lsl~LeR-------------------------------------------------------L~~l~---- 181 (814)
T COG1201 169 --------QLALSLER-------------------------------------------------------LRELA---- 181 (814)
T ss_pred --------hhhhhHHH-------------------------------------------------------HHhhC----
Confidence 00000000 00100
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH--HHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE--KEFL 306 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~--~Ef~ 306 (711)
| .+| --|+|+|.++.. ..|.
T Consensus 182 ----------------~----------------------------------~~q--------RIGLSATV~~~~~varfL 203 (814)
T COG1201 182 ----------------G----------------------------------DFQ--------RIGLSATVGPPEEVAKFL 203 (814)
T ss_pred ----------------c----------------------------------ccE--------EEeehhccCCHHHHHHHh
Confidence 0 000 126666666432 2333
Q ss_pred HHcC--CCeEEeCCCCCc-ccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCC-CCeEE
Q 005155 307 KMFQ--MPVIEVPTNLPN-IRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG-IPHNV 382 (711)
Q Consensus 307 ~iY~--l~vv~IPt~~p~-~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~g-i~~~v 382 (711)
--++ ..++.++-.++. .+.-.|..-......-|.++++.|.+..++.+.+||||+|...+|.++..|++.+ ++..+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 3333 122333333322 1111111111111456677778888877888899999999999999999999987 88888
Q ss_pred EeCCCc-chHhHHHHHHhcCCCccEEEEcCCCcCCcce
Q 005155 383 LNARPK-YAAREAETVAQAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 383 LnA~~~-~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDI 419 (711)
.|+... ....+++=--+.|. -.+.|||.-.--|+||
T Consensus 284 HHgSlSre~R~~vE~~lk~G~-lravV~TSSLELGIDi 320 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE-LKAVVATSSLELGIDI 320 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC-ceEEEEccchhhcccc
Confidence 887422 22233444446675 5677999999999999
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.66 E-value=2.7e-14 Score=170.63 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCC---CCeEEEeCCCcchHh---HHHHHHh---cCCC--ccEEE
Q 005155 340 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAR---EAETVAQ---AGRK--YAITI 408 (711)
Q Consensus 340 ~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~g---i~~~vLnA~~~~~~~---Ea~Iia~---AG~~--G~VTI 408 (711)
.++++.+.+..+.|.+|||||+|++.++.+++.|++.+ .++.++|++.....| |.++++. .|+. +.|.|
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 35666676666789999999999999999999999875 678899997544444 4456553 3432 67999
Q ss_pred EcCCCcCCcceec
Q 005155 409 STNMAGRGTDIIL 421 (711)
Q Consensus 409 ATnmAGRGTDIkL 421 (711)
||+.+.||+||..
T Consensus 627 aTQViE~GLDId~ 639 (878)
T PRK09694 627 ATQVVEQSLDLDF 639 (878)
T ss_pred ECcchhheeecCC
Confidence 9999999999954
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=1.1e-14 Score=166.34 Aligned_cols=244 Identities=21% Similarity=0.272 Sum_probs=173.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RC 92 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~ 92 (711)
+.|=.-|+|||+||+++++...-.|.+|-++.||+-||+|-++.+.+++.-+||+|++.+|.+....|++.. ..
T Consensus 287 LlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~ 366 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEI 366 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCC
Confidence 444457999999999999977779999999999999999999999999999999999999999988887665 36
Q ss_pred CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccC
Q 005155 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (711)
Q Consensus 93 DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~ 172 (711)
||++||..=| .|... .. ++.++||||-|++=.-.
T Consensus 367 ~ivVGTHALi-----Qd~V~-------F~---~LgLVIiDEQHRFGV~Q------------------------------- 400 (677)
T COG1200 367 DIVVGTHALI-----QDKVE-------FH---NLGLVIIDEQHRFGVHQ------------------------------- 400 (677)
T ss_pred CEEEEcchhh-----hccee-------ec---ceeEEEEeccccccHHH-------------------------------
Confidence 9999999765 34322 33 78999999999862110
Q ss_pred CCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccc
Q 005155 173 LHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRR 252 (711)
Q Consensus 173 ~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ 252 (711)
+.+|++ ++..
T Consensus 401 ------------------------------------------R~~L~~-----KG~~----------------------- 410 (677)
T COG1200 401 ------------------------------------------RLALRE-----KGEQ----------------------- 410 (677)
T ss_pred ------------------------------------------HHHHHH-----hCCC-----------------------
Confidence 011111 1100
Q ss_pred cChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC-CCeEE---eCCCCCcccccCC
Q 005155 253 WSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ-MPVIE---VPTNLPNIRVDLP 328 (711)
Q Consensus 253 ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~-l~vv~---IPt~~p~~R~d~~ 328 (711)
|+.+.-||+|-=. +.--...|| |+|-. .|+- |+.-.
T Consensus 411 -----------------------------------~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~G----RkpI~ 450 (677)
T COG1200 411 -----------------------------------NPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPG----RKPIT 450 (677)
T ss_pred -----------------------------------CCcEEEEeCCCch-HHHHHHHhccccchhhccCCCC----CCceE
Confidence 2334446665432 111234554 56544 3554 33222
Q ss_pred CeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH--------HHHHHHHC--CCCeEEEeCCCcchHhHHHHHH
Q 005155 329 IQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY--------LSDLLKQQ--GIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 329 d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~--------Ls~~L~~~--gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
..+.. .++...+++.|.+...+||.+-++|+=|++||. +++.|+.. +....++|++++.+++++.+-+
T Consensus 451 T~~i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~ 528 (677)
T COG1200 451 TVVIP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEA 528 (677)
T ss_pred EEEec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHH
Confidence 33332 345556677777777899999999999999873 45666643 4567899999999888888877
Q ss_pred hcCCCccEEEEcCCCcCCccee
Q 005155 399 QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIk 420 (711)
..-....|.|||..--=|+|+.
T Consensus 529 Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 529 FKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HHcCCCcEEEEeeEEEecccCC
Confidence 4444889999999988888874
No 84
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.62 E-value=2.6e-14 Score=159.13 Aligned_cols=271 Identities=23% Similarity=0.282 Sum_probs=193.1
Q ss_pred chhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 4 FDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 4 ~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|||.+++=+ |++|. ++-..|++||||+.-|+-.-++|. |++-..++|=-.||.|-+++|..=|.-||++|++-+|
T Consensus 218 lPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG 297 (830)
T COG1202 218 LPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVG 297 (830)
T ss_pred cchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEec
Confidence 5899998875 77887 888999999999999999989998 7889999999999999999999999999999987665
Q ss_pred CCCHHHHH------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERR------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
-.-...+. -.-.|||++||-. |+|||..- ...+. ....++|||+|.+ -|+-|-|
T Consensus 298 ~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lLRt------g~~lg---diGtVVIDEiHtL-~deERG~-------- 357 (830)
T COG1202 298 MSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLLRT------GKDLG---DIGTVVIDEIHTL-EDEERGP-------- 357 (830)
T ss_pred hhhhcccCCccccCCCCCCcEEEeech--hHHHHHHc------CCccc---ccceEEeeeeeec-cchhccc--------
Confidence 32221111 1246899999986 68998531 12333 7889999999985 4554433
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.++-++..| +++|. +
T Consensus 358 -------RLdGLI~RL---------------------------------------------------r~l~~-~------ 372 (830)
T COG1202 358 -------RLDGLIGRL---------------------------------------------------RYLFP-G------ 372 (830)
T ss_pred -------chhhHHHHH---------------------------------------------------HHhCC-C------
Confidence 222222222 22221 0
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
..+.|+|+|.|+. +|+.+..|+..
T Consensus 373 -------------------------------------------------------AQ~i~LSATVgNp-~elA~~l~a~l 396 (830)
T COG1202 373 -------------------------------------------------------AQFIYLSATVGNP-EELAKKLGAKL 396 (830)
T ss_pred -------------------------------------------------------CeEEEEEeecCCh-HHHHHHhCCee
Confidence 0134677777763 34555566654
Q ss_pred EEeCCCCCc--ccccCCCeEEeC-hhHHHHHHHHHHHHhh----hcC--CcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 314 IEVPTNLPN--IRVDLPIQSFAT-ARGKWEYARQEVESMF----RLG--RPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 314 v~IPt~~p~--~R~d~~d~i~~t-~~~K~~aIi~ei~~~~----~~g--rPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
|.- -++|+ -| ..+|.. +.+||+-|.+.+++-. .+| -..+|||.|-..++.|+..|..+|++..--|
T Consensus 397 V~y-~~RPVplEr----Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYH 471 (830)
T COG1202 397 VLY-DERPVPLER----HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYH 471 (830)
T ss_pred Eee-cCCCCChhH----eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccccccc
Confidence 422 12332 22 456665 8899998877776543 222 2489999999999999999999999999999
Q ss_pred CCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+..+.+|-..-.+.|-+.-++.|.|.-.|=|+|+.
T Consensus 472 aGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 472 AGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred CCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 987776554333334445668889999999999996
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=8.6e-14 Score=162.83 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred EeChhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 332 FATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+..+..|+.++...+ +.| ..|.++||||.++..++.++..| |. .+|++++.+.+|+.-+-. +.|..-.+.|+
T Consensus 475 ~~~np~K~~~~~~Li-~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 475 YVMNPNKFRACQFLI-RFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhChHHHHHHHHHH-HHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 445667888765444 445 47899999999999999999887 33 468888777777765555 34545588999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+.+++|+|+.
T Consensus 549 SkVgdeGIDlP 559 (732)
T TIGR00603 549 SKVGDTSIDLP 559 (732)
T ss_pred ecccccccCCC
Confidence 99999999995
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.59 E-value=4.6e-13 Score=157.33 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=91.7
Q ss_pred CchhHHHHHHHHhCC---C--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 3 HFDVQIIGGAVLHDG---S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 3 p~dvQl~g~~~L~~G---~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
+++.|.-+.-.+.++ + ++.+.||+|||.+++.++.-....|++|.|++|+..||.|-.+.+.. .||.+++.+
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~---~fg~~v~~~ 221 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRA---RFGAPVAVL 221 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCCEEEE
Confidence 577888777777653 2 89999999999999887653233589999999999999998887765 458999999
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+++++.+|...+ .++|++||.+.+ | .-.+ ++.++||||+|...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~-------------~p~~---~l~liVvDEeh~~s 271 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSAL-F-------------LPFK---NLGLIIVDEEHDSS 271 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-c-------------cccc---CCCEEEEECCCccc
Confidence 9999988776544 469999998765 1 1133 78999999999754
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.3e-13 Score=152.58 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCC---eEEEEcCCCCH
Q 005155 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL---SVGLIQRGMIP 83 (711)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL---tv~~i~~~~~~ 83 (711)
.+++=+|.++.++-|.||=|||.+|+|-+. .....|+.|.++.|+.=|..|.++.+. +++|+ .++..+|..+|
T Consensus 22 ~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~---~v~~ip~~~i~~ltGev~p 98 (542)
T COG1111 22 NIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCR---KVTGIPEDEIAALTGEVRP 98 (542)
T ss_pred HHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHH---HHhCCChhheeeecCCCCh
Confidence 466668888889999999999998777664 334455589999999999998777655 45566 45688889999
Q ss_pred HHHHhccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh------------hhhcCCCceeccC
Q 005155 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------------LIDEGRNPLLISG 150 (711)
Q Consensus 84 ~~r~~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~------------LiDea~tPLiiSg 150 (711)
++|.+.|. +.|.++||--+.-|.+.-.+. .. .+..+|.||||+- .+-.+.+|+|+.=
T Consensus 99 ~~R~~~w~~~kVfvaTPQvveNDl~~Grid-------~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 99 EEREELWAKKKVFVATPQVVENDLKAGRID-------LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred HHHHHHHhhCCEEEeccHHHHhHHhcCccC-------hH---HceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 99999987 599999998886666543332 22 7889999999953 2344889998853
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
..++.+ .-..+.++++.|-
T Consensus 169 TASPGs-~~ekI~eV~~nLg 187 (542)
T COG1111 169 TASPGS-DLEKIQEVVENLG 187 (542)
T ss_pred ecCCCC-CHHHHHHHHHhCC
Confidence 322222 2345677777763
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.58 E-value=4.9e-14 Score=172.20 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCe---EEEeCCCcchHhHHHHHHhcCCCccEEEEcC
Q 005155 336 RGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTN 411 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~---~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATn 411 (711)
.++..++++.+...+ .....||||+++.++.+.+++.|.+.++++ -.||++..+.+++. +....| .-.|.||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~-Vf~~~g-~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR-VFQSHS-GRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHH-HhcccC-CeeEEEecc
Confidence 345566666555443 334579999999999999999999998874 35788765555554 333445 458999999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
+|.||+||.
T Consensus 346 IAEtSITIp 354 (1294)
T PRK11131 346 VAETSLTVP 354 (1294)
T ss_pred HHhhccccC
Confidence 999999995
No 89
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.58 E-value=6.7e-12 Score=151.23 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEEeCCCcchHhHHHHHHhc-CC-CccEEEEcCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLNARPKYAAREAETVAQA-GR-KYAITISTNM 412 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L-~~~gi~~~vLnA~~~~~~~Ea~Iia~A-G~-~G~VTIATnm 412 (711)
..|...+++.++.. .+.+|||||.+.+.++.|++.| ...|+++.++|+++.+.+|+..+-..+ +. ...|.|||+.
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 46777787776543 4779999999999999999999 567999999999988888887766544 32 4689999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
+|||.|+.
T Consensus 556 gseGlNlq 563 (956)
T PRK04914 556 GSEGRNFQ 563 (956)
T ss_pred hccCCCcc
Confidence 99999984
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.57 E-value=2.7e-13 Score=162.15 Aligned_cols=278 Identities=21% Similarity=0.234 Sum_probs=186.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCC--EEEEecCHHHHHHHHHHHHHHhhhcC--CeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEG--VHVVTVNDYLAQRDAEWMERVHRFLG--LSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~--VhVvT~NdyLA~RDae~~~~~y~~LG--Ltv~ 75 (711)
++|.-|.-+.-.+++|+ |+.-.||+|||++|.+|++=+.|.+.. ..++.|+..||....+.+..+-.-+| ++++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 47999999999999998 999999999999999999877777765 49999999999999999999999888 8889
Q ss_pred EEcCCCCHHHHHhccC--CCeEEECCCchhhHHHHHhhhcchh-h-hhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 76 LIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSE-Q-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~--~DI~YgT~~elgfDyLrD~l~~~~~-~-~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
...|+.++++|+..|. +||+.+++. + .+| .+..+.+ - ...+ .+.|+||||+|.= +.++
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpd-M-Lh~---~llr~~~~~~~~~~---~Lk~lVvDElHtY--rGv~-------- 211 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPD-M-LHY---LLLRNHDAWLWLLR---NLKYLVVDELHTY--RGVQ-------- 211 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHH-H-HHH---HhccCcchHHHHHh---cCcEEEEecceec--cccc--------
Confidence 8999999988877765 599966653 2 233 2221111 1 2234 7999999999982 3311
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
-++ ..++. +.|+.
T Consensus 212 -----------------------------------------------------GS~---vA~ll-----RRL~~------ 224 (851)
T COG1205 212 -----------------------------------------------------GSE---VALLL-----RRLLR------ 224 (851)
T ss_pred -----------------------------------------------------hhH---HHHHH-----HHHHH------
Confidence 000 00111 11110
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhc---CccccccCCcccHHHHHHHH
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY---PKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y---~kl~GmTGTa~te~~Ef~~i 308 (711)
+++.| +.+..+|+|.++..+-..+.
T Consensus 225 ----------------------------------------------------~~~~~~~~~q~i~~SAT~~np~e~~~~l 252 (851)
T COG1205 225 ----------------------------------------------------RLRRYGSPLQIICTSATLANPGEFAEEL 252 (851)
T ss_pred ----------------------------------------------------HHhccCCCceEEEEeccccChHHHHHHh
Confidence 00011 13557889998877777788
Q ss_pred cCCCeEE-eCCCCCcc--c---ccCCCeEEeC---hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHH----HHHHH
Q 005155 309 FQMPVIE-VPTNLPNI--R---VDLPIQSFAT---ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS----DLLKQ 375 (711)
Q Consensus 309 Y~l~vv~-IPt~~p~~--R---~d~~d~i~~t---~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls----~~L~~ 375 (711)
.|.++.. |.-..-.. | ...|...+.. ..+++..+...+...+..|...|+||.|-..+|.+. +.+..
T Consensus 253 ~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~ 332 (851)
T COG1205 253 FGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVR 332 (851)
T ss_pred cCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhh
Confidence 8887765 43321110 0 0111111111 125666555556666789999999999999999996 45555
Q ss_pred CC----CCeEEEeCCCcchHhHHHHHH---hcCCCccEEEEcCCCcCCcce
Q 005155 376 QG----IPHNVLNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 376 ~g----i~~~vLnA~~~~~~~Ea~Iia---~AG~~G~VTIATnmAGRGTDI 419 (711)
.+ ..+.+-.+. .+..|...|. +.| ...+.||||++==|+||
T Consensus 333 ~~~~l~~~v~~~~~~--~~~~er~~ie~~~~~g-~~~~~~st~Alelgidi 380 (851)
T COG1205 333 EGGKLLDAVSTYRAG--LHREERRRIEAEFKEG-ELLGVIATNALELGIDI 380 (851)
T ss_pred cchhhhhheeecccc--CCHHHHHHHHHHHhcC-CccEEecchhhhhceee
Confidence 55 334444554 3445544333 455 55778999999999999
No 91
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.1e-12 Score=147.66 Aligned_cols=262 Identities=20% Similarity=0.247 Sum_probs=180.0
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
+-|.-.+-.+++|+ |+-|.||-||||.|-+||++. .| -+.||+|==.|=+...+.+ ...|+.++++.+.++
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~l----~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQL----EAAGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC-CEEEECchHHHHHHHHHHH----HHcCceeehhhcccC
Confidence 45777777788887 999999999999999999864 55 5667777666655444333 457899999999999
Q ss_pred HHHHHhccC------CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcC--CCceeccCCCCC
Q 005155 83 PEERRSNYR------CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG--RNPLLISGEASK 154 (711)
Q Consensus 83 ~~~r~~aY~------~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea--~tPLiiSg~~~~ 154 (711)
.++++..+. .+++|-+|.+|.-.+.++.+.. - ++..++|||||.+. +=+ +-|
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~-------~---~i~l~vIDEAHCiS-qWGhdFRP--------- 152 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR-------L---PISLVAIDEAHCIS-QWGHDFRP--------- 152 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh-------C---CCceEEechHHHHh-hcCCccCH---------
Confidence 888876543 4999999999987777776652 1 68889999999984 110 000
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.|..+-.+...|+
T Consensus 153 ---~Y~~lg~l~~~~~---------------------------------------------------------------- 165 (590)
T COG0514 153 ---DYRRLGRLRAGLP---------------------------------------------------------------- 165 (590)
T ss_pred ---hHHHHHHHHhhCC----------------------------------------------------------------
Confidence 1111111111110
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC-
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP- 312 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~- 312 (711)
-..+..+|+||... .....+..++.
T Consensus 166 -----------------------------------------------------~~p~~AlTATA~~~v~~DI~~~L~l~~ 192 (590)
T COG0514 166 -----------------------------------------------------NPPVLALTATATPRVRDDIREQLGLQD 192 (590)
T ss_pred -----------------------------------------------------CCCEEEEeCCCChHHHHHHHHHhcCCC
Confidence 01245677787653 35566655553
Q ss_pred --eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 313 --VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 313 --vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
++..-.++|.++...-. ..+...+..-|.+ ..+..++|-+|+|.|...+|.+++.|...|+....-||++...
T Consensus 193 ~~~~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~ 267 (590)
T COG0514 193 ANIFRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNE 267 (590)
T ss_pred cceEEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHH
Confidence 45566778877633211 1123344442222 2457888999999999999999999999999999999987665
Q ss_pred HhHHHHHHhcCC--CccEEEEcCCCcCCccee
Q 005155 391 AREAETVAQAGR--KYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia~AG~--~G~VTIATnmAGRGTDIk 420 (711)
+|| .+.++-. ...|.|||+=.|=|+|-.
T Consensus 268 eR~--~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 268 ERE--RVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred HHH--HHHHHHhcCCCcEEEEeccccCccCCC
Confidence 554 3434333 568999999999999985
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=1.7e-12 Score=147.80 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=76.5
Q ss_pred EecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCC
Q 005155 21 EMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCD 93 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~D 93 (711)
...||+|||+++...+. .++ .|++|.|++|...|+.|-++.+.. .||..+.+..+++++.+|...+ .++
T Consensus 3 ~g~TGsGKT~v~l~~i~-~~l~~g~~vLvlvP~i~L~~Q~~~~l~~---~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIE-KVLALGKSVLVLVPEIALTPQMIQRFKY---RFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred cCCCCCCHHHHHHHHHH-HHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 34699999999865543 455 588999999999999988877665 4588999999999887776554 479
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
|++||.+.+ | .-.. ++..+||||+|.....
T Consensus 79 IVVGTrsal-f-------------~p~~---~l~lIIVDEeh~~syk 108 (505)
T TIGR00595 79 VVIGTRSAL-F-------------LPFK---NLGLIIVDEEHDSSYK 108 (505)
T ss_pred EEECChHHH-c-------------Cccc---CCCEEEEECCCccccc
Confidence 999998755 2 1133 7899999999986543
No 93
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=1e-13 Score=142.22 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=98.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CC-CEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GE-GVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---G~-~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
-|-.||--+++--.-|. ++|.+.|-|||.+|+|+.+ +.|. |. .|.|+|.+++||-|...++..|-+++ +++|
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~tl-qqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhh-hhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 37789999999555565 9999999999999999885 6663 42 68899999999999999999999988 8999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++..||++... -...--.+|++|||+++ ....|.. .+.+. +....|+||+|.||
T Consensus 143 aVFfGG~~Ikkdee~lk~~PhivVgTPGri-lALvr~k------~l~lk---~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLKNCPHIVVGTPGRI-LALVRNR------SLNLK---NVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceeccccHHHHhCCCeEEEcCcHHH-HHHHHhc------cCchh---hcceeehhhHHHHH
Confidence 99999987322 12222448999999997 2333321 23444 77889999999998
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=1.1e-12 Score=160.86 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCC---eEEEeCCCcchHhHHHHHHhcCCCccEEEEcCC
Q 005155 337 GKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP---HNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (711)
Q Consensus 337 ~K~~aIi~ei~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~---~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnm 412 (711)
++..++++.+...+. ....||||+++..+.+.+++.|.+.+.+ +-.||+...+.+++.. ... +..-.|.||||+
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v-f~~-~~~rkIVLATNI 339 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV-FQP-HSGRRIVLATNV 339 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH-hCC-CCCceEEEeccH
Confidence 355566665655432 3457999999999999999999987654 4568887655555533 332 323589999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
|.||+||.
T Consensus 340 AEtSLTIp 347 (1283)
T TIGR01967 340 AETSLTVP 347 (1283)
T ss_pred HHhccccC
Confidence 99999994
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.39 E-value=3.4e-12 Score=126.57 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=104.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|++.|..+...+++|+ ++++.||.|||+++++|+.-.... |..|.|++|+..|+.+-++.+..+....++.+
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 48999999999999887 999999999999999998643333 33699999999999999999999988889999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+..++.+.......| +++|+++|+..+ .+++..+ . ...+ .+.++||||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~----~--~~~~---~l~~lIvDE~h~~~ 156 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG----K--LDLS---KVKYLVLDEADRML 156 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC----C--CChh---hCCEEEEeChHHhh
Confidence 9999988766655566 789999999877 4444322 1 2234 78999999999985
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.39 E-value=1.8e-11 Score=137.33 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=81.5
Q ss_pred CCCchhHHHHHHHHh---CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe--E
Q 005155 1 MRHFDVQIIGGAVLH---DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS--V 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~---~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt--v 74 (711)
+|||-.|.+-.+.-+ .++ ++.+.||.|||++++-.+. ..+..|.||+||..|..| |...++.+++.. +
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~---~~~~~~Lvlv~~~~L~~Q---w~~~~~~~~~~~~~~ 110 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELLDQ---WAEALKKFLLLNDEI 110 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH---HhcCCEEEEECcHHHHHH---HHHHHHHhcCCcccc
Confidence 355656666666554 444 9999999999999887774 344449999999999996 667888888885 5
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
|.+.++... ... .+|+|+|-..+... .++. ....+ .+..+|+||||.+..+
T Consensus 111 g~~~~~~~~----~~~-~~i~vat~qtl~~~---~~l~----~~~~~---~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 111 GIYGGGEKE----LEP-AKVTVATVQTLARR---QLLD----EFLGN---EFGLIIFDEVHHLPAP 161 (442)
T ss_pred ceecCceec----cCC-CcEEEEEhHHHhhh---hhhh----hhccc---ccCEEEEEccccCCcH
Confidence 655444211 111 67999997666321 1111 22233 7999999999998543
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.37 E-value=7.4e-12 Score=119.69 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=99.9
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+|.|.-+...+.+|+ ++.+.||.|||+++.+|++-....++ .+.+++|+.+|+.+-++++..++...++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 478999999888777 99999999999999999974445555 89999999999999999999999999999999998
Q ss_pred CCCHH-HH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 80 GMIPE-ER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 80 ~~~~~-~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
+.+.. .. .....++|+++|+..| +++++. . ..... .+.++|+||+|.+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~----~--~~~~~---~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQL-LDLISN----G--KINIS---RLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHH-HHHHHT----T--SSTGT---TESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccCcchh-hccccc----c--ccccc---cceeeccCccccccc
Confidence 87733 22 2334699999999876 333332 1 11223 589999999999864
No 98
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.33 E-value=2.9e-10 Score=137.08 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=83.9
Q ss_pred ehhHhhhcCccccccCCccc--HHHHHHHHcCCC---eEEe-CCCCCc---cc----ccCCCeEEeChhHHHHHHHHHHH
Q 005155 281 YQSLFKLYPKLSGMTGTAKT--EEKEFLKMFQMP---VIEV-PTNLPN---IR----VDLPIQSFATARGKWEYARQEVE 347 (711)
Q Consensus 281 ~q~~F~~Y~kl~GmTGTa~t--e~~Ef~~iY~l~---vv~I-Pt~~p~---~R----~d~~d~i~~t~~~K~~aIi~ei~ 347 (711)
.+.+|..+..+..+|||+.. .-+-|.+..|++ +..+ |+-.+. .+ .|.|..-..+.++-..++++.|.
T Consensus 588 ~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~ 667 (850)
T TIGR01407 588 TKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYII 667 (850)
T ss_pred HHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHH
Confidence 35666777788888999874 334566777874 1223 443331 11 11221112233444557777776
Q ss_pred Hhhh-cCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 348 SMFR-LGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 348 ~~~~-~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+... .+.++||+|+|.+..+.++..|.. .+++ ++.-. .+..++.-+-. +.| .+.|.++|+-+.+|+|+.
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~-~~~~r~~ll~~F~~~-~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQG-INGSRAKIKKRFNNG-EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecC-CCccHHHHHHHHHhC-CCeEEEEcceeecccccC
Confidence 6543 445799999999999999999976 2333 34322 12234433322 345 678999999999999998
No 99
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.25 E-value=3.5e-10 Score=133.37 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred hHHHHHHHHh---CCCeEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 6 VQIIGGAVLH---DGSIAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 6 vQl~g~~~L~---~G~IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+|-++-+... ++.|+.+.||.|||-+|.|.++ +.+. +-++-=|.|...||.--.+.+.+=+..||
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~IL-r~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCIL-RTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHH-HHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 5767766554 3459999999999999999985 8876 23677899999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 72 LSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
++|.-.+|++.- -+.+.-.|||++.||.- ||.+-..-..+ ...+. ....+||||||-+ -|+
T Consensus 193 i~v~ELTGD~ql-~~tei~~tqiiVTTPEK--wDvvTRk~~~d--~~l~~---~V~LviIDEVHlL-hd~ 253 (1230)
T KOG0952|consen 193 ISVRELTGDTQL-TKTEIADTQIIVTTPEK--WDVVTRKSVGD--SALFS---LVRLVIIDEVHLL-HDD 253 (1230)
T ss_pred ceEEEecCcchh-hHHHHHhcCEEEecccc--eeeeeeeeccc--hhhhh---heeeEEeeeehhh-cCc
Confidence 999999999753 23347889999999987 45442221111 12333 5789999999954 454
No 100
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.24 E-value=3.1e-10 Score=134.74 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=89.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Y 96 (711)
|+.+.||+|||++|.|+++ +.|. |.+|.-|+|...||..-++++. =++.+|++|+..+++++... .....|||++
T Consensus 51 li~aPTgsGKTlIA~lai~-~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~-~~l~~~~ViV 127 (766)
T COG1204 51 LISAPTGSGKTLIALLAIL-STLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDD-ERLARYDVIV 127 (766)
T ss_pred EEEcCCCCchHHHHHHHHH-HHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccch-hhhccCCEEE
Confidence 9999999999999999997 6665 4789999999999999999998 88999999999999986432 4567899999
Q ss_pred ECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCc
Q 005155 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (711)
Q Consensus 97 gT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tP 145 (711)
+|+.-| |-|..+-. . ... .++.+||||+|-+- |+-|-|
T Consensus 128 tT~EK~--Dsl~R~~~----~-~~~---~V~lvViDEiH~l~-d~~RG~ 165 (766)
T COG1204 128 TTPEKL--DSLTRKRP----S-WIE---EVDLVVIDEIHLLG-DRTRGP 165 (766)
T ss_pred EchHHh--hHhhhcCc----c-hhh---cccEEEEeeeeecC-CcccCc
Confidence 999875 43332211 1 333 78999999999863 553544
No 101
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.23 E-value=1.1e-10 Score=106.27 Aligned_cols=88 Identities=22% Similarity=0.313 Sum_probs=68.5
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc
Q 005155 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT 410 (711)
..+.+.|...+.+.+.+..+.+.++||||+++..++.+.+.|++.++++..+++.....++.+.+-+ +.| ...|+|+|
T Consensus 7 ~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t 85 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVAT 85 (131)
T ss_pred EECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEc
Confidence 3444478888888888766678999999999999999999999999999999987543333332322 233 35699999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
+++|+|+|+.
T Consensus 86 ~~~~~G~d~~ 95 (131)
T cd00079 86 DVIARGIDLP 95 (131)
T ss_pred ChhhcCcChh
Confidence 9999999983
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.20 E-value=8.6e-09 Score=126.93 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=75.3
Q ss_pred CchhHHHHHHHH----hCC---CeEEecCCCcHHHHHHHHHHHH--HHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 3 HFDVQIIGGAVL----HDG---SIAEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 3 p~dvQl~g~~~L----~~G---~IaEm~TGEGKTLva~Lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|-|.-++-.+ .+| -++.|.||+|||++++..++.. +-..+.|.++++...|..|-.+.|..+.-.-+.+
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 455676666543 233 3999999999999865554421 1134689999999999999988887763222222
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+..+.+...-......-...|+++|.-.|.-..+. ..+......+..++++||||||+.
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~-----~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILY-----SDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhc-----cccccccCCCCcccEEEEECCCCC
Confidence 22121111111122234578999998765221111 100100011227899999999974
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.12 E-value=1.7e-08 Score=122.91 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh-cCCCc--cEEEEcC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ-AGRKY--AITISTN 411 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~-AG~~G--~VTIATn 411 (711)
...|...+...+......|..|||||......+.|.+.|...|+++..+++.....+|++.|-.. +..++ .+.++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 45677766666666677899999999999999999999999999999999987667777666653 33233 5789999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
.+|-|++..
T Consensus 549 AGGlGINLt 557 (1033)
T PLN03142 549 AGGLGINLA 557 (1033)
T ss_pred ccccCCchh
Confidence 999999863
No 104
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.09 E-value=1.8e-09 Score=129.90 Aligned_cols=270 Identities=20% Similarity=0.213 Sum_probs=177.3
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
.+.|.-++.+.+.|+ .+.|.||-||+|.+-|||+ |.+.-..||.|=..|=+... ..+ ...+|....+.+++
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---l~~gitvVISPL~SLm~DQv---~~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---LLGGVTVVISPLISLMQDQV---THL-SKKGIPACFLSSIQ 338 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---ccCCceEEeccHHHHHHHHH---Hhh-hhcCcceeeccccc
Confidence 367888888999998 9999999999999999998 56667778888778776433 334 56789999999999
Q ss_pred CHHHHHhccC--------CCeEEECCCchh-hHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 82 IPEERRSNYR--------CDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 82 ~~~~r~~aY~--------~DI~YgT~~elg-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+..++...|+ .+|+|.||.-+. -.-|...+. .+..| ..+-.++|||||.+.
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~----~L~~~--~~lal~vIDEAHCVS-------------- 398 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA----DLYAR--GLLALFVIDEAHCVS-------------- 398 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH----hccCC--CeeEEEEecHHHHhh--------------
Confidence 9888777764 489999986542 011111111 11111 136789999999984
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
-| +-||. +. .+++.. | ..+..
T Consensus 399 -----qW------------gHdFR-----------------------------p~---Yk~l~~-l-----~~~~~---- 419 (941)
T KOG0351|consen 399 -----QW------------GHDFR-----------------------------PS---YKRLGL-L-----RIRFP---- 419 (941)
T ss_pred -----hh------------ccccc-----------------------------HH---HHHHHH-H-----HhhCC----
Confidence 00 00111 11 112211 1 01000
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l 311 (711)
++ -+.++|+||.+- .+...+--|+
T Consensus 420 ---------------------------------~v----------------------P~iALTATAT~~v~~DIi~~L~l 444 (941)
T KOG0351|consen 420 ---------------------------------GV----------------------PFIALTATATERVREDVIRSLGL 444 (941)
T ss_pred ---------------------------------CC----------------------CeEEeehhccHHHHHHHHHHhCC
Confidence 01 256889999653 3445555544
Q ss_pred ---CeEEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 312 ---PVIEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 312 ---~vv~IPt~~p~~R~d~~d~i~~t~-~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.++.--.|+|... ..|-... ......+...++.. ..+++.+|.|.+..++|.++..|...|+.....||++
T Consensus 445 ~~~~~~~~sfnR~NL~----yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 445 RNPELFKSSFNRPNLK----YEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGL 519 (941)
T ss_pred CCcceecccCCCCCce----EEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCC
Confidence 3343344555433 3333333 34444566666654 5789999999999999999999999999999999986
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.-.+|+..-.+ ..+ .-+|.+||=+.|=|+|-+
T Consensus 520 ~~~~R~~Vq~~w~~~-~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 520 PPKERETVQKAWMSD-KIRVIVATVAFGMGIDKP 552 (941)
T ss_pred CHHHHHHHHHHHhcC-CCeEEEEEeeccCCCCCC
Confidence 54555532222 444 358999999999999975
No 105
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=2e-08 Score=120.76 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=84.5
Q ss_pred hhHhhhcCccccccCCcccH-HHHHHHHcCCCe---EEeCCCCCccc-----ccCCCeEEeChhHHHHHHHHHHHHhhhc
Q 005155 282 QSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMPV---IEVPTNLPNIR-----VDLPIQSFATARGKWEYARQEVESMFRL 352 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~v---v~IPt~~p~~R-----~d~~d~i~~t~~~K~~aIi~ei~~~~~~ 352 (711)
+.+|.....+..+|||+... ...|.+..|++. ..+|.+.+..+ .|.|+.--.+.++...++++.|......
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~ 646 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQL 646 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 67777777888889998521 112777778742 22332222111 1222211123344555777777666667
Q ss_pred CCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCcceecC
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILG 422 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIkLg 422 (711)
+.++||+++|-+.-+.+++.|....+++ +.-+. ...++ .+++ +.+ .++|.++|.-.--|+|+.=|
T Consensus 647 ~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~--~~~~~-~l~~~F~~~-~~~vLlG~~sFwEGVD~p~~ 713 (820)
T PRK07246 647 QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEK--NGTAY-NIKKRFDRG-EQQILLGLGSFWEGVDFVQA 713 (820)
T ss_pred CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCC--CccHH-HHHHHHHcC-CCeEEEecchhhCCCCCCCC
Confidence 7899999999999999999998765554 22221 11222 3444 333 56899999999999999633
No 106
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.05 E-value=3.8e-09 Score=115.25 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=83.9
Q ss_pred chhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 4 FDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
.|.|-.+..+..+|+ -+.|.||.||+|.+-||++ +.|.--.|+.|==.|-+...+ -..-|.+.|....+.
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL---~~~gITIV~SPLiALIkDQiD----HL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL---VHGGITIVISPLIALIKDQID----HLKRLKVPCESLNSK 94 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH---HhCCeEEEehHHHHHHHHHHH----HHHhcCCchhHhcch
Confidence 578999999998888 8999999999999999997 344433344443333332222 233456677777788
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 81 MIPEERRSNY--------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+.++|...- .-.+.|-||..-.-|...+.+.. ++.| -.+.|++|||||.+
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r--~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANR--DVLRYIVVDEAHCV 153 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----Hhhh--ceeeeEEechhhhH
Confidence 8887776432 34799999987766666655542 2332 15789999999998
No 107
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.03 E-value=1.6e-08 Score=118.79 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
...++..+++++.+..+.|..|||||.|...++.|++.|...|+++.++|+.+.+.+|+..+.. +.| .-.|+|||+++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L 506 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLL 506 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHH
Confidence 3456788999999888899999999999999999999999999999999997666666644444 455 45788999999
Q ss_pred cCCccee
Q 005155 414 GRGTDII 420 (711)
Q Consensus 414 GRGTDIk 420 (711)
+||.|+.
T Consensus 507 ~rGfdlp 513 (652)
T PRK05298 507 REGLDIP 513 (652)
T ss_pred hCCcccc
Confidence 9999995
No 108
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.03 E-value=2.6e-09 Score=96.17 Aligned_cols=111 Identities=24% Similarity=0.280 Sum_probs=85.0
Q ss_pred CCeEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH--HHhccCC
Q 005155 17 GSIAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RRSNYRC 92 (711)
Q Consensus 17 G~IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~--r~~aY~~ 92 (711)
+-+..+.||+|||.++..++..... ..+.+.|++||..|+.+-.+.+...+.. ++.+..+.+...... ......+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 4588999999999998888874444 5579999999999999999988887776 788888877655333 3346788
Q ss_pred CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 93 DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+|+++|+..+...+.... ...+ .++++||||+|.+.
