Query 005155
Match_columns 711
No_of_seqs 282 out of 1623
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipc_A Preprotein translocase 100.0 1E-184 5E-189 1594.3 53.5 639 1-706 78-805 (997)
2 3jux_A Protein translocase sub 100.0 5E-176 2E-180 1501.8 57.1 566 1-704 74-690 (822)
3 1nkt_A Preprotein translocase 100.0 2E-165 5E-170 1439.0 62.7 607 1-701 110-718 (922)
4 2fsf_A Preprotein translocase 100.0 1E-159 4E-164 1387.6 45.7 597 1-706 73-688 (853)
5 1tf5_A Preprotein translocase 100.0 8E-152 3E-156 1324.1 58.3 568 1-706 82-650 (844)
6 2db3_A ATP-dependent RNA helic 100.0 2E-28 6.7E-33 268.7 32.6 277 2-420 78-367 (434)
7 2j0s_A ATP-dependent RNA helic 100.0 2.5E-27 8.5E-32 254.2 27.6 273 2-420 59-343 (410)
8 2i4i_A ATP-dependent RNA helic 100.0 5.5E-27 1.9E-31 251.2 26.7 279 2-420 37-343 (417)
9 1s2m_A Putative ATP-dependent 100.0 2.5E-26 8.5E-31 245.3 31.1 273 2-420 43-325 (400)
10 1hv8_A Putative ATP-dependent 100.0 2.9E-26 1E-30 239.7 29.7 271 2-420 28-305 (367)
11 1xti_A Probable ATP-dependent 100.0 5.2E-26 1.8E-30 241.2 31.5 274 2-420 30-317 (391)
12 3pey_A ATP-dependent RNA helic 99.9 1.3E-25 4.5E-30 237.1 31.5 272 2-420 27-310 (395)
13 3eiq_A Eukaryotic initiation f 99.9 5.9E-26 2E-30 242.6 28.3 273 2-420 62-347 (414)
14 3i5x_A ATP-dependent RNA helic 99.9 2.8E-25 9.7E-30 249.5 35.1 284 2-420 94-409 (563)
15 2z0m_A 337AA long hypothetical 99.9 1.8E-25 6.2E-30 231.5 24.9 124 2-138 16-142 (337)
16 3sqw_A ATP-dependent RNA helic 99.9 8.2E-25 2.8E-29 248.1 31.5 284 2-420 43-358 (579)
17 3oiy_A Reverse gyrase helicase 99.9 3.1E-25 1.1E-29 239.7 26.2 124 2-138 21-152 (414)
18 3fht_A ATP-dependent RNA helic 99.9 2.2E-24 7.7E-29 229.8 29.2 274 2-420 47-333 (412)
19 2v1x_A ATP-dependent DNA helic 99.9 8.4E-25 2.9E-29 250.4 27.6 270 2-420 44-334 (591)
20 1oyw_A RECQ helicase, ATP-depe 99.9 1.5E-24 5.2E-29 244.4 26.7 266 2-420 25-303 (523)
21 1fuu_A Yeast initiation factor 99.9 4.4E-25 1.5E-29 233.9 15.8 126 2-138 43-175 (394)
22 1wp9_A ATP-dependent RNA helic 99.9 1.5E-23 5E-28 224.8 24.9 127 2-138 9-138 (494)
23 4a2p_A RIG-I, retinoic acid in 99.9 3.4E-23 1.2E-27 229.6 27.7 128 1-138 6-143 (556)
24 3fmp_B ATP-dependent RNA helic 99.9 1.6E-24 5.6E-29 238.9 12.2 277 2-420 114-400 (479)
25 3tbk_A RIG-I helicase domain; 99.9 1.6E-22 5.5E-27 223.4 27.8 129 1-138 3-140 (555)
26 3fho_A ATP-dependent RNA helic 99.9 1.7E-23 5.9E-28 234.3 18.1 272 2-420 141-424 (508)
27 4gl2_A Interferon-induced heli 99.9 4E-23 1.4E-27 237.5 18.2 128 1-137 6-148 (699)
28 4a2q_A RIG-I, retinoic acid in 99.9 2.1E-21 7.2E-26 228.5 29.4 127 2-138 248-384 (797)
29 1gm5_A RECG; helicase, replica 99.9 4.6E-22 1.6E-26 234.2 20.7 262 2-420 368-656 (780)
30 2eyq_A TRCF, transcription-rep 99.9 8.8E-21 3E-25 231.7 30.5 261 2-420 603-881 (1151)
31 2p6r_A Afuhel308 helicase; pro 99.9 2.3E-21 7.9E-26 224.8 22.1 125 2-138 25-151 (702)
32 2va8_A SSO2462, SKI2-type heli 99.9 1.3E-20 4.5E-25 218.5 27.7 125 2-138 30-158 (715)
33 4a2w_A RIG-I, retinoic acid in 99.9 6.2E-21 2.1E-25 228.7 25.6 128 2-138 248-384 (936)
34 2ykg_A Probable ATP-dependent 99.9 4.6E-21 1.6E-25 220.4 22.9 127 2-138 13-149 (696)
35 2oca_A DAR protein, ATP-depend 99.9 1.3E-21 4.5E-26 217.1 15.3 123 2-138 113-238 (510)
36 2zj8_A DNA helicase, putative 99.9 6.7E-21 2.3E-25 221.5 19.2 125 2-138 23-151 (720)
37 4a4z_A Antiviral helicase SKI2 99.9 1.3E-19 4.4E-24 218.6 30.0 125 2-144 39-165 (997)
38 3l9o_A ATP-dependent RNA helic 99.8 1.2E-19 4E-24 221.0 28.7 118 2-138 184-303 (1108)
39 1gku_B Reverse gyrase, TOP-RG; 99.8 1.1E-20 3.8E-25 229.0 19.3 120 3-138 58-188 (1054)
40 4ddu_A Reverse gyrase; topoiso 99.8 7E-20 2.4E-24 222.9 24.5 124 2-138 78-209 (1104)
41 2fwr_A DNA repair protein RAD2 99.8 3.3E-22 1.1E-26 219.9 1.6 110 2-138 93-205 (472)
42 2xgj_A ATP-dependent RNA helic 99.8 5.1E-19 1.7E-23 213.7 26.5 120 2-141 86-207 (1010)
43 2jlq_A Serine protease subunit 99.8 2.8E-20 9.5E-25 205.7 13.9 115 2-137 4-122 (451)
44 2z83_A Helicase/nucleoside tri 99.8 4.7E-19 1.6E-23 196.5 14.2 105 13-137 17-124 (459)
45 2whx_A Serine protease/ntpase/ 99.8 6.5E-20 2.2E-24 211.1 6.1 116 2-137 171-289 (618)
46 3o8b_A HCV NS3 protease/helica 99.7 4.2E-18 1.4E-22 197.0 13.1 99 14-136 229-329 (666)
47 3h1t_A Type I site-specific re 99.7 8.4E-17 2.9E-21 182.5 22.4 122 2-138 178-315 (590)
48 2v6i_A RNA helicase; membrane, 99.7 3.7E-17 1.3E-21 179.8 17.8 99 19-137 6-105 (431)
49 1yks_A Genome polyprotein [con 99.7 1.4E-17 4.7E-22 183.9 13.3 65 352-421 176-241 (440)
50 2xau_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.6E-22 197.2 13.1 119 2-136 93-219 (773)
51 4f92_B U5 small nuclear ribonu 99.7 1.5E-16 5.1E-21 200.6 22.0 125 3-137 80-219 (1724)
52 2wv9_A Flavivirin protease NS2 99.7 8.1E-18 2.8E-22 195.4 9.3 65 352-421 409-474 (673)
53 3dmq_A RNA polymerase-associat 99.7 3.4E-15 1.2E-19 179.8 32.0 86 333-420 485-573 (968)
54 1z63_A Helicase of the SNF2/RA 99.7 1.4E-15 4.7E-20 168.3 25.5 86 335-420 323-411 (500)
55 4f92_B U5 small nuclear ribonu 99.7 9.9E-16 3.4E-20 193.2 26.8 125 3-137 927-1058(1724)
56 3fe2_A Probable ATP-dependent 99.7 5.9E-16 2E-20 156.0 17.7 143 2-170 51-205 (242)
57 3ly5_A ATP-dependent RNA helic 99.7 1.3E-15 4.3E-20 156.4 17.2 144 2-170 76-230 (262)
58 3i32_A Heat resistant RNA depe 99.7 1.6E-16 5.6E-21 167.8 10.1 88 330-420 7-95 (300)
59 3rc3_A ATP-dependent RNA helic 99.6 1.3E-14 4.5E-19 168.6 24.5 67 354-421 321-390 (677)
60 2pl3_A Probable ATP-dependent 99.6 4.7E-15 1.6E-19 148.2 17.7 128 2-138 47-184 (236)
61 3eaq_A Heat resistant RNA depe 99.6 7.1E-16 2.4E-20 154.0 10.6 89 329-420 9-98 (212)
62 3iuy_A Probable ATP-dependent 99.6 9.7E-15 3.3E-19 145.2 16.2 142 2-170 42-196 (228)
63 3ber_A Probable ATP-dependent 99.6 1.9E-14 6.5E-19 146.5 16.8 144 2-170 65-215 (249)
64 1q0u_A Bstdead; DEAD protein, 99.6 1.2E-14 4.2E-19 143.8 14.7 142 2-170 26-179 (219)
65 3fmo_B ATP-dependent RNA helic 99.6 5.7E-15 1.9E-19 155.0 12.3 127 2-138 114-248 (300)
66 3bor_A Human initiation factor 99.6 1.4E-14 4.9E-19 145.7 14.7 126 2-138 52-186 (237)
67 1wrb_A DJVLGB; RNA helicase, D 99.6 1.6E-14 5.3E-19 146.2 14.7 127 2-138 45-187 (253)
68 3dkp_A Probable ATP-dependent 99.6 2.8E-15 9.7E-20 150.7 9.1 131 2-140 51-190 (245)
69 1vec_A ATP-dependent RNA helic 99.6 3.1E-14 1E-18 138.8 14.9 142 2-170 25-175 (206)
70 2oxc_A Probable ATP-dependent 99.6 1.7E-14 5.9E-19 144.2 13.4 126 2-138 46-179 (230)
71 3mwy_W Chromo domain-containin 99.5 8.6E-13 2.9E-17 155.8 26.3 85 336-420 555-642 (800)
72 1c4o_A DNA nucleotide excision 99.5 2.5E-12 8.4E-17 149.2 29.4 135 279-420 371-506 (664)
73 1z3i_X Similar to RAD54-like; 99.5 2.4E-12 8.3E-17 148.5 29.2 86 335-420 397-486 (644)
74 1qde_A EIF4A, translation init 99.5 8.6E-14 3E-18 137.5 14.7 126 2-138 36-168 (224)
75 1t6n_A Probable ATP-dependent 99.5 6E-14 2E-18 138.5 12.9 127 2-139 36-172 (220)
76 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 1.9E-13 6.6E-18 165.3 19.5 121 2-138 271-414 (1038)
77 2gxq_A Heat resistant RNA depe 99.5 2.4E-13 8.1E-18 132.3 15.4 124 2-138 23-157 (207)
78 1t5i_A C_terminal domain of A 99.4 2.1E-12 7E-17 124.7 14.4 87 331-420 11-98 (172)
79 3b6e_A Interferon-induced heli 99.4 3.9E-13 1.3E-17 130.9 8.5 133 1-138 32-175 (216)
80 2hjv_A ATP-dependent RNA helic 99.4 5.5E-12 1.9E-16 120.2 15.3 88 330-420 14-102 (163)
81 2jgn_A DBX, DDX3, ATP-dependen 99.3 4.2E-12 1.4E-16 124.2 12.2 89 330-420 24-113 (185)
82 2p6n_A ATP-dependent RNA helic 99.3 3E-12 1E-16 126.1 10.9 87 330-420 34-121 (191)
83 1fuk_A Eukaryotic initiation f 99.3 2E-11 6.9E-16 116.3 14.2 85 333-420 11-97 (165)
84 2rb4_A ATP-dependent RNA helic 99.3 2.3E-11 7.9E-16 117.0 13.3 83 335-420 18-101 (175)
85 2vl7_A XPD; helicase, unknown 99.3 1.3E-10 4.3E-15 131.6 19.2 130 2-143 7-191 (540)
86 1rif_A DAR protein, DNA helica 99.2 3.1E-11 1.1E-15 124.3 8.5 123 2-138 113-238 (282)
87 2d7d_A Uvrabc system protein B 99.2 7.4E-10 2.5E-14 128.5 20.2 135 279-420 377-512 (661)
88 3crv_A XPD/RAD3 related DNA he 99.1 1.9E-10 6.5E-15 130.3 11.3 130 1-144 2-190 (551)
89 2yjt_D ATP-dependent RNA helic 98.6 1.5E-11 5.2E-16 117.9 0.0 82 336-420 15-97 (170)
90 3llm_A ATP-dependent RNA helic 98.9 9E-10 3.1E-14 110.8 7.2 123 3-141 62-192 (235)
91 2fz4_A DNA repair protein RAD2 98.9 4.9E-09 1.7E-13 106.3 9.8 110 2-138 93-205 (237)
92 1z5z_A Helicase of the SNF2/RA 98.8 1.2E-08 4.2E-13 105.9 11.9 88 333-420 92-182 (271)
93 4a15_A XPD helicase, ATP-depen 97.9 2.1E-05 7.2E-10 90.6 9.9 78 2-79 3-87 (620)
94 1w36_D RECD, exodeoxyribonucle 97.2 0.00033 1.1E-08 80.4 7.1 70 4-74 151-227 (608)
95 1pjr_A PCRA; DNA repair, DNA r 96.3 0.22 7.6E-06 58.0 21.0 105 4-137 13-122 (724)
96 3lfu_A DNA helicase II; SF1 he 96.2 1.6 5.5E-05 49.3 27.1 104 5-137 12-120 (647)
97 1uaa_A REP helicase, protein ( 96.1 0.069 2.4E-06 61.5 15.6 109 1-137 1-114 (673)
98 2gk6_A Regulator of nonsense t 94.5 0.15 5.2E-06 58.5 11.3 60 5-64 183-245 (624)
99 4b3f_X DNA-binding protein smu 93.8 0.21 7.3E-06 57.3 10.6 59 5-63 192-253 (646)
100 2xzl_A ATP-dependent helicase 93.5 0.27 9.2E-06 58.3 11.1 61 5-65 363-426 (802)
101 2wjy_A Regulator of nonsense t 93.0 0.27 9.2E-06 58.3 9.9 60 5-64 359-421 (800)
102 1xx6_A Thymidine kinase; NESG, 92.1 0.17 6E-06 49.6 5.8 29 24-52 17-45 (191)
103 2o0j_A Terminase, DNA packagin 90.7 0.99 3.4E-05 49.1 10.5 70 2-71 163-236 (385)
104 3cpe_A Terminase, DNA packagin 90.7 0.83 2.8E-05 52.0 10.4 70 2-71 163-236 (592)
105 2orw_A Thymidine kinase; TMTK, 89.6 0.23 7.9E-06 48.0 4.0 30 23-52 11-40 (184)
106 3e1s_A Exodeoxyribonuclease V, 88.7 0.56 1.9E-05 53.4 6.9 60 4-63 191-252 (574)
107 1g5t_A COB(I)alamin adenosyltr 86.3 4.8 0.00016 39.8 11.1 36 16-51 28-64 (196)
108 1ls1_A Signal recognition part 86.3 2.6 8.8E-05 43.7 9.7 53 22-75 105-157 (295)
109 3kl4_A SRP54, signal recogniti 85.3 2.2 7.4E-05 47.1 8.9 54 22-76 104-157 (433)
110 3dm5_A SRP54, signal recogniti 85.1 2 6.8E-05 47.6 8.5 53 23-76 108-160 (443)
111 1vma_A Cell division protein F 84.5 1.8 6.1E-05 45.4 7.5 51 23-74 112-162 (306)
112 2d7d_A Uvrabc system protein B 84.4 1.6 5.5E-05 50.4 7.7 63 2-67 12-81 (661)
113 2b8t_A Thymidine kinase; deoxy 82.0 0.42 1.4E-05 48.1 1.4 30 24-53 21-50 (223)
114 3upu_A ATP-dependent DNA helic 81.5 5.5 0.00019 43.5 10.2 57 5-61 28-92 (459)
115 2j9r_A Thymidine kinase; TK1, 78.7 1.4 4.7E-05 44.3 3.8 47 25-75 38-84 (214)
116 3iqw_A Tail-anchored protein t 78.4 1.8 6.1E-05 46.0 4.8 34 19-52 20-53 (334)
117 1byi_A Dethiobiotin synthase; 78.3 2 7E-05 41.4 4.9 31 19-49 6-36 (224)
118 3e2i_A Thymidine kinase; Zn-bi 77.8 1.7 5.8E-05 43.8 4.2 53 20-76 30-85 (219)
119 3u4q_A ATP-dependent helicase/ 77.4 6.7 0.00023 48.5 10.2 121 3-138 11-140 (1232)
120 2ph1_A Nucleotide-binding prot 71.9 3.1 0.00011 41.6 4.5 35 19-53 23-57 (262)
121 2xxa_A Signal recognition part 71.6 12 0.00042 41.0 9.4 54 22-76 107-161 (433)
122 1g3q_A MIND ATPase, cell divis 71.5 3.4 0.00012 40.1 4.5 33 20-52 8-40 (237)
123 2ffh_A Protein (FFH); SRP54, s 70.5 10 0.00035 41.7 8.4 32 22-53 105-136 (425)
124 4dzz_A Plasmid partitioning pr 69.5 3.6 0.00012 38.8 4.1 32 21-52 8-39 (206)
125 3cio_A ETK, tyrosine-protein k 69.5 4.2 0.00014 42.1 4.9 34 19-52 109-142 (299)
126 3u61_B DNA polymerase accessor 69.4 3.5 0.00012 42.3 4.2 14 125-138 105-118 (324)
127 1hyq_A MIND, cell division inh 69.3 4.5 0.00016 40.0 4.9 33 19-51 7-39 (263)
128 3q9l_A Septum site-determining 69.1 4 0.00014 40.1 4.5 34 19-52 7-40 (260)
129 1j8m_F SRP54, signal recogniti 68.5 10 0.00034 39.4 7.5 33 22-54 105-137 (297)
130 1zu4_A FTSY; GTPase, signal re 68.4 13 0.00043 39.1 8.4 31 23-53 113-143 (320)
131 3zq6_A Putative arsenical pump 68.3 5.5 0.00019 41.5 5.6 35 19-53 18-52 (324)
132 2hjv_A ATP-dependent RNA helic 67.9 16 0.00056 33.6 8.2 63 33-99 25-93 (163)
133 3bfv_A CAPA1, CAPB2, membrane 67.9 4.2 0.00015 41.4 4.5 34 19-52 87-120 (271)
134 1t5i_A C_terminal domain of A 67.7 14 0.00049 34.5 7.8 62 34-99 22-89 (172)
135 2orv_A Thymidine kinase; TP4A 67.0 4.4 0.00015 41.2 4.3 53 17-75 19-74 (234)
136 1fuk_A Eukaryotic initiation f 66.9 16 0.00053 33.7 7.8 62 34-99 21-88 (165)
137 2kjq_A DNAA-related protein; s 66.0 3 0.0001 38.6 2.7 13 125-137 83-95 (149)
138 2lnd_A De novo designed protei 65.9 18 0.00061 31.1 7.1 61 342-402 40-104 (112)
139 2woo_A ATPase GET3; tail-ancho 65.9 5.5 0.00019 41.7 5.0 35 19-53 23-57 (329)
140 2rb4_A ATP-dependent RNA helic 65.7 11 0.00038 35.1 6.6 63 33-99 24-92 (175)
141 3dmn_A Putative DNA helicase; 65.4 32 0.0011 32.4 9.8 76 333-420 41-116 (174)
142 3ea0_A ATPase, para family; al 65.3 4.7 0.00016 39.2 4.1 35 19-53 9-44 (245)
143 1a5t_A Delta prime, HOLB; zinc 65.1 24 0.00082 36.6 9.7 13 125-137 108-120 (334)
144 3la6_A Tyrosine-protein kinase 64.4 5.6 0.00019 41.0 4.6 34 19-52 97-130 (286)
145 1wcv_1 SOJ, segregation protei 64.4 3.9 0.00013 40.7 3.3 33 21-53 13-45 (257)
146 2afh_E Nitrogenase iron protei 64.4 5.2 0.00018 40.5 4.3 30 22-51 9-38 (289)
147 3ug7_A Arsenical pump-driving 64.0 6.9 0.00024 41.3 5.3 35 19-53 30-64 (349)
148 3bos_A Putative DNA replicatio 63.7 8.1 0.00028 36.8 5.3 35 19-53 56-90 (242)
149 2xj4_A MIPZ; replication, cell 63.7 5.2 0.00018 40.7 4.1 34 20-53 10-43 (286)
150 3eaq_A Heat resistant RNA depe 63.3 22 0.00076 34.4 8.5 61 35-99 23-89 (212)
151 1cp2_A CP2, nitrogenase iron p 62.3 5.5 0.00019 39.5 4.0 30 22-51 8-37 (269)
152 2qby_A CDC6 homolog 1, cell di 62.2 18 0.00062 37.0 8.0 13 126-138 129-141 (386)
153 3end_A Light-independent proto 61.2 7.2 0.00025 39.8 4.7 33 19-52 46-78 (307)
154 2oze_A ORF delta'; para, walke 61.2 7.7 0.00026 39.2 4.9 32 22-53 44-75 (298)
155 2j37_W Signal recognition part 61.2 18 0.00061 40.6 8.2 52 22-75 108-160 (504)
156 3k9g_A PF-32 protein; ssgcid, 61.1 4.9 0.00017 40.0 3.4 35 19-54 32-66 (267)
157 3kjh_A CO dehydrogenase/acetyl 59.9 4.3 0.00015 39.3 2.6 31 23-53 8-38 (254)
158 3syl_A Protein CBBX; photosynt 59.6 5.9 0.0002 40.0 3.7 17 19-35 71-87 (309)
159 2v1u_A Cell division control p 59.5 6.7 0.00023 40.4 4.2 14 125-138 130-143 (387)
160 2qby_B CDC6 homolog 3, cell di 58.0 6.8 0.00023 40.6 3.9 11 128-138 136-146 (384)
161 3cwq_A Para family chromosome 57.8 8.7 0.0003 37.2 4.4 34 19-53 5-38 (209)
162 1ihu_A Arsenical pump-driving 57.3 10 0.00034 42.8 5.4 35 19-53 12-46 (589)
163 4a15_A XPD helicase, ATP-depen 57.2 36 0.0012 38.9 10.0 128 287-420 374-513 (620)
164 1d2n_A N-ethylmaleimide-sensit 56.4 8.1 0.00028 38.6 4.0 14 125-138 124-137 (272)
165 3hjh_A Transcription-repair-co 55.0 13 0.00043 41.5 5.6 56 352-419 381-436 (483)
166 2woj_A ATPase GET3; tail-ancho 54.9 11 0.00038 40.0 5.0 34 19-52 22-57 (354)
167 3i32_A Heat resistant RNA depe 54.4 36 0.0012 35.3 8.7 62 34-99 19-86 (300)
168 2z43_A DNA repair and recombin 52.5 38 0.0013 35.0 8.5 39 16-54 106-152 (324)
169 1fnn_A CDC6P, cell division co 52.1 21 0.00071 36.8 6.5 50 19-72 48-100 (389)
170 3vfd_A Spastin; ATPase, microt 50.9 18 0.00062 38.3 5.9 15 125-139 207-221 (389)
171 3te6_A Regulatory protein SIR3 50.5 11 0.00037 39.8 4.0 14 125-138 132-145 (318)
172 3kyp_A Pfnaps, nucleosome asse 49.3 32 0.0011 33.7 6.9 45 633-677 3-47 (193)
173 2r6a_A DNAB helicase, replicat 47.7 71 0.0024 34.7 10.1 112 14-138 200-326 (454)
174 3oiy_A Reverse gyrase helicase 47.3 54 0.0019 34.4 8.9 60 351-411 62-125 (414)
175 3fht_A ATP-dependent RNA helic 47.2 53 0.0018 33.8 8.7 66 30-99 253-324 (412)
176 2chg_A Replication factor C sm 47.0 12 0.00042 34.6 3.4 13 125-137 102-114 (226)
177 3g5j_A Putative ATP/GTP bindin 46.9 34 0.0012 29.9 6.1 36 351-386 86-123 (134)
178 3b9p_A CG5977-PA, isoform A; A 46.8 24 0.00082 35.3 5.8 58 23-138 62-126 (297)
179 1n0w_A DNA repair protein RAD5 45.7 36 0.0012 32.5 6.7 14 125-138 119-132 (243)
180 3crv_A XPD/RAD3 related DNA he 45.2 56 0.0019 36.4 9.0 129 284-421 310-457 (551)
181 1sxj_A Activator 1 95 kDa subu 44.9 37 0.0012 37.6 7.4 14 125-138 148-161 (516)
182 3io3_A DEHA2D07832P; chaperone 44.9 19 0.00065 38.3 4.8 34 19-52 22-57 (348)
183 2px0_A Flagellar biosynthesis 44.8 15 0.00052 37.9 4.0 32 23-54 113-145 (296)
184 3sxu_A DNA polymerase III subu 44.5 29 0.00099 32.6 5.5 75 336-423 22-104 (150)
185 3pvs_A Replication-associated 43.0 22 0.00076 39.0 5.1 13 125-137 106-118 (447)
186 2jgn_A DBX, DDX3, ATP-dependen 42.9 47 0.0016 31.3 6.9 59 37-99 39-104 (185)
187 3rc1_A Sugar 3-ketoreductase; 42.7 53 0.0018 34.2 7.9 104 302-410 66-174 (350)
188 3pg5_A Uncharacterized protein 42.7 13 0.00044 39.3 3.1 32 22-53 9-40 (361)
189 3fwy_A Light-independent proto 42.2 18 0.00062 37.8 4.1 30 23-52 56-85 (314)
190 3ec7_A Putative dehydrogenase; 41.9 75 0.0026 33.2 8.9 106 302-410 62-173 (357)
191 1s2m_A Putative ATP-dependent 41.6 59 0.002 33.6 7.9 63 33-99 248-316 (400)
192 1xti_A Probable ATP-dependent 41.2 54 0.0018 33.6 7.5 63 33-99 240-308 (391)
193 2p6n_A ATP-dependent RNA helic 40.4 65 0.0022 30.6 7.4 54 42-99 53-112 (191)
194 3mz0_A Inositol 2-dehydrogenas 40.4 82 0.0028 32.5 8.8 105 302-410 41-152 (344)
195 3of5_A Dethiobiotin synthetase 40.0 28 0.00095 34.5 4.9 31 19-49 9-39 (228)
196 1sxj_C Activator 1 40 kDa subu 39.5 22 0.00076 36.7 4.3 13 125-137 110-122 (340)
197 3fkq_A NTRC-like two-domain pr 39.3 22 0.00076 37.6 4.3 34 19-52 148-181 (373)
198 3igf_A ALL4481 protein; two-do 39.1 18 0.00061 39.0 3.5 32 20-51 7-38 (374)
199 2e50_A Protein SET; histone ch 39.0 59 0.002 32.6 7.1 46 632-677 32-77 (225)
200 1oyw_A RECQ helicase, ATP-depe 38.6 59 0.002 36.0 7.8 63 34-100 227-295 (523)
201 3hix_A ALR3790 protein; rhodan 38.1 44 0.0015 28.6 5.3 37 350-386 49-86 (106)
202 2r8r_A Sensor protein; KDPD, P 37.6 40 0.0014 34.0 5.6 35 19-53 10-44 (228)
203 1sxj_B Activator 1 37 kDa subu 37.5 21 0.00073 35.7 3.6 13 125-137 107-119 (323)
204 4b4t_J 26S protease regulatory 37.3 28 0.00096 38.0 4.7 98 249-364 143-251 (405)
205 4b4t_L 26S protease subunit RP 37.3 14 0.00048 40.7 2.4 99 248-364 175-284 (437)
206 3fgn_A Dethiobiotin synthetase 36.9 37 0.0013 34.4 5.3 47 4-50 10-62 (251)
207 2z4s_A Chromosomal replication 36.8 32 0.0011 37.4 5.2 14 125-138 194-207 (440)
208 3ec2_A DNA replication protein 36.6 23 0.00079 32.8 3.5 40 16-55 37-79 (180)
209 1xwi_A SKD1 protein; VPS4B, AA 35.5 38 0.0013 35.1 5.2 65 23-137 53-117 (322)
210 1w5s_A Origin recognition comp 34.8 63 0.0022 33.5 6.9 13 125-137 138-150 (412)
211 1sxj_D Activator 1 41 kDa subu 34.6 47 0.0016 33.8 5.7 13 125-137 133-145 (353)
212 1v5w_A DMC1, meiotic recombina 34.5 29 0.00098 36.4 4.2 38 16-53 121-166 (343)
213 3gk5_A Uncharacterized rhodane 34.4 38 0.0013 29.1 4.3 36 351-386 53-88 (108)
214 1gmx_A GLPE protein; transfera 34.2 57 0.0019 27.8 5.4 36 351-386 56-92 (108)
215 3pey_A ATP-dependent RNA helic 34.1 56 0.0019 33.3 6.2 63 33-99 233-301 (395)
216 3ipz_A Monothiol glutaredoxin- 34.0 1.5E+02 0.0051 25.5 8.2 52 352-404 16-73 (109)
217 3hws_A ATP-dependent CLP prote 33.5 54 0.0018 34.1 6.1 18 19-36 55-72 (363)
218 3ez2_A Plasmid partition prote 32.8 30 0.001 36.7 4.0 34 19-52 113-152 (398)
219 2jtq_A Phage shock protein E; 32.7 80 0.0027 25.5 5.9 30 351-380 39-68 (85)
220 2qgz_A Helicase loader, putati 32.7 36 0.0012 35.1 4.5 35 19-53 156-191 (308)
221 3foj_A Uncharacterized protein 32.5 38 0.0013 28.6 3.9 35 351-385 54-88 (100)
222 2w58_A DNAI, primosome compone 32.3 36 0.0012 31.9 4.2 34 19-52 58-91 (202)
223 3eme_A Rhodanese-like domain p 32.2 36 0.0012 28.8 3.8 35 351-385 54-88 (103)
224 4had_A Probable oxidoreductase 32.2 1.3E+02 0.0045 30.8 8.8 104 301-409 61-170 (350)
225 2zan_A Vacuolar protein sortin 32.1 53 0.0018 35.7 5.9 32 19-52 171-202 (444)
226 3moi_A Probable dehydrogenase; 31.7 1.1E+02 0.0037 32.3 8.2 103 302-410 41-149 (387)
227 2fsx_A RV0390, COG0607: rhodan 31.5 60 0.002 29.4 5.3 36 351-386 78-114 (148)
228 1hv8_A Putative ATP-dependent 31.4 93 0.0032 31.3 7.3 54 42-99 237-296 (367)