T Consensus 81 ~i~i~t~~~~~~~~~~~~-------~~~~---~~~~iiiDE~h~~~ 116 (144)
T cd00046 81 DIVVGTPGRLLDELERLK-------LSLK---KLDLLILDEAHRLL 116 (144)
T ss_pred CEEEECcHHHHHHHHcCC-------cchh---cCCEEEEeCHHHHh
Confidence 999999987743322221 2233 78999999999985
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.93 E-value=1e-08 Score=97.99 Aligned_cols=127 Identities=29% Similarity=0.281 Sum_probs=89.3
Q ss_pred CCchhHHHHHHHHhCC-C--eEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G-~--IaEm~TGEGKTLva~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|++.|.-+.-.++++ + +..+.||+|||.+++.+++-....+ +.+.+++|+..++.+-...+..++.........
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 5788999888887764 3 9999999999999999987555554 789999999999998777777766655533343
Q ss_pred EcCCCC-HHHHH-hccCC-CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 77 IQRGMI-PEERR-SNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 77 i~~~~~-~~~r~-~aY~~-DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.++.. .+... ..-.+ +|+++|++.+ ++.+.. .. .... ++.++||||+|.+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l-~~~~~~----~~--~~~~---~~~~iIiDE~h~~~ 142 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRL-LDLLEN----DL--LELS---NVDLVILDEAHRLL 142 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHH-HHHHHc----CC--cCHh---HCCEEEEECHHHHh
Confidence 444433 22222 22334 9999998765 333322 21 2233 78899999999984
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.93 E-value=2.2e-07 Score=110.41 Aligned_cols=125 Identities=25% Similarity=0.351 Sum_probs=98.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEE-
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLI- 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv~~i- 77 (711)
+|+..|-+=+-.+..|+ =+-+.||-|||---++.++..|..|+.|.+|-||.-|++|-++.+..|-+--| +.+-.+
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 68889999999999999 55678999999765555555899999999999999999999999999987666 655554
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+.++.++|+++- +.||.++|+. ||..|+. .+..- +|+|++||.||++|
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~-----FL~k~~e----~L~~~---kFdfifVDDVDA~L 216 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQ-----FLSKRFE----ELSKL---KFDFIFVDDVDAIL 216 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHH-----HHHhhHH----Hhccc---CCCEEEEccHHHHH
Confidence 4557777766543 3699999975 4666553 23333 79999999999998
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.91 E-value=7.6e-08 Score=114.66 Aligned_cols=132 Identities=20% Similarity=0.113 Sum_probs=85.2
Q ss_pred cccccCCcccH-HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeC---hhHHH-HHHHHHHHHhhhcCCcEEEEecchhh
Q 005155 291 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT---ARGKW-EYARQEVESMFRLGRPVLVGSTSVEN 365 (711)
Q Consensus 291 l~GmTGTa~te-~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t---~~~K~-~aIi~ei~~~~~~grPVLV~t~Si~~ 365 (711)
+.-||+|..+. .++|.+.++-...+.++...+.-.+.+...-.. ..+.. ......+....+.|.+|||+|+||..
T Consensus 373 ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 373 VLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 45688898875 455666776655554443322222222111111 01110 12344455556899999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEeCCCcchHh---HHHHHHh-cCCCccEEEEcCCCcCCcceecC
Q 005155 366 SEYLSDLLKQQGIPHNVLNARPKYAAR---EAETVAQ-AGRKYAITISTNMAGRGTDIILG 422 (711)
Q Consensus 366 SE~Ls~~L~~~gi~~~vLnA~~~~~~~---Ea~Iia~-AG~~G~VTIATnmAGRGTDIkLg 422 (711)
|..+...|+..+.+.-+||++.....| |.++.+. +...+-|.|||...-=|+||..+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd 513 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD 513 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC
Confidence 999999999998878899997433333 3344433 56678999999999999999643
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.9e-07 Score=98.84 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCe-EEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcc
Q 005155 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPH-NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418 (711)
Q Consensus 341 aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~-~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTD 418 (711)
++...++..+++|+|||||.++|+..|.+++.|++. .-.+ ...++. .++..|.----+-| .-.|.|+|-+.-||+-
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~EkV~~fR~G-~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEKVEAFRDG-KITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHHHHHHHcC-ceEEEEEeehhhcccc
Confidence 577788888899999999999999999999999654 2222 334553 34555532222555 5588999999999987
Q ss_pred ee
Q 005155 419 II 420 (711)
Q Consensus 419 Ik 420 (711)
+.
T Consensus 371 fp 372 (441)
T COG4098 371 FP 372 (441)
T ss_pred cc
Confidence 74
No 113
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.82 E-value=5e-07 Score=110.32 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=85.4
Q ss_pred hhHhhhcCccccccCCcccH--HHHHHHHcCCC-----eEEeCCCCCcc---c----ccCCCeEEeChhHHHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP-----VIEVPTNLPNI---R----VDLPIQSFATARGKWEYARQEVE 347 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te--~~Ef~~iY~l~-----vv~IPt~~p~~---R----~d~~d~i~~t~~~K~~aIi~ei~ 347 (711)
+.+|........+|||+... -.-|.+..|++ ...+|+-.+.. + .|.|+.-..+.++-...+++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 34556667888999999753 24456777874 35677754431 1 12232112233444567777776
Q ss_pred Hhh-hcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCccee
Q 005155 348 SMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 348 ~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~--~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.. ..+.++||+++|-+.-+.+++.|+..... ..++.-+.....++ .+++ +.+ .+.|.++|.-..-|+|+.
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~-~l~~~F~~~-~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRA-RLTKQFQQF-DKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHH-HHHHHHHhc-CCeEEEecCcccCccccC
Confidence 665 45569999999999999999999865321 22332111112233 2333 333 578999999999999987
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.79 E-value=1.1e-07 Score=111.82 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=114.1
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHh--HhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEa--KEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
||. .++-+++||+..--...-+.|-.|.+...+. ..|..+.+. ..--..++..|.+.-....-+|.|-+... ..
T Consensus 324 DY~-p~d~lv~iDE~~~~~~q~~~m~~~~~~~~~~lve~g~~lp~~-~~n~~l~~~e~~~~~~q~I~lSaTp~~~e--~~ 399 (655)
T TIGR00631 324 DYF-PDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSA-LDNRPLKFEEFEERINQVVYVSATPGPYE--LE 399 (655)
T ss_pred HhC-CCccEEEEecHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc-ccccCcCHHHHHHhcCCEEEEECCCCcch--hh
Confidence 555 3567888998654444444444444432221 124443311 00113467777666666666776654422 11
Q ss_pred HHcCCCe-EEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 307 KMFQMPV-IEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 307 ~iY~l~v-v~I-Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
..-++ + ..+ |+..+ + |..-......++..+++++....++|.+|||||.|.+.++.|++.|.+.|+++..+|
T Consensus 400 ~~~~i-v~~i~rp~gl~----~-p~~~v~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh 473 (655)
T TIGR00631 400 QSGNV-VEQIIRPTGLL----D-PEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLH 473 (655)
T ss_pred hccCe-eeeeccccCCC----C-CcEEEeeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeee
Confidence 11111 1 122 22211 1 111223345678889999998888999999999999999999999999999999999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+.+|+..+.. +.| .-.|+||||+++||.|+.
T Consensus 474 ~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 474 SEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLP 509 (655)
T ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeC
Confidence 97666666655544 455 457889999999999995
No 115
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.68 E-value=5.3e-07 Score=97.44 Aligned_cols=268 Identities=17% Similarity=0.216 Sum_probs=161.4
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
.|.|+-++-+.+.|. +.-|.||-||+|.+-||++ +...-..||+|=-.|-+...- ..+.||++......+.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal---~adg~alvi~plislmedqil----~lkqlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL---CADGFALVICPLISLMEDQIL----QLKQLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH---hcCCceEeechhHHHHHHHHH----HHHHhCcchhhccCcc
Confidence 478998888888877 8899999999999999997 334457899998777764433 3567899988777776
Q ss_pred CHHHHHhc----cC----CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 82 IPEERRSN----YR----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 82 ~~~~r~~a----Y~----~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.++-+.. -+ -..+|.||..+. ...+-+++-+.... -|-|...-|||||.-- .
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekia----ksk~~mnkleka~~-~~~~~~iaidevhccs--q------------ 229 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIA----KSKKFMNKLEKALE-AGFFKLIAIDEVHCCS--Q------------ 229 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHH----HHHHHHHHHHHHhh-cceeEEEeecceeehh--h------------
Confidence 65543321 11 258899997764 22222222222221 1257788899999852 0
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
-+-||..| |. | -.+++
T Consensus 230 -----------------wghdfr~d-------------------------y~-----------~---l~ilk-------- 245 (695)
T KOG0353|consen 230 -----------------WGHDFRPD-------------------------YK-----------A---LGILK-------- 245 (695)
T ss_pred -----------------hCcccCcc-------------------------hH-----------H---HHHHH--------
Confidence 01122221 00 1 11111
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcC--ccccccCCcccH-HHHHHHHcC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP--KLSGMTGTAKTE-EKEFLKMFQ 310 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~--kl~GmTGTa~te-~~Ef~~iY~ 310 (711)
|+|+ .|.|+|+||.+- -.....+.+
T Consensus 246 ----------------------------------------------------rqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 246 ----------------------------------------------------RQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred ----------------------------------------------------HhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 1111 256777777652 233333333
Q ss_pred CC---eEEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 311 MP---VIEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 311 l~---vv~IPt~~p~~R~d~~d~i~---~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
+. .+.---|+|... -.|- .++++-.+.|+..|+.. -.||.-+|.|-|-.++|.++..|+.+||.....|
T Consensus 274 ie~~~tf~a~fnr~nl~----yev~qkp~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yh 348 (695)
T KOG0353|consen 274 IEAAFTFRAGFNRPNLK----YEVRQKPGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYH 348 (695)
T ss_pred HHhhheeecccCCCCce----eEeeeCCCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccc
Confidence 32 222233444321 1111 23444445566666544 3789999999999999999999999999887777
Q ss_pred CCCcchHhH-HHHHHhcCCCccEEEEcCCCcCCcce
Q 005155 385 ARPKYAARE-AETVAQAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 385 A~~~~~~~E-a~Iia~AG~~G~VTIATnmAGRGTDI 419 (711)
|.++-..+- ++--=-|| .-+|.|||=-.|-|+|=
T Consensus 349 a~lep~dks~~hq~w~a~-eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 349 ANLEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK 383 (695)
T ss_pred cccCcccccccccccccc-ceEEEEEEeeecccCCC
Confidence 753222111 11101234 44899999999999985
No 116
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.63 E-value=5.9e-08 Score=106.18 Aligned_cols=280 Identities=14% Similarity=0.207 Sum_probs=147.1
Q ss_pred CEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhh
Q 005155 45 GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLV 119 (711)
Q Consensus 45 ~VhVvT~NdyLA~RDae~~~~~y~~L---GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v 119 (711)
...||-|+++||++-..++..|-..+ -++.-++.++.- .+-++..-+.|||+||++++ .+-+... ...
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl-----~~~is~g--~~~ 360 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRL-----LQPISKG--LVT 360 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhh-----hhhhhcc--cee
Confidence 57899999999999999988886655 233335555432 22334456789999999997 3333221 223
Q ss_pred cCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcC
Q 005155 120 MRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALE 199 (711)
Q Consensus 120 ~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~ 199 (711)
+. .+.|+++||+|-+|-.. .+ ..++++-.+++. -.-|...-++-+-..-. .+|.
T Consensus 361 lt---~crFlvlDead~lL~qg-y~---------------d~I~r~h~qip~---~tsdg~rlq~~vCsatl----h~fe 414 (725)
T KOG0349|consen 361 LT---HCRFLVLDEADLLLGQG-YD---------------DKIYRFHGQIPH---MTSDGFRLQSPVCSATL----HIFE 414 (725)
T ss_pred ee---eeEEEEecchhhhhhcc-cH---------------HHHHHHhccchh---hhcCCcccccceeeeEE----eEEE
Confidence 44 78999999999987321 11 123444444431 11010000000000000 0001
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeee
Q 005155 200 TNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQI 279 (711)
Q Consensus 200 ~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~I 279 (711)
+..+=..-..++.||. |+-..+...-+|.+ |++||+.++ +.|.+ |.|+|+.- ++. +..+.-....
T Consensus 415 Vkk~~ervmhfptwVd--LkgeD~vpetvHhv-----v~lv~p~~d-----~sw~~-lr~~i~td-~vh-~kdn~~pg~~ 479 (725)
T KOG0349|consen 415 VKKVGERVMHFPTWVD--LKGEDLVPETVHHV-----VKLVCPSVD-----GSWCD-LRQFIETD-KVH-TKDNLLPGQV 479 (725)
T ss_pred eeehhhhhccCceeEe--cccccccchhhccc-----eeecCCccC-----ccHHH-HhhhhccC-Ccc-cccccccccC
Confidence 1000000012333443 22222233333333 467887654 56765 36777621 110 0000000000
Q ss_pred eehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEE
Q 005155 280 TYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359 (711)
Q Consensus 280 s~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~ 359 (711)
| |+ .|+.+ ..|+..+. + +..|. .|+- -..+||
T Consensus 480 S------------------------------------pe-~~s~a----~kilkgEy----~-v~ai~-~h~m-dkaiif 511 (725)
T KOG0349|consen 480 S------------------------------------PE-NPSSA----TKILKGEY----G-VVAIR-RHAM-DKAIIF 511 (725)
T ss_pred C------------------------------------CC-Chhhh----hHHhcCch----h-hhhhh-hhcc-CceEEE
Confidence 0 11 11111 11222211 1 11222 2333 356899
Q ss_pred ecchhhHHHHHHHHHHCC---CCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 360 STSVENSEYLSDLLKQQG---IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 360 t~Si~~SE~Ls~~L~~~g---i~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|++..+++.|.+++.++| .+|.-|+++.+-+++-+++-...-..-...|+|+.|.||+||.
T Consensus 512 crtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 512 CRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred EeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 999999999999999987 4677799987777887777654333457789999999999995
No 117
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.52 E-value=4.7e-06 Score=99.03 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=83.8
Q ss_pred hhHhhhcCccccccCCcccH--HHHHHHHcCCC------eEEeCCCCCcc---cccCCCeEE--eChhHHHHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP------VIEVPTNLPNI---RVDLPIQSF--ATARGKWEYARQEVES 348 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te--~~Ef~~iY~l~------vv~IPt~~p~~---R~d~~d~i~--~t~~~K~~aIi~ei~~ 348 (711)
..+|+.+.....+|||+... -.-|.+.-|++ .+.+|+.++.. ..-.|+..+ .+.++...++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45667777888888988753 24455666764 45677766541 111222111 1344556678888876
Q ss_pred hhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHH----Hh--cCCCccEEEEcCCCcCCccee
Q 005155 349 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV----AQ--AGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 349 ~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Ii----a~--AG~~G~VTIATnmAGRGTDIk 420 (711)
....+..+||+++|-+.-+.+++.|... ....++--+ . ..+++ ++ +. +| .+.|.++|.-..=|+|++
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~-~~~~ll~Q~-~-~~~~~-ll~~f~~~~~~~-~~~VL~g~~sf~EGVD~p 602 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRD-LRLMLLVQG-D-QPRQR-LLEKHKKRVDEG-EGSVLFGLQSFAEGLDLP 602 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHh-cCCcEEEeC-C-chHHH-HHHHHHHHhccC-CCeEEEEeccccccccCC
Confidence 6655545899999999999999998753 122333221 1 12332 22 21 34 678999999999999997
No 118
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=1.1e-05 Score=97.49 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=71.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC------------CEEEEecCHHHHHHHHHHHHHH---hhhcCCeEEEEcCCCCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGE------------GVHVVTVNDYLAQRDAEWMERV---HRFLGLSVGLIQRGMIP 83 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~------------~VhVvT~NdyLA~RDae~~~~~---y~~LGLtv~~i~~~~~~ 83 (711)
+....||.|||-+|+|.++ +.+.++ .+-=+.|-..|++ ||.+.| +..||++|+-.++++..
T Consensus 329 LlCAPTGaGKTNVAvLtiL-qel~~h~r~dgs~nl~~fKIVYIAPmKaLvq---E~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 329 LLCAPTGAGKTNVAVLTIL-QELGNHLREDGSVNLAPFKIVYIAPMKALVQ---EMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred EEeccCCCCchHHHHHHHH-HHHhcccccccceecccceEEEEeeHHHHHH---HHHHHHHhhccccCcEEEEecccccc
Confidence 8888999999999999995 777554 2333566678887 566655 56889999999888542
Q ss_pred HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 84 EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 84 ~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
.+++.-...|++|||... |-+-.+=... ..++ -++.+|+||+|-
T Consensus 405 -~~~qieeTqVIV~TPEK~--DiITRk~gdr--aY~q----lvrLlIIDEIHL 448 (1674)
T KOG0951|consen 405 -GKEQIEETQVIVTTPEKW--DIITRKSGDR--AYEQ----LVRLLIIDEIHL 448 (1674)
T ss_pred -hhhhhhcceeEEeccchh--hhhhcccCch--hHHH----HHHHHhhhhhhh
Confidence 233445678999999873 4442211100 1122 356789999984
No 119
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.43 E-value=1.8e-05 Score=96.40 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=95.7
Q ss_pred chhHHHHHHHH----hCCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 4 FDVQIIGGAVL----HDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 4 ~dvQl~g~~~L----~~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|=|+.++=.. .+|+ +++=.-|=|||-||+=+|+..+..|++|-|++||--||+|-++.|..=|.-++++|.
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~ 675 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIE 675 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEE
Confidence 35688877654 3555 888899999999999999988899999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
....=.+..+.++.- ..||++||..=|+ . +.... ++..+||||=+++
T Consensus 676 ~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----k-------dv~Fk---dLGLlIIDEEqRF 728 (1139)
T COG1197 676 VLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----K-------DVKFK---DLGLLIIDEEQRF 728 (1139)
T ss_pred EecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----C-------CcEEe---cCCeEEEechhhc
Confidence 887655655554332 4699999986442 1 23344 7889999997775
No 120
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.41 E-value=1.1e-06 Score=84.56 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCchhHHHHHHHHh--------CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLH--------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~--------~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.++|-|..+.-.+. .++ +..|.||.|||.+++..+. .|.. .+.+++||..|+.|-.+.+..+......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~--~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~ 79 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL--ELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYN 79 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH--HHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh--cccc-ceeEecCHHHHHHHHHHHHHHhhhhhhh
Confidence 35566666666554 122 9999999999998885443 2333 8999999999999888887544432221
Q ss_pred eEEEE-----------cC--CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhc----chhhhhcCCCCCccEEEeechh
Q 005155 73 SVGLI-----------QR--GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVD 135 (711)
Q Consensus 73 tv~~i-----------~~--~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvD 135 (711)
..... .. .............+|.+.|...+.-+.-...... ........ .++++|+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~vI~DEaH 156 (184)
T PF04851_consen 80 FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN---KFDLVIIDEAH 156 (184)
T ss_dssp EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG---SESEEEEETGG
T ss_pred hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc---cCCEEEEehhh
Confidence 11110 11 1123333445677899999877743321110000 00111223 67899999999
Q ss_pred hhhhhc
Q 005155 136 SVLIDE 141 (711)
Q Consensus 136 s~LiDe 141 (711)
.+--+.
T Consensus 157 ~~~~~~ 162 (184)
T PF04851_consen 157 HYPSDS 162 (184)
T ss_dssp CTHHHH
T ss_pred hcCCHH
Confidence 975443
No 121
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.34 E-value=2.1e-06 Score=100.45 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=52.9
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHh-hhcC--CeEEEE
Q 005155 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVH-RFLG--LSVGLI 77 (711)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y-~~LG--Ltv~~i 77 (711)
+|.+|. ++|+.||.|||+++++|+...+. .+++|.|.|||..|+.|-.+.+..+- +.+| +++.++
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345555 89999999999999999976666 48999999999999999999888777 5554 444443
No 122
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.34 E-value=2.1e-05 Score=94.46 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=72.4
Q ss_pred cccccCCcccHHHHHHHHcC-CCeEEeCCC-CCcccccCCCeEEeChhH-HHHHHHHHHHHhhhc-CCcEEEEecchhhH
Q 005155 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFATARG-KWEYARQEVESMFRL-GRPVLVGSTSVENS 366 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~i~~t~~~-K~~aIi~ei~~~~~~-grPVLV~t~Si~~S 366 (711)
+.-||+|+.. +.|.+.++ .+|+.||.- .|+...-.+.. ..+. -..+++.-|...... .-.||||.+-.++-
T Consensus 198 iIimSATld~--~rfs~~f~~apvi~i~GR~fPVei~Y~~~~---~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPVEIRYLPEA---EADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCEEEecCCccceEEEecCCC---CcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 4457788864 45777776 789999863 24322111111 1222 223455445444333 34699999999999
Q ss_pred HHHHHHHHHCC----CCeEEEeCCCcchHhHHHHHHhc-CCCccEEEEcCCCcCCcce
Q 005155 367 EYLSDLLKQQG----IPHNVLNARPKYAAREAETVAQA-GRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 367 E~Ls~~L~~~g----i~~~vLnA~~~~~~~Ea~Iia~A-G~~G~VTIATnmAGRGTDI 419 (711)
+...+.|.+.. +...-|++.....++.+ +..-+ +.+-.|.+|||+|-=++=|
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r-vF~p~~~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVR-VFEPAPGGKRKVVLATNIAETSLTI 329 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHh-hcCCCCCCcceEEEEccccccceee
Confidence 99999999832 33444677644444443 33322 2222399999999765544
No 123
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.24 E-value=5.1e-05 Score=89.32 Aligned_cols=65 Identities=28% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|+|-|..-+- ++.+|+ ++|+.||.|||+.+++|+...+. .|+.|.|.|.|.-|-.|..++..|+
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 57777766553 445665 99999999999999999997776 4689999999999988888887775
No 124
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.22 E-value=1.8e-05 Score=92.97 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=82.8
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC-CH
Q 005155 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM-IP 83 (711)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~-~~ 83 (711)
-++-++|.++-|+-..||.|||.+|+..++ +-+ .+..|.+++|+.=|-.|....+...+.. -++....+++ ++
T Consensus 69 eivq~ALgkNtii~lPTG~GKTfIAa~Vm~-nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~ 145 (746)
T KOG0354|consen 69 ELVQPALGKNTIIALPTGSGKTFIAAVIMK-NHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPR 145 (746)
T ss_pred HHhHHhhcCCeEEEeecCCCccchHHHHHH-HHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCC
Confidence 466778866779999999999999998886 444 4557999999999988877666655543 4454555553 34
Q ss_pred HHHHhccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 84 ~~r~~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.-|...|. ++|.+.||-.+ ++.|.....+. +. .|-.+|+||||.-
T Consensus 146 ~~r~~i~~s~~vff~TpQil-----~ndL~~~~~~~-ls---~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 146 SNRGEIVASKRVFFRTPQIL-----ENDLKSGLHDE-LS---DFSLIVFDECHRT 191 (746)
T ss_pred CchhhhhcccceEEeChHhh-----hhhcccccccc-cc---eEEEEEEcccccc
Confidence 34445565 49999999877 33333221111 34 6899999999974
No 125
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.16 E-value=7e-06 Score=69.58 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=39.6
Q ss_pred HHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 371 DLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 371 ~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.|+..|+++..+|+++...+++..+-. +.| ...|+|||+++|+|+|++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEEeecccccccccc
Confidence 4688999999999998766666655544 555 559999999999999994
No 126
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.16 E-value=1.8e-05 Score=84.67 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCchhHHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----CEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 47888877 223455665 899999999999999999654443 43 7999999999988887777665
No 127
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.16 E-value=1.8e-05 Score=84.67 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCchhHHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----CEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 47888877 223455665 899999999999999999654443 43 7999999999988887777665
No 128
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.02 E-value=0.00013 Score=84.26 Aligned_cols=110 Identities=25% Similarity=0.264 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH-----HHHHHHHHHHHHHhhhcCCeEEEEc--C
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND-----YLAQRDAEWMERVHRFLGLSVGLIQ--R 79 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd-----yLA~RDae~~~~~y~~LGLtv~~i~--~ 79 (711)
|++..+.=++=-|+--.||+|||--.+=-+|.......|...+|--+ .+|+|-+++|+ --||=+||.-. .
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~---~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG---VTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC---CccccccceEEEee
Confidence 44444433333356667999999654443443344445655555443 57889999884 23444454322 1
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+.+. -..-|-|-|-|=| ||..+.. ..+. .+.++|+||||.
T Consensus 440 dvT~------~~T~IkymTDGiL----LrEsL~d----~~L~---kYSviImDEAHE 479 (1042)
T KOG0924|consen 440 DVTS------EDTKIKYMTDGIL----LRESLKD----RDLD---KYSVIIMDEAHE 479 (1042)
T ss_pred ecCC------CceeEEEeccchH----HHHHhhh----hhhh---heeEEEechhhh
Confidence 1111 1224889999876 6665553 2355 789999999996
No 129
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.00 E-value=2.5e-05 Score=65.15 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 368 YLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 368 ~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++.|.+.++++.++|+.+...+++..+..-......|.|+|+++|+|+|+.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~ 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLP 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChh
Confidence 57788889999999999976555555444443333559999999999999985
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.96 E-value=0.001 Score=79.02 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred hHHHHHH----HHhCCC---eEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 6 VQIIGGA----VLHDGS---IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 6 vQl~g~~----~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
-|+.++- ++++|+ +..|.||.|||-+|.-.++...=+| |.|..++=-..|-+|-.+.+..+.=+ |=.+..
T Consensus 169 yQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~~n~ 247 (875)
T COG4096 169 YQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-GTKMNK 247 (875)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-ccceee
Confidence 3554444 467888 9999999999988766665433344 68999999999999877765544322 222222
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcC-CCCCccEEEeechhhh
Q 005155 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR-WPKPFHFAIVDEVDSV 137 (711)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r-~~R~~~~aIVDEvDs~ 137 (711)
+... ...-.|.|..+|--.+. ....... .-..+ .|..|+++||||+|+=
T Consensus 248 i~~~------~~~~s~~i~lsTyqt~~-----~~~~~~~-~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 248 IEDK------KGDTSSEIYLSTYQTMT-----GRIEQKE-DEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred eecc------cCCcceeEEEeehHHHH-----hhhhccc-cccccCCCCceeEEEechhhhh
Confidence 2211 11126789999976652 2222220 11111 3346999999999974
No 131
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.86 E-value=0.00033 Score=81.14 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=69.9
Q ss_pred cccccCCcccHHHHHHHHcCC-CeEEeCCCCCcccccCCCeEEe---ChhHHHHHHHHHHHHhhhcCC--cEEEEecchh
Q 005155 291 LSGMTGTAKTEEKEFLKMFQM-PVIEVPTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGR--PVLVGSTSVE 364 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~l-~vv~IPt~~p~~R~d~~d~i~~---t~~~K~~aIi~ei~~~~~~gr--PVLV~t~Si~ 364 (711)
+.-||+|+. ++-|.+.|+- +++.||.-. +|..|+- ...+...+.+.-+...|.+-- =||||-+..+
T Consensus 198 lIimSATld--a~kfS~yF~~a~i~~i~GR~------fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 198 LIIMSATLD--AEKFSEYFNNAPILTIPGRT------FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEEEeeeec--HHHHHHHhcCCceEeecCCC------CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 445677774 4557776554 899999722 2333322 234566677777777774433 4999999999
Q ss_pred hHHHHHHHHHHC------CCCe--EEEeCCCcchHhHHHHHHhcCC--CccEEEEcCCCcC
Q 005155 365 NSEYLSDLLKQQ------GIPH--NVLNARPKYAAREAETVAQAGR--KYAITISTNMAGR 415 (711)
Q Consensus 365 ~SE~Ls~~L~~~------gi~~--~vLnA~~~~~~~Ea~Iia~AG~--~G~VTIATnmAGR 415 (711)
+.|...+.|.+. +.+. --+++.... .|..-|-.-.. .-.|.+|||+|-=
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~--e~Q~rvF~p~p~g~RKvIlsTNIAET 328 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPS--EEQSRVFDPAPPGKRKVILSTNIAET 328 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCH--HHhhccccCCCCCcceEEEEcceeee
Confidence 999999998774 2221 124554322 22222222111 3479999999964
No 132
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.71 E-value=0.00091 Score=77.44 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred cccccCCcccHHHHHHHHcC-CCeEEeCCCCCcccccCC-CeEEe--ChhHHHHHHHHHHHHhhhc--CCcEEEEecchh
Q 005155 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTNLPNIRVDLP-IQSFA--TARGKWEYARQEVESMFRL--GRPVLVGSTSVE 364 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~-l~vv~IPt~~p~~R~d~~-d~i~~--t~~~K~~aIi~ei~~~~~~--grPVLV~t~Si~ 364 (711)
|.-+|+|. .++.|...|+ .+|+.||..+ .| |..|. .+.+...|.+..|...|-. +--||||-.--+
T Consensus 413 llIsSAT~--DAekFS~fFDdapIF~iPGRR------yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 413 LLISSATM--DAEKFSAFFDDAPIFRIPGRR------YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred EEeecccc--CHHHHHHhccCCcEEeccCcc------cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 34455555 4577888886 4788999743 23 33343 3677888888888888732 233999998888
Q ss_pred hHHHHHHHHHHC----C--CC---eEEEeCCCcchHhHHHHHHhcCCCc--cEEEEcCCCcCCc
Q 005155 365 NSEYLSDLLKQQ----G--IP---HNVLNARPKYAAREAETVAQAGRKY--AITISTNMAGRGT 417 (711)
Q Consensus 365 ~SE~Ls~~L~~~----g--i~---~~vLnA~~~~~~~Ea~Iia~AG~~G--~VTIATnmAGRGT 417 (711)
+-|...+.|++. | ++ .--++|+. -..+..-|-+-.-+| .|.+|||+|-=-+
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNL--PselQakIFePtP~gaRKVVLATNIAETSl 546 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANL--PSELQAKIFEPTPPGARKVVLATNIAETSL 546 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccC--ChHHHHhhcCCCCCCceeEEEeecchhhce
Confidence 777776666542 2 11 12245642 123334444555454 6999999997443
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.0036 Score=74.70 Aligned_cols=97 Identities=27% Similarity=0.344 Sum_probs=75.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------C
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------R 91 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~ 91 (711)
+..--||+|||-+++=.+. .+| .|++|.|+.|-=.|--|-.+. |-..||.+|++..+++++.+|...+ .
T Consensus 221 Ll~GvTGSGKTEvYl~~i~-~~L~~GkqvLvLVPEI~Ltpq~~~r---f~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIA-KVLAQGKQVLVLVPEIALTPQLLAR---FKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred eEeCCCCCcHHHHHHHHHH-HHHHcCCEEEEEeccccchHHHHHH---HHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 8888999999998876665 556 799999999988887765444 5566779999999999988887543 4
Q ss_pred CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 92 ~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+.||.||-+-+ | .-.. ++..+||||=|.
T Consensus 297 ~~vVIGtRSAl-F-------------~Pf~---~LGLIIvDEEHD 324 (730)
T COG1198 297 ARVVIGTRSAL-F-------------LPFK---NLGLIIVDEEHD 324 (730)
T ss_pred ceEEEEechhh-c-------------Cchh---hccEEEEecccc
Confidence 68999998766 1 1133 788999999764
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.68 E-value=0.013 Score=69.37 Aligned_cols=343 Identities=20% Similarity=0.284 Sum_probs=184.1
Q ss_pred CCCchhHHHHHHHH-hC-CC--eEEecCCCcHHH-HHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 1 MRHFDVQIIGGAVL-HD-GS--IAEMKTGEGKTL-VSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 1 ~rp~dvQl~g~~~L-~~-G~--IaEm~TGEGKTL-va~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
||||.++=+-.++. ++ |- |.-=.-|=|||+ +.++.+|+....| .+-.|++|-.-|. .||..|-+|. +|
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~----NW~~Ef~rf~P~l 243 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD----NWMNEFKRFTPSL 243 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH----HHHHHHHHhCCCc
Confidence 67887776666653 33 32 444456999999 7888899877666 3567888888887 4999999998 78
Q ss_pred eEEEEcCCCC--HHHHHhccC---CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh------hhhc
Q 005155 73 SVGLIQRGMI--PEERRSNYR---CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------LIDE 141 (711)
Q Consensus 73 tv~~i~~~~~--~~~r~~aY~---~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~------LiDe 141 (711)
.|.+.+|+-. ...++..|. .||+.+|- |+ .|+|.-. +..- +-.|+||||+|++ |+-.
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsY-Ei---~i~dk~~-----lk~~---~W~ylvIDEaHRiKN~~s~L~~~ 311 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSY-EI---AIKDKSF-----LKKF---NWRYLVIDEAHRIKNEKSKLSKI 311 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehH-HH---HHhhHHH-----HhcC---CceEEEechhhhhcchhhHHHHH
Confidence 8888877632 222333443 48886663 32 3455211 1111 5679999999965 2221
Q ss_pred -----CCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHH
Q 005155 142 -----GRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (711)
Q Consensus 142 -----a~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~ 216 (711)
....|.|+|.+-.+ + ...+..+...+.++.+ . + .+..+..|...+..... .....+..
T Consensus 312 lr~f~~~nrLLlTGTPLQN-N-L~ELWaLLnFllPdiF-~-----------~--~e~F~swF~~~~~~~~~-e~v~~Lh~ 374 (971)
T KOG0385|consen 312 LREFKTDNRLLLTGTPLQN-N-LHELWALLNFLLPDIF-N-----------S--AEDFDSWFDFTNCEGDQ-ELVSRLHK 374 (971)
T ss_pred HHHhcccceeEeeCCcccc-c-HHHHHHHHHhhchhhc-c-----------C--HHHHHHHHcccccccCH-HHHHHHHh
Confidence 23447777754322 1 1233333343333211 0 0 11122222222111110 01111111
Q ss_pred HHHHHHH--hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeee-eehhHhhhcC----
Q 005155 217 ALKAKEF--YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQI-TYQSLFKLYP---- 289 (711)
Q Consensus 217 AL~A~~l--~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~I-s~q~~F~~Y~---- 289 (711)
.|+.-.| .+.|+. ..++...|-.....+ +.|. +-|.
T Consensus 375 vL~pFlLRR~K~dVe-----------------------------------~sLppKkE~~iyvgms~mQk--k~Y~~iL~ 417 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVE-----------------------------------KSLPPKKELIIYVGMSSMQK--KWYKAILM 417 (971)
T ss_pred hhhHHHHHHHHHhHh-----------------------------------hcCCCcceeeEeccchHHHH--HHHHHHHH
Confidence 1111010 011110 011111111111111 1110 0111
Q ss_pred -ccccccCCcccHHH-------HHHHHcCCCeE-----EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcE
Q 005155 290 -KLSGMTGTAKTEEK-------EFLKMFQMPVI-----EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPV 356 (711)
Q Consensus 290 -kl~GmTGTa~te~~-------Ef~~iY~l~vv-----~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPV 356 (711)
-|-++-|+-+.+.. .|++.-|-+.. ..||+.+ +.-..+...|+.-+=+.+...+++|..|
T Consensus 418 kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pytt-------dehLv~nSGKm~vLDkLL~~Lk~~GhRV 490 (971)
T KOG0385|consen 418 KDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTT-------DEHLVTNSGKMLVLDKLLPKLKEQGHRV 490 (971)
T ss_pred hcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCc-------chHHHhcCcceehHHHHHHHHHhCCCeE
Confidence 23333333322222 22333333321 1133222 2223455667765556677888999999
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCC---CccEEEEcCCCcCCccee
Q 005155 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR---KYAITISTNMAGRGTDII 420 (711)
Q Consensus 357 LV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~---~G~VTIATnmAGRGTDIk 420 (711)
|||..-...-+.|-+++--+|....-|.+...+.+|++.|-+---. .---.++|.-.|-|+...
T Consensus 491 LIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 491 LIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred EEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 9999999888999999999999999999988888888888773322 235678999999987643
No 135
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0011 Score=80.95 Aligned_cols=125 Identities=22% Similarity=0.184 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|-|-.++.+|-.|. ++...||.|||.|+=.+.++.-..|.+|.-.||-..|..|-+-++..-|.-.-=-+|+.+|+
T Consensus 120 LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 120 LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 5678999999998877 99999999999999999986566888999999999999987777666555441113444444
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.+. .-.+.+++-|- | +||.-+... .-.++ +..++|.||+|-|= |.-|
T Consensus 200 v~I-----N~~A~clvMTT-E----ILRnMlyrg--~~~~~---~i~~ViFDEvHyi~-D~eR 246 (1041)
T COG4581 200 VSI-----NPDAPCLVMTT-E----ILRNMLYRG--SESLR---DIEWVVFDEVHYIG-DRER 246 (1041)
T ss_pred eee-----CCCCceEEeeH-H----HHHHHhccC--ccccc---ccceEEEEeeeecc-cccc
Confidence 221 12344544444 4 577655544 34566 99999999999984 5533
No 136
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0067 Score=69.29 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.+|..|-++-++..-+|+|-|..+-|...--=.+-++=||... | |.........+..-++.+|....+++-.|||
T Consensus 377 L~feEf~~~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLl----D-P~ievRp~~~QvdDL~~EI~~r~~~~eRvLV 451 (663)
T COG0556 377 LKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLL----D-PEIEVRPTKGQVDDLLSEIRKRVAKNERVLV 451 (663)
T ss_pred CCHHHHHHhcCCEEEEECCCChHHHHhccCceeEEeecCCCCC----C-CceeeecCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 4566666666788889999987544433211112234476542 1 3333455566888899999999999999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (711)
-|-|+..||.|.++|.+.||+...||.+-+-.+| .+||. +.| .-.|.|--|+.--|.||.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER-~eIirdLR~G-~~DvLVGINLLREGLDiP 513 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLER-VEIIRDLRLG-EFDVLVGINLLREGLDLP 513 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHH-HHHHHHHhcC-CccEEEeehhhhccCCCc
Confidence 9999999999999999999999999996433332 35554 555 558999999999999994
No 137
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.53 E-value=0.0013 Score=79.74 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHH-H--HHHHHHHHHHcCCCEEEEecCH------HHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTL-V--STLAAYLNALTGEGVHVVTVND------YLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTL-v--a~Lpa~l~AL~G~~VhVvT~Nd------yLA~RDae~~~~~y~~LGLtv~~i 77 (711)
|++-++-=++=-|+-=.||.|||. + |.|-.+ .-.|..+-||+.-+ .+|+|-+.+- ...+|-+||..