229 2yan_A Glutaredoxin-3; oxidore 31.1 1.6E+02 0.0055 24.7 7.8 58 345-404 9-72 (105)
230 2zr9_A Protein RECA, recombina 30.9 39 0.0013 35.7 4.5 39 16-54 60-100 (349)
231 1c4o_A DNA nucleotide excision 30.5 2.1E+02 0.0072 32.8 10.8 54 42-99 438-497 (664)
232 1h6d_A Precursor form of gluco 30.4 2E+02 0.0068 30.9 10.1 105 302-410 122-235 (433)
233 1um8_A ATP-dependent CLP prote 30.4 44 0.0015 34.9 4.8 16 125-140 137-152 (376)
234 1iqp_A RFCS; clamp loader, ext 30.4 26 0.0009 35.1 2.9 13 125-137 110-122 (327)
235 2j0s_A ATP-dependent RNA helic 30.4 98 0.0034 32.0 7.5 62 34-99 267-334 (410)
236 4hkt_A Inositol 2-dehydrogenas 30.0 1.3E+02 0.0043 30.8 8.1 101 303-410 42-148 (331)
237 3db2_A Putative NADPH-dependen 29.8 1.1E+02 0.0039 31.5 7.8 62 346-409 83-150 (354)
238 3qxc_A Dethiobiotin synthetase 29.3 52 0.0018 33.1 4.9 31 19-49 26-56 (242)
239 2k0z_A Uncharacterized protein 29.2 61 0.0021 27.8 4.7 37 350-386 53-89 (110)
240 4fb5_A Probable oxidoreductase 28.5 1.6E+02 0.0055 30.2 8.7 105 301-410 69-179 (393)
241 1tq1_A AT5G66040, senescence-a 28.2 42 0.0014 29.8 3.6 36 351-386 80-116 (129)
242 3ohs_X Trans-1,2-dihydrobenzen 28.1 1.7E+02 0.0058 29.9 8.7 104 302-410 42-151 (334)
243 2chq_A Replication factor C sm 27.9 25 0.00087 35.1 2.3 13 125-137 102-114 (319)
244 3iwh_A Rhodanese-like domain p 27.7 48 0.0016 28.6 3.8 35 351-385 54-88 (103)
245 2dr3_A UPF0273 protein PH0284; 27.4 80 0.0027 30.1 5.7 39 15-53 21-61 (247)
246 1ihu_A Arsenical pump-driving 27.4 59 0.002 36.5 5.4 34 19-52 331-364 (589)
247 1wv9_A Rhodanese homolog TT165 27.0 56 0.0019 27.1 4.0 35 351-386 52-86 (94)
248 3tbk_A RIG-I helicase domain; 27.0 1.8E+02 0.0062 31.1 9.1 54 353-410 52-109 (555)
249 2yjt_D ATP-dependent RNA helic 32.5 14 0.00047 34.3 0.0 58 38-99 25-88 (170)
250 4b4t_M 26S protease regulatory 26.2 25 0.00085 38.7 2.0 99 248-364 175-284 (434)
251 4ddu_A Reverse gyrase; topoiso 26.2 1.8E+02 0.0061 35.7 9.6 60 351-411 119-182 (1104)
252 3pfi_A Holliday junction ATP-d 26.1 59 0.002 33.1 4.7 17 19-35 59-75 (338)
253 2i4i_A ATP-dependent RNA helic 26.0 1.2E+02 0.0042 31.2 7.3 58 38-99 270-334 (417)
254 1yrb_A ATP(GTP)binding protein 26.0 62 0.0021 31.5 4.7 32 19-52 18-50 (262)
255 3ez9_A Para; DNA binding, wing 26.0 28 0.00096 37.1 2.3 34 19-52 116-155 (403)
256 3bh0_A DNAB-like replicative h 26.0 53 0.0018 33.9 4.4 37 15-51 66-104 (315)
257 2ce7_A Cell division protein F 25.9 68 0.0023 35.6 5.4 14 125-138 108-121 (476)
258 2pl3_A Probable ATP-dependent 25.6 2.5E+02 0.0086 26.6 9.0 36 351-386 95-134 (236)
259 2db3_A ATP-dependent RNA helic 25.6 1.4E+02 0.0049 31.7 7.9 53 43-99 300-358 (434)
260 4b4t_I 26S protease regulatory 25.4 29 0.001 38.3 2.3 99 248-364 176-285 (437)
261 4dik_A Flavoprotein; TM0755, e 25.4 2.8E+02 0.0095 29.9 10.1 102 304-414 224-331 (410)
262 2v1x_A ATP-dependent DNA helic 25.4 1.1E+02 0.0039 34.4 7.3 54 42-99 266-325 (591)
263 3flh_A Uncharacterized protein 25.2 49 0.0017 29.1 3.4 36 351-386 69-106 (124)
264 3pzx_A Formate--tetrahydrofola 25.2 50 0.0017 37.3 4.1 30 25-54 71-100 (557)
265 2eyq_A TRCF, transcription-rep 24.6 46 0.0016 40.9 4.1 76 334-410 633-713 (1151)
266 2zts_A Putative uncharacterize 24.5 71 0.0024 30.5 4.7 37 16-52 29-68 (251)
267 4b4t_K 26S protease regulatory 24.3 34 0.0012 37.5 2.7 99 248-364 166-275 (428)
268 3q2i_A Dehydrogenase; rossmann 24.3 1.9E+02 0.0064 29.9 8.3 62 347-410 93-160 (354)
269 1t6n_A Probable ATP-dependent 24.2 2.5E+02 0.0084 26.3 8.5 55 353-410 82-141 (220)
270 1gm5_A RECG; helicase, replica 24.1 1.7E+02 0.0058 34.4 8.7 77 334-411 398-479 (780)
271 1vee_A Proline-rich protein fa 24.0 77 0.0026 28.2 4.6 36 351-386 72-108 (134)
272 3e70_C DPA, signal recognition 23.9 1E+02 0.0035 32.3 6.1 52 23-75 137-188 (328)
273 1hf2_A MINC, septum site-deter 23.8 26 0.00089 34.6 1.4 44 551-605 129-174 (210)
274 2hhg_A Hypothetical protein RP 23.8 66 0.0022 28.5 4.1 36 351-386 84-120 (139)
275 3fs3_A Nucleosome assembly pro 23.8 1.3E+02 0.0045 32.3 6.9 45 633-677 56-100 (359)
276 4a2p_A RIG-I, retinoic acid in 23.7 1.8E+02 0.0063 31.2 8.4 54 353-410 55-112 (556)
277 4b4t_H 26S protease regulatory 23.7 38 0.0013 37.7 2.9 99 248-364 203-312 (467)
278 3ilm_A ALR3790 protein; rhodan 23.5 60 0.002 29.5 3.8 37 350-386 53-90 (141)
279 1qxn_A SUD, sulfide dehydrogen 23.3 69 0.0024 28.8 4.1 36 351-386 80-116 (137)
280 2nvw_A Galactose/lactose metab 23.2 2.6E+02 0.009 30.5 9.6 104 302-409 82-199 (479)
281 2yv1_A Succinyl-COA ligase [AD 23.2 3.2E+02 0.011 28.0 9.6 110 291-414 18-131 (294)
282 4a1f_A DNAB helicase, replicat 23.1 73 0.0025 33.7 4.8 38 14-51 43-82 (338)
283 1zh8_A Oxidoreductase; TM0312, 23.0 2.6E+02 0.0088 28.8 9.0 78 327-408 82-165 (340)
284 2oxc_A Probable ATP-dependent 22.9 1.4E+02 0.0048 28.5 6.5 35 352-386 91-130 (230)
285 3uuw_A Putative oxidoreductase 22.9 91 0.0031 31.5 5.4 36 347-382 84-122 (308)
286 3u4q_B ATP-dependent helicase/ 22.7 1.9E+02 0.0064 35.3 9.0 54 333-386 318-376 (1166)
287 3u4q_B ATP-dependent helicase/ 22.7 1.2E+02 0.0042 37.0 7.4 86 19-137 5-93 (1166)
288 3euw_A MYO-inositol dehydrogen 22.7 1.9E+02 0.0064 29.7 7.8 103 302-410 42-150 (344)
289 2wul_A Glutaredoxin related pr 22.6 2.4E+02 0.0083 25.2 7.6 54 354-408 20-82 (118)
290 2yhs_A FTSY, cell division pro 22.6 2E+02 0.0069 32.2 8.4 31 23-53 301-331 (503)
291 2xau_A PRE-mRNA-splicing facto 22.3 2.3E+02 0.008 33.1 9.3 58 42-99 302-377 (773)
292 1wp9_A ATP-dependent RNA helic 22.2 1.4E+02 0.0049 30.8 6.9 54 42-99 360-427 (494)
293 3gx8_A Monothiol glutaredoxin- 22.2 3.1E+02 0.011 24.1 8.2 51 353-404 15-74 (121)
294 3e9m_A Oxidoreductase, GFO/IDH 21.9 2.5E+02 0.0085 28.7 8.6 63 346-410 84-152 (330)
295 4f3y_A DHPR, dihydrodipicolina 21.9 1.2E+02 0.0041 31.0 6.0 56 355-412 75-130 (272)
296 3bgw_A DNAB-like replicative h 21.6 72 0.0025 34.8 4.5 38 14-51 194-233 (444)
297 3i5x_A ATP-dependent RNA helic 21.3 2E+02 0.0069 31.3 8.2 57 42-99 338-400 (563)
298 2wci_A Glutaredoxin-4; redox-a 21.3 2.5E+02 0.0086 25.4 7.5 49 355-404 36-90 (135)
299 4amu_A Ornithine carbamoyltran 21.2 2.9E+02 0.0098 29.7 9.0 90 3-99 159-259 (365)
300 3u3x_A Oxidoreductase; structu 21.2 1.4E+02 0.0049 31.1 6.6 80 327-410 88-174 (361)
301 2zpa_A Uncharacterized protein 21.2 65 0.0022 37.5 4.2 52 3-57 176-231 (671)
302 4h3v_A Oxidoreductase domain p 21.2 3.8E+02 0.013 27.3 9.9 106 300-410 49-163 (390)
303 3nhv_A BH2092 protein; alpha-b 21.0 86 0.0029 28.5 4.3 36 351-386 70-107 (144)
304 3zyw_A Glutaredoxin-3; metal b 21.0 3.1E+02 0.011 23.6 7.8 52 352-404 14-71 (111)
305 2dko_A Caspase-3; low barrier 20.7 2.1E+02 0.0073 26.5 7.0 56 56-112 39-116 (146)
306 1w36_B RECB, exodeoxyribonucle 20.5 1.7E+02 0.006 35.8 8.1 46 339-384 519-582 (1180)
307 2ayu_A Nucleosome assembly pro 20.5 2.1E+02 0.0072 31.3 7.8 50 630-679 94-143 (417)
308 4a2q_A RIG-I, retinoic acid in 20.4 2.4E+02 0.0082 32.7 8.9 54 353-410 296-353 (797)
309 3od5_A Caspase-6; caspase doma 20.3 2.5E+02 0.0086 28.7 8.1 57 56-113 44-122 (278)
310 4gqa_A NAD binding oxidoreduct 20.3 2.3E+02 0.0078 29.9 8.1 105 301-410 71-181 (412)
311 3eiq_A Eukaryotic initiation f 20.2 76 0.0026 32.7 4.2 63 33-99 270-338 (414)
No 1
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-184 Score=1594.34 Aligned_cols=639 Identities=51% Similarity=0.781 Sum_probs=582.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||+|+++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCCcHHHHhhcccccCCceeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+++..+++++|+++|+||||||+||+|+|++|||||||.+....+|.
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~ 237 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY 237 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred CCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHH
Confidence 99999999999999999999999999999998888888888888999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCC------------CeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccC
Q 005155 161 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 161 ~~~~i~~~l~~~~------------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d 227 (711)
.++.++..|+++. ||++|+++|+++||++|+.++|+++++++||++.+ .|.|||++||+|+++|++|
T Consensus 238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd 317 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317 (997)
T ss_dssp HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998643 99999999999999999999999999999999887 6999999999999999999
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
+||||+||+|+|||+||||+|+|||||+||||||||||||+|++||+|+|+|||||||++|+||+||||||+||++||++
T Consensus 318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~ 397 (997)
T 2ipc_A 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE 397 (997)
T ss_dssp HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred CCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH-------------
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK------------- 374 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~------------- 374 (711)
+||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||++||.||++|+
T Consensus 398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~ 477 (997)
T 2ipc_A 398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL 477 (997)
T ss_dssp HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred HhCCCEEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------------------HCCCCeEEEeCCCcchH
Q 005155 375 ---------------------------------------------------------------QQGIPHNVLNARPKYAA 391 (711)
Q Consensus 375 ---------------------------------------------------------------~~gi~~~vLnA~~~~~~ 391 (711)
+.||||+|||| ++|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he 555 (997)
T 2ipc_A 478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA 555 (997)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred hhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccc--cchH