T Consensus 180 ~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~--~~~~~~~~IicTQPRRIsAIsvAeRVa~ER---~~~~g~~VGYq 254 (924)
T KOG0920|consen 180 TILDAIEENQVVVISGETGCGKTTQVPQFILDEA--IESGAACNIICTQPRRISAISVAERVAKER---GESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH--HhcCCCCeEEecCCchHHHHHHHHHHHHHh---ccccCCeeeEE
Confidence 344444333444667789999995 3 333222 23456666766554 5888888775 67788888876
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-. ++.....-++|+|.|-| || .+.. +.+.. +...+||||||-=
T Consensus 255 vrl~----~~~s~~t~L~fcTtGvL----Lr-~L~~---~~~l~---~vthiivDEVHER 299 (924)
T KOG0920|consen 255 VRLE----SKRSRETRLLFCTTGVL----LR-RLQS---DPTLS---GVTHIIVDEVHER 299 (924)
T ss_pred Eeee----cccCCceeEEEecHHHH----HH-Hhcc---Ccccc---cCceeeeeeEEEc
Confidence 5432 22344467999999876 33 3332 23455 7889999999964
No 138
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.51 E-value=0.00025 Score=84.12 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=66.5
Q ss_pred CeEEecCCCcHHHHHHHHHHH--HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--hccCCC
Q 005155 18 SIAEMKTGEGKTLVSTLAAYL--NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR--SNYRCD 93 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~Lpa~l--~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~--~aY~~D 93 (711)
-+..|.||+|||++++..+.. ..+.+..|.|||+...|..|-.+.+..+.. -.+..+ +....-++ ....++
T Consensus 266 gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~---~~~~~~--~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 266 GLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK---DCAERI--ESIAELKRLLEKDDGG 340 (667)
T ss_pred eEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC---CCCccc--CCHHHHHHHHhCCCCC
Confidence 499999999999988777652 234567899999999999998887776532 111111 11111222 123478
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+++|..-|.- .+.+.+. .... .+...++||||||+.
T Consensus 341 iivtTiQk~~~-~~~~~~~----~~~~--~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 341 IIITTIQKFDK-KLKEEEE----KFPV--DRKEVVVIFDEAHRS 377 (667)
T ss_pred EEEEEhHHhhh-hHhhhhh----ccCC--CCCCEEEEEEcCccc
Confidence 99999887731 1111111 0001 113348999999974
No 139
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.49 E-value=0.00039 Score=81.21 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCC-EEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEG-VHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~-VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
|-|-.++.++-+|. ++-+.|-.|||.+|--+++ .+|..++ |.--+|=..|+.|-+.++..=|.-.||=+|-++-+
T Consensus 132 pFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn- 209 (1041)
T KOG0948|consen 132 PFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN- 209 (1041)
T ss_pred chHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC-
Confidence 45888888888777 9999999999999999887 7887764 55566778999988877776666666655533211
Q ss_pred CHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 82 IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 82 ~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
| .|.-.+-|- ..||.-+..+ .-++| ...++|.||+|-|- |.
T Consensus 210 -P-------~ASCLVMTT-----EILRsMLYRG--SEvmr---EVaWVIFDEIHYMR-Dk 250 (1041)
T KOG0948|consen 210 -P-------DASCLVMTT-----EILRSMLYRG--SEVMR---EVAWVIFDEIHYMR-DK 250 (1041)
T ss_pred -C-------CCceeeeHH-----HHHHHHHhcc--chHhh---eeeeEEeeeehhcc-cc
Confidence 1 111222232 2467766654 34677 99999999999995 54
No 140
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.33 E-value=0.0039 Score=73.65 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH-HCCCCeEEEeCCCcchHhHHHHHH-hcCCCccE-EE
Q 005155 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK-QQGIPHNVLNARPKYAAREAETVA-QAGRKYAI-TI 408 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~-~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~V-TI 408 (711)
......|...+...+...+++|..||+|+.|...-..|-..|. ..|+.+--+.+...-..|-.-|-. +++..-.| .+
T Consensus 525 ~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 525 DPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLL 604 (923)
T ss_pred ChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEE
Confidence 3445678888888999999999999999999999999999999 689999889886444444433333 55555544 56
Q ss_pred EcCCCcCCcce
Q 005155 409 STNMAGRGTDI 419 (711)
Q Consensus 409 ATnmAGRGTDI 419 (711)
.|..-|-|+..
T Consensus 605 TTrvGGLGlNL 615 (923)
T KOG0387|consen 605 TTRVGGLGLNL 615 (923)
T ss_pred Eeccccccccc
Confidence 77888888765
No 141
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.29 E-value=0.0017 Score=77.90 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCchhHHHHHH--HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGA--VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~--~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.+|+.|..+.- .+++|+ |--..|+-|||||+.+......| .++.|..+-|=-.-++--.+.|.+|..-+|+.|-.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 35777876654 344544 88999999999999999887776 56777777777777777788899999999999988
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
-.|..+|+-+++.- +|.++|...- .-|-+.+-.. --.. .+..++|||.|-+ +|..|
T Consensus 303 y~g~~~p~~~~k~~--sv~i~tiEka--nslin~lie~---g~~~---~~g~vvVdElhmi-~d~~r 358 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKRE--SVAIATIEKA--NSLINSLIEQ---GRLD---FLGMVVVDELHMI-GDKGR 358 (1008)
T ss_pred hcccCCCCCcccce--eeeeeehHhh--HhHHHHHHhc---CCcc---ccCcEEEeeeeee-ecccc
Confidence 88877776554432 4777775321 1122222111 0111 5678999998765 57643
No 142
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.62 E-value=0.0038 Score=60.75 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCC
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC 92 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~ 92 (711)
+|. +..+.+|.|||--.+--.+-.++ .+..|.|+.|++-+|+ +|.+-.+-++ +.+...-... ..+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~----em~~aL~~~~--~~~~t~~~~~----~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAE----EMYEALKGLP--VRFHTNARMR----THFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHH----HHHHHTTTSS--EEEESTTSS--------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHH----HHHHHHhcCC--cccCceeeec----cccCC
Confidence 455 78889999999743333333455 5779999999999987 5555555444 4333222111 23443
Q ss_pred -CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 93 -DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 93 -DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-|++-|-+-| ..|+.+ + .-.+ +++|+|+||+|..
T Consensus 73 ~~i~vMc~at~-~~~~~~-----p--~~~~---~yd~II~DEcH~~ 107 (148)
T PF07652_consen 73 SIIDVMCHATY-GHFLLN-----P--CRLK---NYDVIIMDECHFT 107 (148)
T ss_dssp SSEEEEEHHHH-HHHHHT-----S--SCTT---S-SEEEECTTT--
T ss_pred CcccccccHHH-HHHhcC-----c--cccc---CccEEEEeccccC
Confidence 4555555544 223322 1 1123 8999999999984
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.55 E-value=0.14 Score=58.45 Aligned_cols=321 Identities=15% Similarity=0.176 Sum_probs=168.9
Q ss_pred chhHHHHHH-HHhC-CC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE--EEEc
Q 005155 4 FDVQIIGGA-VLHD-GS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV--GLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~-~L~~-G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv--~~i~ 78 (711)
+|-|.-|.. +|.. |+ +.-=.-|=|||+-|...|++ --......||+|..-+ ..|-..+-+||+.-. -++.
T Consensus 200 lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y-yraEwplliVcPAsvr----ftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 200 LPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY-YRAEWPLLIVCPASVR----FTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH-HhhcCcEEEEecHHHh----HHHHHHHHHhcccccceEEEe
Confidence 567888877 4443 66 44445699999966555553 3456679999996544 468888889988543 3444
Q ss_pred CCCCHHHHHhccCC---CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc--------------
Q 005155 79 RGMIPEERRSNYRC---DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE-------------- 141 (711)
Q Consensus 79 ~~~~~~~r~~aY~~---DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe-------------- 141 (711)
.+.++ ..|-| -|.+.+ ++.|... .+.+..+ .+.++|+||.|-. =|.
T Consensus 275 ~~~D~----~~~~~t~~~v~ivS-----ye~ls~l----~~~l~~~---~~~vvI~DEsH~L-k~sktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 275 KSSDP----LPDVCTSNTVAIVS-----YEQLSLL----HDILKKE---KYRVVIFDESHML-KDSKTKRTKAATDLLKV 337 (689)
T ss_pred cccCC----ccccccCCeEEEEE-----HHHHHHH----HHHHhcc---cceEEEEechhhh-hccchhhhhhhhhHHHH
Confidence 44332 23333 233332 3333211 0112223 7999999999853 232
Q ss_pred CCCceeccCCC--CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCC---CC--chHHHH
Q 005155 142 GRNPLLISGEA--SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE---ND--PWARFV 214 (711)
Q Consensus 142 a~tPLiiSg~~--~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~---~~--~~~~~i 214 (711)
+.+-+.+||.+ +.++.+|.++..+-..|-++ . -|-|+..++--. ..-.|+. +| .+.-.+
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~-f------------~efa~rYCd~k~-vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPN-F------------HEFAIRYCDGKQ-VRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhccccccc-H------------HHHHHHhcCccc-cceeeecCCCCCHHHHHHHH
Confidence 33336689875 45677888876655444321 1 111222221000 0001111 12 122222
Q ss_pred HHHHHHHHHhccCcceEEe---CCeEEEEeCCCCccccccccChhhhHHHHh-Hh--CCccccCceeeeeeeehhHhhhc
Q 005155 215 MNALKAKEFYRRDVQYIVR---NGKALIINELTGRVEEKRRWSEGIHQAVEA-KE--GLKIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 215 ~~AL~A~~l~~~d~dYiV~---d~~IviVD~~TGR~~~gr~ws~GLHQaiEa-KE--gv~I~~es~t~a~Is~q~~F~~Y 288 (711)
..++.-+.+ + +-+.. ..+-.+|-..+||+-.-+. .++.+ +. .++.+..+
T Consensus 404 ~k~lMIRRl-K---~dvL~qLPpKrr~Vv~~~~gr~da~~~------~lv~~a~~~t~~~~~e~~--------------- 458 (689)
T KOG1000|consen 404 FKRLMIRRL-K---ADVLKQLPPKRREVVYVSGGRIDARMD------DLVKAAADYTKVNSMERK--------------- 458 (689)
T ss_pred HHHHHHHHH-H---HHHHhhCCccceEEEEEcCCccchHHH------HHHHHhhhcchhhhhhhh---------------
Confidence 333222222 1 11111 1122233344566654332 11111 11 11110000
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHH----hhhcCCcEEEEecchh
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES----MFRLGRPVLVGSTSVE 364 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~----~~~~grPVLV~t~Si~ 364 (711)
.+-+.-.|+ .+...|..++++.|.. .-+.++.+|||+.-..
T Consensus 459 -------------~~~l~l~y~----------------------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 459 -------------HESLLLFYS----------------------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred -------------hHHHHHHHH----------------------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 011122232 2234577788888877 4578899999999999
Q ss_pred hHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCC-CccEEEE---cCCCcCCcceecC
Q 005155 365 NSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR-KYAITIS---TNMAGRGTDIILG 422 (711)
Q Consensus 365 ~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~-~G~VTIA---TnmAGRGTDIkLg 422 (711)
--+.|...+.++++++--+++....++|+.-... .| .-.|-|| ---||=|.|+.-+
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qs--FQ~seev~VAvlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQS--FQTSEEVRVAVLSITAAGVGLTLTAA 563 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHH--hccccceEEEEEEEeecccceeeecc
Confidence 9999999999999999999997656666654433 22 2233333 3456777777644
No 144
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.50 E-value=0.58 Score=56.36 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HHhhhcCC--cEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc-cEEEEcC
Q 005155 337 GKWEYARQEV-ESMFRLGR--PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY-AITISTN 411 (711)
Q Consensus 337 ~K~~aIi~ei-~~~~~~gr--PVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G-~VTIATn 411 (711)
.|...+.+.+ ......|. +||||+.....-+.+...|...++++.-+++......+...|.. .++..- ...++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777776666 56778898 99999999999999999999999888899986443344433333 555222 3333333
Q ss_pred CCcCC
Q 005155 412 MAGRG 416 (711)
Q Consensus 412 mAGRG 416 (711)
-+|-|
T Consensus 772 agg~g 776 (866)
T COG0553 772 AGGLG 776 (866)
T ss_pred ccccc
Confidence 44433
No 145
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.40 E-value=0.013 Score=60.99 Aligned_cols=108 Identities=21% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCeEEecCCCcHHHHHHHHHH-HHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCCHHHHH-
Q 005155 17 GSIAEMKTGEGKTLVSTLAAY-LNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMIPEERR- 87 (711)
Q Consensus 17 G~IaEm~TGEGKTLva~Lpa~-l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~L---GLtv~~i~~~~~~~~r~- 87 (711)
|-|.--.+|.|||++++..+. +...... .+.||+|+.-+. .|...+.+++ .+.+....+.. ...+.
T Consensus 27 g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~----~W~~E~~~~~~~~~~~v~~~~~~~-~~~~~~ 101 (299)
T PF00176_consen 27 GGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS----QWKEEIEKWFDPDSLRVIIYDGDS-ERRRLS 101 (299)
T ss_dssp EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH----HHHHHHHHHSGT-TS-EEEESSSC-HHHHTT
T ss_pred CEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh----hhhhhhcccccccccccccccccc-cccccc
Confidence 447777899999987665553 3332222 499999995553 3666676666 56666665553 11111
Q ss_pred --hccCCCeEEECCCchhhHHHHHh-hhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 --SNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 --~aY~~DI~YgT~~elgfDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-..+|+..|-..+ +.. .....+..... +++++||||+|.+
T Consensus 102 ~~~~~~~~vvi~ty~~~-----~~~~~~~~~~~l~~~---~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETL-----RKARKKKDKEDLKQI---KWDRVIVDEAHRL 146 (299)
T ss_dssp SSSCCCSSEEEEEHHHH-----H--TSTHTTHHHHTS---EEEEEEETTGGGG
T ss_pred ccccccceeeecccccc-----ccccccccccccccc---cceeEEEeccccc
Confidence 123357888885443 300 00111122223 6899999999997
No 146
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.22 E-value=0.25 Score=59.52 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHHhhhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 334 TARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grP---VLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
+..+.-..|+++|.+.+..|.+ +.|.+++-..+..+.+.|.+.|||+.+..+.
T Consensus 325 ~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~ 380 (721)
T PRK11773 325 NELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGM 380 (721)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHHCCCCEEEECCC
Confidence 3444556788999888777743 8888999999999999999999999988664
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.14 E-value=0.029 Score=66.81 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHhccC------CCeE
Q 005155 24 TGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLIQRGMIPEERRSNYR------CDIT 95 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv~~i~~~~~~~~r~~aY~------~DI~ 95 (711)
+|+|||-+++=.+. .+| .|++|.|+.|.-.|..|-.+.+. ..|| -.|+...+++++.+|...|. ++|+
T Consensus 169 ~GSGKTevyl~~i~-~~l~~Gk~vLvLvPEi~lt~q~~~rl~---~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAA-ATLRAGRGALVVVPDQRDVDRLEAALR---ALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHH-HHHHcCCeEEEEecchhhHHHHHHHHH---HHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 69999999877765 455 69999999999999997666555 5556 78999999999999887763 5899
Q ss_pred EECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+||=+-+ | .-.. ++..+||||=|.
T Consensus 245 iGtRSAv-F-------------aP~~---~LgLIIvdEEhd 268 (665)
T PRK14873 245 VGTRSAV-F-------------APVE---DLGLVAIWDDGD 268 (665)
T ss_pred EEcceeE-E-------------eccC---CCCEEEEEcCCc
Confidence 9997765 1 1123 678888887654
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.97 E-value=0.38 Score=59.89 Aligned_cols=335 Identities=19% Similarity=0.282 Sum_probs=171.6
Q ss_pred eEEecCCCcHHH-HHHHHHH-HHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeE
Q 005155 19 IAEMKTGEGKTL-VSTLAAY-LNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDIT 95 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~-l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~ 95 (711)
|.-=.-|=|||+ +.++..| .+.+. -.+..||+|=.+++. |-+.|-.+..+.+.+..|+....+-...|. .+
T Consensus 393 ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~----W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye--~~ 466 (1373)
T KOG0384|consen 393 ILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA----WEREFETWTDMNVIVYHGNLESRQLIRQYE--FY 466 (1373)
T ss_pred eehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH----HHHHHHHHhhhceeeeecchhHHHHHHHHH--he
Confidence 554556999998 4444444 34442 235778888777764 999999999999999888876544444454 34
Q ss_pred EECC-CchhhHHHHHhhhcc-hhhhhcCCCCCccEEEeechhhhhhhc-----------CCCceeccCCCCCCccchHHH
Q 005155 96 YTNN-SELGFDYLRDNLAAN-SEQLVMRWPKPFHFAIVDEVDSVLIDE-----------GRNPLLISGEASKDVARYPVA 162 (711)
Q Consensus 96 YgT~-~elgfDyLrD~l~~~-~~~~v~r~~R~~~~aIVDEvDs~LiDe-----------a~tPLiiSg~~~~~~~~y~~~ 162 (711)
+..+ +.+.|+-|..-+..- ++..+++ .=+..|++|||||+.=-++ -.+-|.|+|.+-.++ ...+
T Consensus 467 ~~~~~~~lkf~~lltTye~~LkDk~~L~-~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNs--ikEL 543 (1373)
T KOG0384|consen 467 HSSNTKKLKFNALLTTYEIVLKDKAELS-KIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNS--LKEL 543 (1373)
T ss_pred ecCCccccccceeehhhHHHhccHhhhc-cCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCcccc--HHHH
Confidence 4442 344455443222111 0112332 1156799999999864333 234466777543321 1223
Q ss_pred HHHHHHcccCCCeEEeCC--CCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 163 AKVAELLVQGLHYTVELK--NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 163 ~~i~~~l~~~~~y~~d~~--~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
..++..+.++.+...++= +. -.-|+.|+..+...|. .++. +. +++|+.
T Consensus 544 ~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~------------P~~l-----Rr-~kkdve----------- 593 (1373)
T KOG0384|consen 544 WSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILK------------PFLL-----RR-LKKDVE----------- 593 (1373)
T ss_pred HHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhh------------HHHH-----HH-HHhhhc-----------
Confidence 333333433321111100 00 0123333333322211 1111 11 122321
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeee-ehh-Hh-----hhcCcc-ccccCCccc---HHHHHHHHc
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQIT-YQS-LF-----KLYPKL-SGMTGTAKT---EEKEFLKMF 309 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is-~q~-~F-----~~Y~kl-~GmTGTa~t---e~~Ef~~iY 309 (711)
..++..+|+..-..+| .|. |+ |.|.-| -|..|+.-+ -.-||.+--
T Consensus 594 ------------------------kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKcc 649 (1373)
T KOG0384|consen 594 ------------------------KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCC 649 (1373)
T ss_pred ------------------------cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhc
Confidence 1122222221111111 121 11 223222 233344322 345666666
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHH----------HHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQ----------EVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~----------ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
|-++..=|.- .....+..+ ...+..+.++|. .+-+..+.|-.||||..-+..-+.|+++|..+|+|
T Consensus 650 NHpyLi~gae-e~~~~~~~~---~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~yp 725 (1373)
T KOG0384|consen 650 NHPYLIKGAE-EKILGDFRD---KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYP 725 (1373)
T ss_pred CCccccCcHH-HHHHHhhhh---cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCc
Confidence 6555432221 111111111 002334444432 23344578899999999999999999999999999
Q ss_pred eEEEeCCCcchHhHHHHHH-hc--CCCccEEEEcCCCcCCccee
Q 005155 380 HNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 380 ~~vLnA~~~~~~~Ea~Iia-~A--G~~G~VTIATnmAGRGTDIk 420 (711)
++-|.+..+-.-|-+.|-. .| -.--.-+++|.--|-|+...
T Consensus 726 fQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 726 FQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred ceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 9999997655556666654 22 11225789999999997643
No 149
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.42 E-value=0.25 Score=51.69 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhC-----CCeEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEE
Q 005155 5 DVQIIGGAVLHD-----GSIAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLI 77 (711)
Q Consensus 5 dvQl~g~~~L~~-----G~IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~~i 77 (711)
++|.--+..|.+ +.+.||.+|||||-|. +|++..+| .|...-.+.+=.-|.++-++-+..-+ ..+|=.+-.+
T Consensus 26 ~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 26 PVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 456655555543 4599999999999764 34444455 56565556666778888877765443 4556666554
Q ss_pred cC----CCCHHH----HH---hc-cCCCeEEECCCchh------hHHHHHhhhcchh-----hhhcCCCCCccEEEeech
Q 005155 78 QR----GMIPEE----RR---SN-YRCDITYTNNSELG------FDYLRDNLAANSE-----QLVMRWPKPFHFAIVDEV 134 (711)
Q Consensus 78 ~~----~~~~~~----r~---~a-Y~~DI~YgT~~elg------fDyLrD~l~~~~~-----~~v~r~~R~~~~aIVDEv 134 (711)
.= ..+++. ++ .+ -...|+.+||..+- .+.+.|.-..... ...+. ....-|+||.
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~---~~~rdilDEs 181 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD---EHSRDILDES 181 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hcCCeEeECc
Confidence 32 122221 11 01 13489999998762 2222111100000 11112 3344799999
Q ss_pred hhhhhhcCCCceeccCC
Q 005155 135 DSVLIDEGRNPLLISGE 151 (711)
Q Consensus 135 Ds~LiDea~tPLiiSg~ 151 (711)
|.+|- .++-||.+..
T Consensus 182 De~L~--~k~qLiY~~G 196 (229)
T PF12340_consen 182 DEILS--VKYQLIYTMG 196 (229)
T ss_pred hhccC--cceEEEecCC
Confidence 99984 7888988643
No 150
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.04 E-value=3.2 Score=50.15 Aligned_cols=104 Identities=24% Similarity=0.208 Sum_probs=67.6
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~--G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
-|-|.-++-. ..|. ++-..-|+|||-|.+--+. +-+. | ..+.++|.|.-.|.--.+.+ .+.+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl---~~~~~~~---- 76 (715)
T TIGR01075 6 NDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVENASPHSIMAVTFTNKAAAEMRHRI---GALLGTS---- 76 (715)
T ss_pred CHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCCCCHHHeEeeeccHHHHHHHHHHH---HHHhccc----
Confidence 3556655432 3466 8888999999987665554 2232 3 47899999999887444433 3444421
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|++..||.+... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TfHs~~~~iLr~~~~~----~g~----~~~f~i~d~~d~~ 115 (715)
T TIGR01075 77 -------------ARGMWIGTFHGLAHRLLRAHHLD----AGL----PQDFQILDSDDQL 115 (715)
T ss_pred -------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeecCHHHHH
Confidence 12578899999999999875321 111 3457789998864
No 151
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=94.89 E-value=0.55 Score=57.32 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
.-|-.++.+|..|. .+-+.|-.|||+||=-++++.--.|.+..--+|=..|..|-+-+|+.-|.--| +++|+..
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq 375 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ 375 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee
Confidence 46999999999998 88899999999999888887666777777788888999998888888887666 4555521
Q ss_pred HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 83 PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 83 ~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
..=.|.+++-|- ..||..+..+ .-+.| .+.|+|.||||-| -|.-|
T Consensus 376 -----inPeAsCLIMTT-----EILRsMLYrg--adliR---DvE~VIFDEVHYi-ND~eR 420 (1248)
T KOG0947|consen 376 -----INPEASCLIMTT-----EILRSMLYRG--ADLIR---DVEFVIFDEVHYI-NDVER 420 (1248)
T ss_pred -----eCCCcceEeehH-----HHHHHHHhcc--cchhh---ccceEEEeeeeec-ccccc
Confidence 112344666664 2467666554 23567 9999999999987 35544
No 152
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.37 E-value=2.4 Score=51.24 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=67.2
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~--G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
-|-|.-++-. .+|. ++-..-|+|||-|.+--+. +.+. | ..+.++|.|.--|..-.+.+. +.+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~---~~~~~~---- 76 (726)
T TIGR01073 6 NPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEKNVAPWNILAITFTNKAAREMKERVE---KLLGPV---- 76 (726)
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcCCCCHHHeeeeeccHHHHHHHHHHHH---HHhccc----
Confidence 4567666543 3566 8889999999988776654 2232 2 469999999877764333333 333310
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|+...||..... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TFHs~~~~iLr~~~~~------~g~--~~~f~i~d~~~~~ 115 (726)
T TIGR01073 77 -------------AEDIWISTFHSMCVRILRRDIDR------IGI--NRNFSIIDPTDQL 115 (726)
T ss_pred -------------cCCcEEEcHHHHHHHHHHHHHHH------hCC--CCCCCcCCHHHHH
Confidence 13588999999999999875321 111 3456789998853
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.96 E-value=2.5 Score=51.43 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=53.5
Q ss_pred HHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 346 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 346 i~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
+......|.-|-||++|+..++.+++.....+-..-++|++.+.. ++ +-...-+|.|=|-.-.=|.++.
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv--~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DV--ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cc--ccccceeEEEEeceEEEEeccc
Confidence 333446889999999999999999999988877777888853322 33 2355778999999999999874
No 154
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=93.95 E-value=0.14 Score=61.06 Aligned_cols=130 Identities=27% Similarity=0.435 Sum_probs=84.7
Q ss_pred hhHHHHHHH---Hh----CCCeEEecCCCcHHH-HHHHHHHHHHHcCCCEE-EEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 5 DVQIIGGAV---LH----DGSIAEMKTGEGKTL-VSTLAAYLNALTGEGVH-VVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 5 dvQl~g~~~---L~----~G~IaEm~TGEGKTL-va~Lpa~l~AL~G~~Vh-VvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
|-|++|+=- |+ +| |.-=.-|=|||. |.++.+||.-..-.|-| ||+|+.-|- .|.+.|-+|. .|+|
T Consensus 402 dYQlvGvNWL~Llyk~~l~g-ILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle----NWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 402 DYQLVGVNWLLLLYKKKLNG-ILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE----NWLREFAKWCPSLKV 476 (941)
T ss_pred chhhhhHHHHHHHHHccccc-eehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH----HHHHHHHHhCCceEE
Confidence 558888753 33 34 444456999998 77888887766555655 678888776 5999999999 5788
Q ss_pred EEEcCCCCHHHHHhc--------cCCCeEEECCCchhhHHHHHhhhcchhh-hhcCCCCCccEEEeechhhhhhhc----
Q 005155 75 GLIQRGMIPEERRSN--------YRCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDE---- 141 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a--------Y~~DI~YgT~~elgfDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDs~LiDe---- 141 (711)
-..+|.. ++|++. -.-||+..|=.=+ ..++++ .++| ..+|+|+|.||.|-. =+.
T Consensus 477 e~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la---------~~~kdDRsflk-~~~~n~viyDEgHmL-KN~~SeR 543 (941)
T KOG0389|consen 477 EPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLA---------ASSKDDRSFLK-NQKFNYVIYDEGHML-KNRTSER 543 (941)
T ss_pred EeccCcH--HHHHHHHHHHhccCCCccEEEEEeecc---------cCChHHHHHHH-hccccEEEecchhhh-hccchHH
Confidence 7777664 333321 1347887774322 122333 2443 337999999999842 222
Q ss_pred --------CCCceeccCCC
Q 005155 142 --------GRNPLLISGEA 152 (711)
Q Consensus 142 --------a~tPLiiSg~~ 152 (711)
|+.-|.++|.+
T Consensus 544 y~~LM~I~An~RlLLTGTP 562 (941)
T KOG0389|consen 544 YKHLMSINANFRLLLTGTP 562 (941)
T ss_pred HHHhccccccceEEeeCCc
Confidence 56667788854
No 155
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.47 E-value=4.5 Score=48.62 Aligned_cols=108 Identities=27% Similarity=0.313 Sum_probs=69.8
Q ss_pred CCCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH--cC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL--TG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL--~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
|+.-+-|.-++-. ..|. ++-..-|+|||.|.+--+. +-+ .| ..+.++|.|+--|.--.+ .+-..+|-..
T Consensus 1 ~~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~~v~p~~IL~lTFT~kAA~em~~---Rl~~~l~~~~ 75 (672)
T PRK10919 1 MRLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIA-HLIRGCGYQARHIAAVTFTNKAAREMKE---RVAQTLGRKE 75 (672)
T ss_pred CCCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCHHHeeeEechHHHHHHHHH---HHHHHhCccc
Confidence 4566778776543 2566 7888999999987666554 223 23 469999999998873333 3334444210
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...|.++|...|.+..|+..... .-. +.+|-|+|+.|..
T Consensus 76 ----------------~~~v~i~TfHS~~~~iLr~~~~~----~g~----~~~~~i~d~~~~~ 114 (672)
T PRK10919 76 ----------------ARGLMISTFHTLGLDIIKREYAA----LGM----KSNFSLFDDTDQL 114 (672)
T ss_pred ----------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeeCCHHHHH
Confidence 12488899999999999874321 111 2357789988763
No 156
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.30 E-value=0.25 Score=54.25 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=35.6
Q ss_pred EEecCCCcHHHHHHHHHHHH--HHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 20 AEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
++=.-|+|||+++.-.+... .-.+..+.++|+|.-|..--.+.+..-+
T Consensus 6 I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 44457999999887766643 4578899999999999886666655444
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.07 E-value=0.13 Score=47.16 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=25.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
++-=.+|.|||.++---+.-... ......++..+---...-......+.+.+|..
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 45567999999754443331111 11134443322221112234466777777755
No 158
>PRK10536 hypothetical protein; Provisional
Probab=92.95 E-value=1.4 Score=47.07 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=40.1
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHH-------------HHHHHHHHHHHHhhh
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY-------------LAQRDAEWMERVHRF 69 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~Ndy-------------LA~RDae~~~~~y~~ 69 (711)
.|....-+|.++. ++.=.+|+|||+.+...++ .+| .+.---|+-++.. +.+--.-||.|+|+.
T Consensus 63 ~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~-~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~ 141 (262)
T PRK10536 63 AQAHYLKAIESKQLIFATGEAGCGKTWISAAKAA-EALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDV 141 (262)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH-HHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHH
Confidence 3444444566666 5566899999987766664 455 4432223333333 345556788888887
Q ss_pred cCC
Q 005155 70 LGL 72 (711)
Q Consensus 70 LGL 72 (711)
|.-
T Consensus 142 L~~ 144 (262)
T PRK10536 142 LVR 144 (262)
T ss_pred HHH
Confidence 743
No 159
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.67 E-value=0.36 Score=54.25 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=38.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 20 AEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.-=.||.|||.+++=.|....+ .|+.|+++|.+.|=+. -.+++..+.+.+|+.+.+
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~ 238 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA 238 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe
Confidence 3447999999875544432333 4789999999998333 345577777778887653
No 160
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.60 E-value=0.12 Score=64.33 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=78.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHH-HHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE-WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae-~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Yg 97 (711)
++-..||+|||.+|=++.. +--.-..++=++|+...|..-+. |-+.|-..+|+.+.-..|.. ....+..-..+|.++
T Consensus 1163 ~vga~~gsgkt~~ae~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQKGQVIIS 1240 (1674)
T ss_pred EEecCCCCchhHHHHHHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhhhcceEEe
Confidence 8889999999999887764 42233368889999999987765 67788888999988776654 345666777899999
Q ss_pred CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 98 T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
||.. ||.|+ -+| ..++-|+||.|-+
T Consensus 1241 tpe~--~d~lq---------~iQ----~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1241 TPEQ--WDLLQ---------SIQ----QVDLFIVDELHLI 1265 (1674)
T ss_pred chhH--HHHHh---------hhh----hcceEeeehhhhh
Confidence 9987 56663 234 6889999999875
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=92.34 E-value=0.46 Score=58.75 Aligned_cols=37 Identities=32% Similarity=0.305 Sum_probs=25.9
Q ss_pred eEEecCCCcHHHHHHHHHH-HHHHcCCC-EEEEecCHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAY-LNALTGEG-VHVVTVNDYL 55 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~-l~AL~G~~-VhVvT~NdyL 55 (711)
..+|.||+|||.|++-.++ |+...|.. +.|++|+...
T Consensus 63 ~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI 101 (986)
T PRK15483 63 DIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAI 101 (986)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 6899999999998765544 45555654 5666666443
No 162
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=91.87 E-value=0.11 Score=59.23 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=74.7
Q ss_pred hHHHHHHHHh-CCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 6 VQIIGGAVLH-DGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 6 vQl~g~~~L~-~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
-|-.+.--|+ +|+ |+-..-|.|||||-+-++. --.+.|.|++.|..=.. +|-.+|..|-.+.-..+..=
T Consensus 306 YQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVe---QWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 306 YQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVE---QWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred hHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHH---HHHHHHHhhcccCccceEEe
Confidence 3666666555 566 8899999999998655543 34678999998876665 47777777766654333211
Q ss_pred CCHHHH-HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcC--CCCCccEEEeechhhh
Q 005155 81 MIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR--WPKPFHFAIVDEVDSV 137 (711)
Q Consensus 81 ~~~~~r-~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r--~~R~~~~aIVDEvDs~ 137 (711)
+.+.+ +.--+|+|++.|-+=+++--=|..= .+.++. ..|.-.++|+||||.|
T Consensus 380 -Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~e----aek~m~~l~~~EWGllllDEVHvv 434 (776)
T KOG1123|consen 380 -TSDAKERFPSGAGVVVTTYSMVAYTGKRSHE----AEKIMDFLRGREWGLLLLDEVHVV 434 (776)
T ss_pred -eccccccCCCCCcEEEEeeehhhhcccccHH----HHHHHHHHhcCeeeeEEeehhccc
Confidence 11111 1335789999997765432111110 111111 1347889999999987
No 163
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.78 E-value=0.42 Score=57.53 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=78.2
Q ss_pred hhHhhhcCccccccCCcccHHHHHHHHcCCCeE--EeCCC-CCccc------ccCCC-----eEEe--ChhHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI--EVPTN-LPNIR------VDLPI-----QSFA--TARGKWEYARQE 345 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv--~IPt~-~p~~R------~d~~d-----~i~~--t~~~K~~aIi~e 345 (711)
+.++.....+.-|+||+..- +.|.+..|++.. ..++| .|..+ .+.|+ .-|. +..+-+..+.+.
T Consensus 435 ~~i~~~~~svil~SgTL~p~-~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~ 513 (705)
T TIGR00604 435 KPLFERVRSVILASGTLSPL-DAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGEL 513 (705)
T ss_pred HHHHHhcCEEEEecccCCcH-HHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHH
Confidence 45667778899999999763 346677776422 12222 12110 01111 1121 123345566666
Q ss_pred HHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCC------eEEEeCCCcchHhHHHHHH--hc--CCCccEEEEc--CC
Q 005155 346 VESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP------HNVLNARPKYAAREAETVA--QA--GRKYAITIST--NM 412 (711)
Q Consensus 346 i~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~------~~vLnA~~~~~~~Ea~Iia--~A--G~~G~VTIAT--nm 412 (711)
|.+..+ ..-.+|||++|-..-+.+.+.+.+.|+. ..++--...-.+.+.-+-. ++ ...|+|..|+ .-
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk 593 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGK 593 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 655543 4567999999999999999888876531 1233221111122322211 11 1268899999 78
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
..=|+|+.
T Consensus 594 ~sEGIDf~ 601 (705)
T TIGR00604 594 VSEGIDFC 601 (705)
T ss_pred ccCccccC
Confidence 89999997
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=91.51 E-value=0.81 Score=57.07 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=71.2
Q ss_pred CeEEecCCCcHHHHHHHHHHHH-HH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc--CCC
Q 005155 18 SIAEMKTGEGKTLVSTLAAYLN-AL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY--RCD 93 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~Lpa~l~-AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY--~~D 93 (711)
-++.=-||+|||++....|-+. .+ .-..|.+||==..|-.|-.+.+..+-....... ......+-|+..- ...
T Consensus 276 G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 276 GYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGKGK 352 (962)
T ss_pred eEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCCCc
Confidence 3888899999999877666532 22 345799999999999999998888877665544 2222233333322 247
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+++|.--|.+.-.-+ ......+ .--++|+||||+-
T Consensus 353 ii~TTIQKf~~~~~~~-----~~~~~~~---~~ivvI~DEaHRS 388 (962)
T COG0610 353 IIVTTIQKFNKAVKED-----ELELLKR---KNVVVIIDEAHRS 388 (962)
T ss_pred EEEEEecccchhhhcc-----cccccCC---CcEEEEEechhhc
Confidence 9999988774322211 0011233 6778999999973
No 165
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=91.06 E-value=0.69 Score=57.76 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=73.3
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--
Q 005155 19 IAEMKTGEGKTLV-STLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-- 87 (711)
Q Consensus 19 IaEm~TGEGKTLv-a~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~-- 87 (711)
|..=.-|=||||- ..+.|-=+... -.++.|||| ..|+-.=..++.+|+-| |+|..-+|. |.+|.
T Consensus 998 ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg~--p~~r~~l 1072 (1549)
T KOG0392|consen 998 ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVGP--PAERREL 1072 (1549)
T ss_pred eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHhcch--hhhhhhcCC--hHHHHHH
Confidence 5556779999994 33333323333 136899999 56888877888888888 444433332 44443
Q ss_pred -hcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh-----------cCCCceeccCCC
Q 005155 88 -SNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-----------EGRNPLLISGEA 152 (711)
Q Consensus 88 -~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD-----------ea~tPLiiSg~~ 152 (711)
..| ++||++..= |-+|+-. +..+.. ..+|||+||-|.|=-- -|.+-||+||.+
T Consensus 1073 R~q~~~~~iiVtSY-----Dv~RnD~----d~l~~~---~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTP 1138 (1549)
T KOG0392|consen 1073 RDQYKNANIIVTSY-----DVVRNDV----DYLIKI---DWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTP 1138 (1549)
T ss_pred HhhccccceEEeeH-----HHHHHHH----HHHHhc---ccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCC
Confidence 234 568887763 3344221 123445 8999999999975211 156679999964
No 166
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=90.69 E-value=2.2 Score=50.92 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+-|..+....+.. .+++=..|+|||-+.+-.+......|..|.|++|+..-+..-.+.+..
T Consensus 160 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 160 ESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4577777666543 278888999999765544442334789999999998777766665543
No 167
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.35 E-value=0.65 Score=53.17 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=91.5
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC-CCeE
Q 005155 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ-MPVI 314 (711)
Q Consensus 236 ~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~-l~vv 314 (711)
+|+|.|+..-|....-..-+=|.+.+..+-.+ |+.-||.|+. +.-|+..|+ .+++
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rpdL----------------------k~vvmSatl~--a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRPDL----------------------KLVVMSATLD--AEKFQRYFGNAPLL 216 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCCCc----------------------eEEEeecccc--hHHHHHHhCCCCee
Confidence 56788876555554333333344444444332 4567888874 456887775 5799
Q ss_pred EeCCCCCcccccCCCeEEeC--hhHHHHHHHHHHHHhhhcCCc--EEEEecchhhHHHHHHHHHHC-------CCCeEEE
Q 005155 315 EVPTNLPNIRVDLPIQSFAT--ARGKWEYARQEVESMFRLGRP--VLVGSTSVENSEYLSDLLKQQ-------GIPHNVL 383 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t--~~~K~~aIi~ei~~~~~~grP--VLV~t~Si~~SE~Ls~~L~~~-------gi~~~vL 383 (711)
.||.-.|+-+ +|.. +.+.++|.+..|.+.|..+-| ||||-..-++.|...+.+..+ +-+..|+
T Consensus 217 ~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 217 AVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred ecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 9997555533 3443 456778999999999876666 999999999888777766643 2233333
Q ss_pred eCCCcchHh--HHHHHHhcCCCc-cEEEEcCCCcC
Q 005155 384 NARPKYAAR--EAETVAQAGRKY-AITISTNMAGR 415 (711)
Q Consensus 384 nA~~~~~~~--Ea~Iia~AG~~G-~VTIATnmAGR 415 (711)
--.|++..+ |..=...-|..| .|.|+||+|-=
T Consensus 291 PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 291 PLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred ecCchhhccccCCCCcccCCCccceEEEEecchhe
Confidence 222323222 222122334444 69999999863
No 168
>PF13245 AAA_19: Part of AAA domain
Probab=89.97 E-value=1.3 Score=38.26 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=33.2
Q ss_pred eEEecCCCcHH-HHHHHHHHHHH-Hc--CCCEEEEecCHHHHHHHHHHH
Q 005155 19 IAEMKTGEGKT-LVSTLAAYLNA-LT--GEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 19 IaEm~TGEGKT-Lva~Lpa~l~A-L~--G~~VhVvT~NdyLA~RDae~~ 63 (711)
+++-.-|+||| +++-+.+++.+ .. |+.|.|+|+|...+.+-.+.+
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45899999999 44444444322 11 889999999999999877776
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.82 E-value=0.97 Score=45.96 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=40.3
Q ss_pred cCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 23 ~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
.||.|||-+ +=|+++ ..+.|+.|-++|.-.|=+- -.++++.+.+.+|+.+.......+
T Consensus 9 ptGvGKTTt~aKLAa~-~~~~~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~~~ 67 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAAR-LKLKGKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTESD 67 (196)
T ss_dssp STTSSHHHHHHHHHHH-HHHTT--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTTSC
T ss_pred CCCCchHhHHHHHHHH-HhhccccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcchh
Confidence 599999875 556665 5666999999998655322 347888899999999876544433
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.82 E-value=1.4 Score=44.52 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=37.4
Q ss_pred hhHHHHHHHHh-CC-C--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Q 005155 5 DVQIIGGAVLH-DG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW 62 (711)
Q Consensus 5 dvQl~g~~~L~-~G-~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~ 62 (711)
+-|.-+.-.++ .+ + +.+=.-|.|||-+....+-...-.|..|.+++|+.-.|.+-.+.
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 44666666554 44 2 67789999999653332222233689999999999988875444
No 171
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.26 E-value=1.9 Score=46.14 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=36.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
=.||+|||-+++-.|...+-.|+.|.+++...|=+ ...+++....+..|+.+-
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~-~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA-AAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH-HHHHHHHHHHHhCCeEEE
Confidence 48999999765554444567899999999765422 224566667777786644
No 172
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.21 E-value=3 Score=47.65 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=53.9
Q ss_pred cCCCcHHHHHH-HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccCCC-
Q 005155 23 KTGEGKTLVST-LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYRCD- 93 (711)
Q Consensus 23 ~TGEGKTLva~-Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~------~aY~~D- 93 (711)
.+|.|||-+++ |+++ ..-.|+.|.+|+.-.|=+ --.+|++..-+..|+.+-......+|.. .+ ..-.+|
T Consensus 108 ~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~Dv 185 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDI 185 (429)
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCE
Confidence 59999986544 5554 457799999999876654 3446777777888888766555444411 11 112466
Q ss_pred eEEECCCchhhH
Q 005155 94 ITYTNNSELGFD 105 (711)
Q Consensus 94 I~YgT~~elgfD 105 (711)
|++=|+|++..|
T Consensus 186 ViIDTaGr~~~d 197 (429)
T TIGR01425 186 IIVDTSGRHKQE 197 (429)
T ss_pred EEEECCCCCcch
Confidence 667789988765
No 173
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=89.00 E-value=14 Score=45.22 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=58.2
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHH-HHcC------CC-EEEEecCH----HHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLN-ALTG------EG-VHVVTVND----YLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~-AL~G------~~-VhVvT~Nd----yLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
++.+- |+.=.||+|||-- +|-+|. |=.| .+ +.|--|-+ ..|+|-+.+++. ||=.|+....
T Consensus 268 In~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~----~~~eVsYqIR 341 (1172)
T KOG0926|consen 268 INENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV----LGSEVSYQIR 341 (1172)
T ss_pred hhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc----CccceeEEEE
Confidence 34444 7788999999964 344432 2211 12 33333333 467888888775 5666665331
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
= +....-...|-+-|-|=| ||. |.. +..++ .+.++||||||.
T Consensus 342 f----d~ti~e~T~IkFMTDGVL----LrE-i~~---DflL~---kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 342 F----DGTIGEDTSIKFMTDGVL----LRE-IEN---DFLLT---KYSVIILDEAHE 383 (1172)
T ss_pred e----ccccCCCceeEEecchHH----HHH-HHH---hHhhh---hceeEEechhhh
Confidence 0 000111235888888755 443 332 45666 899999999995
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=88.60 E-value=2.5 Score=51.88 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHhccCC-CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh------------hhcCCCceecc--C
Q 005155 86 RRSNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL------------IDEGRNPLLIS--G 150 (711)
Q Consensus 86 r~~aY~~-DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L------------iDea~tPLiiS--g 150 (711)
|++.|.. .|+.+|+.=+.-|.|...+.- . .+.-+||||||++. -+.+..|+|.+ .
T Consensus 1 R~~ly~~ggi~~~T~rIl~~DlL~~ri~~-------~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSd 70 (814)
T TIGR00596 1 REKVYLEGGIFSITSRILVVDLLTGIIPP-------E---LITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSD 70 (814)
T ss_pred ChhHhhcCCEEEEechhhHhHHhcCCCCH-------H---HccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecC
Confidence 3456765 899999999988888765432 2 67789999999863 23366777753 3
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
.+..-..-|..+..+.+.|-
T Consensus 71 sP~~~~~g~~~l~~vmk~L~ 90 (814)
T TIGR00596 71 NPEAFTMGFSPLETKMRNLF 90 (814)
T ss_pred CCcccccchHHHHHHHHHhC
Confidence 33322234556667766663
No 175
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=88.43 E-value=1.7 Score=53.42 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred hhHHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC-
Q 005155 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG- 80 (711)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~- 80 (711)
..|.-|+.-.|.- .++.=.-|+|||-+....+=+....|+.|.+.+.+-.=.-...-.+.+ +|+...-+-.+
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEE 747 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc----cCcceeecCCcc
Confidence 3566676644422 266667899999776666655678999999988875433322222222 22222111111
Q ss_pred -CCHHHHH----------------hccC-CCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhhhhc
Q 005155 81 -MIPEERR----------------SNYR-CDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 81 -~~~~~r~----------------~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
.-|+.++ ..|+ ..||-+|-=-+. +.+ +.| .|+|||||||=.|+.--
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------------~plf~~R---~FD~cIiDEASQI~lP~ 812 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------------HPLFVNR---QFDYCIIDEASQILLPL 812 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------------chhhhcc---ccCEEEEccccccccch
Confidence 1122222 2233 356666642221 122 334 89999999999987554
Q ss_pred CCCceecc
Q 005155 142 GRNPLLIS 149 (711)
Q Consensus 142 a~tPLiiS 149 (711)
.--||.+|
T Consensus 813 ~LgPL~~s 820 (1100)
T KOG1805|consen 813 CLGPLSFS 820 (1100)
T ss_pred hhhhhhhc
Confidence 44454444
No 176
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=87.77 E-value=2.4 Score=50.47 Aligned_cols=68 Identities=26% Similarity=0.230 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~Lpa~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
|-|..++...+..+ |+.=..|+|||-+ ..+.+.+..+.+ ..|.+++||--=|+|-.|.++....-+++
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 68999998777776 7777899999853 444444445532 46889999999999999988766655544
No 177
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=87.38 E-value=1.4 Score=46.05 Aligned_cols=118 Identities=19% Similarity=0.093 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+-|.-.+-. .+|. ++...-|+|||.+.+--+.-....+ ..+.++|.|...|..-.+.+...+...+....
T Consensus 3 ~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~---- 77 (315)
T PF00580_consen 3 DEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS---- 77 (315)
T ss_dssp HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT----
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc----
Confidence 345555444 4555 8899999999998766654222233 47999999999888777777775543321100
Q ss_pred CCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
.+ .-.........+.++|...|....|+.+..... - ..++-|+|+.+.
T Consensus 78 -~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-----~---~~~~~i~~~~~~ 126 (315)
T PF00580_consen 78 -DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-----I---DPNFEILDEEEQ 126 (315)
T ss_dssp -T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-----S---HTTTEEECHHHH
T ss_pred -ccccccccccccchheeehhhhhhhhhhhhhhhhhh-----c---cccceeecchhc
Confidence 00 001112234568889999998888877644321 1 346788888874
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.34 E-value=1.7 Score=44.90 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=27.6
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCH
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVND 53 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~Nd 53 (711)
-|....=+|.+.. ++.-..|+|||+.|+-.++-....|+ .+.++-|+-
T Consensus 8 ~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 8 EQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp HHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred HHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 3555555666555 77888999999988777753334454 444444443
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=87.16 E-value=1.7 Score=51.00 Aligned_cols=55 Identities=16% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHH
Q 005155 7 QIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 7 Ql~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae 61 (711)
|--+.......+ +.+=.-|+|||-+.+..+...-..|++|.|+.|+..=-.-..+
T Consensus 190 Qk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 190 QKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred HHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHH
Confidence 444444444442 7778899999998888887555689999999998764444333
No 180
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.89 E-value=0.5 Score=51.46 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=24.0
Q ss_pred hhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 103 gfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.|++|+..... ....+.. ++.++|+||+|+|--|
T Consensus 111 ~fakl~~~~~~-~~~~~~~---~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 111 NFAKLTVLLKR-SDGYPCP---PFKIIILDECDSMTSD 144 (346)
T ss_pred CHHHHhhcccc-ccCCCCC---cceEEEEechhhhhHH
Confidence 47777776542 2344555 8999999999999543
No 181
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.69 E-value=4.6 Score=46.19 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.||+|||.+++-.|....-.|+.|.+|+...|=+ .-.+++..+.+.+|+.+.
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHcCCcEE
Confidence 6999999866544443455789999999877633 235667777788888754
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=86.41 E-value=1.1 Score=54.20 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=24.2
Q ss_pred EEecCCCcHHHHHHHHHH-HHHHcCC-CEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAY-LNALTGE-GVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~-l~AL~G~-~VhVvT~Nd 53 (711)
++|.||+|||-+++=.+| ||---|. .-.||.|+.
T Consensus 79 I~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~ 114 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSL 114 (985)
T ss_pred EEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccH
Confidence 799999999999887776 4444554 445556654
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.14 E-value=2.4 Score=38.06 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA 56 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA 56 (711)
+.-=.+|.|||..+-..+....-.+..|..+..+...+
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 55558999999644443321112355566666555444
No 184
>PRK10867 signal recognition particle protein; Provisional
Probab=85.81 E-value=6.2 Score=45.15 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYR 91 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~------~aY~ 91 (711)
.-=.+|+|||.+++-.|+..+.. |+.|.+|+.-.|=+. ..+++..+.+..|+.+-......+|.+ .+ ..-.
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-a~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~ 183 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-AIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENG 183 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcC
Confidence 33479999997655555434566 999999998766433 235566667788888765433333322 11 1123
Q ss_pred CC-eEEECCCchhh
Q 005155 92 CD-ITYTNNSELGF 104 (711)
Q Consensus 92 ~D-I~YgT~~elgf 104 (711)
+| |++=|++++..
T Consensus 184 ~DvVIIDTaGrl~~ 197 (433)
T PRK10867 184 YDVVIVDTAGRLHI 197 (433)
T ss_pred CCEEEEeCCCCccc
Confidence 56 66778888764
No 185
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.55 E-value=2.8 Score=40.84 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=31.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
=.+|+|||.++...+...+-.|..|.++....+ -....+.+....+.+|+.+
T Consensus 7 G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~~~~ 58 (173)
T cd03115 7 GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY-RPAAIEQLRVLGEQVGVPV 58 (173)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC-ChHHHHHHHHhcccCCeEE
Confidence 358999998765555444556888888875443 2223344555555556554
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=85.52 E-value=4.2 Score=48.18 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+-|..++-..+.++ ++.=.-|+|||-+ ..+..++..... ..|.+++||--=|.|-.+.++.-...|+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 56877777666666 7777899999863 444444444432 4699999999999998887766554443
No 187
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.51 E-value=2.6 Score=43.10 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=22.9
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCCCEEEEe
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL-~G~~VhVvT 50 (711)
+.++-||.||-- +|+|-.++.|+ .|.+|.||=
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 778889888743 45555556777 688888873
No 188
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.29 E-value=2 Score=46.01 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=32.5
Q ss_pred cCCCcHHHHHHHHHHHHHHc-C-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALT-G-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~-G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.||.|||-+++-.+...+.. | +.|.+||...|=+.- .+.+..+.+.+|+.+.
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a-~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGA-VEQLKTYAKILGVPVK 255 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhH-HHHHHHHHHHhCCcee
Confidence 59999996544444435565 5 899999987764321 3444444555666553
No 189
>PRK04296 thymidine kinase; Provisional
Probab=85.09 E-value=0.94 Score=45.52 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
.|.|||..+.--+.-.+-.|+.|.++.|
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5789997666555534457889998855
No 190
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=84.91 E-value=1.8 Score=42.20 Aligned_cols=43 Identities=23% Similarity=0.112 Sum_probs=29.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
+.=.+|.|||..+.--++-.+..|.+|..+|.. +-+.+-.+.+
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~ 46 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENA 46 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHH
Confidence 344689999987766665566789999999874 3344333333
No 191
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=84.90 E-value=67 Score=38.27 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=68.3
Q ss_pred chhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-+-|..++.......++...=|+|||-|.+--+. +-+.. ..+.+||-+.--|..--+ .+-..+|..
T Consensus 4 n~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria-~li~~~~v~p~~Il~vTFTnkAA~em~~---Rl~~~~~~~----- 74 (655)
T COG0210 4 NPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIA-YLIAAGGVDPEQILAITFTNKAAAEMRE---RLLKLLGLP----- 74 (655)
T ss_pred CHHHHHHHhcCCCCeEEEECCCCCchhhHHHHHH-HHHHcCCcChHHeeeeechHHHHHHHHH---HHHHHhCcc-----
Confidence 3556666666644558888999999987666554 22322 269999999999983333 344444440
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
. ...+.++|...|+...||+...... - +-+|-|+|+-|.
T Consensus 75 -~----------~~~~~v~TfHs~~~~~lr~~~~~~~-----~---~~~~~i~d~~d~ 113 (655)
T COG0210 75 -A----------AEGLTVGTFHSFALRILRRHGERLG-----L---NANFTILDSDDQ 113 (655)
T ss_pred -c----------ccCcEEeeHHHHHHHHHHHHHHhcC-----C---CCCCEEecHHHH
Confidence 0 0018899999999999997654321 1 456677777664
No 192
>PRK14974 cell division protein FtsY; Provisional
Probab=84.81 E-value=2.6 Score=46.54 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=35.1
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
-=.+|.|||-+..-.+....-.|..|.+++..-|=+ --.+++....+.+|+.+..
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~-~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA-GAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH-HHHHHHHHHHHHcCCceec
Confidence 337999999755444433345678898888664422 1235666677788887653
No 193
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=84.70 E-value=3.6 Score=50.78 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=75.9
Q ss_pred eEEecCCCcHHHH--HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE-EEcCCCCHHHHHhccCCCeE
Q 005155 19 IAEMKTGEGKTLV--STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG-LIQRGMIPEERRSNYRCDIT 95 (711)
Q Consensus 19 IaEm~TGEGKTLv--a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~-~i~~~~~~~~r~~aY~~DI~ 95 (711)
++-+.|-.|||-+ +++=..|.--.-.-|.-|.|++.|-.|++..+..-|+.--+.-+ ...+.++.+=+....+|.|.
T Consensus 530 vIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVL 609 (1330)
T KOG0949|consen 530 VIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVL 609 (1330)
T ss_pred EEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEE
Confidence 8889999999976 44444443334445566899999999999987766643333222 23466777766677899999
Q ss_pred EECCCchhhHHHHHhhhcch-hhhhcCCCCCccEEEeechhhhhhhc
Q 005155 96 YTNNSELGFDYLRDNLAANS-EQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~-~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+.-|.=+ .-.|...+ ...... ..+|+|.||||.+=-.+
T Consensus 610 ITvPecl-----eslLlspp~~q~~ce---rIRyiIfDEVH~iG~~e 648 (1330)
T KOG0949|consen 610 ITVPECL-----ESLLLSPPHHQKFCE---RIRYIIFDEVHLIGNEE 648 (1330)
T ss_pred EEchHHH-----HHHhcCchhhhhhhh---cceEEEechhhhccccc
Confidence 8877543 33333322 122333 68899999999875333
No 194
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=84.65 E-value=5.4 Score=47.54 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=49.3
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-|.-|.-..++.- |.|=.-|+|||.|.+-.+|-.+= .+.+|.|+.|+..-.-+-+|.+- -.||+|.-+.
T Consensus 414 SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh----~tgLKVvRl~ 485 (935)
T KOG1802|consen 414 SQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH----KTGLKVVRLC 485 (935)
T ss_pred HHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH----hcCceEeeee
Confidence 4666777666655 88889999999998877774443 45689999999766655555543 3567777654
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.26 E-value=5.3 Score=44.87 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=42.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cC-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.-=.||.|||.++...+....+ .| +.|.++|...|-. -..|++.-+.+.+|+.+..+...
T Consensus 141 ~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~-ga~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 141 ALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI-GGHEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc-cHHHHHHHHHHHcCCceEecCCc
Confidence 34447999999876655543344 36 5899999877732 35677888888999988766544
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.33 E-value=1.1 Score=39.74 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=22.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCHHHHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQ 57 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~NdyLA~ 57 (711)
..=.+|.|||.++...+. .+... .|..++.+.....
T Consensus 7 l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 7 IVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred EECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEcccc
Confidence 344699999977665554 34333 5777777655443
No 197
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.31 E-value=5.6 Score=36.93 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=25.0
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~ 57 (711)
=.+|.|||..+...+...+-.|..|.++..-..+..
T Consensus 6 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 6 GPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 358999998666555545557888888877655443
No 198
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.33 E-value=5.3 Score=43.73 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=32.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.+|+|||-++.-.|...+..|+.|.+++..-|=+ ...+++.......|+.+.
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~-~a~eql~~~a~~~~i~~~ 173 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA-AAIEQLQVWGERVGVPVI 173 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch-hhHHHHHHHHHHcCceEE
Confidence 7999999765555555677899999998754311 122344444445565543
No 199
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.27 E-value=2.4 Score=42.01 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=21.9
Q ss_pred eEEecC--CCcHHHHHHHHHHHHHHcCCCEEE---EecC
Q 005155 19 IAEMKT--GEGKTLVSTLAAYLNALTGEGVHV---VTVN 52 (711)
Q Consensus 19 IaEm~T--GEGKTLva~Lpa~l~AL~G~~VhV---vT~N 52 (711)
+.++-| |-|||-+|.--++-.+-.|.+|.+ +...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~ 42 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC
Confidence 344544 556776655555556678999998 6554
No 200
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=81.49 E-value=1.8 Score=51.60 Aligned_cols=40 Identities=38% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHc
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT 42 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~ 42 (711)
.|||+|+-=.- +|-+|+ |-|-.||+||||.....+. .+|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal-tWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL-TWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH-HHHH
Confidence 69999975433 456899 7899999999998776664 6664
No 201
>PRK08727 hypothetical protein; Validated
Probab=81.43 E-value=5.6 Score=41.24 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=18.8
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~ 51 (711)
+.-=.||.|||. +-++... ..-.|..|..++.
T Consensus 45 ~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~~~ 77 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAA-AEQAGRSSAYLPL 77 (233)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEeH
Confidence 555679999994 4333332 1234666666664
No 202
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=81.32 E-value=11 Score=43.02 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=51.2
Q ss_pred EEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-----HHh--ccC
Q 005155 20 AEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-----RRS--NYR 91 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-----r~~--aY~ 91 (711)
.-=.+|+|||.+++-.| ++..-.|+.|.+|+...|=+. -.+++....+..|+.+-......+|.+ .+. .-.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~ 182 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENG 182 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcC
Confidence 44469999997655444 433347999999988765332 234455556778887665444334421 111 123
Q ss_pred CC-eEEECCCchhhH
Q 005155 92 CD-ITYTNNSELGFD 105 (711)
Q Consensus 92 ~D-I~YgT~~elgfD 105 (711)
+| |++=|++++..|
T Consensus 183 ~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 183 FDVVIVDTAGRLQID 197 (428)
T ss_pred CCEEEEeCCCccccC
Confidence 56 777888887653
No 203
>COG4889 Predicted helicase [General function prediction only]
Probab=81.07 E-value=4.9 Score=49.26 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 16 ~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
.|++ -|.-|.|||.+++=.+ .||....+..+.|+=.|-.|-..+... -+.+.++...++++
T Consensus 182 RGkL-IMAcGTGKTfTsLkis--Eala~~~iL~LvPSIsLLsQTlrew~~-~~~l~~~a~aVcSD 242 (1518)
T COG4889 182 RGKL-IMACGTGKTFTSLKIS--EALAAARILFLVPSISLLSQTLREWTA-QKELDFRASAVCSD 242 (1518)
T ss_pred CCcE-EEecCCCccchHHHHH--HHHhhhheEeecchHHHHHHHHHHHhh-ccCccceeEEEecC
Confidence 3554 4889999999876554 577779999999999888776554332 24566777777765
No 204
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=80.18 E-value=3.6 Score=41.60 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEecCCCcHH-HHHHHHHHHHHH-cCCCEEEE
Q 005155 19 IAEMKTGEGKT-LVSTLAAYLNAL-TGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKT-Lva~Lpa~l~AL-~G~~VhVv 49 (711)
+.++-||.||- -+|+|-..+.|+ .|.+|+|+
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 67888888873 245555555666 78899987
No 205
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=2.9 Score=46.65 Aligned_cols=90 Identities=23% Similarity=0.196 Sum_probs=47.9
Q ss_pred eEEecCCCcHHHHHHHHH--HHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 005155 19 IAEMKTGEGKTLVSTLAA--YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa--~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Y 96 (711)
++-=.||.|||.+.-..+ +-.+..+.. ++.+|-.--.--..-+..+++.+| .....
T Consensus 46 ~iyG~~GTGKT~~~~~v~~~l~~~~~~~~--~~yINc~~~~t~~~i~~~i~~~~~---~~p~~----------------- 103 (366)
T COG1474 46 IIYGPTGTGKTATVKFVMEELEESSANVE--VVYINCLELRTPYQVLSKILNKLG---KVPLT----------------- 103 (366)
T ss_pred EEECCCCCCHhHHHHHHHHHHHhhhccCc--eEEEeeeeCCCHHHHHHHHHHHcC---CCCCC-----------------
Confidence 677789999998754433 222223332 333333222222344556666666 11111
Q ss_pred ECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 97 gT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
|.+..=.+..|.+++.. .+ ..-++|+||+|.++-
T Consensus 104 g~~~~~~~~~l~~~~~~------~~---~~~IvvLDEid~L~~ 137 (366)
T COG1474 104 GDSSLEILKRLYDNLSK------KG---KTVIVILDEVDALVD 137 (366)
T ss_pred CCchHHHHHHHHHHHHh------cC---CeEEEEEcchhhhcc
Confidence 22222224555555542 23 678999999999863
No 206
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.52 E-value=2.8 Score=50.25 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=37.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhh
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (711)
+..--||+|||++.+ .+ .+-.++++.|||+|..+|.+-++++..||-
T Consensus 33 ~l~Gvtgs~kt~~~a--~~-~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 33 TLLGVTGSGKTFTMA--NV-IAQVNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEECCCCcHHHHHHH--HH-HHHhCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 666779999997654 22 234578999999999999999998887763
No 207
>PRK05973 replicative DNA helicase; Provisional
Probab=79.26 E-value=13 Score=39.11 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=34.0
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
..|. ++--.+|.|||+.++--++-.+..|.+|.++|.-.- ..+-.+.|.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~ 112 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLR 112 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHH
Confidence 4666 677889999999877777656678999998875322 344444444
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.04 E-value=7.3 Score=44.39 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=34.5
Q ss_pred cCCCcHHHHHHHHHHHHH-H-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNA-L-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~A-L-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.||.|||.+++-.|...+ + .|+.|.+||...|=+.- .+++....+.+|+.+-.
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a-~eqL~~~a~~~~vp~~~ 283 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGA-VEQLKTYAKIMGIPVEV 283 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHH-HHHHHHHHHHhCCceEc
Confidence 499999976554443344 4 47899999998763221 24555566777877643
No 209
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.84 E-value=4.1 Score=40.97 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=18.9
Q ss_pred eEEecCC--CcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTG--EGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TG--EGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
+.++-|| -|||-+++--++-.+-.|.+|.|+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4455555 556665554444455688999877
No 210
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=78.46 E-value=16 Score=38.09 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc--CCCCHHHHHh-
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ--RGMIPEERRS- 88 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~--~~~~~~~r~~- 88 (711)
..|. +.--.||.|||..+.--++-.+.. |..|..++.-. -..+-...+... ..|+...... ...+.++-..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 104 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDAA 104 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHH--HhCCCcccCCccccccHHHHHHH
Confidence 4565 566779999997555444434566 88888887632 122222222222 2244332211 1122222111
Q ss_pred --ccC-CC--eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 89 --NYR-CD--ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 89 --aY~-~D--I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+. .+ ++|-..+.+..+.+.+.+..- .... +.+++|||.+..+.
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~l~ 153 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM---AVSH---GIQHIIIDNLSIMV 153 (271)
T ss_pred HHHhcCCCcEEEEcCCCccCHHHHHHHHHHH---HhcC---CceEEEECCHHHHh
Confidence 111 11 334344444455555544321 1123 67899999988874
No 211
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=78.24 E-value=4.1 Score=45.29 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=63.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcC-CCEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTG-EGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G-~~VhVvT~---NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI 94 (711)
++.-..|+|||-++++-+++.++.. .+.++++. ...|..--..++......+|+.........+. .|
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---------~i 75 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---------EI 75 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---------EE
Confidence 5566789999998888777777774 44554432 23366666777888888889875443322221 25
Q ss_pred EEE-CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 95 TYT-NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 95 ~Yg-T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++- |.+.+-|--++|+. +. .+....++++.+|||+.+
T Consensus 76 ~~~~~g~~i~f~g~~d~~----~~--ik~~~~~~~~~idEa~~~ 113 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKP----NK--LKSGAGIAIIWFEEASQL 113 (396)
T ss_pred EecCCCeEEEeecccCCh----hH--hhCcceeeeehhhhhhhc
Confidence 553 35555454443321 11 121125789999999865
No 212
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=78.03 E-value=3.1 Score=51.67 Aligned_cols=115 Identities=24% Similarity=0.398 Sum_probs=81.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHH-HHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRD-AEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RD-ae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI 94 (711)
++-..||.|||++|-++.+ .++ .+..|-+++|-.-|-+-- ..|=..++.- |+++.-..++..|+ -+..-.+||
T Consensus 947 ~~g~ptgsgkt~~ae~a~~-~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~~~~~ 1023 (1230)
T KOG0952|consen 947 LLGAPTGSGKTVVAELAIF-RALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD-VKAVREADI 1023 (1230)
T ss_pred hhcCCccCcchhHHHHHHH-HHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC-hhheecCce
Confidence 5567899999999999987 666 467899999988887644 4455555555 99999988887665 445567899
Q ss_pred EEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 95 TYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 95 ~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
++.|+... ++.-|.. ...+.|+ .+...++||.+.. -+.|-|+
T Consensus 1024 ~ittpek~-dgi~Rsw---~~r~~v~----~v~~iv~de~hll--g~~rgPV 1065 (1230)
T KOG0952|consen 1024 VITTPEKW-DGISRSW---QTRKYVQ----SVSLIVLDEIHLL--GEDRGPV 1065 (1230)
T ss_pred EEcccccc-cCccccc---cchhhhc----cccceeecccccc--cCCCcce
Confidence 99999775 2222211 1123454 5888999998874 5556673
No 213
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=78.01 E-value=0.54 Score=53.04 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY 37 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~ 37 (711)
-|+|||.-+++.++.|- +.-..||+|||=+|.+|++
T Consensus 24 lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred cccccccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 49999999999888765 7778899999999999986
No 214
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.70 E-value=12 Score=43.39 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=49.1
Q ss_pred cCCCcHHHHHHHHHHHHHH-cC-CCEEEEecCHH-HHHHHHHHHHHHhhhcCCeEEEEcCCCCHH-HHHhccCC-CeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDY-LAQRDAEWMERVHRFLGLSVGLIQRGMIPE-ERRSNYRC-DITYT 97 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL-~G-~~VhVvT~Ndy-LA~RDae~~~~~y~~LGLtv~~i~~~~~~~-~r~~aY~~-DI~Yg 97 (711)
.||.|||-++...+....+ .| +.|.+|+...| ++- .|++.-+.+.+|+.+.......+.. .....-++ .|.+-
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA--~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLID 341 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG--HEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLID 341 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH--HHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeC
Confidence 6999999876666554444 45 47998887654 222 3566666788888876554433322 12222233 46778
Q ss_pred CCCchhhH
Q 005155 98 NNSELGFD 105 (711)
Q Consensus 98 T~~elgfD 105 (711)
|.|....|
T Consensus 342 TaGr~~~d 349 (484)
T PRK06995 342 TIGMSQRD 349 (484)
T ss_pred CCCcChhh
Confidence 88876544
No 215
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=77.56 E-value=13 Score=42.88 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=62.0
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH-hccCCC
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-SNYRCD 93 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~-~aY~~D 93 (711)
+++|.=|-|||. ++++.+|...+. |..|.++.++..-|+.-+..+..+.+.......... .+. ..+...
T Consensus 26 ~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~------~~~~~~~~~~ 99 (477)
T PF03354_consen 26 YLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKK------PKIIKSNKKE 99 (477)
T ss_pred EEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchh------hhhhhhhceE
Confidence 789999999986 566666644444 457889999999999988888887765211110000 001 123345
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
|++-.++.+ |-+ ++.+ ...+++. ..+++|+||+|..=
T Consensus 100 i~~~~~~s~-~~~----~s~~--~~~~dG~-~~~~~i~DE~h~~~ 136 (477)
T PF03354_consen 100 IEFPKTGSF-FKA----LSSD--ADSLDGL-NPSLAIFDELHAHK 136 (477)
T ss_pred EEEcCCCcE-EEE----EecC--CCCccCC-CCceEEEeCCCCCC
Confidence 665443322 111 1211 1223322 46899999999874
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=76.56 E-value=7.8 Score=43.90 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=50.5
Q ss_pred cCCCcHHHHHHHHHHHHH-HcC-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHh-ccCCC-eEEEC
Q 005155 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRS-NYRCD-ITYTN 98 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~A-L~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~-aY~~D-I~YgT 98 (711)
.||-|||-+.+=.|+..+ +.+ +.|-+||.--|= -=-.|++.-..+-||+.+.++...-+-++-.. --.|| |.+=|
T Consensus 211 PTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDT 289 (407)
T COG1419 211 PTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDT 289 (407)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeC
Confidence 699999986554444455 444 479999987762 22357888888999999998875433222222 23466 44556
Q ss_pred CCch
Q 005155 99 NSEL 102 (711)
Q Consensus 99 ~~el 102 (711)
.|+=
T Consensus 290 aGrs 293 (407)
T COG1419 290 AGRS 293 (407)
T ss_pred CCCC
Confidence 6654
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=75.95 E-value=12 Score=38.83 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.-=.+|.|||- +.++...+. -.|..|..++.++
T Consensus 49 ~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~~~~ 83 (235)
T PRK08084 49 YLWSREGAGRSHLLHAACAELS-QRGRAVGYVPLDK 83 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEHHH
Confidence 555579999995 444444322 2477777777753
No 218
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.49 E-value=44 Score=39.61 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=62.3
Q ss_pred cCCcccHHHHHHHHcCCC-eE--Ee---CCCCCcccccCCCeEEeChhHHHHHH---HHHHHHhhhcCCcEEEEecchhh
Q 005155 295 TGTAKTEEKEFLKMFQMP-VI--EV---PTNLPNIRVDLPIQSFATARGKWEYA---RQEVESMFRLGRPVLVGSTSVEN 365 (711)
Q Consensus 295 TGTa~te~~Ef~~iY~l~-vv--~I---Pt~~p~~R~d~~d~i~~t~~~K~~aI---i~ei~~~~~~grPVLV~t~Si~~ 365 (711)
+.|.++-..-..+++|+. +. .+ ||-....-...|...-..+.+|-..| .....++...|-.++-||.+-.-
T Consensus 458 ~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 458 DTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKL 537 (1034)
T ss_pred CCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHH
Confidence 345556555566677775 22 22 33322222233333323334443333 33445667889999999999998
Q ss_pred HHHHHHHHHH----CCCCeEE-----EeCCCcchHhH-HHHHH--hcCCCccEEEEcCCCcCCcce
Q 005155 366 SEYLSDLLKQ----QGIPHNV-----LNARPKYAARE-AETVA--QAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 366 SE~Ls~~L~~----~gi~~~v-----LnA~~~~~~~E-a~Iia--~AG~~G~VTIATnmAGRGTDI 419 (711)
+|.+-..-++ -| ||-| ..++ +.+.. ..|-. ..|.-..| ||||-.--|+||
T Consensus 538 CEL~~~~~R~I~~ET~-~~LV~~i~SYRGG--Y~A~DRRKIE~~~F~G~L~gi-IaTNALELGIDI 599 (1034)
T KOG4150|consen 538 CELVLCLTREILAETA-PHLVEAITSYRGG--YIAEDRRKIESDLFGGKLCGI-IATNALELGIDI 599 (1034)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHhhcCc--cchhhHHHHHHHhhCCeeeEE-Eecchhhhcccc
Confidence 8876543332 22 1110 0111 11111 11222 44544444 899999989888
No 219
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.18 E-value=5.5 Score=45.08 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=48.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH-----hc--cCCC-e
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-----SN--YRCD-I 94 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~-----~a--Y~~D-I 94 (711)
.||.|||-+++-.+....-.|+.|.+||.-.|=+. -.+++....+.+|+.+-.. .++.+=. .. ..+| |
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~~---~dp~dL~~al~~l~~~~~~D~V 289 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIVA---TSPAELEEAVQYMTYVNCVDHI 289 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEec---CCHHHHHHHHHHHHhcCCCCEE
Confidence 48999996544444434567999999999877221 1567787888888876532 2332211 12 2456 6
Q ss_pred EEECCCchh
Q 005155 95 TYTNNSELG 103 (711)
Q Consensus 95 ~YgT~~elg 103 (711)
++=|+|+..
T Consensus 290 LIDTAGr~~ 298 (407)
T PRK12726 290 LIDTVGRNY 298 (407)
T ss_pred EEECCCCCc
Confidence 666777754
No 220
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=74.49 E-value=16 Score=44.63 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=44.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
++-..=|=|||.++.+.++..+-.+. .+.|..|+.+=.+--++-...-+++||++-.+..
T Consensus 235 vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~ 296 (758)
T COG1444 235 VLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAP 296 (758)
T ss_pred EEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcccccc
Confidence 77888899999999988765444443 6777777777777777777888899998866543
No 221
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=74.00 E-value=4.8 Score=39.20 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|+--+-|.|||.+++..|...+..|++|.++-..
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 4556789999987776665567799999999774
No 222
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=73.57 E-value=9.8 Score=36.59 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCC-
Q 005155 339 WEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMA- 413 (711)
Q Consensus 339 ~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~----gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmA- 413 (711)
+..++..+.+..++|+.|+|.|.+.+.++.|.+.|-.. -|||...+..+ . + .-.|.|+++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~--~---------~--~~PV~i~~~~~~ 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPP--A---------A--RQPVLITWDQEA 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SS--T---------T----SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCC--C---------C--CCeEEEecCccc
Confidence 47888999999999999999999999999999999654 58998754421 0 1 13799999883
Q ss_pred --cCCcceecC
Q 005155 414 --GRGTDIILG 422 (711)
Q Consensus 414 --GRGTDIkLg 422 (711)
.-+.|+.+.
T Consensus 82 ~~~~~~~vLin 92 (137)
T PF04364_consen 82 NPNNHADVLIN 92 (137)
T ss_dssp ---S--SEEEE
T ss_pred CCCCCCCEEEE
Confidence 333555443
No 223
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.83 E-value=14 Score=42.10 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=47.6
Q ss_pred cCCCcHHHHHHHHHHHHH-H-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HHhccCCC-eEEEC
Q 005155 23 KTGEGKTLVSTLAAYLNA-L-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RRSNYRCD-ITYTN 98 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~A-L-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~~aY~~D-I~YgT 98 (711)
.||.|||-+....+.... . .+..|.++|.+.|-. --.+++..+.+.+|+.+..+....+... ....-.+| |.+-|
T Consensus 199 pnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d~VLIDT 277 (420)
T PRK14721 199 PTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMVLIDT 277 (420)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCCEEEecC
Confidence 699999876554443222 2 346899999888765 3355677777889999876554332211 11222344 55556
Q ss_pred CCchh
Q 005155 99 NSELG 103 (711)
Q Consensus 99 ~~elg 103 (711)
.|...