Confidence 78999999999 6899
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHH
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA 471 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (711)
+||+||++||++|+||||||||||||||+|||||+++++..++..... +. . +...
T Consensus 556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~-----------------~~--~-----~~~~- 610 (997)
T 2ipc_A 556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFD-----------------RY--E-----WKVE- 610 (997)
T ss_dssp HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSS-----------------TT--H-----HHHH-
T ss_pred HHHHHHHhcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccc-----------------cc--c-----cccc-
Confidence 999999999999999999999999999999999999986443211000 00 0 0000
Q ss_pred HHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccc
Q 005155 472 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG 551 (711)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (711)
.. ..+++.. ...|.. .+.+. ...++.++. .+.++++.|.+++
T Consensus 611 ~~-----~~~~~~~--~~~~~~----------------~~~~~--------------~~~~~~~~~-~~~~~~~~~~~e~ 652 (997)
T 2ipc_A 611 LF-----IKKMVAG--KEEEAR----------------ALAQE--------------LGIREELLE-RIREIREECKQDE 652 (997)
T ss_dssp HH-----HHHHHHT--CHHHHH----------------HHHHH--------------TTCCHHHHH-HHHHHHHHHHHHH
T ss_pred cc-----ccccccc--chhhcc----------------ccchh--------------hhhhhhHHH-HHHHhhhhhhhhh
Confidence 00 0000000 000000 00000 012233333 3566899999999
Q ss_pred hhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHH
Q 005155 552 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI 631 (711)
Q Consensus 552 ~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 631 (711)
++|+++|||||||||||||||||||||||||||||||||+|||||||||||+|| ++++.++|.++++++|+||+|+|+
T Consensus 653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v 730 (997)
T 2ipc_A 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV 730 (997)
T ss_dssp HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred hHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHHHHhhc--hHHHHHHHHHcCCCCCCcccchHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 632 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
+++|++||++||++||++||+|++||+|||.||++||++|++||++..+++++.|.+|++++++++|+.|+++..
T Consensus 731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~ 805 (997)
T 2ipc_A 731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEV 805 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999999999999997644789999999999999999988865543
No 2
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.5e-176 Score=1501.78 Aligned_cols=566 Identities=49% Similarity=0.786 Sum_probs=554.2
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~- 79 (711)
|||||||++||++||+|+||||+|||||||+|+||+||+||.|++|||||||+|||+||++||+++|+||||+|+++++
T Consensus 74 ~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~ 153 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSL 153 (822)
T ss_dssp CCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CCCcHHHHHHHHHHhCCChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------CCCHHHHHhccCCCeEEECCCchhhHHHHHh
Q 005155 80 -------------------------------------------------GMIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (711)
Q Consensus 80 -------------------------------------------------~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~ 110 (711)
+|++++|+++|.||||||||++|||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 154 GKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp TEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred CcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhh
Confidence 6889999999999999999999999999999
Q ss_pred hhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhh
Q 005155 111 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 190 (711)
Q Consensus 111 l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G 190 (711)
|+.+++++||| +++||||||||||||||||||||||||.+.++++|..++++++.|.++.||++|++.|+++||++|
T Consensus 234 m~~~~~~~vqR---~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G 310 (822)
T 3jux_A 234 LVLDYNDKVQR---GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310 (822)
T ss_dssp SCSSTTSCCCC---CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHH
T ss_pred ccCCHHHhccC---CCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHH
Confidence 99999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCcc
Q 005155 191 IALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKI 269 (711)
Q Consensus 191 ~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I 269 (711)
++++|+++++++||++.+ +|.+||++||+|+++|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|
T Consensus 311 ~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i 390 (822)
T 3jux_A 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPI 390 (822)
T ss_dssp HHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCC
T ss_pred HHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCC
Confidence 999999999999999876 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHh
Q 005155 270 QADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM 349 (711)
Q Consensus 270 ~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~ 349 (711)
++||+|+|+|||||||++|+||+||||||+++++||.++||++|++||||+|+.|.+.++.+|.+..+||.+|+++|.++
T Consensus 391 ~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 391 KEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHH
Q 005155 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLA 429 (711)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~ 429 (711)
|.+||||||||+|++.||.|++.|++.|++|++|||+ ++++|++++++||++|+||||||||||||||+|||
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~------ 542 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGP------ 542 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCT------
T ss_pred hhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--chHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCc------
Confidence 9999999999999999999999999999999999994 89999999999999999999999999999999993
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhh
Q 005155 430 KKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQS 509 (711)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (711)
T Consensus 543 -------------------------------------------------------------------------------- 542 (822)
T 3jux_A 543 -------------------------------------------------------------------------------- 542 (822)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCc
Q 005155 510 MNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGS 589 (711)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGs 589 (711)
+|+++||||||+|++|+|+|+|+|++|||||||+||+
T Consensus 543 -------------------------------------------~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 543 -------------------------------------------GVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp -------------------------------------------TTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred -------------------------------------------chhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 5788999999999999999999999999999999999
Q ss_pred ceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Q 005155 590 TRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 669 (711)
Q Consensus 590 s~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~ 669 (711)
|+||+|+||++|++|| ++++.++|.++++++|+||+++|++++|++||++||++||++||++++||+|||.||++||+
T Consensus 580 a~~fvsleD~l~r~fg--~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~ 657 (822)
T 3jux_A 580 SIFFLSLEDDLLRIFG--SEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYS 657 (822)
T ss_dssp EEEEEETTSHHHHHTT--HHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhHHHHHhhh--HHHHHHHHHHcCCCCCceeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 670 LRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 670 ~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
+|++||++ +++.+.|.+|++++++++++.|+++
T Consensus 658 ~R~~iL~~--~~~~~~i~~~~~~~~~~~~~~~~~~ 690 (822)
T 3jux_A 658 LRDQILLE--KDYDEYLKDIFEDVVSTRVEEFCSG 690 (822)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999965 5899999999999999999888753
No 3
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-165 Score=1439.00 Aligned_cols=607 Identities=48% Similarity=0.784 Sum_probs=576.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+|+||+|+++|.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHhHhcCCEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+++..++| +++|+|||||||||+|+|+||||||||.+.+..+|.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr---~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccC---CCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH
Confidence 99999999999999999999999999999998887788898 999999999999999999999999999999989999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .+.++|.+||+|+.+|++|+||||+||+|+|
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEE
Confidence 999999999878899999999999999999999999999999999987 5999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+|||||+|||||||+||||+|++++.|+++|||||||++|+||+||||||++|++||+++||++|++||||
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.+|.+..+||.+|+++|.++|+.||||||||.|++.||.|++.|++.||+|++|||+ ++++|++|+++
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak--~~~rEa~iia~ 504 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEATIIAV 504 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHHHHHHT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC--hhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 79999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||++|||++++++..++..... | .