T Consensus 278 aGrsq 282 (420)
T PRK14721 278 VGMSQ 282 (420)
T ss_pred CCCCc
Confidence 65543
No 224
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=71.32 E-value=5.2 Score=38.88 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=25.7
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.--+=|+|||.+++-.|+..|-.|+.|++|=-+
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344679999988777777678889999998543
No 225
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.30 E-value=2.8 Score=44.46 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=27.0
Q ss_pred hhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcC
Q 005155 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (711)
Q Consensus 103 gfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea 142 (711)
|.|..|..+..-...+|.-.|..+.++|+||||||- +.|
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-~gA 129 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-AGA 129 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-hHH
Confidence 567778877654334444334478999999999993 554
No 226
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=69.97 E-value=6 Score=43.64 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~N 52 (711)
+.-=.+|.|||.++--.+ +.+. +..+.++..|
T Consensus 59 lI~G~~GtGKT~l~~~v~--~~l~~~~~~~~~v~in 92 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVF--EELEEIAVKVVYVYIN 92 (394)
T ss_pred EEECCCCCCHHHHHHHHH--HHHHHhcCCcEEEEEE
Confidence 666789999997644333 3332 2235555554
No 227
>PHA02533 17 large terminase protein; Provisional
Probab=69.89 E-value=27 Score=41.15 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHH-HHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVST-LAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~-Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+.|-|.--.-.++.++ ++.+.=.-|||.+++ +.++ .++ .|..|.++.++..-|+--++.+..+++.+
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~-~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLH-YVCFNKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4456654333344455 888888999997554 5555 344 34578889999999999888888777654
No 228
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=69.74 E-value=13 Score=44.64 Aligned_cols=64 Identities=20% Similarity=0.042 Sum_probs=47.2
Q ss_pred CCCchhHHHHHHHHh----CC---CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 1 MRHFDVQIIGGAVLH----DG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~----~G---~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+.|..-|.-+.-.+. +| .++.-.||+|||++++ .+ ..-.++.+.|||+|..+|.+-++.+..++
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia--~l-~~~~~r~vLIVt~~~~~A~~l~~dL~~~~ 81 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA--NV-IARLQRPTLVLAHNKTLAAQLYSEFKEFF 81 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH--HH-HHHhCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 357777777666553 33 3777889999998754 22 23357899999999999999888887765
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.67 E-value=18 Score=41.25 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=36.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.||.|||.+++..|....-.|+.|.+++...|=+. ..+++....+.+|+.+...
T Consensus 249 ptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~lgipv~v~ 302 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVIAV 302 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhhcCCcEEec
Confidence 49999997655555444567889999998766421 3445555666788887644
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=69.56 E-value=12 Score=38.62 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=21.1
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~N 52 (711)
+.-=.+|.|||. +-+++-. ..-.|.+|..++.+
T Consensus 43 ~l~G~~G~GKThL~~ai~~~-~~~~~~~~~y~~~~ 76 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNH-YLLNQRTAIYIPLS 76 (229)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCCeEEeeHH
Confidence 455679999995 4444332 23357788777765
No 231
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=68.67 E-value=15 Score=37.90 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhh
Q 005155 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGF 104 (711)
Q Consensus 25 GEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elgf 104 (711)
.+|||.-.+-.++-....|..|.|.|| .+-...|.....--.|++ +.| +++-.+.++ |
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp-------------~iD~R~~~~~V~Sr~G~~-------~~A-~~i~~~~~i-~ 71 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKP-------------AIDTRYGVGKVSSRIGLS-------SEA-VVIPSDTDI-F 71 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEec-------------ccccccccceeeeccCCc-------ccc-eecCChHHH-H
Confidence 589999888888877889999999998 233333333221111221 111 444555555 6
Q ss_pred HHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 105 DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 105 DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
|++...-. .. +.++++||||.-
T Consensus 72 ~~i~~~~~-------~~---~~~~v~IDEaQF 93 (201)
T COG1435 72 DEIAALHE-------KP---PVDCVLIDEAQF 93 (201)
T ss_pred HHHHhccc-------CC---CcCEEEEehhHh
Confidence 66654211 11 378999999875
No 232
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=67.96 E-value=5.8 Score=41.51 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=25.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|-|.|||-+++-.|+..|..|++|.||=-.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 799999987777777778999999988553
No 233
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=67.70 E-value=11 Score=47.81 Aligned_cols=97 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCcHHH-HHHHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCC-CCHHHHHhccCC----CeE
Q 005155 25 GEGKTL-VSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRG-MIPEERRSNYRC----DIT 95 (711)
Q Consensus 25 GEGKTL-va~Lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv~~i~~~-~~~~~r~~aY~~----DI~ 95 (711)
|=|||+ +..|.|+|.+-.|. .=.||.++..+-. |=-.|-+|. |+++-..+|. -...+||+.+.. +|.
T Consensus 644 GLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn----WEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVC 719 (1958)
T KOG0391|consen 644 GLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN----WEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVC 719 (1958)
T ss_pred cccchhHHHHHHHHHHhcccCCCCceEEeechhhhh----hhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEe
Q ss_pred EECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+.+=.-+ ++|.-+.. .+ .-.|+|+||++.|
T Consensus 720 ItSYklv----~qd~~AFk-----rk---rWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 720 ITSYKLV----FQDLTAFK-----RK---RWQYLVLDEAQNI 749 (1958)
T ss_pred ehhhHHH----HhHHHHHH-----hh---ccceeehhhhhhh
No 234
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=67.02 E-value=12 Score=36.76 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=59.0
Q ss_pred eEEeChhHHHH-HHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 330 QSFATARGKWE-YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 330 ~i~~t~~~K~~-aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
.+|...+++.. +++..+.++...|.+|||-|.|.+..+.|-+.|-. .-|||+.--.. ..+++|
T Consensus 5 ~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e~-----------~~~~qP- 72 (144)
T COG2927 5 TFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGEP-----------PPAGQP- 72 (144)
T ss_pred EEEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCCC-----------CCCCCC-
Confidence 34666666666 78899999999999999999999999999999954 56898753211 134555
Q ss_pred cEEEEc---CCCcCCcceecCC
Q 005155 405 AITIST---NMAGRGTDIILGG 423 (711)
Q Consensus 405 ~VTIAT---nmAGRGTDIkLgg 423 (711)
|.|++ |=.++=.|+.+++
T Consensus 73 -Ili~~~~~~pn~~~~~~lInl 93 (144)
T COG2927 73 -ILIAWPGGNPNSARVDLLINL 93 (144)
T ss_pred -EEEEcCCCCCCCCceeEEEec
Confidence 88876 4455555666654
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=66.65 E-value=16 Score=37.60 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=30.3
Q ss_pred CccEEEeechhhhhhhc---------------CCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeC
Q 005155 125 PFHFAIVDEVDSVLIDE---------------GRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVEL 179 (711)
Q Consensus 125 ~~~~aIVDEvDs~LiDe---------------a~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~ 179 (711)
..++++||.+|.+--.. ...++|+|+...... +-..-.++...|..+..+.+.+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~-l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE-LSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT-TTTS-HHHHHHHHCSEEEEE--
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc-ccccChhhhhhHhhcchhhcCC
Confidence 78889999988763221 345788876543322 1112346777776655566543
No 236
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=66.36 E-value=20 Score=31.61 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=26.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
.-.+-|.|||.++...+...+-.|++|.++-.+..
T Consensus 5 ~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44578999998655555555669999999987766
No 237
>PLN03025 replication factor C subunit; Provisional
Probab=66.06 E-value=13 Score=40.40 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.2
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+..++||||||.|-
T Consensus 99 ~~kviiiDE~d~lt 112 (319)
T PLN03025 99 RHKIVILDEADSMT 112 (319)
T ss_pred CeEEEEEechhhcC
Confidence 57899999999973
No 238
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=66.03 E-value=28 Score=45.02 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=69.5
Q ss_pred chhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcC
Q 005155 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQR 79 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~---~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~~i~~ 79 (711)
++-|.-++-.-...-++.+.-|+|||.+.+--+.-..+.|. .+.|||-|.--|.--.+.++.-. +.+.- .+
T Consensus 3 t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-----~p 77 (1232)
T TIGR02785 3 TDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-----EP 77 (1232)
T ss_pred CHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-----Cc
Confidence 45576666543233389999999999887766653445564 48999999987754333333222 11110 00
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
....-.++...-....++|...|-...||.+... .-+ +.+|-|.||.+.
T Consensus 78 ~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~----l~l----dP~F~i~de~e~ 126 (1232)
T TIGR02785 78 NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL----LDL----DPSFRILTDTEQ 126 (1232)
T ss_pred hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh----cCC----CCCceeCCHHHH
Confidence 1111112222223455699999988888886432 112 335567898886
No 239
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=65.40 E-value=7.7 Score=39.81 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=24.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
++-.+.|.|||.+++-.|+..|-.|++|.+|=
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLGKKVVLID 37 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45668999999876666655667788888883
No 240
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.33 E-value=35 Score=34.14 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.|.+.++ .+|.|||..+.-.++-.+-.|.+|..++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4554444 6999999887666654445677777777743
No 241
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=65.30 E-value=8 Score=38.74 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
|+-.+.|+|||.+++-.|...|-.|+.|.+|=.+..
T Consensus 22 v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 22 ITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 566789999998766666667789999999976544
No 242
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=65.19 E-value=25 Score=32.79 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=24.6
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
..-+.|.|||.++...+...+-.|+.|.++....
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 3447899998765555544466899999998776
No 243
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=64.82 E-value=19 Score=44.00 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhCC-C--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 5 dvQl~g~~~L~~G-~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae 61 (711)
+-|.-++-.+..+ + +..=..|+|||-+.-....+....|..|.+++|+---|++-.+
T Consensus 355 ~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 355 EEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHh
Confidence 4566666656553 4 7777899999854333222233469999999999887776543
No 244
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=64.78 E-value=8.1 Score=40.46 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=24.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|+ .|-|.|||-+++-.|+..|..|+.|.||=
T Consensus 7 v~-~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 7 VY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45 48999999876666666788999999884
No 245
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=64.52 E-value=1.4 Score=44.54 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=23.6
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.-..=|-|||-+..+.+....-.|+ .|.|..||..=++.-++....-.+.+|++.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~ 57 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE 57 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-----------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc
Confidence 3455699999888887752222332 688888988766655555444444444443
No 246
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=63.93 E-value=8.3 Score=41.65 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
-|-|+|||.+++-.++..|..|++|.+|=-
T Consensus 7 gKGGvGKTT~a~nLA~~La~~g~rVLlID~ 36 (296)
T TIGR02016 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLGC 36 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 478999999888777777889999988754
No 247
>PRK05580 primosome assembly protein PriA; Validated
Probab=63.74 E-value=31 Score=41.67 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
..|....+.-+......|+.|||.+++++.+..+.+.|++. |+...+++++....++.....+ ..| ...|.|+|..|
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgTrsa 251 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGARSA 251 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEeccHH
Confidence 34555444445555567899999999999999999999874 7888899986433333322222 345 34788999643
No 248
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.68 E-value=26 Score=40.87 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=44.5
Q ss_pred HhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC
Q 005155 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (711)
Q Consensus 348 ~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn 411 (711)
...+.|+.|||.++++.-+..+.+.|++. |.++.++|++....++.....+ ..| ...|.|+|.
T Consensus 20 ~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTr 84 (505)
T TIGR00595 20 KVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTR 84 (505)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECCh
Confidence 33457889999999999999999999875 7788899986433333322222 344 446888885
No 249
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.44 E-value=5.7 Score=45.89 Aligned_cols=102 Identities=26% Similarity=0.313 Sum_probs=51.8
Q ss_pred HhCCC--eEEecCCCcHHHH-HHHHHHHHHHc-CCCEEEEecCH----HHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH
Q 005155 14 LHDGS--IAEMKTGEGKTLV-STLAAYLNALT-GEGVHVVTVND----YLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE 85 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLv-a~Lpa~l~AL~-G~~VhVvT~Nd----yLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~ 85 (711)
|++++ |.-=.||+|||.- =-..+. ..+. ..+|-+--|-+ .+|+|-+++|-- -||-.||....- +
T Consensus 59 l~~nQ~~v~vGetgsGKttQiPq~~~~-~~~~~~~~v~CTQprrvaamsva~RVadEMDv---~lG~EVGysIrf---E- 130 (699)
T KOG0925|consen 59 LLNNQIIVLVGETGSGKTTQIPQFVLE-YELSHLTGVACTQPRRVAAMSVAQRVADEMDV---TLGEEVGYSIRF---E- 130 (699)
T ss_pred HhcCceEEEEecCCCCccccCcHHHHH-HHHhhccceeecCchHHHHHHHHHHHHHHhcc---ccchhccccccc---c-
Confidence 34444 4555799999962 111121 1221 14444433333 578899988862 234444432211 0
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcch--hhhhcCCCCCccEEEeechhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANS--EQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~--~~~v~r~~R~~~~aIVDEvDs 136 (711)
. .+||..+ +-|..|.|-.+. .+..+. ...++|+||||.
T Consensus 131 -----d----C~~~~T~-Lky~tDgmLlrEams~p~l~---~y~viiLDeahE 170 (699)
T KOG0925|consen 131 -----D----CTSPNTL-LKYCTDGMLLREAMSDPLLG---RYGVIILDEAHE 170 (699)
T ss_pred -----c----cCChhHH-HHHhcchHHHHHHhhCcccc---cccEEEechhhh
Confidence 0 1233333 555555554321 123344 789999999983
No 250
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=63.32 E-value=11 Score=46.04 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=40.8
Q ss_pred CCCeEEecCCCcHHH--HHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 16 DGSIAEMKTGEGKTL--VSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 16 ~G~IaEm~TGEGKTL--va~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|.|.-=.-|.|||+ ++.|-.||.--.+ ....||+|.--|- .|-..|.+|+|.
T Consensus 264 ~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~----nWkkEF~KWl~~ 323 (776)
T KOG0390|consen 264 GGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVN----NWKKEFGKWLGN 323 (776)
T ss_pred CceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHH----HHHHHHHHhccc
Confidence 355655567999997 5677777666667 7899999977664 599999999995
No 251
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=62.77 E-value=16 Score=45.54 Aligned_cols=120 Identities=20% Similarity=0.358 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHH-HhCCC---eEEecCCCcHHH-HHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 1 MRHFDVQIIGGAV-LHDGS---IAEMKTGEGKTL-VSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 1 ~rp~dvQl~g~~~-L~~G~---IaEm~TGEGKTL-va~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+++|....+=.++ |.+|+ |.-=.+|=|||+ +..|.+||.--.+ .+-.||+|+.-|.. |--.|-.|. =|
T Consensus 395 Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N----W~~Ef~kWa-PS 469 (1157)
T KOG0386|consen 395 LKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN----WSSEFPKWA-PS 469 (1157)
T ss_pred CchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC----chhhccccc-cc
Confidence 4566666555554 44555 444468999998 6777788654332 35789999998875 655554443 34
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+..|+..-+|++|+.- -+.+|+..| ++|+-. .+ .+.... .-.|.||||-|+|
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTt-----yEyiik----dk-~lLsKI--~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTT-----YEYIIK----DK-ALLSKI--SWKYMIIDEGHRM 527 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeee-----HHHhcC----CH-HHHhcc--CCcceeecccccc
Confidence 4455544456666533 235777666 455532 11 111110 3579999999976
No 252
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=62.53 E-value=85 Score=33.20 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=28.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEecCHHHHHH---HHHHHHHHhhh
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQR---DAEWMERVHRF 69 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~---~VhVvT~NdyLA~R---Dae~~~~~y~~ 69 (711)
|..+.-|.|||.+.++.++..++... .|.++.+++.|+.. ...++..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS 57 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence 45677899999887777776777544 45555444444443 44455555444
No 253
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.39 E-value=22 Score=43.53 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=48.3
Q ss_pred cCCCcHHHHHHHHHHHHH-HcC-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH----HhccCCC-eE
Q 005155 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER----RSNYRCD-IT 95 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~A-L~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r----~~aY~~D-I~ 95 (711)
.||.|||-++...+.... ..| +.|.++|.-.|=+- -.+++.-+.+.+|+.+-.+. ++.+- +..-.+| |+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~~~~---~~~~l~~al~~~~~~D~VL 268 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG-ALEQLRIYGRILGVPVHAVK---DAADLRFALAALGDKHLVL 268 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH-HHHHHHHHHHhCCCCccccC---CHHHHHHHHHHhcCCCEEE
Confidence 699999876666554443 456 58999998766411 24677778888998876543 22221 1222446 55
Q ss_pred EECCCchh
Q 005155 96 YTNNSELG 103 (711)
Q Consensus 96 YgT~~elg 103 (711)
+=|+++..
T Consensus 269 IDTAGRs~ 276 (767)
T PRK14723 269 IDTVGMSQ 276 (767)
T ss_pred EeCCCCCc
Confidence 66787664
No 254
>PRK11054 helD DNA helicase IV; Provisional
Probab=62.38 E-value=23 Score=42.99 Aligned_cols=84 Identities=23% Similarity=0.190 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhCCCeEEecCCCcHHHHHHHHH-HHHH---HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 5 DVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAA-YLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 5 dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa-~l~A---L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+-|-.++..-....++...-|+|||.|.+--+ ||-. ..+..+.++|.|+-.|..-.+.+ -..+|.
T Consensus 199 ~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL---~~~lg~-------- 267 (684)
T PRK11054 199 PSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERI---RERLGT-------- 267 (684)
T ss_pred HHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHH---HHhcCC--------
Confidence 45655554333334888999999998765443 4321 13458999999999997554443 344441
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHh
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~ 110 (711)
.+|..+|...|++..|++.
T Consensus 268 -----------~~v~v~TFHSlal~Il~~~ 286 (684)
T PRK11054 268 -----------EDITARTFHALALHIIQQG 286 (684)
T ss_pred -----------CCcEEEeHHHHHHHHHHHh
Confidence 2488899999999988874
No 255
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=61.87 E-value=28 Score=34.40 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhCC---CeEEecCCCcHHH-HHHHHHHH-------HHHcCCCEEEEecCHHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDG---SIAEMKTGEGKTL-VSTLAAYL-------NALTGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTL-va~Lpa~l-------~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+-|..++..++.. .+++=.-|+|||- ++.+.+.+ ....++.|.|+++|..-...-.+.+..
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4577788766643 4777788999994 34444433 145788999999999887776666655
No 256
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=61.85 E-value=13 Score=38.06 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
.|. +..-.+|.|||..+.--++-.+..|..|..++.-+-
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 455 455689999998666555534457899999888443
No 257
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=61.43 E-value=17 Score=41.57 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.6
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
..+++||||+|.++
T Consensus 194 ~~dvLlIDDi~~l~ 207 (440)
T PRK14088 194 KVDVLLIDDVQFLI 207 (440)
T ss_pred cCCEEEEechhhhc
Confidence 47899999999864
No 258
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=61.38 E-value=6.8 Score=38.50 Aligned_cols=46 Identities=24% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 85 ~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.|..+..|||++++-+ ||.+-.....-..... +-.++|+||||.+.
T Consensus 113 ~r~~~~~adivi~~y~-----yl~~~~~~~~~~~~~~---~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 113 ARELAKNADIVICNYN-----YLFDPSIRKSLFGIDL---KDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHCGGG-SEEEEETH-----HHHSHHHHHHHCT--C---CCEEEEETTGGGCG
T ss_pred HHHhcccCCEEEeCHH-----HHhhHHHHhhhccccc---cCcEEEEecccchH
Confidence 4667788999999865 3443322111111222 56799999999973
No 259
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=59.68 E-value=10 Score=42.77 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=26.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
|+-.|-|.|||.+++-.|+..|+.|+.|.||=-
T Consensus 126 v~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 566789999998777777667899999988843
No 260
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=59.35 E-value=12 Score=40.81 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.6
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+.-++||||+|.++
T Consensus 129 ~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 129 DSLIIVLDEIDYLV 142 (365)
T ss_pred CeEEEEECchhhhc
Confidence 45689999999986
No 261
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=59.23 E-value=35 Score=40.72 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~--G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
|-|.-++-. ..|. ++-..-|+|||-+.+--+. ..+. | +.+.+||.++--|..--+. +.+.+|-.
T Consensus 4 ~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~~~p~~IL~vTFt~~Aa~em~~R---l~~~l~~~----- 73 (664)
T TIGR01074 4 PQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIA-YLIQNCGYKARNIAAVTFTNKAAREMKER---VAKTLGKG----- 73 (664)
T ss_pred HHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCHHHeEEEeccHHHHHHHHHH---HHHHhCcc-----
Confidence 456554332 3566 7888899999987665553 2232 3 4699999999888743333 44455421
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-..+|.++|...|.+..|+..... ... ...|-|+|+.|..
T Consensus 74 -----------~~~~v~v~TfHs~a~~il~~~~~~------~g~--~~~~~il~~~~~~ 113 (664)
T TIGR01074 74 -----------EARGLTISTFHTLGLDIIKREYNA------LGY--KSNFSLFDETDQL 113 (664)
T ss_pred -----------ccCCeEEEeHHHHHHHHHHHHHHH------hCC--CCCCEEeCHHHHH
Confidence 013588999999999999875321 100 2346688988853
No 262
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=59.19 E-value=13 Score=38.08 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=27.1
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+--+=|.|||.+++-.++..|..|++|.+|=...
T Consensus 7 ~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3456799999877777776788999999998754
No 263
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=59.02 E-value=81 Score=34.87 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=36.4
Q ss_pred CeEEECCC----chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHH
Q 005155 93 DITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (711)
Q Consensus 93 DI~YgT~~----elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~ 168 (711)
|+.+-++. .++.|-.|+-...-....... +.+++|||+||.|= . ..++.+.+.
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g---~~kV~iI~~ae~m~-~-------------------~AaNaLLKt 131 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLG---GAKVVWLPDAALLT-D-------------------AAANALLKT 131 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccC---CceEEEEcchHhhC-H-------------------HHHHHHHHH
Confidence 56665442 366777776432111111233 77899999999983 1 367889999
Q ss_pred cccCC
Q 005155 169 LVQGL 173 (711)
Q Consensus 169 l~~~~ 173 (711)
|+++-
T Consensus 132 LEEPp 136 (334)
T PRK07993 132 LEEPP 136 (334)
T ss_pred hcCCC
Confidence 98753
No 264
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=58.58 E-value=11 Score=38.03 Aligned_cols=28 Identities=32% Similarity=0.201 Sum_probs=22.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|=|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 KGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6799999877766666777898888773
No 265
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=58.22 E-value=21 Score=39.01 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=59.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCC-EEEEecCHHH---HHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEG-VHVVTVNDYL---AQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~-VhVvT~NdyL---A~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI 94 (711)
+.==.||-||.-+.+-.++-|.|.|+. ..-||+|+-| |+||...++-- .+.+-.+. .++.. .......+|
T Consensus 66 ~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~----~i~v~~l~-~~~~~-~~~~~~~Gv 139 (303)
T PF13872_consen 66 FLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD----NIPVHPLN-KFKYG-DIIRLKEGV 139 (303)
T ss_pred EeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC----cccceech-hhccC-cCCCCCCCc
Confidence 666689999987544445558999985 7778888766 67776655421 22222111 11111 112345678
Q ss_pred EEECCCchhhHHHHH-hhhcchhhhhcCC-CCCccEEEeechhhh
Q 005155 95 TYTNNSELGFDYLRD-NLAANSEQLVMRW-PKPFHFAIVDEVDSV 137 (711)
Q Consensus 95 ~YgT~~elgfDyLrD-~l~~~~~~~v~r~-~R~~~~aIVDEvDs~ 137 (711)
+++|=+.|.-..=.. .-..+.++++.=. .-.-.++|+||+|.+
T Consensus 140 lF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 140 LFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred cchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 888877653211000 0001112222100 002348899999997
No 266
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=57.68 E-value=60 Score=33.10 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCHHHH-
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLIQRG-MIPEER- 86 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~N---dyLA~RDae~~~~~y~~LGLtv~~i~~~-~~~~~r- 86 (711)
..|. +.--.+|.|||..+.=-++-.+.. |.+|..++.- ..+..|-. ....|++...+..+ ...+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~ 84 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL------ASESGISLSKLRTGSLSDEDWE 84 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH------HHhcCCCHHHHhcCCCCHHHHH
Confidence 4566 667789999997655555545566 8888888842 23333321 12344443322222 222110
Q ss_pred ------HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 87 ------RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 87 ------~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.......+.+...+.+..+.|.+.+..- .... +.+++|||=.+.|
T Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~---~~~~---~~~~vvID~l~~l 135 (242)
T cd00984 85 RLAEAIGELKELPIYIDDSSSLTVSDIRSRARRL---KKEH---GLGLIVIDYLQLM 135 (242)
T ss_pred HHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcCchhc
Confidence 1111234444455566677777665421 1122 6788999966654
No 267
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=57.66 E-value=28 Score=35.09 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=18.7
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCCCEEEEe
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL-~G~~VhVvT 50 (711)
++++-||.||=- +|+|-..+.|+ .|.+|+++=
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQ 38 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQ 38 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 567778877632 35555555666 788999874
No 268
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=57.61 E-value=93 Score=38.03 Aligned_cols=149 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCC--HHHHH---------hc
Q 005155 25 GEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMI--PEERR---------SN 89 (711)
Q Consensus 25 GEGKTLva~Lpa~l~AL~G~---~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv~~i~~~~~--~~~r~---------~a 89 (711)
|=|||.-+.-.++..|-.-. +-.||||...|-. |...|-+|+ .++|.-.-|+.+ ..-|+ ..
T Consensus 596 GLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~N----WaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rn 671 (1185)
T KOG0388|consen 596 GLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHN----WAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRN 671 (1185)
T ss_pred ccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhH----HHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccC
Q ss_pred cCCCeEEECCCchhhH--HHHHhhhcchhhhhcCCCCCccEEEeechh-----------hhhhhcCCCceeccCCCCCCc
Q 005155 90 YRCDITYTNNSELGFD--YLRDNLAANSEQLVMRWPKPFHFAIVDEVD-----------SVLIDEGRNPLLISGEASKDV 156 (711)
Q Consensus 90 Y~~DI~YgT~~elgfD--yLrD~l~~~~~~~v~r~~R~~~~aIVDEvD-----------s~LiDea~tPLiiSg~~~~~~ 156 (711)
-..+|++.+---+.-| ||+.- +-.|.|+|||- +.|.=.+|.-|.++|.+=.++
T Consensus 672 a~fhVviTSYQlvVtDeky~qkv--------------KWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNs 737 (1185)
T KOG0388|consen 672 APFHVVITSYQLVVTDEKYLQKV--------------KWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNS 737 (1185)
T ss_pred CCceEEEEeeeeeechHHHHHhh--------------hhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchH
Q ss_pred --cchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhc
Q 005155 157 --ARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYR 225 (711)
Q Consensus 157 --~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~ 225 (711)
.++..+..|+..| |+..+.+..|...-+..|..+.
T Consensus 738 MqELWALLHFIMPsL----------------------------------FDshneFseWFSKdIEshAe~~ 774 (1185)
T KOG0388|consen 738 MQELWALLHFIMPSL----------------------------------FDSHNEFSEWFSKDIESHAEMN 774 (1185)
T ss_pred HHHHHHHHHHHhhHh----------------------------------hhchHHHHHHHhhhhHhHHHhc
No 269
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=57.37 E-value=13 Score=39.28 Aligned_cols=30 Identities=33% Similarity=0.237 Sum_probs=24.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|+. |-|.|||-+++=.++..|-.|++|.||
T Consensus 6 v~~-KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 6 IYG-KGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EeC-CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 343 789999987777777678899999988
No 270
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=57.20 E-value=12 Score=39.23 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=23.3
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
|=|.|||-+++-.|+..|..|++|.||=-
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 78999998777666667889999998843
No 271
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=57.14 E-value=13 Score=41.60 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=25.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
|+--|=|+|||.+++-.|+..|..|+.|.+|=-
T Consensus 109 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 141 (387)
T TIGR03453 109 VTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDL 141 (387)
T ss_pred EEccCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 456788999998766666667889999998854
No 272
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=56.05 E-value=15 Score=37.58 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=23.6
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
-+.|+|||.++.-.+...|-.|+.|++|...
T Consensus 6 g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 6 GKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3689999976555555567889999998864
No 273
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=56.02 E-value=30 Score=34.74 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=47.6
Q ss_pred cCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 326 DLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 326 d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
++--.+|.+.++.+..++.-|.+-.+.|.+||+++.+....+.+.+.|++.|++
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 444577999999999999999999999999999999888889999999888765
No 274
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=56.01 E-value=15 Score=37.58 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=24.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
++-.+-|.|||.+++-.|+..|..|+.|.+|=-
T Consensus 5 v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~ 37 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVALAKLGKKVLALDA 37 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678999998776666656778888888744
No 275
>PRK10037 cell division protein; Provisional
Probab=55.92 E-value=14 Score=38.42 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
++--|=|.|||.+++-.++..|..|+.|.+|=-..
T Consensus 6 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 34456799999876666666788999999995433
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.07 E-value=20 Score=43.21 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.9
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
++.++||||||.|
T Consensus 124 r~KViIIDEah~L 136 (700)
T PRK12323 124 RFKVYMIDEVHML 136 (700)
T ss_pred CceEEEEEChHhc
Confidence 6889999999987
No 277
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=54.92 E-value=13 Score=46.34 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=12.1
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
...++||||+|.+.
T Consensus 869 ~v~IIILDEID~L~ 882 (1164)
T PTZ00112 869 NVSILIIDEIDYLI 882 (1164)
T ss_pred cceEEEeehHhhhC
Confidence 67799999999875
No 278
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=54.73 E-value=26 Score=33.88 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEEeC
Q 005155 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNA 385 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~----gi~~~vLnA 385 (711)
+...+...++..+.+..++|..|+|.|.+.+.++.|-++|-.. -|||.....
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~ 65 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE 65 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC
Confidence 4667888899999999999999999999999999999999663 589886443
No 279
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=54.31 E-value=13 Score=39.20 Aligned_cols=27 Identities=37% Similarity=0.283 Sum_probs=23.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|-|.|||-+++-.|+..|..|++|.||
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999987777777778999999998
No 280
>PHA02518 ParA-like protein; Provisional
Probab=54.16 E-value=16 Score=36.18 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=24.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+--|=|.|||.+++-.++..|..|+.|.+|--.
T Consensus 6 ~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 6 LNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 445679999986666555567889999988554
No 281
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=54.13 E-value=42 Score=39.54 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred eEEecCCCcHH-HHHHHHHHH---HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 19 IAEMKTGEGKT-LVSTLAAYL---NALTGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 19 IaEm~TGEGKT-Lva~Lpa~l---~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+..|.=|-||| ++|++..|. +.+.|..+.|+.+|..=|..-+..++......
T Consensus 90 fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~ 145 (546)
T COG4626 90 FIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVKRD 145 (546)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHHhC
Confidence 68899999998 456566552 34578899999999988887777666555433
No 282
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=53.97 E-value=32 Score=42.64 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=12.1
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+++++||||+|.|
T Consensus 120 ~~KV~IIDEad~l 132 (824)
T PRK07764 120 RYKIFIIDEAHMV 132 (824)
T ss_pred CceEEEEechhhc
Confidence 6889999999998
No 283
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=53.95 E-value=68 Score=37.65 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=65.3
Q ss_pred EecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhc--------CCeEEEEcCCCC-----HHH
Q 005155 21 EMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFL--------GLSVGLIQRGMI-----PEE 85 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~L--------GLtv~~i~~~~~-----~~~ 85 (711)
+=.-|+|||.+.++-|...-. ...++.+-.-|..|+..--.-..+||-.. .+-+.+.-+|.+ ..-
T Consensus 182 rGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~ 261 (660)
T COG3972 182 RGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMY 261 (660)
T ss_pred hcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHH
Confidence 334699999988887762222 23468888899999998888888887322 223344444433 222
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
++.+--..|.|+-.+. +||.+-..+-.... ... -+++++|||.-.
T Consensus 262 ~~~~~~~~~~fsg~g~-~F~~aC~eli~~~~--~~~---~yD~ilIDE~QD 306 (660)
T COG3972 262 RYICHYYEIPFSGFGN-GFDAACKELIADIN--NKK---AYDYILIDESQD 306 (660)
T ss_pred HHHhcccccccCCCCc-chHHHHHHHHHhhh--ccc---cccEEEeccccc
Confidence 3333333688884443 48887655433211 122 467777777643
No 284
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=53.93 E-value=14 Score=41.47 Aligned_cols=32 Identities=41% Similarity=0.238 Sum_probs=26.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|+-.|=|.|||-+++-.|+..|..|++|.||=
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 66788999999876666666789999999883
No 285
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=53.93 E-value=19 Score=32.64 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=24.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~Ndy 54 (711)
++..|-|.|||.++.-.+...+.. |+.|+++=.+..
T Consensus 4 ~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 4 FIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 456789999998544444335665 999999955443
No 286
>PRK08760 replicative DNA helicase; Provisional
Probab=53.80 E-value=53 Score=38.07 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHH
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEER 86 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLtv~~i-~~~~~~~~r 86 (711)
+..|. |+-..+|-|||..++--|.-.|+. |++|.+++. .+.|+.|-.... -+++...+ .+.++.++.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~------s~i~~~~i~~g~l~~~e~ 299 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN------GRINAQRLRTGALEDEDW 299 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh------CCCcHHHHhcCCCCHHHH
Confidence 45566 677889999998666555434454 888988764 223444422221 12222211 233444432
Q ss_pred H-------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 87 ~-------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
. ......+.+-....+..+.++..+..- .... +++++|||=..-|
T Consensus 300 ~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l---~~~~---~~~lVvIDyLql~ 351 (476)
T PRK08760 300 ARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRL---KREH---DLGLIVIDYLQLM 351 (476)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEecHHhc
Confidence 2 122345655656667778887765421 1122 6889999976533
No 287
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=53.79 E-value=1.3e+02 Score=36.30 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH--h---cCCCccEEEE
Q 005155 336 RGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--Q---AGRKYAITIS 409 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia--~---AG~~G~VTIA 409 (711)
..+..++++++.+... .+--+||-|+|-...+.+++.|.. .++..+|--+... +-++++. + ++..++|.++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~-~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~g 528 (636)
T TIGR03117 452 RTWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVEL-GIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIA 528 (636)
T ss_pred hhHHHHHHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHh-hcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEe
Confidence 3455667777766653 455899999999999999999976 4555555432110 1122222 1 2236899999
Q ss_pred cCCCcCCcce
Q 005155 410 TNMAGRGTDI 419 (711)
Q Consensus 410 TnmAGRGTDI 419 (711)
|.-+.=|+|+
T Consensus 529 t~sfweGvDv 538 (636)
T TIGR03117 529 AGGAWTGIDL 538 (636)
T ss_pred CCcccccccc
Confidence 9999999999
No 288
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=53.31 E-value=1.3e+02 Score=33.18 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCeEEECC----CchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHH
Q 005155 92 CDITYTNN----SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAE 167 (711)
Q Consensus 92 ~DI~YgT~----~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~ 167 (711)
.|+.+..+ ..++.|-+|+-...-.....+. +.+++|||+||.|- -..++.+.+
T Consensus 74 PD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~---~~kV~iI~~ae~m~--------------------~~AaNaLLK 130 (319)
T PRK06090 74 PDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLN---GYRLFVIEPADAMN--------------------ESASNALLK 130 (319)
T ss_pred CCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccC---CceEEEecchhhhC--------------------HHHHHHHHH
Confidence 35655543 2466777775322111111233 68999999999993 136788889
Q ss_pred HcccC
Q 005155 168 LLVQG 172 (711)
Q Consensus 168 ~l~~~ 172 (711)
.|+++
T Consensus 131 tLEEP 135 (319)
T PRK06090 131 TLEEP 135 (319)
T ss_pred HhcCC
Confidence 99864
No 289
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=53.02 E-value=24 Score=39.88 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCCchhHHHHHH-HHhCCC--eEE--ecCCCcHHHHHHHHHHHHHHc
Q 005155 1 MRHFDVQIIGGA-VLHDGS--IAE--MKTGEGKTLVSTLAAYLNALT 42 (711)
Q Consensus 1 ~rp~dvQl~g~~-~L~~G~--IaE--m~TGEGKTLva~Lpa~l~AL~ 42 (711)
++|-.++-..++ +|++=. ++- =+-|+|||+-|+.++..+.+.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 356666666666 444433 222 257999999887777655553
No 290
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=52.81 E-value=16 Score=41.19 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=26.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|+--|=|.|||-+++-.|+..|+.|++|.||=
T Consensus 111 v~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 111 VMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 66778999999876666666789999999884
No 291
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=52.61 E-value=17 Score=38.28 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+-|+|||.+++-.|...|..|++|.+|=.+
T Consensus 108 vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 108 VVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5556789999987776666678889999998663
No 292
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=52.54 E-value=17 Score=39.52 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=24.8
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
|-|-|||-+++..|+..|-.|+.|.||+....
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 57999998766666667889999999988653
No 293
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=51.43 E-value=19 Score=37.34 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=23.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|+. |=|.|||-+++-.|+..|..|++|.+|=
T Consensus 6 v~~-KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 6 IYG-KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred EEe-CCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344 7899999866666665678999999883
No 294
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.05 E-value=12 Score=44.36 Aligned_cols=113 Identities=24% Similarity=0.188 Sum_probs=54.8
Q ss_pred EEecCCCcHHHH-HHHHHHHHHHcCCCEE--EEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHh------cc
Q 005155 20 AEMKTGEGKTLV-STLAAYLNALTGEGVH--VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRS------NY 90 (711)
Q Consensus 20 aEm~TGEGKTLv-a~Lpa~l~AL~G~~Vh--VvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~------aY 90 (711)
-+|.||+|||++ |+|.+++ --.|.+-. .|-.+..|-+-.-.-.-++..-.=.+-.+.+++...+.|+- .-
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 479999999986 4444442 23565433 45555566655444333332211112122222222222221 11
Q ss_pred CCCeEEECCCchhhHHHHHhhhc-chhhhhcCCCCCccEEEeechhhh
Q 005155 91 RCDITYTNNSELGFDYLRDNLAA-NSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 91 ~~DI~YgT~~elgfDyLrD~l~~-~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+..|.++|.--|-.|+.|..=.. ..++.-- .-=+.|-||+|.+
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~----~klvfl~deahhl 124 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKD----QKLVFLADEAHHL 124 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhh----CceEEEechhhhh
Confidence 23689999887756665542111 1111110 1125677999986
No 295
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.97 E-value=34 Score=43.63 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=40.3
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCH----HHHHHHHHHHHHHhhhc
Q 005155 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~Nd----yLA~RDae~~~~~y~~L 70 (711)
+|. ++|+--|+|||-+.+....-.-+.| ..+.|||.|+ +|..|..+.+...+..+
T Consensus 9 ~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~rL~~~~~~~ 73 (1087)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRAL 73 (1087)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 9999999999976554443223333 4789999876 78888888887777655
No 296
>PRK05595 replicative DNA helicase; Provisional
Probab=50.75 E-value=59 Score=37.11 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=61.0
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~N---dyLA~RDae~~~~~y~~LGLtv~~i~-~~~~~~~r~ 87 (711)
..|. |.=..||-|||..++--+.-.|+ .|++|.+++.- +.|+.|-.. ...|++...+. +.++..+..