T Consensus 505 agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~------~----~---------------------------- 546 (922)
T 1nkt_A 505 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD------P----V---------------------------- 546 (922)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC------T----T----------------------------
T ss_pred cCCCCeEEEecchhhcCccccCCCCHHHHHHHHHhhcccc------c----c----------------------------
Confidence 9999999999999999999999999999987655431100 0 0
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
. .+ ......|...+.++++.|..++++|+++||
T Consensus 547 -------------------------~-----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 547 -------------------------E-----TP-----------------EEYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp -------------------------T-----SH-----------------HHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred -------------------------c-----cc-----------------hhhHHHHHHHHHHHHHHHHHhhhHHHhcCC
Confidence 0 00 001123445566788999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||+|||+|||||||||||||+|+||||+||+|||+|| ++++..+|.++++++++||++++++++|++||
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~aQ 657 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIEAKMVTRAIKSAQ 657 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCCCHHHHHHHHHHH
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhh--hHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHh-hc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF-GN 701 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~ 701 (711)
++||++||++||++++||+|||.||++||++|++||++ +++++.|.+|++++++++|+ .|
T Consensus 658 kkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~~~~~v~~~~ 718 (922)
T 1nkt_A 658 TQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYVDGAT 718 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999954 58999999999999999998 55
No 4
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.2e-159 Score=1387.60 Aligned_cols=597 Identities=46% Similarity=0.716 Sum_probs=457.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||+++++|.|++|||+|||+|||.||++||+++|+++|++|++++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG 152 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG 152 (853)
T ss_dssp CCCCHHHHHHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCChHHHhhcccccCCeeeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+|||+||||++|+||||||+|..+++..+++ +++|+||||||+||+|+|++|||||||.+..+.+|.
T Consensus 153 ~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~---~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 153 MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---SCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhccc---CCcEEEECchHHHHHhcCcccccccCCCccchhHHH
Confidence 99999999999999999999999999999998877788888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|+++ .||++|++.++++||+.|+.++|+++ ++ ++||++++ .+.++|++||+|+
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 999999999753 49999999999999999999999999 55 57999987 5899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
.+|++|+||+|+||+|+|||++|||+|+||+||+|||||||+||+|+|++++.|+++||||+||++|++|+||||||+||
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
++||+++||++|++||||+|++|+|+||.+|.+..+||.+|+++|.++|..||||||||+|++.||.|++.|++.|++|+
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
+|||+ ++++|++|+++||++|+||||||||||||||++||||++++... . +
T Consensus 470 vLnak--~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~~------~----~----------------- 520 (853)
T 2fsf_A 470 VLNAK--FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAAL------E----N----------------- 520 (853)
T ss_dssp ECCTT--CHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHHC------S----S-----------------
T ss_pred EecCC--hhHHHHHHHHhcCCCCeEEEecccccCCcCccCCCchHhhhhhc------c----c-----------------
Confidence 99994 79999999999999999999999999999999999999987310 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
.+ .+.+.
T Consensus 521 ----------------------------------------------------------------~~---------~~~~~ 527 (853)
T 2fsf_A 521 ----------------------------------------------------------------PT---------AEQIE 527 (853)
T ss_dssp ----------------------------------------------------------------CC---------SSHHH
T ss_pred ----------------------------------------------------------------ch---------hHHHH
Confidence 00 00134
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|.++||||||||+||+|+|+|+||+||||||||||+|+||||+||++||.|| ++++..+|.+++++
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~--~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA--SDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTC--CHHHHTTGGGGCCC
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhh--HHHHHHHHHhhCCC
Confidence 5678888999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||+++|++||++||++++||+|||.||++||++|+++|++ +++++.|.+|++++++++|+.|
T Consensus 606 ~~~~i~~~~~~~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~--~~~~~~i~~~~~~~~~~~~~~~ 683 (853)
T 2fsf_A 606 PGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV--SDVSETINSIREDVFKATIDAY 683 (853)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHTT
T ss_pred CccccchHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999965 5899999999999999999988
Q ss_pred CCCcc
Q 005155 702 VDPLK 706 (711)
Q Consensus 702 ~~~~~ 706 (711)
+++..
T Consensus 684 ~~~~~ 688 (853)
T 2fsf_A 684 IPPQS 688 (853)
T ss_dssp SCTTC
T ss_pred cCccc
Confidence 76644
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.4e-152 Score=1324.10 Aligned_cols=568 Identities=49% Similarity=0.796 Sum_probs=552.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+|+||+|||||||+|+||+|++||.|++|||||||+|||.||++||++||++|||+|++++++
T Consensus 82 ~~pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCcHHHHHhhHHHhCCCEEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+.+..+++ +++|+|||||||||+|+|+||||||||.+.++.+|+
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr---~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhccc---CCCEEEECchhhhhhhccccchhhcCCcccchhHHH
Confidence 99999999999999999999999999999998777778888 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .|.++|.+||+|+.+|++|+||+|+||+|+|
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEE
Confidence 999999999877799999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+||+||+|||||||+||+|+|++++.|+++||||+||++|++++||||||+++++||.++|+++|+.||||
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred eecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|.|+++.+|.+..+||.+|++++.++|..|+||||||+|++.||.|+..|++.|++|++|||+ ++++|++++++
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~--~~~rEr~ii~~ 476 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK--NHEREAQIIEE 476 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS--CHHHHHHHHTT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--ccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 78999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+||
T Consensus 477 ag~~g~VlIATdmAgRG~DI~l~--------------------------------------------------------- 499 (844)
T 1tf5_A 477 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 499 (844)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred cCCCCeEEEeCCccccCcCcccc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
++|+++||
T Consensus 500 ------------------------------------------------------------------------~~V~~~gg 507 (844)
T 1tf5_A 500 ------------------------------------------------------------------------EGVKELGG 507 (844)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------chhhhcCC
Confidence 57899999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
||||+|++|+|+|+|+|++||||||||||+|+||+|+||++|+.|| ++++..+|.++++++++||+++++++++++||
T Consensus 508 l~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 585 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQSKMVSRAVESSQ 585 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHH
T ss_pred cEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHh--HHHHHHHHHhcCCCCccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
+++|++||++||++++||+|||.||++||++|+++|++ +++.+.|.+|++++++++|+.|+++..
T Consensus 586 ~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (844)
T 1tf5_A 586 KRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS--ENLREIVENMIKSSLERAIAAYTPREE 650 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999954 689999999999999999998876543
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=2e-28 Score=268.72 Aligned_cols=277 Identities=18% Similarity=0.232 Sum_probs=195.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++-..+. |..+.|++|+++||.|.++++..+....+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC
Confidence 59999999999999988 999999999999999999754443 56899999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+++++++++.+...+ ...-++||+++|++.| .|+|... ....+ .+.++||||||.|+ |.+
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~~~~lVlDEah~~~-~~g------- 219 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRL-LDFVDRT------FITFE---DTRFVVLDEADRML-DMG------- 219 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH-HHHHHTT------SCCCT---TCCEEEEETHHHHT-STT-------
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHH-HHHHHhC------Ccccc---cCCeEEEccHhhhh-ccC-------
Confidence 999999999875433 3345789999999987 4554322 12244 78999999999986 443
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
+.+.+..++..+.. ...+++. +++++. ...+... +..++. +
T Consensus 220 --------f~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~--~~~~~~~--~~~~l~---~ 260 (434)
T 2db3_A 220 --------FSEDMRRIMTHVTM-------RPEHQTL-----------------MFSATF--PEEIQRM--AGEFLK---N 260 (434)
T ss_dssp --------THHHHHHHHHCTTS-------CSSCEEE-----------------EEESCC--CHHHHHH--HHTTCS---S
T ss_pred --------cHHHHHHHHHhcCC-------CCCceEE-----------------EEeccC--CHHHHHH--HHHhcc---C
Confidence 23455566555421 1234444 455553 2233322 122221 2
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
|+. +.++.. + .+...+
T Consensus 261 ~~~-----i~~~~~-~----------------------------~~~~~i------------------------------ 276 (434)
T 2db3_A 261 YVF-----VAIGIV-G----------------------------GACSDV------------------------------ 276 (434)
T ss_dssp CEE-----EEESST-T----------------------------CCCTTE------------------------------
T ss_pred CEE-----EEeccc-c----------------------------cccccc------------------------------
Confidence 221 001000 0 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....+......|...+++.+.+ .+.++||||++++.++.+++.|.+.|+++..+|+++.+
T Consensus 277 -----------------~~~~~~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~ 336 (434)
T 2db3_A 277 -----------------KQTIYEVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ 336 (434)
T ss_dssp -----------------EEEEEECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCH
T ss_pred -----------------ceEEEEeCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCH
Confidence 0012234556788887776654 33459999999999999999999999999999998777
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||++|+||+||.
T Consensus 337 ~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 337 SQREQALRDFKNG-SMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHHTS-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHcC-CCcEEEEchhhhCCCCcc
Confidence 777766655 556 568999999999999994
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=2.5e-27 Score=254.20 Aligned_cols=273 Identities=16% Similarity=0.203 Sum_probs=186.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++ ..+ .+..+.|++|+..||.+-++.+..+...+++.++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH-HHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEE
Confidence 48999999999999887 9999999999999999997 444 4679999999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...++.+... +...+.++|+++|++.| ++.++.. ....+ .+.++||||||.++ +..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~----------- 195 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTR---AIKMLVLDEADEML-NKG----------- 195 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHH-HHHHHhC------CccHh---heeEEEEccHHHHH-hhh-----------
Confidence 9999877443 34457899999999887 4555432 12233 78999999999986 321
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+...+..+...+.+ ..
T Consensus 196 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 211 (410)
T 2j0s_A 196 ----FKEQIYDVYRYLPP---------AT--------------------------------------------------- 211 (410)
T ss_dssp ----THHHHHHHHTTSCT---------TC---------------------------------------------------
T ss_pred ----hHHHHHHHHHhCcc---------Cc---------------------------------------------------
Confidence 12222222222211 11
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
++.+||+|...+..++.+.|-.+.
T Consensus 212 --------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 212 --------------------------------------------------------QVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHTTGGGTCSSC
T ss_pred --------------------------------------------------------eEEEEEcCCCHHHHHHHHHHcCCC
Confidence 133444444433333222222211
Q ss_pred EEeCCCCCc-cccc-CCCeEEe-ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 314 IEVPTNLPN-IRVD-LPIQSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 314 v~IPt~~p~-~R~d-~~d~i~~-t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
+.+...... .... ....+.. ....|...+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+|+++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 313 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred EEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHH
Confidence 111111000 0000 0011122 2334666666555442 456899999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++..+-. +.| ...|.|||++++||+||.
T Consensus 314 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 314 ERESIMKEFRSG-ASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHT-SSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhCcCCcc
Confidence 66654444 556 567999999999999994
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=5.5e-27 Score=251.22 Aligned_cols=279 Identities=17% Similarity=0.153 Sum_probs=187.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------------------CCCEEEEecCHHHHHH
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------------------GEGVHVVTVNDYLAQR 58 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------------------G~~VhVvT~NdyLA~R 58 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++.+|++...+. +..+.|++|+..||.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 58999999999999887 999999999999999999744332 2469999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 59 DAEWMERVHRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 59 Dae~~~~~y~~LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
-++++..+...++++++.+.++.+.... ...-.++|+++|++.| .+++.. . ..... .+.++||||||.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~--~~~~~---~~~~iViDEah~ 186 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL-VDMMER----G--KIGLD---FCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH-HHHHHT----T--SBCCT---TCCEEEESSHHH
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH-HHHHHc----C--CcChh---hCcEEEEEChhH
Confidence 9999999999999999999998875433 3345689999999887 333332 1 12234 789999999999
Q ss_pred hhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHH
Q 005155 137 VLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (711)
Q Consensus 137 ~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~ 216 (711)
++ +.++ ...+..+...+... .....
T Consensus 187 ~~-~~~~---------------~~~~~~i~~~~~~~-----~~~~~---------------------------------- 211 (417)
T 2i4i_A 187 ML-DMGF---------------EPQIRRIVEQDTMP-----PKGVR---------------------------------- 211 (417)
T ss_dssp HH-HTTC---------------HHHHHHHHTSSSCC-----CBTTB----------------------------------
T ss_pred hh-ccCc---------------HHHHHHHHHhccCC-----CcCCc----------------------------------
Confidence 86 3321 12222222211000 00011
Q ss_pred HHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccC
Q 005155 217 ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTG 296 (711)
Q Consensus 217 AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTG 296 (711)
++.+||+
T Consensus 212 -------------------------------------------------------------------------~~i~~SA 218 (417)
T 2i4i_A 212 -------------------------------------------------------------------------HTMMFSA 218 (417)
T ss_dssp -------------------------------------------------------------------------EEEEEES
T ss_pred -------------------------------------------------------------------------EEEEEEE
Confidence 2334444
Q ss_pred CcccHHHHHHHHc-CCCeE-EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH
Q 005155 297 TAKTEEKEFLKMF-QMPVI-EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK 374 (711)
Q Consensus 297 Ta~te~~Ef~~iY-~l~vv-~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~ 374 (711)
|...+..++...| +-.+. .+.........-....++.....|...+.+.+.. +..+.++||||++++.++.+++.|.
T Consensus 219 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (417)
T 2i4i_A 219 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLY 297 (417)
T ss_dssp CCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4443333322222 11111 1111000000000123345566777776655543 4567899999999999999999999
Q ss_pred HCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 375 QQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 375 ~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.|+++..+|+++...+++..+-. +.| ...|.|||++++||+||.
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip 343 (417)
T 2i4i_A 298 HEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDIS 343 (417)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEEECHHHHTTSCCC
T ss_pred HCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcc
Confidence 999999999998766666654444 456 557999999999999994
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=2.5e-26 Score=245.26 Aligned_cols=273 Identities=17% Similarity=0.172 Sum_probs=185.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..|+.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHH-HHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 48999999999998877 9999999999999999997 444 4568999999999999999999999999999999
Q ss_pred EEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...++...... ...-.++|+++|++.| .+++... ....+ .+.++||||||.++-+.
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~------~~~~~---~~~~vIiDEaH~~~~~~------------ 179 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRV-LDLASRK------VADLS---DCSLFIMDEADKMLSRD------------ 179 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEESHHHHSSHH------------
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHH-HHHHHhC------Ccccc---cCCEEEEeCchHhhhhc------------
Confidence 99988775433 3345689999999876 3333321 12234 78999999999874111
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+...+..+...+.+ ..
T Consensus 180 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 195 (400)
T 1s2m_A 180 ----FKTIIEQILSFLPP---------TH--------------------------------------------------- 195 (400)
T ss_dssp ----HHHHHHHHHTTSCS---------SC---------------------------------------------------
T ss_pred ----hHHHHHHHHHhCCc---------Cc---------------------------------------------------
Confidence 11112222211110 01
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHH-HHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF-LKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef-~~iY~l~ 312 (711)
++.+||+|......++ ...++.+
T Consensus 196 --------------------------------------------------------~~i~lSAT~~~~~~~~~~~~~~~~ 219 (400)
T 1s2m_A 196 --------------------------------------------------------QSLLFSATFPLTVKEFMVKHLHKP 219 (400)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHHHHHHHCSSC
T ss_pred --------------------------------------------------------eEEEEEecCCHHHHHHHHHHcCCC
Confidence 2334555554433332 2233322
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
+..................+.....|...+...+.. ..+.++||||++++.++.+++.|++.|+++..+|+++...++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 297 (400)
T 1s2m_A 220 YEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 297 (400)
T ss_dssp EEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred eEEEeccccccCCceeEEEEechhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHH
Confidence 221111000000001112234556677766555543 356799999999999999999999999999999998666565
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+-. +.| ...|.|||+++++|+||.
T Consensus 298 ~~~~~~f~~g-~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 298 NKVFHEFRQG-KVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp HHHHHHHHTT-SSSEEEESSCSSSSCCCT
T ss_pred HHHHHHHhcC-CCcEEEEcCccccCCCcc
Confidence 544444 455 568999999999999994
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.9e-26 Score=239.75 Aligned_cols=271 Identities=17% Similarity=0.167 Sum_probs=187.4
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|+|.|..+...+++|+ ++.+.||+|||+++.+|+.-... .|..|.|++|+..|+.+-++++..++...+++++.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 58999999999988773 88999999999999999873322 37789999999999999999999999999999999
Q ss_pred EcCCCCHHH-HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC
Q 005155 77 IQRGMIPEE-RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (711)
Q Consensus 77 i~~~~~~~~-r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~ 155 (711)
+.++.+... ......++|+++|++.| ++.+. .. ....+ .++++||||||.++ +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~----~~--~~~~~---~~~~iIiDEah~~~-~~~------------- 163 (367)
T 1hv8_A 108 IYGGKAIYPQIKALKNANIVVGTPGRI-LDHIN----RG--TLNLK---NVKYFILDEADEML-NMG------------- 163 (367)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHH-HHHHH----TT--CSCTT---SCCEEEEETHHHHH-TTT-------------
T ss_pred EECCcchHHHHhhcCCCCEEEecHHHH-HHHHH----cC--Ccccc---cCCEEEEeCchHhh-hhc-------------
Confidence 998877433 23334789999999876 33332 21 12234 78999999999985 211
Q ss_pred ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCC
Q 005155 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNG 235 (711)
Q Consensus 156 ~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~ 235 (711)
++..+..+...+.+ .
T Consensus 164 --~~~~~~~~~~~~~~---------~------------------------------------------------------ 178 (367)
T 1hv8_A 164 --FIKDVEKILNACNK---------D------------------------------------------------------ 178 (367)
T ss_dssp --THHHHHHHHHTSCS---------S------------------------------------------------------
T ss_pred --hHHHHHHHHHhCCC---------C------------------------------------------------------
Confidence 12222222222211 0
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEE
Q 005155 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIE 315 (711)
Q Consensus 236 ~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~ 315 (711)
.++.+||+|...+..++..-|--+...
T Consensus 179 -----------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~ 205 (367)
T 1hv8_A 179 -----------------------------------------------------KRILLFSATMPREILNLAKKYMGDYSF 205 (367)
T ss_dssp -----------------------------------------------------CEEEEECSSCCHHHHHHHHHHCCSEEE
T ss_pred -----------------------------------------------------ceEEEEeeccCHHHHHHHHHHcCCCeE
Confidence 123456666655443333322222222
Q ss_pred eCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHH
Q 005155 316 VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAE 395 (711)
Q Consensus 316 IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~ 395 (711)
++...+. .-....+.....+|+.++.+.+. ..+.++||||++++.++.+++.|++.|+++..+|++....+++..
T Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 206 IKAKINA--NIEQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp EECCSSS--SSEEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHH
T ss_pred EEecCCC--CceEEEEEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 2221111 00012233456678887776664 577899999999999999999999999999999998666666544
Q ss_pred HHH-hcCCCccEEEEcCCCcCCccee
Q 005155 396 TVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 396 Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~~~f~~~-~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 281 IRLFKQK-KIRILIATDVMSRGIDVN 305 (367)
T ss_dssp HHHHHTT-SSSEEEECTTHHHHCCCS
T ss_pred HHHHHcC-CCeEEEECChhhcCCCcc
Confidence 444 455 568999999999999994
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=5.2e-26 Score=241.23 Aligned_cols=274 Identities=20% Similarity=0.173 Sum_probs=188.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|+. ..+. +..|.|++|+..|+.+-++++..+...+ ++++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH-HhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 48999999999998877 9999999999999999997 4442 5689999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
+.+.++.+....... ..++|+++|++.| .++++. . ....+ .+.++||||||.++-+.
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~----~--~~~~~---~~~~vViDEaH~~~~~~---------- 168 (391)
T 1xti_A 109 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN----K--SLNLK---HIKHFILDECDKMLEQL---------- 168 (391)
T ss_dssp EEECTTSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT----T--SSCCT---TCSEEEECSHHHHTSSH----------
T ss_pred EEEeCCCCHHHHHHHHhcCCCCEEEECHHHH-HHHHHc----C--Ccccc---ccCEEEEeCHHHHhhcc----------
Confidence 999998875444322 3479999999876 233322 1 12234 79999999999985211
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
.....+..+...+.. .
T Consensus 169 -----~~~~~~~~~~~~~~~---------~-------------------------------------------------- 184 (391)
T 1xti_A 169 -----DMRRDVQEIFRMTPH---------E-------------------------------------------------- 184 (391)
T ss_dssp -----HHHHHHHHHHHTSCS---------S--------------------------------------------------
T ss_pred -----chHHHHHHHHhhCCC---------C--------------------------------------------------
Confidence 011111111111100 0
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH-HHcC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL-KMFQ 310 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~-~iY~ 310 (711)
.++.+||+|......++. ..++
T Consensus 185 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 185 ---------------------------------------------------------KQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp ---------------------------------------------------------SEEEEEESSCCSTHHHHHHHHCS
T ss_pred ---------------------------------------------------------ceEEEEEeeCCHHHHHHHHHHcC
Confidence 124566777665544433 3333
Q ss_pred CCe-EEeCCCCCcccccC-CCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 311 MPV-IEVPTNLPNIRVDL-PIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 311 l~v-v~IPt~~p~~R~d~-~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
-++ +.++...+...... ...+......|...+.+.+... .+.++||||++++.++.+++.|.+.|+++..+|+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 285 (391)
T 1xti_A 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP 285 (391)
T ss_dssp SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 332 22332221111111 1223345567777777666543 6789999999999999999999999999999999866
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+++..+-. +.| ...|.|||+++++|+||.
T Consensus 286 ~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 286 QEERLSRYQQFKDF-QRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHHHHHhcC-CCcEEEECChhhcCCCcc
Confidence 6666554444 455 568999999999999994
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=1.3e-25 Score=237.14 Aligned_cols=272 Identities=17% Similarity=0.225 Sum_probs=185.4
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|+|..+...+++| + |+.+.||.|||+++.+|++ ..+ .+..|.|++|+..|+.+-++++..+..+.++.
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML-TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH-HHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCee
Confidence 5899999999999876 4 9999999999999999997 444 46789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+....++... +.....++|+++|++.| ++.++.. ..... .++++||||||.++-+..