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a------~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLC------SEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHHH
Confidence 3455 56788999999765555542354 59999988764 455555222 22344433222 223333221
Q ss_pred hc-------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 ~a-------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.. -...+-.-....+..+.++..+..- .... +++++|||=..-|
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~---~~~~---~~~~vvIDylql~ 323 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRL---KIEH---GIDMILIDYLQLM 323 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEeHHHhc
Confidence 11 1224444455556677777665431 1123 6899999977644
No 297
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=50.63 E-value=22 Score=34.12 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=23.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
+--+=|.|||-+++-.++..+..|+.|.+|
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 445679999976666665567889999988
No 298
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.56 E-value=41 Score=38.66 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=33.3
Q ss_pred cCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.||.|||.+++-.|. +..-.|+.|+++|.-.|=+.- .+++....+.+|+.+.
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA-~eQLk~yAe~lgvp~~ 283 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-IEQLKRYADTMGMPFY 283 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH-HHHHHHHHHhcCCCee
Confidence 799999976555554 334568899999986643321 2344445577777653
No 299
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.36 E-value=85 Score=36.21 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=40.5
Q ss_pred CCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCH
Q 005155 24 TGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP 83 (711)
Q Consensus 24 TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~ 83 (711)
-|+|||-+ +=|+.|+.- .|+.|.+|+.--|=.. -.++++.+.+..|+.+--...+.+|
T Consensus 109 QGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpA-A~eQL~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPA-AIEQLKQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred cCCChHhHHHHHHHHHHH-cCCceEEEecccCChH-HHHHHHHHHHHcCCceecCCCCCCH
Confidence 49999975 556666655 9999999988665332 2467788888888887655334443
No 300
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=50.29 E-value=21 Score=34.37 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=22.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|.=..||+|||.+++-.+...+-.|+.|.++
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3446799999987665555456788888875
No 301
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=50.23 E-value=18 Score=38.04 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=25.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
-+-|+|||.+++-.+...|-.|+.|.+|....
T Consensus 7 gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 7 GKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 36899999876666666788999999998754
No 302
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=50.21 E-value=14 Score=40.94 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=34.5
Q ss_pred hCCC--eEEecCCCcHHHHH-HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 15 HDGS--IAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva-~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.+|. .+.=.=|.|||.+. ++-.++ ...|+.|.++.|+--=|... ..=.-++.+|+|.+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~i-~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFNI-PGGRTIHSFFGIPIN 81 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHhc-cCCcchHHhcCcccc
Confidence 4454 44556789999643 333332 23566777777776555433 112356788888765
No 303
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=50.06 E-value=20 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=24.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
=|-|.|||.+++-.|+..|-.|++|.+|=-
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVllvD~ 37 (273)
T PRK13232 8 GKGGIGKSTTTQNLTAALSTMGNKILLVGC 37 (273)
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCeEEEec
Confidence 378999999777777767889999999833
No 304
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=49.96 E-value=21 Score=35.67 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=22.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
+..=.||.|||..+...+.-..-.|..|..++..+-
T Consensus 51 ~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 51 ILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred EEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 677789999997555444322237888888887543
No 305
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=49.91 E-value=21 Score=36.98 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCCEEEEe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A-L~G~~VhVvT 50 (711)
|+..|=|.|||.+++-.++..| ..|++|.+|=
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 6777889999988777777677 6668998873
No 306
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.48 E-value=76 Score=38.48 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCC--CCeEEEeCCCcchHhHHHHH-HhcCCCccEEEEcCCC
Q 005155 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG--IPHNVLNARPKYAAREAETV-AQAGRKYAITISTNMA 413 (711)
Q Consensus 337 ~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~g--i~~~vLnA~~~~~~~Ea~Ii-a~AG~~G~VTIATnmA 413 (711)
.|-+..++.+.+....|+.|||.++.+.....+.+.|++.. -++.++|++....++...-. ...| ...|.|-|..|
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViGtRSA 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVGTRSA 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEEccee
Confidence 45556666777777899999999999999999999998753 57889999755555544433 3555 34677887654
No 307
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=49.45 E-value=72 Score=32.37 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 16 DGSIAE--MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.|.+.+ =..|.|||..+.-.++-.+..|..|..++.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455444 4799999986665565445678888888876
No 308
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=49.42 E-value=52 Score=38.51 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=69.2
Q ss_pred CCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCCHH-HHHhccCCC
Q 005155 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMIPE-ERRSNYRCD 93 (711)
Q Consensus 16 ~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv~~i~~~~~~~-~r~~aY~~D 93 (711)
.|-|.-=.-|-|||+-+. +++|+-+.+.+-.||+|.-.|.+ |...+-++. |-.-..++.|.... .-++--+-|
T Consensus 205 ~GGiLADEMGMGKTIQtI-aLllae~~ra~tLVvaP~VAlmQ----W~nEI~~~T~gslkv~~YhG~~R~~nikel~~YD 279 (791)
T KOG1002|consen 205 AGGILADEMGMGKTIQTI-ALLLAEVDRAPTLVVAPTVALMQ----WKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYD 279 (791)
T ss_pred ccceehhhhccchHHHHH-HHHHhccccCCeeEEccHHHHHH----HHHHHHHhccCceEEEEEecccccCCHHHhhcCc
Confidence 455655567999998432 22345789999999999988865 766665544 44444555553321 222334458
Q ss_pred eEEECCCchhhHHHHHhhhcch------hhhhcCCCCCccEEEeechhhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANS------EQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~------~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+|..|-+-+.--|=+.+-..+. +..++ +.=.++-+|+||||.|=
T Consensus 280 vVLTty~vvEs~yRk~~~GfrrKngv~ke~SlL-Hsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 280 VVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLL-HSIKFYRIILDEAHNIK 329 (791)
T ss_pred EEEEecHHHHHHHHhccccccccCCcccccchh-hhceeeeeehhhhcccc
Confidence 9988876665555443222111 11111 11156779999999974
No 309
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=49.20 E-value=55 Score=33.85 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=26.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE-ecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV-TVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv-T~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.-=..|.|||.++-.. ++.+....+.++ ..|..+... +-+..+...+|++
T Consensus 47 ~l~G~~G~GKTtl~~~l--~~~l~~~~~~~~~~~~~~~~~~--~~l~~i~~~lG~~ 98 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNL--LKRLDQERVVAAKLVNTRVDAE--DLLRMVAADFGLE 98 (269)
T ss_pred EEEcCCCCCHHHHHHHH--HHhcCCCCeEEeeeeCCCCCHH--HHHHHHHHHcCCC
Confidence 56678999999655533 345543333321 122222222 3455666777775
No 310
>PRK07413 hypothetical protein; Validated
Probab=48.88 E-value=49 Score=37.43 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=22.2
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCC------CEEEE
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGE------GVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL-~G~------~VhVv 49 (711)
+.++-||.||-- +|+|-.++.|+ .|. +|.|+
T Consensus 21 li~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~iv 59 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLL 59 (382)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEE
Confidence 788999998843 45555556776 576 88876
No 311
>PRK10818 cell division inhibitor MinD; Provisional
Probab=48.56 E-value=23 Score=37.02 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=26.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|+--+-|.|||-+++-.|+..|..|+.|.+|=-.
T Consensus 7 v~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D 40 (270)
T PRK10818 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 (270)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4556789999988777777678888888877553
No 312
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.54 E-value=25 Score=40.99 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.7
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.+
T Consensus 121 ~~KV~IIDEah~L 133 (484)
T PRK14956 121 KYKVYIIDEVHML 133 (484)
T ss_pred CCEEEEEechhhc
Confidence 6789999999987
No 313
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=48.47 E-value=18 Score=37.98 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=22.3
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|=|.|||.+++-.|+..|..|+.|.||
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 679999987777777678889988887
No 314
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.46 E-value=26 Score=40.92 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEEC
Q 005155 32 STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTN 98 (711)
Q Consensus 32 a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT 98 (711)
|++++++.-+.-..+.|.+-+.. ++..|.=++..|||++|-+.|+++.++|-.+. .+||.++|
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk----~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT 483 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKK----QAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT 483 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHH----HHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEe
Confidence 45566556666777888887755 45569999999999999999999988876552 47888777
No 315
>PRK13236 nitrogenase reductase; Reviewed
Probab=48.32 E-value=20 Score=38.63 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=24.6
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|-|.|||.+++-.|+..|..|++|.+|=-.
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 689999998777777778899999998443
No 316
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.25 E-value=27 Score=31.47 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=50.9
Q ss_pred ccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeC-hhHHHHHHHHHHHHhhhcCCcEEEE---ecchhh
Q 005155 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLVG---STSVEN 365 (711)
Q Consensus 290 kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t-~~~K~~aIi~ei~~~~~~grPVLV~---t~Si~~ 365 (711)
++.|+...-....+.+.+.|+.+ ...+.........+|.++.. .......++.. +.+.|.+|++= +.|.++
T Consensus 27 ~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~---~l~~g~~v~~EKP~~~~~~~ 101 (120)
T PF01408_consen 27 EVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSSHAEIAKK---ALEAGKHVLVEKPLALTLEE 101 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGGHHHHHHH---HHHTTSEEEEESSSSSSHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcchHHHHHH---HHHcCCEEEEEcCCcCCHHH
Confidence 34455555444556677777777 33333333333345655543 33333333333 34577788884 677888
Q ss_pred HHHHHHHHHHCCCCeEE
Q 005155 366 SEYLSDLLKQQGIPHNV 382 (711)
Q Consensus 366 SE~Ls~~L~~~gi~~~v 382 (711)
++.+.+..++.|....|
T Consensus 102 ~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 102 AEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 88888888888776544
No 317
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=48.17 E-value=22 Score=38.28 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
.|-|.|||.+++=.++..|..|++|.+|=
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999876666666788999999983
No 318
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.96 E-value=51 Score=39.00 Aligned_cols=53 Identities=28% Similarity=0.221 Sum_probs=31.3
Q ss_pred cCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.||.|||-++...+...+.. |+.|.+++...|=.- -.+++....+.+|+.+..
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRig-A~EQLk~ya~iLgv~v~~ 412 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG-GREQLHSYGRQLGIAVHE 412 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccccc-HHHHHHHhhcccCceeEe
Confidence 49999997654444334444 578999987554221 124444455667766543
No 319
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=47.78 E-value=70 Score=35.88 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEc--CCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST--NMA 413 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIAT--nmA 413 (711)
-+|+..+++++++..+.|-||||=-.... ..|++.||+.+++-...+--..=++-+.+||- ..|.|+| |-+
T Consensus 7 ~~~~~~~~~~l~~~~~~~~~ilveg~~d~------~~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi-~rVVi~~D~d~~ 79 (360)
T PRK14719 7 LEKLLLIIDDLKLLAEKGIPILVEGPNDI------LSLKNLKINANFITVSNTPVFQIADDLIAENI-SEVILLTDFDRA 79 (360)
T ss_pred HHHHHHHHHHHHHhhhCCCEEEEEcchHH------HHHHHcCCCCcEEEEeCCchHHHHHHHHHcCC-CEEEEEECCCCC
Confidence 35777888999888888999998665544 34788899766554421111223444557784 4899999 468
Q ss_pred cCC
Q 005155 414 GRG 416 (711)
Q Consensus 414 GRG 416 (711)
|||
T Consensus 80 G~~ 82 (360)
T PRK14719 80 GRV 82 (360)
T ss_pred CCc
Confidence 888
No 320
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.73 E-value=1.4e+02 Score=36.28 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=42.9
Q ss_pred chhHHHHHHH----HhCCC--eEEecCCCcHHHHHHHHHHHHHH--cC--CCEEEEecCHHHHHHHHHHHHHH
Q 005155 4 FDVQIIGGAV----LHDGS--IAEMKTGEGKTLVSTLAAYLNAL--TG--EGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 4 ~dvQl~g~~~----L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--~G--~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
||.|..-+-. |-+|. ++|+.||.|||++.+.|++ .+. .+ .++..+|.+..=-.+-.++++.+
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL-~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLIL-AYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHH-HHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 7778765543 33444 9999999999998888886 433 23 45777777666666666666664
No 321
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=47.30 E-value=22 Score=37.60 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=22.8
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.-=++|.|||.. +++.-.+. -.|..|.++|.++
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~e 143 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPD 143 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHH
Confidence 5556799999964 44444333 4578888888754
No 322
>CHL00175 minD septum-site determining protein; Validated
Probab=47.18 E-value=23 Score=37.32 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=23.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|+--+-|.|||.+++-.++..+-.|+.|.+|
T Consensus 20 v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 20 ITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4556899999987666665567788888887
No 323
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=46.96 E-value=15 Score=45.13 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHh------CCCeEEecCCCcHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLH------DGSIAEMKTGEGKTLVSTLA 35 (711)
Q Consensus 2 rp~dvQl~g~~~L~------~G~IaEm~TGEGKTLva~Lp 35 (711)
.||++|+.=..-++ +.-+.|-.||.||||..+..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 48999987766432 23399999999999864443
No 324
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=46.71 E-value=65 Score=37.04 Aligned_cols=13 Identities=0% Similarity=0.271 Sum_probs=10.8
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
..+++||||+|.+
T Consensus 202 ~~dvLiIDDiq~l 214 (445)
T PRK12422 202 NVDALFIEDIEVF 214 (445)
T ss_pred cCCEEEEcchhhh
Confidence 6788999998876
No 325
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.62 E-value=41 Score=39.31 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred CeEEECC-CchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 93 DITYTNN-SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 93 DI~YgT~-~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
||+...+ +..+.|-+|+-+..-....+.. ...++||||||.+
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~---~~KVvIIDEah~L 128 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISS---KFKVYIIDEVHML 128 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccC---CceEEEEeChHhC
Confidence 4554433 2455666665432211112233 6789999999875
No 326
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=46.54 E-value=34 Score=28.56 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=19.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
+.|+|||.++...+...+-.|..|.++-
T Consensus 7 ~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 7 KGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4599999766555554455788888777
No 327
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=46.47 E-value=70 Score=33.60 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=42.4
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 332 FATARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grP---VLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
+.+..+....|+++|.+....|-| |-|.|++-..+..+++.|.+.|||+.+...
T Consensus 53 ~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~ 109 (351)
T PF13361_consen 53 FDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGS 109 (351)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSS
T ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhcceeEeccc
Confidence 556666677899999887655544 899999999999999999999999865443
No 328
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=46.43 E-value=24 Score=36.73 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
++.-|=|.|||-+++..++..+..|+.|.||=.
T Consensus 6 v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 38 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDGKRVALFEA 38 (231)
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 345577999998877777777889999998844
No 329
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=46.30 E-value=17 Score=41.82 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=30.1
Q ss_pred cCCCeEEECCCchhhHHHHHhhhc----chhhhhcCCCCCccEEEeechhhhhh
Q 005155 90 YRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 90 Y~~DI~YgT~~elgfDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
|++||++++| || ||--+.. ..+.-.+. ++.++|||-+|.|+.
T Consensus 130 y~SDIIiASP--LG---Lr~~i~~~~~~~~d~DFLS---SIEv~iiD~ad~l~M 175 (442)
T PF06862_consen 130 YSSDIIIASP--LG---LRMIIGEEGEKKRDYDFLS---SIEVLIIDQADVLLM 175 (442)
T ss_pred ccCCEEEECh--HH---HHHHhccccccccccchhh---eeeeEeechhhHHHH
Confidence 6789999998 44 3544442 22334566 899999999999984
No 330
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=46.15 E-value=22 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
-+-|+|||.+++-.++..|..|+.|.+|-.
T Consensus 38 gkgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 38 GKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 488999998777777667888999998844
No 331
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=46.07 E-value=11 Score=40.11 Aligned_cols=45 Identities=40% Similarity=0.676 Sum_probs=39.6
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
-..+|..-|-.||.|+ |||| ||-+||.....|..+||=+|+.+-|
T Consensus 170 ~Gaev~A~G~i~v~g~-----------lrG~a~AG~~g~~~a~I~~~~~~~elv~IaG 216 (248)
T PRK04596 170 AGAEVIADGSIHIYGT-----------LRGRALAGAQGNPDARIFCRDFHAELVAIAG 216 (248)
T ss_pred CCCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeecCCccEEEEcc
Confidence 3568899999999998 4555 7999999999999999999999877
No 332
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=46.02 E-value=1.2e+02 Score=33.99 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=24.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
+.--.+|.|||..+.-.+...+-.|..|..++..+.
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 455579999998766555545556778888876543
No 333
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.85 E-value=38 Score=42.34 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.8
Q ss_pred CccEEEeechhhhhh
Q 005155 125 PFHFAIVDEVDSVLI 139 (711)
Q Consensus 125 ~~~~aIVDEvDs~Li 139 (711)
++.++||||||.|--
T Consensus 119 k~KViIIDEAh~LT~ 133 (944)
T PRK14949 119 RFKVYLIDEVHMLSR 133 (944)
T ss_pred CcEEEEEechHhcCH
Confidence 678999999998843
No 334
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=45.59 E-value=12 Score=39.82 Aligned_cols=45 Identities=36% Similarity=0.591 Sum_probs=40.7
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
...+|..-|=.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 171 ~GAEViAdGnIhVyG~-----------LRGrA~AGa~Gd~~ArIf~~~l~aelvsIAg 217 (249)
T PRK00339 171 PGAELLADGNIHVYGP-----------MRGRALAGIKGDTKARIFCQQLEAELVSIAG 217 (249)
T ss_pred CCCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCccEEEEcc
Confidence 4578999999999998 6787 6999999999999999999999876
No 335
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=45.45 E-value=49 Score=36.51 Aligned_cols=90 Identities=26% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCcHH-HHHHHHHHHHHH--------cCC-----C-EEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC---HHHH
Q 005155 25 GEGKT-LVSTLAAYLNAL--------TGE-----G-VHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI---PEER 86 (711)
Q Consensus 25 GEGKT-Lva~Lpa~l~AL--------~G~-----~-VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~---~~~r 86 (711)
|+||| +|..|.-+|.+- .|. + ..+|+++. -|..--++---+.+.++..| +++.-- .+.-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~~~V--~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLPVPV--IVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcCCcE--EEeCcHHHHHHHH
Confidence 99999 566666665543 111 2 77777777 33332333344566777333 333211 1111
Q ss_pred HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeec
Q 005155 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDE 133 (711)
Q Consensus 87 ~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDE 133 (711)
...+.+||+... |-|++. .+.| .++++++|-
T Consensus 124 ~~~~~~dviilD----------DGfQh~---~L~r---Dl~Ivl~D~ 154 (326)
T PF02606_consen 124 LKEFPADVIILD----------DGFQHR---RLKR---DLDIVLVDA 154 (326)
T ss_pred HHHCCCCEEEEc----------CCcccc---cccC---CcEEEEEeC
Confidence 223558888654 333332 2445 999999997
No 336
>PRK12377 putative replication protein; Provisional
Probab=45.15 E-value=28 Score=36.88 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=24.5
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEecCHHHH
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYLA 56 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~NdyLA 56 (711)
+.-=.+|.|||- +.++.-.+ .-.|..|.+++.++.+.
T Consensus 105 ~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 105 VFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVVTVPDVMS 142 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHcCCCeEEEEHHHHHH
Confidence 555579999995 44444432 34688998888866444
No 337
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.10 E-value=24 Score=38.06 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=23.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
|=|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999877777776788999999873
No 338
>PRK05748 replicative DNA helicase; Provisional
Probab=44.67 E-value=1.2e+02 Score=34.76 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT---~NdyLA~RDae~~~~~y~~LGLtv~~i~-~~~~~~~r~ 87 (711)
..|. |.=..||.|||..++=-++-.|. .|++|.+++ +.+.|+.|-.. ..-+++...+. +.++..+..
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~------~~~~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLC------AEGNIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH------HhcCCCHHHhhcCCCCHHHHH
Confidence 4565 67788999999766555543355 488998886 34455555322 12233333222 334443321
Q ss_pred h-------ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 S-------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 ~-------aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
. .-...+-+-....+..+.++..+.. ..... .+++++|||=..-|
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~----~~~~~-~~~~~vvIDyL~li 326 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRR----LAQEH-GGLGLILIDYLQLI 326 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH----HHHhc-CCCCEEEEccchhc
Confidence 1 1122343333444666777765432 11110 15789999976643
No 339
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=44.46 E-value=1.1e+02 Score=33.86 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=52.5
Q ss_pred chhHHHHHHH-Hh-------CCC-eEEecCCCcH---HHHHHHHHHHHHHcCCCEEEEec-CHHHHH-HHHHHHHHHhhh
Q 005155 4 FDVQIIGGAV-LH-------DGS-IAEMKTGEGK---TLVSTLAAYLNALTGEGVHVVTV-NDYLAQ-RDAEWMERVHRF 69 (711)
Q Consensus 4 ~dvQl~g~~~-L~-------~G~-IaEm~TGEGK---TLva~Lpa~l~AL~G~~VhVvT~-NdyLA~-RDae~~~~~y~~ 69 (711)
+|+|.++=+. +. +|. |+-+-+|-|| +.|+---+.+.+..|-.|.+++| -.|.-. ...++...+...
T Consensus 148 HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 227 (335)
T PRK04523 148 HPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAE 227 (335)
T ss_pred ChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHH
Confidence 7899888653 21 232 5556777876 23322222234567999999999 444222 123344455566
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
.|.++... . ++ ....-+|||+|.+.
T Consensus 228 ~g~~~~~~-~--d~--~ea~~~aDvvy~~~ 252 (335)
T PRK04523 228 SGGSLTVS-H--DI--DSAYAGADVVYAKS 252 (335)
T ss_pred cCCeEEEE-c--CH--HHHhCCCCEEEece
Confidence 67766542 1 22 23456899999976
No 340
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.11 E-value=41 Score=37.93 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.6
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
...+++|||+|++-
T Consensus 92 ~~~vL~IDEi~~l~ 105 (413)
T PRK13342 92 RRTILFIDEIHRFN 105 (413)
T ss_pred CceEEEEechhhhC
Confidence 56799999999873
No 341
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=43.80 E-value=43 Score=29.38 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
...+||+|.|.+-..|...+..|++.|+....|.++
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG 94 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGG 94 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCc
Confidence 577899999999999999999999999985555553
No 342
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=43.74 E-value=1e+02 Score=34.83 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=63.2
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHH
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEER 86 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT---~NdyLA~RDae~~~~~y~~LGLtv~~i~-~~~~~~~r 86 (711)
+..|. |.-..+|.|||..++-.+.-.|+ .|.+|.+++ +.+.|+.|-.. ...|++...+. +.++.++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~------~~~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLA------SKSGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHH
Confidence 34566 66778999999765555543343 588998887 34455444322 23455443332 23443332
Q ss_pred H-------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 87 ~-------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
. .....++.+...+.+-.+.++..+..- ..+ ..+++++|||=.+-|
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~----~~~-~~~~~lvvIDyLql~ 317 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRI----KRK-KGGLDLIVVDYIQLM 317 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH----HHh-cCCCCEEEEeccccc
Confidence 1 112346666666677778887754421 111 115789999965554
No 343
>PRK08116 hypothetical protein; Validated
Probab=43.57 E-value=26 Score=37.38 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=23.0
Q ss_pred CeEEecCCCcHHHHHH-HHHHHHHHcCCCEEEEecCHHH
Q 005155 18 SIAEMKTGEGKTLVST-LAAYLNALTGEGVHVVTVNDYL 55 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~-Lpa~l~AL~G~~VhVvT~NdyL 55 (711)
-+.-=.+|.|||..+. +.-.+.. .|..|..++.++.|
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~~ll 154 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFPQLL 154 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHHHH
Confidence 3666679999996443 3332221 47888877765544
No 344
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=43.32 E-value=29 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=23.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVv 49 (711)
|+ -|-|.|||-+++=.++..|. .|++|.+|
T Consensus 7 v~-~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 7 IY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred EE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 46 48999999876666665676 59999988
No 345
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=42.77 E-value=30 Score=41.25 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=36.2
Q ss_pred eEEecCCCcHHHHHHHHHH-H-----HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAY-L-----NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~-l-----~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
|+|=.-|+|||-+|+=-++ | --|++++|.|+.||+-++. -+..+.-.||..
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFle----Yis~VLPeLGe~ 286 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLE----YISRVLPELGEE 286 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHH----HHHHhchhhccC
Confidence 7888899999987664433 2 1357789999999998876 344455555554
No 346
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=42.63 E-value=1.4e+02 Score=33.65 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=57.8
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLtv~~i~-~~~~~~~r~ 87 (711)
..|. +.-..+|.|||..+.=-++-.|. .|.+|.+++. .+.++.|-. ....|++...+. +.++.++..
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~------~~~~~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRML------SSESRVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHH------HHhcCCCHHHhccCCCCHHHHH
Confidence 3455 67788999999765544543355 5888888764 233443321 122344433322 234443221
Q ss_pred -------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 -------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 -------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
......+.+-....+..+.++..+..- .... +++++|||=...|
T Consensus 267 ~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~i 317 (434)
T TIGR00665 267 KLTSAAGKLSEAPLYIDDTPGLTITELRAKARRL---KREH---GLGLIVIDYLQLM 317 (434)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 111223333333445567777665421 1112 6889999966544
No 347
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.44 E-value=40 Score=40.47 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=20.8
Q ss_pred hhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 102 lgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.+.|-+|+-+..-....++. +..++||||||.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~---~~KViIIDEad~L 133 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQA---RWKVYVIDECHML 133 (620)
T ss_pred CCHHHHHHHHHHHhhChhcC---CceEEEEECcccc
Confidence 45677776553221112333 5789999999987
No 348
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=42.33 E-value=1.1e+02 Score=33.98 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=44.9
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
.|+++.|++++..-|++-++.+... ..++.+..+.+.++..+|...-..+|+++|.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTd 326 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAMQFDILLGTS 326 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhccCCEEEEec
Confidence 5788999999998888777777652 2356788888889988887777889999996
No 349
>PRK07952 DNA replication protein DnaC; Validated
Probab=42.08 E-value=31 Score=36.44 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCeEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEecCHH
Q 005155 17 GSIAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 17 G~IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
|-+.-=.+|.|||. +.++..++ .-.|+.|.+++..+-
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~it~~~l 138 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLIITVADI 138 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEEHHHH
Confidence 33666789999995 55555543 346899988876443
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.92 E-value=29 Score=41.64 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.3
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
++.++||||||.|-
T Consensus 124 ~~KV~IIDEvh~Ls 137 (618)
T PRK14951 124 RFKVFMIDEVHMLT 137 (618)
T ss_pred CceEEEEEChhhCC
Confidence 68999999999873
No 351
>PF12846 AAA_10: AAA-like domain
Probab=41.77 E-value=65 Score=33.29 Aligned_cols=51 Identities=24% Similarity=0.095 Sum_probs=31.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
++-=.||.|||..+...+.-.+..|..|.|+=+....+. +.+..|..+..+
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~--------~~~~~~~~~i~~ 55 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP--------LARALGGQYIDI 55 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH--------HHHhcCceEEEe
Confidence 444579999997666555445567888888855543332 444455555433
No 352
>PRK04195 replication factor C large subunit; Provisional
Probab=41.65 E-value=62 Score=37.35 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.7
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+..++||||||.+.
T Consensus 98 ~~kvIiIDEaD~L~ 111 (482)
T PRK04195 98 RRKLILLDEVDGIH 111 (482)
T ss_pred CCeEEEEecCcccc
Confidence 46799999999874
No 353
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=41.59 E-value=33 Score=36.36 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
|..-+-|.|||.+++..+...+..|+.|+++-.
T Consensus 7 i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~ 39 (241)
T PRK13886 7 VLQGKGGVGKSFIAATIAQYKASKGQKPLCIDT 39 (241)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 456788999998666555546778999999843
No 354
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=41.47 E-value=16 Score=38.22 Aligned_cols=29 Identities=28% Similarity=0.176 Sum_probs=22.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|++ |-|.|||.+++-.|+..|..| +|.+|
T Consensus 7 v~~-KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 7 IYG-KGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred EEC-CCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 453 889999987777776566678 78877
No 355
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=41.39 E-value=15 Score=38.89 Aligned_cols=46 Identities=33% Similarity=0.616 Sum_probs=40.2
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhccC
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFSF 606 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~~ 606 (711)
...+|..-|-.||.|+ |||| ||-+||.....|..+||=+|+++-|.
T Consensus 155 ~GAev~A~G~i~v~G~-----------lrG~a~AG~~Gd~~A~If~~~l~aelvsIag~ 202 (235)
T PRK04516 155 QGAELIADGNIHIYAP-----------MRGRALAGAKGDTSARIFIHSMQAELVSVAGI 202 (235)
T ss_pred CCCEEEeCCCEEEEEE-----------ccceEEecCCCCCccEEEeccCCccEEEEccE
Confidence 4578899999999998 4565 79999999999999999999998773
No 356
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=41.25 E-value=79 Score=31.89 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=30.7
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcC------CCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~Lpa~l~AL~G------~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|.+.++ .+|.|||..+...+...+..| .+|..++..+-+ +.+.+..+...++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~---~~~rl~~~~~~~~~ 79 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF---RPERLVQLAVRFGL 79 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC---CHHHHHHHHHHhcc
Confidence 4665544 689999987776665344555 566666654322 13344444444443
No 357
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=41.07 E-value=33 Score=34.63 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=23.5
Q ss_pred ecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCH
Q 005155 22 MKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVND 53 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~Nd 53 (711)
-+-|+|||.+++-.|+..|. .|++|.+|-.+.
T Consensus 43 ~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 43 SLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 36799999866655544564 699999997764
No 358
>PRK11670 antiporter inner membrane protein; Provisional
Probab=41.02 E-value=32 Score=38.50 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyL 55 (711)
|+--|-|+|||-+++-.|+..|-.|++|.+|=-..+-
T Consensus 112 V~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qg 148 (369)
T PRK11670 112 VSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYG 148 (369)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5667889999988777777677789999888655443
No 359
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=40.92 E-value=33 Score=42.86 Aligned_cols=139 Identities=22% Similarity=0.327 Sum_probs=73.4
Q ss_pred CCeEEecCCCcHHH--HHHHHHHHHH--HcCCCEEEEecCHHHHHHHHHHHHHHhhhcC-Ce------EEEEcCCCCHHH
Q 005155 17 GSIAEMKTGEGKTL--VSTLAAYLNA--LTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LS------VGLIQRGMIPEE 85 (711)
Q Consensus 17 G~IaEm~TGEGKTL--va~Lpa~l~A--L~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Lt------v~~i~~~~~~~~ 85 (711)
|.|.-=--|=|||| ++.|-.+|.. |.-++|.||||=..+- .||..|-+|+- +. |.-+..-..+++
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~----NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL----NWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH----HHHHHHHHhcccccccccceeehhhhccChHH
Confidence 44444445889998 2222222221 3346899999976653 69988888773 33 332222234566
Q ss_pred HHhccC---C--CeEEECCCchhhHHHHHhhhcc-----h------hhhhcCCCCCccEEEeechhhhhhhcCCC-----
Q 005155 86 RRSNYR---C--DITYTNNSELGFDYLRDNLAAN-----S------EQLVMRWPKPFHFAIVDEVDSVLIDEGRN----- 144 (711)
Q Consensus 86 r~~aY~---~--DI~YgT~~elgfDyLrD~l~~~-----~------~~~v~r~~R~~~~aIVDEvDs~LiDea~t----- 144 (711)
|.-+.. . .|.+ +|.|..|..-..+ + ..++-. +.+++|-||+|-+=-+.+.+
T Consensus 774 R~~~L~~W~~~ggVmI-----iGYdmyRnLa~gr~vk~rk~ke~f~k~lvdp---GPD~vVCDE~HiLKNeksa~Skam~ 845 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMI-----IGYDMYRNLAQGRNVKSRKLKEIFNKALVDP---GPDFVVCDEGHILKNEKSAVSKAMN 845 (1567)
T ss_pred HHHHHHHHHhcCCEEE-----EehHHHHHHhcccchhhhHHHHHHHHhccCC---CCCeEEecchhhhccchHHHHHHHH
Confidence 653321 1 2221 2445444322211 0 123334 88999999999664443221
Q ss_pred ------ceeccCCC-CCCccchHHHHHHHH
Q 005155 145 ------PLLISGEA-SKDVARYPVAAKVAE 167 (711)
Q Consensus 145 ------PLiiSg~~-~~~~~~y~~~~~i~~ 167 (711)
-.+++|.+ .++-.-|+++..||+
T Consensus 846 ~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 846 SIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred HHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 25677754 333345666655543
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=40.26 E-value=1.2e+02 Score=34.99 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=49.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEEC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTN 98 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT 98 (711)
+.-=.+|.|||..+.-.+...+-.|.+|..++..+-.. ++..-.+.||+... ++.+..
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~-----qi~~ra~rlg~~~~-----------------~l~~~~ 141 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS-----QIKLRAERLGLPSD-----------------NLYLLA 141 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH-----HHHHHHHHcCCChh-----------------cEEEeC
Confidence 44557999999766655554445688888888754332 22222344554311 022222
Q ss_pred CCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 99 NSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 99 ~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
... ++.|...+. .. +..++|||++..+..+
T Consensus 142 e~~--l~~i~~~i~-------~~---~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 142 ETN--LEAILATIE-------EE---KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCC--HHHHHHHHH-------hh---CCCEEEEechhhhccc
Confidence 222 344444331 12 5679999999888643
No 361
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=40.25 E-value=97 Score=37.83 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=42.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
++.+.=|-|||-+..+.+...+. .|..|.+..++..-|+--.+.+..+++.+|
T Consensus 191 V~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 191 AATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred EEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 88999999999765544332333 688888899999999988999999998776
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=40.12 E-value=31 Score=41.54 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.8
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
++.++||||||.|
T Consensus 119 ~~KV~IIDEah~L 131 (647)
T PRK07994 119 RFKVYLIDEVHML 131 (647)
T ss_pred CCEEEEEechHhC
Confidence 6889999999987
No 363
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.00 E-value=52 Score=29.78 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCcEEEEecchhhH-HHHHHHHHHCCCCe
Q 005155 343 RQEVESMFRLGRPVLVGSTSVENS-EYLSDLLKQQGIPH 380 (711)
Q Consensus 343 i~ei~~~~~~grPVLV~t~Si~~S-E~Ls~~L~~~gi~~ 380 (711)
.+-+....+.|.|+.+.|++-..+ +.+++.|++.|++.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 455555667899999999998777 88999999999974
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=40.00 E-value=71 Score=32.45 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~Nd 53 (711)
++.=.+|+|||+-+.=-++-.+.. |.+|..||..+
T Consensus 23 li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred EEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 677789999998766555546677 99999888744
No 365
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.82 E-value=2.2e+02 Score=31.92 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=65.8
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchh
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELG 103 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elg 103 (711)
-|.|||-+.+=.|+..--.|+.|.+...--.=| =-.|+++---+.+|+.|..-..+ +.|..+.
T Consensus 148 NG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-aAiEQL~~w~er~gv~vI~~~~G----------------~DpAaVa 210 (340)
T COG0552 148 NGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-AAIEQLEVWGERLGVPVISGKEG----------------ADPAAVA 210 (340)
T ss_pred CCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-HHHHHHHHHHHHhCCeEEccCCC----------------CCcHHHH
Confidence 699999877666665667899998887654433 23456666667788887643223 2344455
Q ss_pred hHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHccc
Q 005155 104 FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQ 171 (711)
Q Consensus 104 fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~ 171 (711)
||=+.. -..| +++++|+|=|=++ ....++...+.++.+-+.+
T Consensus 211 fDAi~~--------Akar---~~DvvliDTAGRL---------------hnk~nLM~EL~KI~rV~~k 252 (340)
T COG0552 211 FDAIQA--------AKAR---GIDVVLIDTAGRL---------------HNKKNLMDELKKIVRVIKK 252 (340)
T ss_pred HHHHHH--------HHHc---CCCEEEEeCcccc---------------cCchhHHHHHHHHHHHhcc
Confidence 665432 1234 7888888765554 3444566666777666654
No 366
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=39.78 E-value=45 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=14.0
Q ss_pred CccEEEeechhhhhhh
Q 005155 125 PFHFAIVDEVDSVLID 140 (711)
Q Consensus 125 ~~~~aIVDEvDs~LiD 140 (711)
+..++||||||.|-.|
T Consensus 109 ~~kviiidead~mt~~ 124 (325)
T COG0470 109 GYKVVIIDEADKLTED 124 (325)
T ss_pred CceEEEeCcHHHHhHH
Confidence 7899999999999654
No 367
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=39.54 E-value=41 Score=35.90 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.2
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+.+++||||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5679999999986
No 368
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=38.93 E-value=59 Score=34.87 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=45.3
Q ss_pred CCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 328 PIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 328 ~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
-|.+|.+..+=|++| +.+.+..+.|-.+.++++++++++.+...|++.|+-
T Consensus 164 vDav~LDmp~PW~~l-e~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 164 VDAVFLDLPDPWNVL-EHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred cCEEEEcCCChHHHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 489999999999974 677777789999999999999999999999999863
No 369
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=38.66 E-value=1.3e+02 Score=31.42 Aligned_cols=112 Identities=20% Similarity=0.252 Sum_probs=61.2
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRG-MIPEERR 87 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLtv~~i~~~-~~~~~r~ 87 (711)
..|. +.=..||.|||..+.=.++-.|+. |..|..++. .+.++.|-. ....|++...+..+ +++++..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~l------a~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLL------ARLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHH------HHHHTSTHHHHHCCGCHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH------HHhhcchhhhhhccccCHHHHH
Confidence 3455 677889999998666656534454 466777664 244444432 23345544433333 4444332
Q ss_pred hc-------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 ~a-------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.. ....+.+.....+.++-|++.+..-... .. +++++|||=.+-|
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~---~~~~v~IDyl~ll 142 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GK---KVDVVFIDYLQLL 142 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--ST---TEEEEEEEEGGGS
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--cc---CCCEEEechHHHh
Confidence 21 2344554444567778887765432111 13 7889999987754
No 370
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.30 E-value=35 Score=39.93 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.8
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
++.+.||||||.|
T Consensus 119 ~~kV~iIDE~~~l 131 (509)
T PRK14958 119 RFKVYLIDEVHML 131 (509)
T ss_pred CcEEEEEEChHhc
Confidence 6889999999987
No 371
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=38.00 E-value=17 Score=38.18 Aligned_cols=46 Identities=35% Similarity=0.539 Sum_probs=41.0
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhccC
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFSF 606 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~~ 606 (711)
...+|..-|=.||.|+ |||| ||=+||+....|..+||=+++++-|.