T Consensus 106 ~~~~~~~~~~--~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~---~~~~iIiDEah~~~~~~~----------- 162 (395)
T 3pey_A 106 SQLIVPDSFE--KNKQINAQVIVGTPGTV-LDLMRRK------LMQLQ---KIKIFVLDEADNMLDQQG----------- 162 (395)
T ss_dssp EEEESTTSSC--TTSCBCCSEEEECHHHH-HHHHHTT------CBCCT---TCCEEEEETHHHHHHSTT-----------
T ss_pred EEEEecCchh--hhccCCCCEEEEcHHHH-HHHHHcC------Ccccc---cCCEEEEEChhhhcCccc-----------
Confidence 9988876432 22345789999999887 3444321 12234 799999999999863221
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
....+..+...+.
T Consensus 163 ----~~~~~~~~~~~~~--------------------------------------------------------------- 175 (395)
T 3pey_A 163 ----LGDQCIRVKRFLP--------------------------------------------------------------- 175 (395)
T ss_dssp ----HHHHHHHHHHTSC---------------------------------------------------------------
T ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Confidence 0111111111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
.-.++.+||+|......++.+.+..+.
T Consensus 176 -----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 176 -----------------------------------------------------KDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp -----------------------------------------------------TTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred -----------------------------------------------------CCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 001355777777665455444333322
Q ss_pred EEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 314 IEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~---~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
..+...............+ .....|...+...+ .. ..+.++||||++++.++.+++.|++.|+++..+|+++...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY-GL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQ 280 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH-TT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred eEEEccccccccccccEEEEEcCchHHHHHHHHHHH-Hh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHH
Confidence 2222211111111111111 13445555444333 32 3567999999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++..+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 281 ERDRLIDDFREG-RSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHHHHTT-SCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhcCCCcc
Confidence 66655544 455 567999999999999994
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=5.9e-26 Score=242.59 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=180.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+++|..++..+++|+ |+.+.||+|||+++.+|++ ..+ .+..+.|++|+..||.+-++++..+...+|+.++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL-QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHH-HHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999999887 9999999999999999997 444 5678999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHh---ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 76 LIQRGMIPEERRS---NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 76 ~i~~~~~~~~r~~---aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
...++.+...... .-.++|+|+|++.| ++.|... ....+ .+.++||||||.++ +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~---------- 199 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRV-FDMLNRR------YLSPK---YIKMFVLDEADEML-SRG---------- 199 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHH-HHHHHHT------SSCST---TCCEEEECSHHHHH-HTT----------
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccccc---cCcEEEEECHHHhh-ccC----------
Confidence 9998877443322 25679999999887 4554332 12233 78999999999985 321
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+...+..+...+.+ .
T Consensus 200 -----~~~~~~~~~~~~~~---------~--------------------------------------------------- 214 (414)
T 3eiq_A 200 -----FKDQIYDIFQKLNS---------N--------------------------------------------------- 214 (414)
T ss_dssp -----THHHHHHHHTTSCT---------T---------------------------------------------------
T ss_pred -----cHHHHHHHHHhCCC---------C---------------------------------------------------
Confidence 11112121111110 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.++.+||+|......++.+.|-.+
T Consensus 215 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 238 (414)
T 3eiq_A 215 --------------------------------------------------------TQVVLLSATMPSDVLEVTKKFMRD 238 (414)
T ss_dssp --------------------------------------------------------CEEEEECSCCCHHHHHHHTTTCSS
T ss_pred --------------------------------------------------------CeEEEEEEecCHHHHHHHHHHcCC
Confidence 134566777665555444433322
Q ss_pred eEEeCC-CCCcccccCCC-eEEe-ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 VIEVPT-NLPNIRVDLPI-QSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 vv~IPt-~~p~~R~d~~d-~i~~-t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
...+.. ........... .+.. ....|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+.+..+|+++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~ 316 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET--LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQ 316 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS--SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHH
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh--CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCH
Confidence 222211 11111111111 1112 223356655544433 255689999999999999999999999999999998655
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++..+-. +.| ...|.|||+++++|+||.
T Consensus 317 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 317 KERDVIMREFRSG-SSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHHHSCC----CEEECSSCC--CCGG
T ss_pred HHHHHHHHHHHcC-CCcEEEECCccccCCCcc
Confidence 555544444 344 457999999999999994
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=2.8e-25 Score=249.46 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=186.3
Q ss_pred CCchhHHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHHHHhhh-
Q 005155 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHRF- 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhVvT~NdyLA~RDae~~~~~y~~- 69 (711)
.|+|+|..++..++ +|+ |+.+.||+|||++|++|++-..+.++ .|.|++|+..||.|.++.+..++..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 58999999999888 455 99999999999999999985555544 7999999999999999999998653
Q ss_pred ---cCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 70 ---LGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 70 ---LGLtv~~i~~~~~~~~r~---~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
-++.+..+.++.+..... ....+||+++|++.| +++|... .....+ .+.++||||||.|+ |.++
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~~f 243 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 243 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHH-HHHHHhc-----cccccc---cceEEEEeCHHHHh-ccch
Confidence 356788888887643222 245789999999987 5555432 112344 79999999999986 4322
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
. +.+..+...+...... ....
T Consensus 244 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 264 (563)
T 3i5x_A 244 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 264 (563)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHhhhhcccc--CccC------------------------------------------
Confidence 2 2233332222110000 0000
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
.++.+||+|+.....
T Consensus 265 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 279 (563)
T 3i5x_A 265 -----------------------------------------------------------------IKTLLFSATLDDKVQ 279 (563)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEEccCCHHHH
Confidence 124566666665544
Q ss_pred HHHHHc-CCC-eEEe---CCCCCcccccCCCeE-E-eChhHHHHHHHHHHHHh---hhcCCcEEEEecchhhHHHHHHHH
Q 005155 304 EFLKMF-QMP-VIEV---PTNLPNIRVDLPIQS-F-ATARGKWEYARQEVESM---FRLGRPVLVGSTSVENSEYLSDLL 373 (711)
Q Consensus 304 Ef~~iY-~l~-vv~I---Pt~~p~~R~d~~d~i-~-~t~~~K~~aIi~ei~~~---~~~grPVLV~t~Si~~SE~Ls~~L 373 (711)
++...+ +.+ .+.+ +...+.........+ . .....+....+..+... ...+.++||||+|...++.++..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 280 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 443322 222 1222 112222111111111 1 12234444444444333 256789999999999999999999
Q ss_pred HHC---CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 374 ~~~---gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++. |+++..+|+++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 360 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip 409 (563)
T 3i5x_A 360 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 409 (563)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEcchhhcCCCcc
Confidence 987 9999999998777777655544 556 567999999999999995
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.8e-25 Score=231.51 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=102.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++- .|..+.|++|+..|+.+-++++..+...++++++.+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 58999999999998877 99999999999999999863 38899999999999999999999999999999999999
Q ss_pred CCCHHHH-HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r-~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.... .....++|+++|++.| .+++.. . ....+ .++++|+||||.++
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~iViDEah~~~ 142 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRL-LDLWSK----G--VIDLS---SFEIVIIDEADLMF 142 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHH-HHHHHT----T--SCCGG---GCSEEEEESHHHHH
T ss_pred CcchHHHHhhcCCCCEEEECHHHH-HHHHHc----C--Ccchh---hCcEEEEEChHHhh
Confidence 8875443 3345689999999876 233222 1 11234 78999999999985
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=8.2e-25 Score=248.08 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=184.8
Q ss_pred CCchhHHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHHHHhh--
Q 005155 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHR-- 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhVvT~NdyLA~RDae~~~~~y~-- 68 (711)
.|+|+|..++..++ +|+ |+++.||+|||++|++|++-..+.++ .|.||+|+..||.|.++++..++.
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~ 122 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 122 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc
Confidence 48999999999888 555 99999999999999999986555543 799999999999999999999874
Q ss_pred --hcCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 69 --FLGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 69 --~LGLtv~~i~~~~~~~~r~---~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.-.+.+..+.++.+..... ....+||+++|++.| .+.|... .....+ .+.++||||||.|+ |.++
T Consensus 123 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~gf 192 (579)
T 3sqw_A 123 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 192 (579)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred ccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH-HHHHHhc-----cccccc---cCCEEEEEChHHhh-cCCC
Confidence 3457788888887643322 235789999999987 4555432 122345 79999999999986 4322
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
. +.+..+...+...... ....
T Consensus 193 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 213 (579)
T 3sqw_A 193 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 213 (579)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHHhhhhhcc--cccC------------------------------------------
Confidence 1 2222332222110000 0000
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
.++.+||+|+.....
T Consensus 214 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 228 (579)
T 3sqw_A 214 -----------------------------------------------------------------IKTLLFSATLDDKVQ 228 (579)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEeccCChHHH
Confidence 124456666655444
Q ss_pred HHHHHc-CCCe-EEeC---CCCCcccccCCC-eEEe-ChhHHHHHHHHHHHHhh---hcCCcEEEEecchhhHHHHHHHH
Q 005155 304 EFLKMF-QMPV-IEVP---TNLPNIRVDLPI-QSFA-TARGKWEYARQEVESMF---RLGRPVLVGSTSVENSEYLSDLL 373 (711)
Q Consensus 304 Ef~~iY-~l~v-v~IP---t~~p~~R~d~~d-~i~~-t~~~K~~aIi~ei~~~~---~~grPVLV~t~Si~~SE~Ls~~L 373 (711)
++...+ +.+. +.+. ...+........ .+.. ....+....++.+.... ..+.++||||+|+..++.+++.|
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 229 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 433322 2221 2221 111211111111 1122 22333334444443322 45789999999999999999999
Q ss_pred HHC---CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 374 ~~~---gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++. |+++..+|+++.+.+++..+-. +.| ...|.|||++++||+||.
T Consensus 309 ~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLVaT~~~~~GiDip 358 (579)
T 3sqw_A 309 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 358 (579)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEEEcchhhcCCCcc
Confidence 987 9999999998777777655544 556 567999999999999994
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=3.1e-25 Score=239.65 Aligned_cols=124 Identities=21% Similarity=0.194 Sum_probs=102.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|+....-.|..|.|++|+..||.+.++.+..+.. +|++++.+.+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g 99 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYS 99 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEEC
Confidence 58999999999999987 99999999999988888764444788999999999999999999999888 9999999999
Q ss_pred CCCHHHHH-----hccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERR-----SNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~-----~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+..++. ...+ +||+++|++.| .+.+. . .... .+.++||||||.++
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l-~~~l~----~----~~~~---~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 100 SMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNRE----K----LSQK---RFDFVFVDDVDAVL 152 (414)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEEEHHHH-HHCHH----H----HTTC---CCSEEEESCHHHHH
T ss_pred CCChhhHHHHHHHhhcCCCCEEEECHHHH-HHHHH----H----hccc---cccEEEEeChHhhh
Confidence 98874432 2233 89999999877 23332 1 2233 79999999999875
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.93 E-value=2.2e-24 Score=229.82 Aligned_cols=274 Identities=16% Similarity=0.184 Sum_probs=182.3
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
.|+|+|..+...+++| + |+.+.||.|||++|.+|++ ..+. +..|.|++|+..||.+-++++..+...+ ++
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML-SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHH-HHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 5899999999999876 4 9999999999999999997 4442 2379999999999999999999998876 78
Q ss_pred eEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 73 SVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 73 tv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
.++...++.... +.....++|+++|++.| .++++. . ...... .++++||||||.++-+...
T Consensus 126 ~~~~~~~~~~~~-~~~~~~~~ivv~T~~~l-~~~~~~----~-~~~~~~---~~~~iViDEah~~~~~~~~--------- 186 (412)
T 3fht_A 126 KLAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMIATQGH--------- 186 (412)
T ss_dssp CEEEECTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT----S-CSSCGG---GCCEEEEETHHHHHSTTTT---------
T ss_pred eEEEeecCcchh-hhhcCCCCEEEECchHH-HHHHHh----c-CCcChh---hCcEEEEeCHHHHhhcCCc---------
Confidence 898887765422 22345679999999877 333322 1 112233 7999999999998632211
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
......+...+.. ..