T Consensus 150 ~GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~Ifa~~l~aelvsIAg~ 197 (228)
T PRK03511 150 AGAELIADGNIHVYGM-----------MRGRALAGASGDRECQIFCTHLMAELVSIAGQ 197 (228)
T ss_pred CCCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEEcCE
Confidence 3578999999999999 6777 69999999999999999999998773
No 372
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=37.84 E-value=74 Score=31.48 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=44.9
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEe
Q 005155 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLN 384 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLn 384 (711)
+.+...+...++..+.+..++|..|+|.|.+.+.++.|-+.|=. .-+||....
T Consensus 8 hL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~ 64 (154)
T PRK06646 8 QTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL 64 (154)
T ss_pred EeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 34667788899999999999999999999999999999999855 358988643
No 373
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=37.80 E-value=40 Score=33.57 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=24.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQR 58 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~R 58 (711)
.+|+|||..+-..+......|.+|.++...+|.--+
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 589999875554444334568889999888776533
No 374
>PRK01973 septum formation inhibitor; Reviewed
Probab=37.70 E-value=18 Score=39.01 Aligned_cols=46 Identities=33% Similarity=0.548 Sum_probs=40.3
Q ss_pred ccchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 549 ~~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
..+.+|..-|=.||.|+ |||| ||-+||.....|..+||=+++++-|
T Consensus 189 ~~GAEviA~GnI~V~G~-----------lrGra~AG~~Gd~~A~If~~~l~aelvsIAg 236 (271)
T PRK01973 189 SYGAEVIAEGNIHIYAP-----------LRGRALAGVHGNHDARIFCTCLEPELISIAG 236 (271)
T ss_pred CCCCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCCcEEEECc
Confidence 34578899999999998 5665 7999999999999999999999876
No 375
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.88 E-value=36 Score=36.29 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=25.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
+.--+=|+|||.+++..|...|..|++|.++=.
T Consensus 62 V~S~kgGvGKStva~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 62 VTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 455567999999888888778888977777643
No 376
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=36.84 E-value=98 Score=28.84 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHH
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDL 372 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~ 372 (711)
.++.-+-+||.++.||-.... . ..+...+..+.+. ....|||++|.|=..|-.|..+
T Consensus 49 ~~~~a~~~Gl~y~~iPv~~~~----------~-~~~~v~~f~~~l~---~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVDGGA----------I-TEEDVEAFADALE---SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHCT-EEEE----TTT-------------HHHHHHHHHHHH---TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeecCCCC----------C-CHHHHHHHHHHHH---hCCCCEEEECCCChhHHHHHHH
Confidence 355667899999999864321 1 1233334333333 3456999999999988777654
No 377
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.77 E-value=34 Score=35.41 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
++.-..|.|||+.+.--++-.+..|.+|..||. ++-+.+-.+.|.
T Consensus 25 lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~ 69 (237)
T TIGR03877 25 LLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMA 69 (237)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHH
Confidence 667789999998776666645567999999986 444444444444
No 378
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=36.03 E-value=77 Score=32.20 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+..-.+|.|||..+.--++-.+..|..|..+|...
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44557899999765544543446799999988865
No 379
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.95 E-value=1.1e+02 Score=34.94 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 28 KTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 28 KTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+.+..++..+.....|+.+.|.++|..-+++-++ .+...|++++...++|++++|.... ..+|+++|.
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~----~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~ 284 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTA----SLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHH----HHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 4444444433234567888999998876665554 4456799999999999999888654 358999996
No 380
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.95 E-value=39 Score=37.35 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyL 55 (711)
|=|-|||-+++-.|+..|-.|++|++|++-...
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 469999865555555578888889999876543
No 381
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.91 E-value=53 Score=31.10 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=24.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.-.+=|+|||.++.--+...+..|+.|.++--+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~ 38 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL 38 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3447899999765555554577898888887553
No 382
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.87 E-value=1.1e+02 Score=36.31 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=44.6
Q ss_pred HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 38 l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+....++.+.|+|.+...|++-++.+ ...|+.+.++.++|+..+|.... ..+|+++|.
T Consensus 252 l~~~~~~k~LVF~nt~~~ae~l~~~L----~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 252 LSRSEGARTMVFVNTKAFVERVARTL----ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred HhcccCCcEEEEeCCHHHHHHHHHHH----HHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 34456889999999988777655544 45689999999999988887653 358898885
No 383
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=35.81 E-value=74 Score=32.31 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
.|. +..-.+|.|||..+.--++-.+..|.+|..++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455 556689999987655444323457888888876
No 384
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=35.75 E-value=1.9e+02 Score=33.61 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=25.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+..=.+|.|||..+.--++-.+..|..|..++.-
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4455799999987666665556789999999764
No 385
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=35.62 E-value=51 Score=35.85 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=39.1
Q ss_pred cccccCCcccH-HHHHHHHcCCCeE-----------EeCCCCCccc----ccC-------CCeEEeChhHHHHHHHHHHH
Q 005155 291 LSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIR----VDL-------PIQSFATARGKWEYARQEVE 347 (711)
Q Consensus 291 l~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~~p~~R----~d~-------~d~i~~t~~~K~~aIi~ei~ 347 (711)
++|.||+.+|. +.++.+.++..++ .|=|++|..- ..+ |...| +..+......+.|.
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~-~v~~f~~~a~~~i~ 82 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESY-SAADFQTLALNAIA 82 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheE-cHHHHHHHHHHHHH
Confidence 68999999985 5667777775544 3456666531 111 12222 11222233445555
Q ss_pred HhhhcCC-cEEEEec
Q 005155 348 SMFRLGR-PVLVGST 361 (711)
Q Consensus 348 ~~~~~gr-PVLV~t~ 361 (711)
+.++.|+ |||||=+
T Consensus 83 ~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 83 DITARGKIPLLVGGT 97 (287)
T ss_pred HHHhCCCCEEEEcCc
Confidence 6566665 8888754
No 386
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=35.60 E-value=33 Score=41.50 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=57.7
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 21 EMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
-+.-|-||+.+..|.++-..-.|. .+.|-.|+.+ .+.-+|+|. ..|.+.-+-++--.-||++.||
T Consensus 281 tA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspe-------NlkTlFeFv-------~kGfDaL~Yqeh~Dy~iI~s~n 346 (1011)
T KOG2036|consen 281 TASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPE-------NLKTLFEFV-------FKGFDALEYQEHVDYDIIQSTN 346 (1011)
T ss_pred EecCCCCchhhhhHHHHHHHhcCcceEEEcCCChH-------HHHHHHHHH-------HcchhhhcchhhcchhhhhhcC
Confidence 456799999998888873333565 4666667664 566666654 1122221222233457999999
Q ss_pred CchhhHHHHHhhhc---------ch-hhhhcCCCCCccEEEeechhhh
Q 005155 100 SELGFDYLRDNLAA---------NS-EQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 100 ~elgfDyLrD~l~~---------~~-~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.+|---..|=|+-. +| +..++. ..+.++||||-.|
T Consensus 347 p~fkkaivRInifr~hrQtIQYi~P~D~~kl~---q~eLlVIDEAAAI 391 (1011)
T KOG2036|consen 347 PDFKKAIVRINIFREHRQTIQYISPHDHQKLG---QAELLVIDEAAAI 391 (1011)
T ss_pred hhhhhhEEEEEEeccccceeEeeccchhhhcc---CCcEEEechhhcC
Confidence 98742222222221 11 223444 5678899998765
No 387
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.22 E-value=70 Score=37.46 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.3
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.+
T Consensus 116 ~~kVVIIDEad~l 128 (504)
T PRK14963 116 GRKVYILDEAHMM 128 (504)
T ss_pred CCeEEEEECcccc
Confidence 6789999999976
No 388
>PRK05636 replicative DNA helicase; Provisional
Probab=35.04 E-value=2.4e+02 Score=33.15 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=59.7
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEERR 87 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT---~NdyLA~RDae~~~~~y~~LGLtv~~i-~~~~~~~~r~ 87 (711)
..|. |.-..||.|||..++-.+.-.|+ .|++|.+++ +.+.|+.|-.... -+++...+ .+.++.++..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~------s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE------AEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh------cCCCHHHHhcCCCCHHHHH
Confidence 4465 56788999999755544433344 478888874 3445555543222 22222222 2345544432
Q ss_pred h-------ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 88 S-------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 88 ~-------aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
. .....+.+-....+..+.++.....- .... +++++|||=..-
T Consensus 337 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~---~~~~---~~~lvvIDYLql 386 (505)
T PRK05636 337 KLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRL---KQKH---DLKLIVVDYLQL 386 (505)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHh
Confidence 2 12345555555566677777654321 1123 688999997764
No 389
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.96 E-value=47 Score=39.64 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=11.9
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
...++||||||.|
T Consensus 118 ~~KVvIIDEah~L 130 (584)
T PRK14952 118 RYRIFIVDEAHMV 130 (584)
T ss_pred CceEEEEECCCcC
Confidence 6889999999987
No 390
>PHA02542 41 41 helicase; Provisional
Probab=34.92 E-value=59 Score=37.73 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe---cCHHHHHHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT---VNDYLAQRD 59 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT---~NdyLA~RD 59 (711)
..|. |.-..+|.|||..++--|.-.|-.|++|.+++ +.+.|+.|-
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 3454 56688999999866655543456788888876 444555543
No 391
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=34.89 E-value=94 Score=30.48 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=42.9
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCC--CeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC--CCcCCccee
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNARPKYAAREAETVA-QAGRKYAITISTN--MAGRGTDII 420 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi--~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn--mAGRGTDIk 420 (711)
.+-.+||+|+|-+..+.+.+.++..+. ...++..+ ....+..+-. +. ..+.|.+|+. -..=|+|++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~--~~~~~~~l~~~~~-~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQG--SKSRDELLEEFKR-GEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEEST--CCHHHHHHHHHCC-SSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecC--cchHHHHHHHHHh-ccCeEEEEEecccEEEeecCC
Confidence 446799999999999999999887642 22344332 2233333333 34 4789999998 788999998
No 392
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=34.87 E-value=41 Score=37.49 Aligned_cols=58 Identities=31% Similarity=0.237 Sum_probs=36.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHH----HcCC----CEEEEecCHHHHHHHH-HHHHHHhhhcCCeEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA----LTGE----GVHVVTVNDYLAQRDA-EWMERVHRFLGLSVGL 76 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A----L~G~----~VhVvT~NdyLA~RDa-e~~~~~y~~LGLtv~~ 76 (711)
|.--..|.|||+.++-..+..| |.|. +--|+.+|-+|-+-|. +.+.+++..+||+.+-
T Consensus 93 ~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 93 ILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred EEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 4556789999976554444332 3552 2234444555555554 4589999999999763
No 393
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=34.62 E-value=2.5e+02 Score=32.93 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 005155 31 VSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (711)
Q Consensus 31 va~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~------~DI~YgT~ 99 (711)
..+|-.++.-.....+.|.+.+...+.+ +...+...|++++.++|++++++|...+. .+|.++|-
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~----l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEE----LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHH----HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 3334333343444569999999887775 66778889999999999999999887653 57888873
No 394
>PRK09183 transposase/IS protein; Provisional
Probab=34.60 E-value=50 Score=35.01 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=25.3
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
..|. +.-=.+|.|||..+...+......|..|..++.++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 3444 344479999996544444434457888888775543
No 395
>PRK06526 transposase; Provisional
Probab=34.49 E-value=29 Score=36.86 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=23.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
+.-=.+|.|||-.+.-.+.-.+-.|+.|..+|.++-
T Consensus 102 ll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 102 VFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 566689999996544333323447888888777643
No 396
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.35 E-value=1.2e+02 Score=28.22 Aligned_cols=108 Identities=12% Similarity=0.188 Sum_probs=61.1
Q ss_pred cccccCCcccHH-HHHHHHcCCCeEE--eCCCCCcccccC---------CCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 291 LSGMTGTAKTEE-KEFLKMFQMPVIE--VPTNLPNIRVDL---------PIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 291 l~GmTGTa~te~-~Ef~~iY~l~vv~--IPt~~p~~R~d~---------~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
+.|.||-.|..- +.+.+..++.++- .+...+..-+|. +..++. .+.++++. -=|+|
T Consensus 5 i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~----~l~~~~~~--------~DVvI 72 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTD----DLEELLEE--------ADVVI 72 (124)
T ss_dssp EETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-----HHHHTTH---------SEEE
T ss_pred EECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccch----hHHHhccc--------CCEEE
Confidence 567888888754 5566667777542 233322222221 222221 22222222 23888
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCC
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnm 412 (711)
=+++.+.+....+.+.++|++.-+=+.+ ....+.+.+.++.+.-.|.+|.||
T Consensus 73 DfT~p~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 73 DFTNPDAVYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp EES-HHHHHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred EcCChHHhHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCCC
Confidence 8889998888888888888887664443 344444555666667899999998
No 397
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.20 E-value=63 Score=39.25 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.4
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 118 k~KV~IIDEVh~L 130 (702)
T PRK14960 118 RFKVYLIDEVHML 130 (702)
T ss_pred CcEEEEEechHhc
Confidence 5789999999975
No 398
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=34.20 E-value=1.1e+02 Score=30.04 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCeEEECCC----chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHH
Q 005155 91 RCDITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVA 166 (711)
Q Consensus 91 ~~DI~YgT~~----elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~ 166 (711)
..|+.+..+. .++.|-+|+-...-....... +.+++||||||.|-. ...+.+.
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~---~~KviiI~~ad~l~~--------------------~a~NaLL 123 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG---KYKVIIIDEADKLTE--------------------EAQNALL 123 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS---SSEEEEEETGGGS-H--------------------HHHHHHH
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHhcC---CceEEEeehHhhhhH--------------------HHHHHHH
Confidence 3577776665 467787774332211111222 688999999999842 3567788
Q ss_pred HHcccC
Q 005155 167 ELLVQG 172 (711)
Q Consensus 167 ~~l~~~ 172 (711)
+.|++.
T Consensus 124 K~LEep 129 (162)
T PF13177_consen 124 KTLEEP 129 (162)
T ss_dssp HHHHST
T ss_pred HHhcCC
Confidence 888764
No 399
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=34.07 E-value=91 Score=40.32 Aligned_cols=55 Identities=29% Similarity=0.374 Sum_probs=39.6
Q ss_pred hCCC-eEEecCCCcHHHHHHHHHHHHHHcC-------------CCEEEEecCH----HHHHHHHHHHHHHhhhc
Q 005155 15 HDGS-IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (711)
Q Consensus 15 ~~G~-IaEm~TGEGKTLva~Lpa~l~AL~G-------------~~VhVvT~Nd----yLA~RDae~~~~~y~~L 70 (711)
++|. ++|+-=|+|||-+.+.. ||.-|.| ..+.|||-|+ +|-.|..+.+..++..+
T Consensus 16 L~G~~LIEASAGTGKTyTIa~l-yLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~rL~~~~~~~ 88 (1181)
T PRK10876 16 LQGERLIEASAGTGKTFTIAAL-YLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNIHELRIAC 88 (1181)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH-HHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 99999999999654432 3444443 2688999875 88899988887776655
No 400
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=33.73 E-value=1e+02 Score=26.58 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.8
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
..++||+++|.+-..|...+..|+..|+...+|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG 84 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGG 84 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCC
Confidence 567899999999888999999999999976777775
No 401
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=33.63 E-value=1.8e+02 Score=32.34 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=54.2
Q ss_pred CchhHHHHHHH-Hh--CC----C-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHH-HHHHHHhhhcCCe
Q 005155 3 HFDVQIIGGAV-LH--DG----S-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFLGLS 73 (711)
Q Consensus 3 p~dvQl~g~~~-L~--~G----~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDa-e~~~~~y~~LGLt 73 (711)
-+|+|.++=+. +. .| . |+=+ |-+|+-|+-=-+.+.+..|-.|.+++|-.|.-..+. +..+.+++..|.+
T Consensus 134 ~HPtQaLaDl~Ti~e~~g~l~g~~va~v--Gd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~ 211 (331)
T PRK02102 134 WHPTQMLADFMTMKEHFGPLKGLKLAYV--GDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAK 211 (331)
T ss_pred CChHHHHHHHHHHHHHhCCCCCCEEEEE--CCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCe
Confidence 47999888763 32 24 2 5544 777654322222234567899999999888654332 3345566777877
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
+.+. .+ + ....-+|||+|...
T Consensus 212 ~~~~-~d--~--~ea~~~aDvvyt~~ 232 (331)
T PRK02102 212 ITIT-ED--P--EEAVKGADVIYTDV 232 (331)
T ss_pred EEEE-cC--H--HHHhCCCCEEEEcC
Confidence 5532 22 2 22345899999963
No 402
>PRK00030 minC septum formation inhibitor; Provisional
Probab=33.47 E-value=22 Score=38.74 Aligned_cols=45 Identities=38% Similarity=0.651 Sum_probs=39.8
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
.+.+|..-|=.||.|+ |||| ||-+||.....|..+|+=+|+++-|
T Consensus 212 ~GAEViAdGnIhVyG~-----------LrGra~AG~~Gd~~A~If~~~l~aelvsIAg 258 (292)
T PRK00030 212 QGAEVIADGNVHVYGP-----------LRGKAMAGARGDTSARIFTTQLDAELLAVAG 258 (292)
T ss_pred CCCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCceEEEEcc
Confidence 3568889999999998 6676 7999999999999999999999876
No 403
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.36 E-value=65 Score=39.31 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=19.7
Q ss_pred chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 101 elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+.|-+|+-+..-....... +..++||||||.|
T Consensus 98 ~~gVd~IRelle~a~~~P~~g---k~KVIIIDEad~L 131 (709)
T PRK08691 98 NTGIDNIREVLENAQYAPTAG---KYKVYIIDEVHML 131 (709)
T ss_pred cCCHHHHHHHHHHHHhhhhhC---CcEEEEEECcccc
Confidence 345566666543211111233 5789999999975
No 404
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=33.33 E-value=56 Score=39.16 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=22.4
Q ss_pred CeEEECCC-chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 93 DITYTNNS-ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 93 DI~YgT~~-elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+....++ ..+.|-+|+-...-....... +..++||||||.|
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~---~~KVIIIDEad~L 131 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTF---KYKVYIIDEAHML 131 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhC---CcEEEEEechHhC
Confidence 44444432 356666665432111111222 4578999999986
No 405
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=33.30 E-value=1.4e+02 Score=33.48 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 39 NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 39 ~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
......++.|.+++..-+++-++. +...|+++..+.++|+.++|.... .++|+++|+
T Consensus 251 ~~~~~~~~lVF~~t~~~~~~l~~~----L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 251 EEEWPDRAIIFANTKHRCEEIWGH----LAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred HhcCCCeEEEEECCHHHHHHHHHH----HHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 334567899999998776654444 455699999999999988887543 358999995
No 406
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=32.87 E-value=98 Score=34.68 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=15.7
Q ss_pred eEEecCCCcHHH-HHHHHHHHHH
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNA 40 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~A 40 (711)
+..-..|.||+. +..++-++++
T Consensus 45 Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 45 LIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhC
Confidence 778889999975 5566665543
No 407
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=32.79 E-value=59 Score=38.34 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=25.2
Q ss_pred chhHHHHHHHH-----hCCC-eEEecCCCcHHHH--HHHHHHHHHHc
Q 005155 4 FDVQIIGGAVL-----HDGS-IAEMKTGEGKTLV--STLAAYLNALT 42 (711)
Q Consensus 4 ~dvQl~g~~~L-----~~G~-IaEm~TGEGKTLv--a~Lpa~l~AL~ 42 (711)
||-|..=..-+ .+|+ +.||.+|.|||.+ ++..+|-....
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 56676554433 2577 9999999999964 44555543333
No 408
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=32.61 E-value=72 Score=26.76 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
..+.+|+|+|.+-..|..++..|++.|.+ +.+|+++
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG 90 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGG 90 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCC
Confidence 57789999999999999999999999998 6677775
No 409
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=32.61 E-value=60 Score=40.42 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=19.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+.-=.||.|||..+-..+- .|.|..-.+++.|
T Consensus 600 lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~d 631 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAE--LLYGGEQNLITIN 631 (852)
T ss_pred EEECCCCCCHHHHHHHHHH--HHhCCCcceEEEe
Confidence 3444799999987654443 3655544444443
No 410
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=32.59 E-value=23 Score=36.81 Aligned_cols=45 Identities=40% Similarity=0.606 Sum_probs=40.2
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
-..+|..-|=.||.|+ |||| ||=.||+....|-++||=+++++-|
T Consensus 142 ~GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~~elv~Iag 188 (221)
T PRK04804 142 NGAEVIADGSIHIYGT-----------LRGRAIAGASGDKEAVIICHSLEAELVSIAG 188 (221)
T ss_pred CCCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEECC
Confidence 3568999999999998 6676 6999999999999999999999876
No 411
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=32.57 E-value=1.4e+02 Score=35.95 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=36.9
Q ss_pred eEEecCCCcHH--HHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH-HHhhhcCCe
Q 005155 19 IAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME-RVHRFLGLS 73 (711)
Q Consensus 19 IaEm~TGEGKT--Lva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~-~~y~~LGLt 73 (711)
+.-+.==-||| ++..+.+++....|-.|..+..=..-+.--.+++. .+.+|+|=.
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~ 263 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK 263 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc
Confidence 56666778999 45666665555778777777776766666666653 445677654
No 412
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=32.51 E-value=68 Score=33.24 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 24 TGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
-|+|||. ++-..+.+|..+ .+-|| .||-+.+.|++.+..- .|..+.-+..
T Consensus 22 ~GSGKTa--Lie~~~~~L~~~~~~aVI-~~Di~t~~Da~~l~~~---~g~~i~~v~T 72 (202)
T COG0378 22 PGSGKTA--LIEKTLRALKDEYKIAVI-TGDIYTKEDADRLRKL---PGEPIIGVET 72 (202)
T ss_pred CCcCHHH--HHHHHHHHHHhhCCeEEE-eceeechhhHHHHHhC---CCCeeEEecc
Confidence 5999994 344445677655 45544 5789999999886654 6766654443
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=32.47 E-value=1.8e+02 Score=33.77 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=30.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
++.=.+|.|||..++--++-.|-.|.+|..++. ++=..+-...|
T Consensus 267 li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~ 310 (484)
T TIGR02655 267 LATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNA 310 (484)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHH
Confidence 666789999999877777755567888888775 33333333333
No 414
>PRK11519 tyrosine kinase; Provisional
Probab=32.33 E-value=43 Score=40.74 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=26.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.-..-|||||.+++-.|...|..|+.|.+|-.+
T Consensus 532 ts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 532 TGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred ECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 344669999998777777788999999999653
No 415
>PRK07667 uridine kinase; Provisional
Probab=32.19 E-value=57 Score=32.69 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=27.3
Q ss_pred EecCCCcHHH-HHHHHHHHHHHcCCCEEEEecCHHHHHHH
Q 005155 21 EMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYLAQRD 59 (711)
Q Consensus 21 Em~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~NdyLA~RD 59 (711)
.=..|+|||- +-.|...+ .-.|.+|.++..-+|+..+.
T Consensus 23 ~G~~gsGKStla~~L~~~l-~~~~~~~~~i~~Dd~~~~~~ 61 (193)
T PRK07667 23 DGLSRSGKTTFVANLKENM-KQEGIPFHIFHIDDYIVERN 61 (193)
T ss_pred ECCCCCCHHHHHHHHHHHH-HhCCCcEEEEEcCcccchhh
Confidence 3468999985 55555554 34788999999999876543
No 416
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=31.79 E-value=26 Score=33.01 Aligned_cols=19 Identities=47% Similarity=0.774 Sum_probs=17.0
Q ss_pred hHHHHhhcccccCCCCCcc
Q 005155 572 RIDNQLRGRAGRQGDPGST 590 (711)
Q Consensus 572 RiD~QLrGRaGRQGDpGss 590 (711)
-.|||+|.|+|++|.|||-
T Consensus 57 ~lE~~lR~~aG~~~y~~gF 75 (112)
T PF10861_consen 57 DLENWLRRRAGEAGYPGGF 75 (112)
T ss_pred HHHHHHHHHcCCCCCCCCH
Confidence 3899999999999999974
No 417
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=31.76 E-value=99 Score=29.81 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=54.7
Q ss_pred cccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHH
Q 005155 291 LSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS 370 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls 370 (711)
|.|-||..|+.+-+..+-+.-++ ..+-.+....++.+.+++.+. +|-.|...+.+..+.+.
T Consensus 3 ILGsTGSIG~qtLdVi~~~~d~f---------------~v~~Lsa~~n~~~L~~q~~~f----~p~~v~i~~~~~~~~l~ 63 (129)
T PF02670_consen 3 ILGSTGSIGTQTLDVIRKHPDKF---------------EVVALSAGSNIEKLAEQAREF----KPKYVVIADEEAYEELK 63 (129)
T ss_dssp EESTTSHHHHHHHHHHHHCTTTE---------------EEEEEEESSTHHHHHHHHHHH----T-SEEEESSHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHhCCCce---------------EEEEEEcCCCHHHHHHHHHHh----CCCEEEEcCHHHHHHHH
Confidence 68999999998876666552111 122233445566677777654 58889999999999999
Q ss_pred HHHHHCCCCeEEEeC
Q 005155 371 DLLKQQGIPHNVLNA 385 (711)
Q Consensus 371 ~~L~~~gi~~~vLnA 385 (711)
..|...+....++.+
T Consensus 64 ~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 64 KALPSKGPGIEVLSG 78 (129)
T ss_dssp HHHHHTTSSSEEEES
T ss_pred HHhhhcCCCCEEEeC
Confidence 999888888999887
No 418
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=31.66 E-value=85 Score=27.98 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=40.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
|.-|.-|.|=-...+ +..+.-.++.|||.-..||..|+..-..+++-+++.+.-+..+|+
T Consensus 5 iiD~PPGTgD~~l~~----~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 5 IIDLPPGTGDEHLTL----MQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp EEE--SCSSSHHHHH----HHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred EEeCCCCCCcHHHHH----HHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 455666777654332 244556689999999999999999999999999999988888885
No 419
>CHL00095 clpC Clp protease ATP binding subunit
Probab=31.63 E-value=41 Score=41.62 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=17.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
+.-=.||.|||..+-..| ..|.|....++
T Consensus 543 lf~Gp~GvGKt~lA~~LA--~~l~~~~~~~~ 571 (821)
T CHL00095 543 LFSGPTGVGKTELTKALA--SYFFGSEDAMI 571 (821)
T ss_pred EEECCCCCcHHHHHHHHH--HHhcCCccceE
Confidence 344479999997655554 34666544443
No 420
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=31.58 E-value=37 Score=41.74 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=47.3
Q ss_pred ccccccCCcccHHHHHHHHcCCCeEEeCCCCCccccc---CCCeEEe---ChhHHHHHHHHHHHHhhhcCC--cEEEEec
Q 005155 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVD---LPIQSFA---TARGKWEYARQEVESMFRLGR--PVLVGST 361 (711)
Q Consensus 290 kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d---~~d~i~~---t~~~K~~aIi~ei~~~~~~gr--PVLV~t~ 361 (711)
||.-||+|+.-+- |- -|-..+.||| |.+..| .|..|+- |..+......+-+...|++=- .||||.+
T Consensus 416 KLIIMSATLRVsD--Ft--enk~LFpi~p--PlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 416 KLIIMSATLRVSD--FT--ENKRLFPIPP--PLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred eEEEEeeeEEecc--cc--cCceecCCCC--ceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 5667888886321 10 1223344444 333322 4444432 344444444455556665432 4999999
Q ss_pred chhhHHHHHHHHHHC
Q 005155 362 SVENSEYLSDLLKQQ 376 (711)
Q Consensus 362 Si~~SE~Ls~~L~~~ 376 (711)
--.++++|.+.|++.
T Consensus 490 GQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKR 504 (1172)
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999999986
No 421
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.57 E-value=1.3e+02 Score=36.99 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCC
Q 005155 340 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 412 (711)
Q Consensus 340 ~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnm 412 (711)
+..++.|.+..++|+.|||..+.|...-.+.+.|+.+ |.+..++|++....++..+-.+ ..| ...|.|-|.-
T Consensus 232 EvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRS 305 (730)
T COG1198 232 EVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EARVVIGTRS 305 (730)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-CceEEEEech
Confidence 3445666666789999999999999999998888775 7888899998666666655443 556 5677776654
No 422
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=31.46 E-value=73 Score=41.00 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.7
Q ss_pred hCCCeEEecCCCcHHHHHHHHHHHHHHcCC------CEEEEecCH----HHHHHHHHHHHHHhhh
Q 005155 15 HDGSIAEMKTGEGKTLVSTLAAYLNALTGE------GVHVVTVND----YLAQRDAEWMERVHRF 69 (711)
Q Consensus 15 ~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~------~VhVvT~Nd----yLA~RDae~~~~~y~~ 69 (711)
....++++..|+|||-|.+.-.+ ..|.+. ...|||.|. +|..|..+.+......
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~l-rlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~ 79 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVL-RLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQE 79 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHH-HHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHHHHhc
Confidence 33459999999999987666554 555443 477999886 7777877777766553
No 423
>PRK08939 primosomal protein DnaI; Reviewed
Probab=31.27 E-value=60 Score=35.43 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=24.9
Q ss_pred CCeEEecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHH
Q 005155 17 GSIAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYL 55 (711)
Q Consensus 17 G~IaEm~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyL 55 (711)
|-+.-=.+|.|||-. .+++-. .+-.|..|-+++..+.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~-l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANE-LAKKGVSSTLLHFPEFI 196 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEEHHHHH
Confidence 345666899999954 434333 34568888888886443
No 424
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=31.05 E-value=3.8e+02 Score=27.89 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=54.6
Q ss_pred HHHhCCCeEEecCCCcHH-HHHHHHHHHHHHcCCCEEEEecCHHH--------------------HHHHHHHHHHHhhhc
Q 005155 12 AVLHDGSIAEMKTGEGKT-LVSTLAAYLNALTGEGVHVVTVNDYL--------------------AQRDAEWMERVHRFL 70 (711)
Q Consensus 12 ~~L~~G~IaEm~TGEGKT-Lva~Lpa~l~AL~G~~VhVvT~NdyL--------------------A~RDae~~~~~y~~L 70 (711)
+.-++|+|.- ||-||| +++=--|.-.+-.|.++++|-|.+-+ -.+..-..-|..+-+
T Consensus 35 i~~~~gkv~V--~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~ 112 (202)
T COG0794 35 ILECKGKVFV--TGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRL 112 (202)
T ss_pred HHhcCCcEEE--EcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHc
Confidence 3345799876 899999 34332232346689889888866443 123334566777888
Q ss_pred CCeEEEEcCCCCHHHHHhccCCCeEEECCCc
Q 005155 71 GLSVGLIQRGMIPEERRSNYRCDITYTNNSE 101 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r~~aY~~DI~YgT~~e 101 (711)
|.++..+++.-++ ..+-.+||+...+..
T Consensus 113 g~~liaiT~~~~S---sLak~aDvvl~ip~~ 140 (202)
T COG0794 113 GAKLIAITSNPDS---SLAKAADVVLVIPVK 140 (202)
T ss_pred CCcEEEEeCCCCC---hHHHhcCeEEEccCc
Confidence 8888888766332 134567888777764
No 425
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=1e+02 Score=34.81 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=42.1
Q ss_pred CeEEecCCCcHHHHHHHHHHHHHH-----cCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 18 SIAEMKTGEGKTLVSTLAAYLNAL-----TGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~Lpa~l~AL-----~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
.|+||.-|.| ||+.-|..+++.| ..-.+++|-+|++|++|..+.++.+-
T Consensus 80 ~lvEiGaG~G-~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRG-TLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcC-hHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3999999999 7777777777777 47799999999999999999887664
No 426
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=31.04 E-value=1.5e+02 Score=36.88 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=42.7
Q ss_pred HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc----CCCeEEECC
Q 005155 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY----RCDITYTNN 99 (711)
Q Consensus 41 L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY----~~DI~YgT~ 99 (711)
..|++|.|.|.|.. +++++...+...|+++.++.+++..+++.... ...|+++|+
T Consensus 426 ~~~~pvLIf~~t~~----~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 426 ETGRPVLIGTGSIE----QSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred hcCCCEEEEeCcHH----HHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 47999999999964 45677777777899999999988766665332 348999996
No 427
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.81 E-value=95 Score=36.89 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.4
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 119 ~~KVvIIdev~~L 131 (576)
T PRK14965 119 RYKIFIIDEVHML 131 (576)
T ss_pred CceEEEEEChhhC
Confidence 6789999999976
No 428
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=30.67 E-value=58 Score=33.08 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=23.9
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHH-HcCCCEEEEecCHHH
Q 005155 16 DGS-IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDYL 55 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~Lpa~l~A-L~G~~VhVvT~NdyL 55 (711)
..| .+--.||+|||-++...+.-.. -.|.+|.|+=||-+-
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcc
Confidence 344 3445799999976555554222 355567777666543
No 429
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.51 E-value=46 Score=40.54 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.-..-|||||.+++-.|...|..|++|.+|=.+
T Consensus 537 tS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 537 TGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 334559999987666666678999999988654
No 430
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=30.48 E-value=28 Score=36.01 Aligned_cols=45 Identities=42% Similarity=0.677 Sum_probs=40.3
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
...+|..-|=.||.|+ |||| ||=+||+....|-.+||=+++++-|
T Consensus 140 ~GAeViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~ae~v~Iag 186 (217)
T TIGR01222 140 AGAEVLADGNIHVYGK-----------LRGRALAGANGDTSAVIFALDLQAELISIAG 186 (217)
T ss_pred CCCEEEeCCCEEEEEE-----------eccEEEcCCCCCCCcEEEeccCCccEEEECC
Confidence 4578999999999998 6777 6999999999999999999999866
No 431
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=30.46 E-value=1.3e+02 Score=31.88 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=25.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
++.=.+|.|||..++--++-.|..|.+|..++.-
T Consensus 40 lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 40 NITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5566799999987766665456788888888864
No 432
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=30.36 E-value=1.6e+02 Score=36.98 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=43.9
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC----CCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR----CDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~----~DI~YgT~ 99 (711)
.|++|.|.|.|.. +++++..++...|+++.++.+.++..++..... ..|+++||
T Consensus 448 ~GrpVLV~t~sv~----~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATn 505 (908)
T PRK13107 448 RGQPVLVGTVSIE----QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATN 505 (908)
T ss_pred cCCCEEEEeCcHH----HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecC
Confidence 7999999999987 566788888889999999988888777665432 25999997
No 433
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.35 E-value=53 Score=38.56 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.5
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 119 ~~kVvIIDEad~l 131 (527)
T PRK14969 119 RFKVYIIDEVHML 131 (527)
T ss_pred CceEEEEcCcccC
Confidence 5789999999976
No 434
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=30.21 E-value=1.5e+02 Score=33.42 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=42.7
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..+.|.+.+..-|.+-++.+. ..|+++..+.++|+.++|..+. ..+|+++|.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLR----KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHH----hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 45689999999887776666554 4799999999999998887654 358898885
No 435
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=30.17 E-value=45 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.5
Q ss_pred CcceEEeCCeEEEEeCCCCccc
Q 005155 227 DVQYIVRNGKALIINELTGRVE 248 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~ 248 (711)
+-.|++.||+++|||..|.|+.
T Consensus 40 ~Y~Y~~v~~~~ViVdP~Tr~VV 61 (65)
T PF06823_consen 40 GYRYVVVNDRIVIVDPRTRRVV 61 (65)
T ss_pred CceEEEECCEEEEEcCCCCEEE
Confidence 5579999999999999998875
No 436
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=29.85 E-value=2.4e+02 Score=30.47 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=29.0
Q ss_pred chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccC
Q 005155 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (711)
Q Consensus 101 elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~ 172 (711)
..+.|-+|+-...-....... +..++|||++|.|= + ..++.+.+.|+++
T Consensus 72 ~i~v~~ir~~~~~~~~~p~~~---~~kv~iI~~ad~m~-~-------------------~a~naLLK~LEep 120 (313)
T PRK05564 72 SIGVDDIRNIIEEVNKKPYEG---DKKVIIIYNSEKMT-E-------------------QAQNAFLKTIEEP 120 (313)
T ss_pred CCCHHHHHHHHHHHhcCcccC---CceEEEEechhhcC-H-------------------HHHHHHHHHhcCC
Confidence 345566666443110112233 67899999999982 2 2466777888754
No 437
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=29.82 E-value=1.3e+02 Score=35.78 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 005155 37 YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (711)
Q Consensus 37 ~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~~ 100 (711)
++....|+.+.|.|.+..-++ ++...+...|++++...++|++++|.... ..+|+++|+.
T Consensus 230 ~l~~~~~~~~IIFc~tr~~~e----~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 230 YVQEQRGKSGIIYCNSRAKVE----DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred HHHhcCCCCEEEEECcHHHHH----HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 344557788999999876554 55555566799999999999998887654 2589999973
No 438
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=29.81 E-value=2.9e+02 Score=31.88 Aligned_cols=35 Identities=20% Similarity=0.085 Sum_probs=24.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.-=.+|.|||..+.-.++-.+-.|.+|..++.-+
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 44556999999877666664556677888887643
No 439
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=29.72 E-value=66 Score=34.04 Aligned_cols=38 Identities=34% Similarity=0.314 Sum_probs=29.3
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEe--cCHHHHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVT--VNDYLAQ 57 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT--~NdyLA~ 57 (711)
+.-|=|.|||-++++.+-..|-.|.+|.++= ||.-|++
T Consensus 7 ~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 7 ASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 4456799999887777766788999999984 6777763
No 440
>PRK06835 DNA replication protein DnaC; Validated
Probab=29.68 E-value=62 Score=35.76 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=22.2
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
+.-=.||.|||.. .+++-.+ .-.|+.|..+|..+.
T Consensus 187 ll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~~~l 222 (329)
T PRK06835 187 LFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTADEL 222 (329)
T ss_pred EEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEHHHH
Confidence 5666899999953 3333321 225788888877553
No 441
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.50 E-value=55 Score=34.96 Aligned_cols=44 Identities=30% Similarity=0.285 Sum_probs=29.4
Q ss_pred cCCCcHHHHHHH-HHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTL-AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~L-pa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+=|.|||.++++ +..+.+=.|+.|.+|-.- .=-.+...||+..-
T Consensus 8 KGG~GKTtiaalll~~l~~~~~~~VLvVDaD---------pd~nL~~~LGve~~ 52 (255)
T COG3640 8 KGGVGKTTIAALLLKRLLSKGGYNVLVVDAD---------PDSNLPEALGVEEP 52 (255)
T ss_pred CCCccHHHHHHHHHHHHHhcCCceEEEEeCC---------CCCChHHhcCCCCC
Confidence 569999987776 665555556888888542 22246677887753
No 442
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=29.25 E-value=2.8e+02 Score=24.58 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=38.6
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECCC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNNS 100 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~------~DI~YgT~~ 100 (711)
.+.++.|.+++..-+.+-++ .+...+..+..+.+++++.+|..... ..|+.+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~ 87 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAE----LLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV 87 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHH----HHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh
Confidence 47889999999665554444 44446889999999998777764432 357777753
No 443
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.20 E-value=2.7e+02 Score=30.91 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHHhccCCCeEEECCCchh
Q 005155 44 EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERRSNYRCDITYTNNSELG 103 (711)
Q Consensus 44 ~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~-~~~~~~~r~~aY~~DI~YgT~~elg 103 (711)
+.|.|+..+...- .|.+++..+++.+|+.|..+. ++.+.++-+.+-.|..+.....+.+
T Consensus 145 ~~VNiiG~~~~~~-~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 145 RSVNIIGGSPLGP-GDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp SEEEEEEESTBTH-HHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred CceEEecCcCCCc-ccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 5799997764332 899999999999999998887 7788888888889999888888854
No 444
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.18 E-value=51 Score=40.08 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+-|||||.+++-.|+..|..|+.|.+|-.+
T Consensus 551 vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 551 TQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred eecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5667889999987777777678899999999664
No 445
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=29.16 E-value=2.1e+02 Score=31.82 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=53.8
Q ss_pred CchhHHHHHHH-H--hC------C-CeEEecCCCcHH--HHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHH-HHHHhhh
Q 005155 3 HFDVQIIGGAV-L--HD------G-SIAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW-MERVHRF 69 (711)
Q Consensus 3 p~dvQl~g~~~-L--~~------G-~IaEm~TGEGKT--Lva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~-~~~~y~~ 69 (711)
-+|+|.++=+. + +. | +|+=+ |-+|. .-..+.+ .+..|-.+.+++|..|+-..+.-+ ...+.+.
T Consensus 133 ~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~v--GD~~~~v~~Sl~~~--~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 208 (336)
T PRK03515 133 FHPTQLLADLLTMQEHLPGKAFNEMTLAYA--GDARNNMGNSLLEA--AALTGLDLRLVAPKACWPEAALVTECRALAQK 208 (336)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCCCEEEEe--CCCcCcHHHHHHHH--HHHcCCEEEEECCchhcCcHHHHHHHHHHHHH
Confidence 47999988763 2 12 2 25555 55554 3333333 355699999999999876654432 3455666
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
-|.++.+. .+ + ....-++||+|.+.
T Consensus 209 ~g~~i~~~-~d--~--~ea~~~aDvvytd~ 233 (336)
T PRK03515 209 NGGNITLT-ED--I--AEGVKGADFIYTDV 233 (336)
T ss_pred cCCeEEEE-cC--H--HHHhCCCCEEEecC
Confidence 67776532 22 2 22345899999983
No 446
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.97 E-value=1.9e+02 Score=25.35 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCcEEEEec------chhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 353 GRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 353 grPVLV~t~------Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
.-||+||+. ..--|..+-+.|.+.|++...++-. ++.+-..++.+..|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~-~~~~~~~~l~~~~g~~t 63 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL-EDEEVRQGLKEYSNWPT 63 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC-CCHHHHHHHHHHhCCCC
Confidence 459999987 4557888999999999999999864 23333345666666543
No 447
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=1.6e+02 Score=32.73 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=60.1
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC------ccccccCCcccH-HHHHHHHcCCCeEEeC
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP------KLSGMTGTAKTE-EKEFLKMFQMPVIEVP 317 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~------kl~GmTGTa~te-~~Ef~~iY~l~vv~IP 317 (711)
.|+-+|+| ||--|=|| ||-| +--|-|..||.--. .|+|=-||.++- ++-...--|-.++.|-
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAV--------ILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAV--------ILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhe--------eecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 57899998 88776665 4543 23466777775322 588999999872 3333333343444444
Q ss_pred CCCCcccccCCCeEEeChhHHHH----HHHHHHHHhhhcCCcEEEEecch
Q 005155 318 TNLPNIRVDLPIQSFATARGKWE----YARQEVESMFRLGRPVLVGSTSV 363 (711)
Q Consensus 318 t~~p~~R~d~~d~i~~t~~~K~~----aIi~ei~~~~~~grPVLV~t~Si 363 (711)
+ .+.-.||- .++..+-++.+...|-+||..-|
T Consensus 199 S--------------SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 199 S--------------SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred h--------------HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 3 22345663 57788888888889999986544
No 448
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.78 E-value=1.8e+02 Score=29.43 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcC------CCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~Lpa~l~AL~G------~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|.+.++ ..|+|||..+.-.++..++.+ .+|..++..+-. +.+.+..+.+.+|.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~---~~~rl~~~~~~~~~ 79 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTF---RPERLVQIAERFGL 79 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCc---CHHHHHHHHHHhcc
Confidence 4665544 699999987766665333332 577777765532 23344444555554
No 449
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=28.44 E-value=78 Score=35.97 Aligned_cols=89 Identities=18% Similarity=0.068 Sum_probs=49.1
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecc------hhhHHHHHHHHHHCCCCeE
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS------VENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~S------i~~SE~Ls~~L~~~gi~~~ 381 (711)
.=|+.+++||+- ..+|.+.. ..+..++++++.. ...-.+++-|.| ..+.+.++++-++.||||-
T Consensus 120 ~AGl~~~vV~~~------~~~d~l~t-d~~~ie~~i~~~G---~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhl 189 (389)
T PF05889_consen 120 RAGLEPVVVENV------LEGDELIT-DLEAIEAKIEELG---ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHL 189 (389)
T ss_dssp HTT-EEEEE-EE------EETTEEEE-HHHHHHHHHHHHC---GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EE
T ss_pred hcCCeEEEeecc------CCCCeeec-cHHHHHHHHHHhC---CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceE
Confidence 348899999972 24565544 3444554443331 222234444444 2348899999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccE
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAI 406 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~V 406 (711)
+=||---|..+=-+.|.+|.+.|+|
T Consensus 190 vNnAYgvQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 190 VNNAYGVQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp EEGTTTTT-HHHHHHHHHHHHHSTC
T ss_pred EccchhhhHHHHHHHHHHHHhcCCc
Confidence 8888543444445666777666544
No 450
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.34 E-value=88 Score=36.31 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.6
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
...++||||+|.+
T Consensus 117 ~~kVvIIDE~h~L 129 (472)
T PRK14962 117 KYKVYIIDEVHML 129 (472)
T ss_pred CeEEEEEEChHHh
Confidence 5689999999987
No 451
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=28.29 E-value=1.5e+02 Score=33.20 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 005155 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (711)
Q Consensus 632 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~ 677 (711)
-..|...|......+-+..+.+++...--+.+++-+|..|+.|+.|
T Consensus 43 v~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G 88 (337)
T PTZ00007 43 LKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 3457888888888888888888888888889999999999999985
No 452
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=27.89 E-value=44 Score=41.33 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=34.9
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
|...-.|||+++- +.||.|......-+..+ +-.++|+||||.|. |-++
T Consensus 217 R~l~edAdIIF~P-----YnYLiDp~iR~~~~v~L----knsIVIfDEAHNiE-dic~ 264 (945)
T KOG1132|consen 217 RELKEDADIIFCP-----YNYLIDPKIRRSHKVDL----KNSIVIFDEAHNIE-DICR 264 (945)
T ss_pred hhhcccCcEEEec-----hhhhcCHhhhccccccc----cccEEEEeccccHH-HHHh
Confidence 6667789999987 67999986655433333 45799999999975 5443
No 453
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=27.87 E-value=1.6e+02 Score=34.85 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 005155 35 AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (711)
Q Consensus 35 pa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~~ 100 (711)
..++....|..+.|.+.+...+..-++.+ ...|++++...++|++++|.... ..+|+++|..
T Consensus 216 ~~~l~~~~~~~~IIf~~sr~~~e~la~~L----~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a 283 (591)
T TIGR01389 216 LDYLKKHRGQSGIIYASSRKKVEELAERL----ESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA 283 (591)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHH----HhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 34445556788899999887777655554 45799999999999998887653 3589999963
No 454
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=27.79 E-value=1.8e+02 Score=30.55 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 005155 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (711)
Q Consensus 633 ~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~ 677 (711)
..|...|.++...+-+..+...+...--+.+++-+|..|+.|+.+
T Consensus 5 ~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g 49 (244)
T PF00956_consen 5 EALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIING 49 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 357788888888888888888888888889999999999999987
No 455
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=27.79 E-value=92 Score=36.90 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.6
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 119 ~~kViIIDE~~~L 131 (559)
T PRK05563 119 KYKVYIIDEVHML 131 (559)
T ss_pred CeEEEEEECcccC
Confidence 6789999999977
No 456
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=27.60 E-value=88 Score=33.23 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=11.0
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
...+++|||+|.+
T Consensus 81 ~~~vl~iDEi~~l 93 (305)
T TIGR00635 81 EGDVLFIDEIHRL 93 (305)
T ss_pred cCCEEEEehHhhh
Confidence 4579999999987
No 457
>PHA02535 P terminase ATPase subunit; Provisional
Probab=27.53 E-value=2.7e+02 Score=33.44 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=38.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhh-cCC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRF-LGL 72 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~-LGL 72 (711)
++.-.==-|||-.|+.=|+..|| .|..+..+.+|...|.-=.+-+..+.+. +|+
T Consensus 157 ~ilKSRQiG~T~~fA~EA~~dal~~G~nqiflSas~~QA~~f~~yi~~~a~~~~~v 212 (581)
T PHA02535 157 NILKSRQIGATYYFAREALEDALLTGRNQIFLSASKAQAHVFKQYIIAFAREAADV 212 (581)
T ss_pred eEeeecccchHHHHHHHHHHHHHhcCCceEEECCCHHHHHHHHHHHHHHHHhhcCc
Confidence 55444557999999888887777 5889999999998887544444444332 443
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.44 E-value=55 Score=36.25 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCC-eEEecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCH
Q 005155 16 DGS-IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.|- ++-=.||+|||-+ |+|.-|+| .-+..||+|--|
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN--~~~~~HIlTIED 162 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYIN--KHKAKHILTIED 162 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHh--ccCCcceEEecC
Confidence 566 6777899999854 55555544 345789998643
No 459
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=27.37 E-value=90 Score=34.91 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=22.9
Q ss_pred hCCC-eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEecCH
Q 005155 15 HDGS-IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 15 ~~G~-IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
..|. ++-=.||+|||- .++|.-+++.-.+.+.+|+|..|
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Ed 173 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEA 173 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence 3455 455589999985 34444443333445567888644
No 460
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=27.35 E-value=81 Score=38.85 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=11.7
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++++||+|.+
T Consensus 557 p~sVlllDEieka 569 (758)
T PRK11034 557 PHAVLLLDEIEKA 569 (758)
T ss_pred CCcEEEeccHhhh
Confidence 6789999999997
No 461
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.22 E-value=52 Score=38.42 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=26.3
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+|- ++-=.||+|||.+ |=++++-|....+.|+|.-|
T Consensus 258 ~GliLvTGPTGSGKTTT--LY~~L~~ln~~~~nI~TiED 294 (500)
T COG2804 258 QGLILVTGPTGSGKTTT--LYAALSELNTPERNIITIED 294 (500)
T ss_pred CeEEEEeCCCCCCHHHH--HHHHHHHhcCCCceEEEeeC
Confidence 355 6777899999954 44455667788888999855
No 462
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=27.16 E-value=1.9e+02 Score=32.94 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=43.4
Q ss_pred HHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 37 YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 37 ~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+....+..+.|.|++..-+.+-++. +...|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 236 ll~~~~~~~~lVF~~t~~~~~~l~~~----L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd 300 (460)
T PRK11776 236 LLLHHQPESCVVFCNTKKECQEVADA----LNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD 300 (460)
T ss_pred HHHhcCCCceEEEECCHHHHHHHHHH----HHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 33445667899999997766655544 455699999999999988887653 247888885
No 463
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=27.15 E-value=1e+02 Score=27.75 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=30.4
Q ss_pred hcCCcEEEEecch--hhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSV--ENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si--~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
...+||+|.|.+- ..|...+..|...|++..+|+++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG 99 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGG 99 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCC
Confidence 5678999999975 47889999999999987778775
No 464
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.77 E-value=78 Score=34.24 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+-|.|||.+++-.++..+..|++|.+|=-+
T Consensus 98 v~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D 131 (322)
T TIGR03815 98 VIGGRGGAGASTLAAALALAAARHGLRTLLVDAD 131 (322)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5667899999986665555567788888887543
No 465
>PRK09165 replicative DNA helicase; Provisional
Probab=26.72 E-value=2.3e+02 Score=33.05 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=59.9
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH---------------cCCCEEEEec---CHHHHHHHHHHHHHHhhhcCCe
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------------TGEGVHVVTV---NDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------------~G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLt 73 (711)
+..|. |.-..||-|||..++--+.-.|. .|++|.+++. .+.|+.|-.. ...|++
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la------~~s~v~ 287 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS------EQSEIS 287 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH------HhcCCC
Confidence 34555 67788999999755443332233 2677887763 3344444211 222444
Q ss_pred EEEEc-CCCCHHHHHhc-------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQ-RGMIPEERRSN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~-~~~~~~~r~~a-------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...+. +.++.++.... ...++.+-....+..+.++..+..- .... +++++|||=..-|
T Consensus 288 ~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l---~~~~---~~~lvvIDyLqli 353 (497)
T PRK09165 288 SSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL---KRQH---GLDLLVVDYLQLI 353 (497)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 33222 23444332221 2335555556667777887766421 1123 6889999976643
No 466
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=26.61 E-value=1.1e+02 Score=31.49 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 25 GEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
=.|||+.-++-++-..+..+.+.|+|-.|-....+.+.+..+-+-||+++.++
T Consensus 132 STG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~v 184 (191)
T PF15609_consen 132 STGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGIPIDVV 184 (191)
T ss_pred cchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 35899999999987777888999999999999989899999999999988665
No 467
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=26.43 E-value=32 Score=33.92 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=21.7
Q ss_pred hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 88 SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 88 ~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
....++|+.+|.+-.....+ .. ... .++++|||||-.+.
T Consensus 167 ~l~~~~vi~~T~~~~~~~~~----~~-----~~~---~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 167 ILKEADVIFTTLSSAASPFL----SN-----FKE---KFDVVIVDEASQIT 205 (236)
T ss_dssp HHHT-SEEEEETCGGG-CCG----TT-------------SEEEETTGGGS-
T ss_pred hcccccccccccccchhhHh----hh-----hcc---cCCEEEEeCCCCcc
Confidence 34468999999876521111 10 111 68999999998764
No 468
>PRK13768 GTPase; Provisional
Probab=26.35 E-value=73 Score=33.57 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=21.6
Q ss_pred ecCCCcHHH-HHHHHHHHHHHcCCCEEEEecC
Q 005155 22 MKTGEGKTL-VSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 22 m~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~N 52 (711)
=..|.|||. +..+..+ .+..|+.|++|.-.
T Consensus 9 G~~G~GKTt~~~~~~~~-l~~~g~~v~~i~~D 39 (253)
T PRK13768 9 GTAGSGKTTLTKALSDW-LEEQGYDVAIVNLD 39 (253)
T ss_pred CCCCccHHHHHHHHHHH-HHhcCCceEEEECC
Confidence 348999986 4555554 46689999998744
No 469
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=26.23 E-value=35 Score=35.96 Aligned_cols=45 Identities=40% Similarity=0.660 Sum_probs=39.8
Q ss_pred cchhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 550 ~~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
...+|..-|=.||.|+ |||| ||=+||.....|-++||=+++++-|
T Consensus 161 ~GAEViA~GnI~VyG~-----------LRG~a~AG~~Gd~~A~I~a~~l~pelvsIag 207 (239)
T PRK05177 161 SGAEVVAGGSIHVYGA-----------LRGRAIAGAAGNPSARIFCRKLEAELLAIDG 207 (239)
T ss_pred CCCEEEeCCCEEEEEE-----------cceEEEeCCCCCCccEEEeccCCceEEEEee
Confidence 4568899999999998 6676 7999999999999999999999855
No 470
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=26.18 E-value=89 Score=29.35 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=27.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.+=|.|||..++-.|...|-.|++|.+|-.+.+ -..+..++|..
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~--------~~~~~~~~~~~ 51 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF--------SPSLSRLLGIE 51 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS--------S-HHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC--------CCCcccccccc
Confidence 356999997766666667889988888866532 23355555554
No 471
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.16 E-value=2.5e+02 Score=34.01 Aligned_cols=75 Identities=23% Similarity=0.155 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT 410 (711)
..|-.+..--+......|..+||.+++.+-++..++.+++ .|+++.+++++.+..+++..+.. ..| .-.|.|+|
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT 371 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGT 371 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEch
Confidence 3444433333333445788899999999999887666554 57999999997544344433322 345 45788988
Q ss_pred C
Q 005155 411 N 411 (711)
Q Consensus 411 n 411 (711)
.
T Consensus 372 ~ 372 (681)
T PRK10917 372 H 372 (681)
T ss_pred H
Confidence 5
No 472
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=26.15 E-value=4.1e+02 Score=23.02 Aligned_cols=56 Identities=23% Similarity=0.185 Sum_probs=35.7
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCC---CCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcC
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAREAETVAQAGRKYAITISTN 411 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~g---i~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATn 411 (711)
...++||+|++....+...+.+.... ++..+++.. ....+.. ...+....|.|+|.
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~i~i~t~ 87 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGG--TSIKQQE--KLLSGKTDIVVGTP 87 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecC--cchhHHH--HHhcCCCCEEEECc
Confidence 56799999999999988877776654 677777763 2111111 22233566667664
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.95 E-value=1.6e+02 Score=31.80 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=32.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.+|.|||..+...+....-.|+.|.+++...+=.. -.+++....+-+|+.+.
T Consensus 83 ~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~-~~~ql~~~~~~~~~~~~ 134 (270)
T PRK06731 83 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVI 134 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHHhhhcCceEE
Confidence 39999998766555433446788999988655211 23344555555665554
No 474
>PLN02229 alpha-galactosidase
Probab=25.90 E-value=3.7e+02 Score=31.07 Aligned_cols=117 Identities=11% Similarity=0.125 Sum_probs=69.0
Q ss_pred HHHHHHHhccCcceEEeCCeEEE--EeCCCCcccccc-ccChhhhHHHHh------HhCCccccCceeeeeeeehhHhhh
Q 005155 217 ALKAKEFYRRDVQYIVRNGKALI--INELTGRVEEKR-RWSEGIHQAVEA------KEGLKIQADSVVVAQITYQSLFKL 287 (711)
Q Consensus 217 AL~A~~l~~~d~dYiV~d~~Ivi--VD~~TGR~~~gr-~ws~GLHQaiEa------KEgv~I~~es~t~a~Is~q~~F~~ 287 (711)
++.+..+-.-+-+||+-|+.=.- -| ..|+++++. +|.+|+...... |-|+-..+...|++
T Consensus 88 ~~v~~Gl~~~Gy~yv~iDDgW~~~~rd-~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~---------- 156 (427)
T PLN02229 88 ALVSTGLADLGYIHVNIDDCWSNLKRD-SKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQ---------- 156 (427)
T ss_pred HHHHhHHHhCCCEEEEEcCCcCCCCcC-CCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccC----------
Confidence 44455565667899987752211 23 369999985 799998765443 34555566666664
Q ss_pred cCccccccCCcccHHHH--HHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEE-ec
Q 005155 288 YPKLSGMTGTAKTEEKE--FLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG-ST 361 (711)
Q Consensus 288 Y~kl~GmTGTa~te~~E--f~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~-t~ 361 (711)
|..|+.+-|+.. ...-.|+|++.+----. +. ....+.+.++-+.+. +.||||+.- |+
T Consensus 157 -----~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~-------~~--~~~~~~y~~m~~AL~---~tGRpI~~SlC~ 216 (427)
T PLN02229 157 -----VRPGSLFHEVDDADIFASWGVDYLKYDNCYN-------LG--IKPIERYPPMRDALN---ATGRSIFYSLCE 216 (427)
T ss_pred -----CCCCCccHHHHHHHHHHHcCCCEEEecCCCC-------CC--cchhHHHHHHHHHHH---hhCCCcEEEecC
Confidence 567888776533 33558999886532110 00 112344555544443 589997665 54
No 475
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=25.60 E-value=83 Score=25.95 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 357 LV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
|..+.+.-+++.+...|.+.||++.+.|.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 66788889999999999999999998775
No 476
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=25.51 E-value=3.4e+02 Score=29.67 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred CchhHHHHHHH-H--hCCC-----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHH-HHHHHHhhhcCCe
Q 005155 3 HFDVQIIGGAV-L--HDGS-----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFLGLS 73 (711)
Q Consensus 3 p~dvQl~g~~~-L--~~G~-----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDa-e~~~~~y~~LGLt 73 (711)
-+|+|.++=+. + +.|. |+=+ |-|+..+-.+... .+..|-.|.+++|-.++-..+. ++.+.+.+..|.+
T Consensus 126 ~HPtQaL~Dl~Ti~e~~g~l~g~kva~v--GD~~~v~~S~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~ 202 (302)
T PRK14805 126 YHPCQALADFLTLAEQFGDVSKVKLAYV--GDGNNVTHSLMYG-AAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGK 202 (302)
T ss_pred CChHHHHHHHHHHHHHhCCcCCcEEEEE--cCCCccHHHHHHH-HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCE
Confidence 47999888763 2 2343 5555 6666543333333 3455999999999887655433 2334566667877
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
+.+.. + . ...-+|||+|.+.
T Consensus 203 ~~~~~-d--~---~a~~~aDvvy~~~ 222 (302)
T PRK14805 203 LVLTS-D--I---EAIEGHDAIYTDT 222 (302)
T ss_pred EEEEc-C--H---HHHCCCCEEEeec
Confidence 65432 2 1 2356899999965
No 477
>PRK10436 hypothetical protein; Provisional
Probab=25.43 E-value=1e+02 Score=35.69 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=25.8
Q ss_pred hCCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 15 HDGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 15 ~~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.+|- +.--.||+|||-+. -+.+..+.....+|+|.-|
T Consensus 217 ~~GliLvtGpTGSGKTTtL--~a~l~~~~~~~~~i~TiED 254 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTL--YSALQTLNTAQINICSVED 254 (462)
T ss_pred cCCeEEEECCCCCChHHHH--HHHHHhhCCCCCEEEEecC
Confidence 4576 67889999999653 2334556666788999654
No 478
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=25.32 E-value=2e+02 Score=33.79 Aligned_cols=82 Identities=10% Similarity=0.106 Sum_probs=51.6
Q ss_pred EEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHHH
Q 005155 561 HVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQI 640 (711)
Q Consensus 561 ~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~ 640 (711)
.|+...-++.++-=-.+.||+||-|--|.+-.+|-=+..-| -+.++++.+.+- ++..... ..+...+.
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~F----------lr~LK~lpl~~~-e~~~~~~-~~v~~~~~ 468 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF----------LRYLKKLPLEEF-EFPPLKP-EDVQSQLE 468 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHH----------HHHHhhCCCccc-CCCCCCH-HHHHHHHH
Confidence 48888899999999999999999999999988775333211 223344444322 1222111 22455566
Q ss_pred HHHHhhHHHHHHHH
Q 005155 641 SAEKYYFGIRKSLV 654 (711)
Q Consensus 641 ~~E~~~~~~Rk~l~ 654 (711)
++...+|..++...
T Consensus 469 ~li~~~y~~~~aak 482 (543)
T KOG0342|consen 469 KLISKNYSLKEAAK 482 (543)
T ss_pred HHHHHHhhHHHHHH
Confidence 66667777655443
No 479
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=25.31 E-value=1.4e+02 Score=35.81 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=20.8
Q ss_pred CchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 100 SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 100 ~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+..+.|-+|+-+..-....+.. +..++||||||.|
T Consensus 110 s~~gvd~IReIie~~~~~P~~a---~~KVvIIDEad~L 144 (598)
T PRK09111 110 SHTGVDDIREIIESVRYRPVSA---RYKVYIIDEVHML 144 (598)
T ss_pred ccCCHHHHHHHHHHHHhchhcC---CcEEEEEEChHhC
Confidence 3456677665432111112333 6789999999987
No 480
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.25 E-value=68 Score=41.26 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhc--CCeEEEEcCCC-CHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhh--------hhcCCCCC
Q 005155 57 QRDAEWMERVHRFL--GLSVGLIQRGM-IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQ--------LVMRWPKP 125 (711)
Q Consensus 57 ~RDae~~~~~y~~L--GLtv~~i~~~~-~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~--------~v~r~~R~ 125 (711)
....+.|..+|..| |=+.-+...+. +| ...+-.|....|+.-- .- .+.|.++-.. -+++ -+|
T Consensus 1016 ~~In~~F~~if~~L~~GG~a~L~l~~~dd~----l~~Giei~a~ppgK~~-~~-l~~LSGGEKsLtAlAllFAi~~-~~P 1088 (1163)
T COG1196 1016 DKINENFSEIFKELFGGGTAELELTEPDDP----LTAGIEISARPPGKKL-QS-LSLLSGGEKSLTALALLFAIQK-YRP 1088 (1163)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEeCCCCch----hhcCcEEEEECCCCCc-cc-hhhcCCcHHHHHHHHHHHHHHh-hCC
Confidence 34456788888877 33555554442 22 1233355555555431 00 1122221100 0121 238
Q ss_pred ccEEEeechhhhhhhcCC
Q 005155 126 FHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 126 ~~~aIVDEvDs~LiDea~ 143 (711)
..|+|+||||.-| |.++
T Consensus 1089 aPf~vLDEVDAaL-D~~N 1105 (1163)
T COG1196 1089 APFYVLDEVDAAL-DDAN 1105 (1163)
T ss_pred CCeeeeccchhhc-cHHH
Confidence 8999999999997 7654
No 481
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=25.25 E-value=3.6e+02 Score=30.53 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=53.1
Q ss_pred hHhhhcC-ccccccCC-----cccH----HHHHHHHcCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHhh-
Q 005155 283 SLFKLYP-KLSGMTGT-----AKTE----EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMF- 350 (711)
Q Consensus 283 ~~F~~Y~-kl~GmTGT-----a~te----~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~-t~~~K~~aIi~ei~~~~- 350 (711)
+.++.|+ ++.++.+| .|.. .+++.+..+.+|+.++|. . |. +..+=+.++++.+....
T Consensus 78 ~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tp--g---------f~g~~~~G~~~~~~alv~~~~ 146 (407)
T TIGR01279 78 QIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPAS--G---------LDYTFTQGEDTVLAALVPFCP 146 (407)
T ss_pred HHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCC--C---------ccccHHHHHHHHHHHHHHhhc
Confidence 3445553 55554444 4442 356666678888888763 2 22 22222333333333221
Q ss_pred ---hc--CCcEEEEecchhhHHHHHHHHHHCCCCeE-EEe
Q 005155 351 ---RL--GRPVLVGSTSVENSEYLSDLLKQQGIPHN-VLN 384 (711)
Q Consensus 351 ---~~--grPVLV~t~Si~~SE~Ls~~L~~~gi~~~-vLn 384 (711)
.. +.=+|+|.-+......|.++|++.|++.. ++-
T Consensus 147 ~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lp 186 (407)
T TIGR01279 147 EAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLP 186 (407)
T ss_pred cccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeC
Confidence 11 22277788777778899999999999987 664
No 482
>PTZ00035 Rad51 protein; Provisional
Probab=24.91 E-value=1.6e+02 Score=32.58 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=47.6
Q ss_pred CCeEEe--cCCCcHHHHHHHHHHHHHH------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHh
Q 005155 17 GSIAEM--KTGEGKTLVSTLAAYLNAL------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRS 88 (711)
Q Consensus 17 G~IaEm--~TGEGKTLva~Lpa~l~AL------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~ 88 (711)
|.|.++ ..|.|||..+...++...+ .+..|..|.....+.. +.+..+.+.+|+.. +
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~---eri~~ia~~~g~~~---------~---- 181 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP---ERIVQIAERFGLDP---------E---- 181 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH---HHHHHHHHHhCCCh---------H----
Confidence 454444 6899999766555543333 2334533433322221 22444455555431 1
Q ss_pred ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 89 NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 89 aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
..-.+|.|...... +.+.+.+..-....... ++..+|||=+-+++
T Consensus 182 ~~l~nI~~~~~~~~--e~~~~~l~~~~~~l~~~---~~~lvVIDSital~ 226 (337)
T PTZ00035 182 DVLDNIAYARAYNH--EHQMQLLSQAAAKMAEE---RFALLIVDSATALF 226 (337)
T ss_pred hHhhceEEEccCCH--HHHHHHHHHHHHHhhcc---CccEEEEECcHHhh
Confidence 11123566554332 23333332111112223 68899999776654
No 483
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=24.90 E-value=2.9e+02 Score=33.19 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC
Q 005155 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (711)
Q Consensus 337 ~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn 411 (711)
.|-.+..--+......|..+||.+++.+-++...+.+++ .|+++.+++++.+..+++..+.. ..| .-.|.|+|.
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT~ 346 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLVVGTH 346 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEEEecH
Confidence 344333333334446788999999999999887766554 47999999987443333333322 344 337888885
No 484
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=24.76 E-value=4.8e+02 Score=28.57 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=21.2
Q ss_pred CccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccC
Q 005155 125 PFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (711)
Q Consensus 125 ~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~ 172 (711)
+..++|||+||.|- . ..++.+.+.|+++
T Consensus 124 ~~kVvII~~ae~m~-~-------------------~aaNaLLK~LEEP 151 (314)
T PRK07399 124 PRKVVVIEDAETMN-E-------------------AAANALLKTLEEP 151 (314)
T ss_pred CceEEEEEchhhcC-H-------------------HHHHHHHHHHhCC
Confidence 67899999999982 1 2567788888753
No 485
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=24.76 E-value=1.7e+02 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=30.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|.+.|++ ..+|.++
T Consensus 56 ~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG 92 (101)
T cd01528 56 NPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGG 92 (101)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCC
Confidence 35789999999988999999999999996 4567765
No 486
>PTZ00424 helicase 45; Provisional
Probab=24.67 E-value=2e+02 Score=31.63 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+..++..+...++.|.+++..-+.. +...+...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~----l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDY----LTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHH----HHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 3444456677789999988765544 4445556689999999999988887643 248999986
No 487
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=24.41 E-value=2.3e+02 Score=31.65 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=11.9
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 141 ~~rVviIDeAd~l 153 (351)
T PRK09112 141 NWRIVIIDPADDM 153 (351)
T ss_pred CceEEEEEchhhc
Confidence 6789999999998
No 488
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.37 E-value=4.8e+02 Score=31.54 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.6
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+.+++||||+|.|
T Consensus 127 ~~KVvIIdEad~L 139 (620)
T PRK14954 127 RYRVYIIDEVHML 139 (620)
T ss_pred CCEEEEEeChhhc
Confidence 5689999999997
No 489
>PRK04328 hypothetical protein; Provisional
Probab=24.31 E-value=1.7e+02 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+..=.+|.|||..+.--++-.+..|..|..+|..+
T Consensus 27 li~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 27 LLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 56678999999866655554567899998888644
No 490
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=24.03 E-value=2.5e+02 Score=32.08 Aligned_cols=55 Identities=16% Similarity=0.009 Sum_probs=41.1
Q ss_pred HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 41 L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
...+.+.|.|++..-|.+-++. +...|+++..+.++|+.++|.... ..+|+++|.
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~----L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd 303 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQ----LNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 3456899999997766655544 456799999999999988887653 347888884
No 491
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=24.03 E-value=1.4e+02 Score=26.04 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=30.1
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
..+.||+|.|.+-..|...+..|+..|++ ..+|+++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG 90 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG 90 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence 56789999999988899999999999984 5667764
No 492
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=24.03 E-value=58 Score=36.14 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=40.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
++-..||+|||..+++|..+.+ +..+.|+-|.-+|... .....+.+|-.|-++..
T Consensus 3 lv~g~tGsGKt~~~viP~ll~~--~~s~vv~D~Kge~~~~----t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 3 LVFAPTRSGKGVGFVIPNLLTW--PGSVVVLDPKGENFEL----TSEHRRALGRKVFVFDP 57 (384)
T ss_pred eEecCCCCCCccEEEccchhcC--CCCEEEEccchhHHHH----HHHHHHHcCCeEEEEcC
Confidence 4567899999999999987653 5678888888888753 33444556777776654
No 493
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=23.93 E-value=2.2e+02 Score=34.96 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHH-HHHHHHHHHcC--CCEEEEecCHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVS-TLAAYLNALTG--EGVHVVTVNDYLAQRDAEW 62 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva-~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~ 62 (711)
+-|..++-.+..++ +..=..|+|||-+. .+...+.++ | ..|.+++|+---|+|-.+.
T Consensus 326 ~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~ 387 (720)
T TIGR01448 326 EEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEV 387 (720)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHh
Confidence 45666666666555 67777899998643 333333333 5 7899999999988876554
No 494
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=23.92 E-value=4.2e+02 Score=25.07 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=34.4
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEec------chhhHHHHHHHHHHCCCCeE-EE-eCCCcchHhHH----HHHHhc
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGST------SVENSEYLSDLLKQQGIPHN-VL-NARPKYAAREA----ETVAQA 400 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~------Si~~SE~Ls~~L~~~gi~~~-vL-nA~~~~~~~Ea----~Iia~A 400 (711)
.....+...-++..++ ..-|.||+|. ...+++.+.+.|.++|+|.. ++ .....+..+++ .++.+.
T Consensus 20 ~~~~~R~~~a~~L~~~---g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~ 96 (155)
T PF02698_consen 20 PESRERLDEAARLYKA---GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKER 96 (155)
T ss_dssp -S-HHHHHHHHHHHH----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-
T ss_pred HhHHHHHHHHHHHHhc---CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhh
Confidence 3344455444444432 3346788887 67899999999999999844 32 22223444443 455555
Q ss_pred CCCccEEEEcC
Q 005155 401 GRKYAITISTN 411 (711)
Q Consensus 401 G~~G~VTIATn 411 (711)
|- ..|+|.|+
T Consensus 97 ~~-~~iilVT~ 106 (155)
T PF02698_consen 97 GW-QSIILVTS 106 (155)
T ss_dssp SS-S-EEEE--
T ss_pred cC-CeEEEECC
Confidence 54 46767664
No 495
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=23.74 E-value=75 Score=37.75 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=54.8
Q ss_pred cCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC----CCeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR----CDITYT 97 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~----~DI~Yg 97 (711)
.|.+|||--|+ .-| +-+.-.-+-|=+-||.-.++. +..+|+.|.+++|. ||+-.+. +..+=|
T Consensus 199 PTNSGKTy~AL-----qrl~~aksGvycGPLrLLA~EV~~r----~na~gipCdL~TGe----E~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 199 PTNSGKTYRAL-----QRLKSAKSGVYCGPLRLLAHEVYDR----LNALGIPCDLLTGE----ERRFVLDNGNPAQHVSC 265 (700)
T ss_pred CCCCchhHHHH-----HHHhhhccceecchHHHHHHHHHHH----hhhcCCCccccccc----eeeecCCCCCcccceEE
Confidence 59999995332 222 122333456778888744433 45789999888764 5555555 566666
Q ss_pred CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 98 T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
|.. |+ .++. .+++|||||+--| -|..|
T Consensus 266 TVE----------M~-----sv~~---~yeVAViDEIQmm-~Dp~R 292 (700)
T KOG0953|consen 266 TVE----------MV-----SVNT---PYEVAVIDEIQMM-RDPSR 292 (700)
T ss_pred EEE----------Ee-----ecCC---ceEEEEehhHHhh-cCccc
Confidence 652 11 1233 8999999999765 46543
No 496
>PF13245 AAA_19: Part of AAA domain
Probab=23.68 E-value=1.2e+02 Score=26.17 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhc----CCcEEEEecchhhHHHHHHHH
Q 005155 338 KWEYARQEVESMFRL----GRPVLVGSTSVENSEYLSDLL 373 (711)
Q Consensus 338 K~~aIi~ei~~~~~~----grPVLV~t~Si~~SE~Ls~~L 373 (711)
|-..+++.+...... +++|||.+.+-..++.|.+.|
T Consensus 23 KT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 23 KTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 433344444444433 899999999999999999998
No 497
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.60 E-value=1.1e+02 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=20.0
Q ss_pred chhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 101 elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+.|-+|+-+..-....... ...++||||+|.+
T Consensus 107 ~~~vd~Ir~iie~a~~~P~~~---~~KVvIIDEa~~L 140 (507)
T PRK06645 107 KTSVDDIRRIIESAEYKPLQG---KHKIFIIDEVHML 140 (507)
T ss_pred CCCHHHHHHHHHHHHhccccC---CcEEEEEEChhhc
Confidence 345666666443211112233 5789999999976
No 498
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=23.39 E-value=1.2e+02 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.4
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
++.||++.|.+-..|...+..|+..|++..+|.++
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG 89 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGG 89 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCc
Confidence 46899999999888999999999999985556664
No 499
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.36 E-value=1.2e+02 Score=36.69 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=11.7
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.|
T Consensus 119 ~~kVIIIDEad~L 131 (624)
T PRK14959 119 RYKVFIIDEAHML 131 (624)
T ss_pred CceEEEEEChHhC
Confidence 5789999999998
No 500
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.30 E-value=1.1e+02 Score=32.69 Aligned_cols=32 Identities=38% Similarity=0.365 Sum_probs=24.1
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~ 51 (711)
|.-++=|-|||- +|.|+.. .+..|+.|.+|=-
T Consensus 6 i~s~kGGvG~TTltAnLA~a-L~~~G~~VlaID~ 38 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWA-LARLGESVLAIDL 38 (243)
T ss_pred EecCCCCCCHHHHHHHHHHH-HHHCCCcEEEEeC
Confidence 455678999985 5666665 5779999999865
Done!