T Consensus 187 ------~~~~~~~~~~~~~---------~~-------------------------------------------------- 201 (412)
T 3fht_A 187 ------QDQSIRIQRMLPR---------NC-------------------------------------------------- 201 (412)
T ss_dssp ------HHHHHHHHHTSCT---------TC--------------------------------------------------
T ss_pred ------HHHHHHHHhhCCC---------Cc--------------------------------------------------
Confidence 1112222222211 11
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
++.+||+|......++...+-.+
T Consensus 202 ---------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 202 ---------------------------------------------------------QMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp ---------------------------------------------------------EEEEEESCCCHHHHHHHHHHSSS
T ss_pred ---------------------------------------------------------eEEEEEeecCHHHHHHHHHhcCC
Confidence 23455555554443333322222
Q ss_pred eEEeCCCCCc-ccccC-CCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 VIEVPTNLPN-IRVDL-PIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 vv~IPt~~p~-~R~d~-~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
...+...... ..... ...+. .....|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 302 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCH
Confidence 1111111100 00000 01111 2345677776666554 356799999999999999999999999999999998766
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++..+-. +.| ...|.|||++++||+||.
T Consensus 303 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 303 EQRAAVIERFREG-KEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHCC-CCcEEEEcCccccCCCcc
Confidence 666654444 555 567999999999999994
No 19
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=8.4e-25 Score=250.37 Aligned_cols=270 Identities=20% Similarity=0.206 Sum_probs=186.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..++..+++|+ |+.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+..+ |++++.+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeC
Confidence 47899999999999988 99999999999999999973 4568999999999999888877764 999999999
Q ss_pred CCCHHHHHh--------ccCCCeEEECCCchhh-HHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcC--CCceec
Q 005155 80 GMIPEERRS--------NYRCDITYTNNSELGF-DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG--RNPLLI 148 (711)
Q Consensus 80 ~~~~~~r~~--------aY~~DI~YgT~~elgf-DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea--~tPLii 148 (711)
+++..++.. .-.++|+|+|+..|.- ..+.+.+.. ..... .+.++||||||.|+ +.+ +.|
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~---~~~~~---~i~~iViDEAH~is-~~g~dfr~--- 186 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK---AYEAR---RFTRIAVDEVHCCS-QWGHDFRP--- 186 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---HHHTT---CEEEEEEETGGGGS-TTCTTCCG---
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---hhhcc---CCcEEEEECccccc-ccccccHH---
Confidence 988766543 2367999999987732 123333321 12234 78999999999985 221 111
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
.|..+. .+ ...+. +
T Consensus 187 ---------~~~~l~-----------------------------------------------------~l--~~~~~-~- 200 (591)
T 2v1x_A 187 ---------DYKALG-----------------------------------------------------IL--KRQFP-N- 200 (591)
T ss_dssp ---------GGGGGG-----------------------------------------------------HH--HHHCT-T-
T ss_pred ---------HHHHHH-----------------------------------------------------HH--HHhCC-C-
Confidence 000000 00 00000 0
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH-HHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLK 307 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~-~Ef~~ 307 (711)
..+.+||+|+.... +.+.+
T Consensus 201 ------------------------------------------------------------~~ii~lSAT~~~~v~~~i~~ 220 (591)
T 2v1x_A 201 ------------------------------------------------------------ASLIGLTATATNHVLTDAQK 220 (591)
T ss_dssp ------------------------------------------------------------SEEEEEESSCCHHHHHHHHH
T ss_pred ------------------------------------------------------------CcEEEEecCCCHHHHHHHHH
Confidence 12557888887643 44555
Q ss_pred HcCCC--eEE-eCCCCCcccccCCCeEEe---ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 308 MFQMP--VIE-VPTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 308 iY~l~--vv~-IPt~~p~~R~d~~d~i~~---t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
..+++ ++. -+.++|..+. .+.. ...+++..+++.+... ..+.++||||.|.+.++.+++.|.+.|+.+.
T Consensus 221 ~l~~~~~~~~~~~~~r~nl~~----~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~ 295 (591)
T 2v1x_A 221 ILCIEKCFTFTASFNRPNLYY----EVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG 295 (591)
T ss_dssp HTTCCSCEEEECCCCCTTEEE----EEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred HhCCCCcEEEecCCCCcccEE----EEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 56554 222 2223333221 1111 1344555666555433 2678999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+++...+|+..+-. ..| ...|.|||+++|+|+|+.
T Consensus 296 ~~h~~l~~~~R~~~~~~F~~g-~~~VlVAT~a~~~GID~p 334 (591)
T 2v1x_A 296 AYHANLEPEDKTTVHRKWSAN-EIQVVVATVAFGMGIDKP 334 (591)
T ss_dssp EECTTSCHHHHHHHHHHHHTT-SSSEEEECTTSCTTCCCS
T ss_pred EecCCCCHHHHHHHHHHHHcC-CCeEEEEechhhcCCCcc
Confidence 99998777666655544 455 568999999999999994
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=1.5e-24 Score=244.45 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=186.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|.-++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|+..|+.+..+.+.. +|+.+..+.+
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~----~gi~~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQA----NGVAAACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHH----cCCcEEEEeC
Confidence 47899999999999988 99999999999999999973 355689999999999988887765 5999999998
Q ss_pred CCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+..++... -.++|+|+|+..|..+...+.+. .. ++.++||||||.+. +.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-------~~---~~~~vViDEaH~i~-~~g~---------- 156 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-------HW---NPVLLAVDEAHCIS-QWGH---------- 156 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-------TS---CEEEEEESSGGGGC-TTSS----------
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-------hC---CCCEEEEeCccccC-cCCC----------
Confidence 8876554332 24799999998874332222221 23 78999999999984 2110
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+|. +. ...+.. + ...+.
T Consensus 157 --------------------~fr-----------------------------~~---~~~l~~-l--~~~~~-------- 173 (523)
T 1oyw_A 157 --------------------DFR-----------------------------PE---YAALGQ-L--RQRFP-------- 173 (523)
T ss_dssp --------------------CCC-----------------------------HH---HHGGGG-H--HHHCT--------
T ss_pred --------------------ccH-----------------------------HH---HHHHHH-H--HHhCC--------
Confidence 000 00 000000 0 00000
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~ 312 (711)
-..+.+||+|+... .+++.+..++.
T Consensus 174 ------------------------------------------------------~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 174 ------------------------------------------------------TLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp ------------------------------------------------------TSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred ------------------------------------------------------CCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 01356889999765 35677766653
Q ss_pred --eEEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 --VIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 --vv~IPt-~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
.+.+++ ++|..+ ........+...+++.+.. ..+.++||||+|.+.++.+++.|.+.|+++..+|+++..
T Consensus 200 ~~~~~~~~~~r~~l~-----~~v~~~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~ 272 (523)
T 1oyw_A 200 DPLIQISSFDRPNIR-----YMLMEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLEN 272 (523)
T ss_dssp SCEEEECCCCCTTEE-----EEEEECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCeEEeCCCCCCceE-----EEEEeCCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCH
Confidence 344433 333322 1122335567777777765 378899999999999999999999999999999998776
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||+++|+|+|+.
T Consensus 273 ~~R~~~~~~f~~g-~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 273 NVRADVQEKFQRD-DLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHHHcC-CCeEEEEechhhCCCCcc
Confidence 666655544 455 578999999999999994
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.92 E-value=4.4e-25 Score=233.95 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=103.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++ ..+ .+..|.|++|+..|+.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 58999999999998876 9999999999999999997 444 4668999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHh-ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~-aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+.++.+..+... .-.++|+++|++.| ++.+.. . ..... .+.++||||||.++
T Consensus 122 ~~~g~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQR----R--RFRTD---KIKMFILDEADEML 175 (394)
T ss_dssp EECSSCCHHHHHHHHHHCSEEEECHHHH-HHHHHT----T--SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCCchHHHHhhcCCCCEEEECHHHH-HHHHHh----C--Ccchh---hCcEEEEEChHHhh
Confidence 9999887544332 23789999999876 333322 1 12233 78999999999975
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.5e-23 Score=224.80 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..+...+.+|. |+.+.||.|||+++.+|+..... .+..|.||+|+..|+.+-++++..++...+.+++.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g 88 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG 88 (494)
T ss_dssp CCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS
T ss_pred CccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC
Confidence 58999999999888766 99999999999999999863222 58899999999999998777766655333349999999
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+...+...+ .++|+++|++.|.-+ +... ..... .++++||||||.+.
T Consensus 89 ~~~~~~~~~~~~~~~ivv~T~~~l~~~-----~~~~--~~~~~---~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 89 EKSPEERSKAWARAKVIVATPQTIEND-----LLAG--RISLE---DVSLIVFDEAHRAV 138 (494)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHH-----HHTT--SCCTT---SCSEEEEETGGGCS
T ss_pred CcchhhhhhhccCCCEEEecHHHHHHH-----HhcC--Ccchh---hceEEEEECCcccC
Confidence 98876655443 689999999776322 2211 12233 78999999999975
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.92 E-value=3.4e-23 Score=229.58 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|+|+|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 469999999999998876 999999999999999999744343 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+.++.+... +.....+||+++|++.| .+.+. .. .. ... .++++||||||.+.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~----~~--~~~~~~---~~~~vViDEah~~~ 143 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 143 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHH-HHHHH----SS--SCCCST---TCSEEEEETGGGCS
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHH-HHHHH----hC--cccccc---cCCEEEEECCcccC
Confidence 999999875433 22334689999999886 33332 21 11 233 78999999999985
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=238.90 Aligned_cols=277 Identities=17% Similarity=0.213 Sum_probs=111.6
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~G~---~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
+|+|+|..+...++.| + |+.+.||+|||++|.+|++-....+. .|.|++|+..||.+.++++..+..++ ++.
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 193 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCce
Confidence 6899999999999986 4 99999999999999999973333333 79999999999999999999998875 788
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+++..++... .+.....++|++||++.+ .++|.. . .....+ .+.++||||+|.++-+.+
T Consensus 194 ~~~~~~~~~~-~~~~~~~~~Ivv~Tp~~l-~~~l~~----~-~~~~~~---~~~~iViDEah~~~~~~~----------- 252 (479)
T 3fmp_B 194 LAYAVRGNKL-ERGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMIATQG----------- 252 (479)
T ss_dssp EEEESTTCCC-CTTCCCCCSEEEECHHHH-HHHHTT----S-CCCCGG---GCCEEEECCHHHHHTSTT-----------
T ss_pred EEEEeCCccc-cccccCCCCEEEECchHH-HHHHHh----c-CCcCcc---cCCEEEEECHHHHhhcCC-----------
Confidence 8887776432 123356789999999887 444422 1 112234 799999999999863221
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.......+...+.. ..++. +++++.+ ..+... +..++ .+..++.
T Consensus 253 ----~~~~~~~i~~~~~~---------~~~~i-----------------~~SAT~~--~~~~~~--~~~~~-~~~~~i~- 296 (479)
T 3fmp_B 253 ----HQDQSIRIQRMLPR---------NCQML-----------------LFSATFE--DSVWKF--AQKVV-PDPNVIK- 296 (479)
T ss_dssp ----HHHHHHHHHTTSCT---------TSEEE-----------------EEESCCC--HHHHHH--HHHHS-SSEEEEE-
T ss_pred ----cHHHHHHHHhhCCc---------cceEE-----------------EEeCCCC--HHHHHH--HHHHc-CCCeEEe-
Confidence 11223333333321 23333 3444431 111111 12222 1111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
+.. +..+...+
T Consensus 297 ------~~~-----------------------------~~~~~~~~---------------------------------- 307 (479)
T 3fmp_B 297 ------LKR-----------------------------EEETLDTI---------------------------------- 307 (479)
T ss_dssp ------EC------------------------------------------------------------------------
T ss_pred ------ccc-----------------------------cccCcCCc----------------------------------
Confidence 000 00000000
Q ss_pred EEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 314 IEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
....++ .....|+..+...+.. ..+.++||||+|+..++.++..|...|+.+.++|+++...+|
T Consensus 308 -------------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 372 (479)
T 3fmp_B 308 -------------KQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 372 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------eEEEEEeCCHHHHHHHHHHHHhh--ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHH
Confidence 000111 1123455555555443 245689999999999999999999999999999998666666
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+-. +.| ...|.|||++++||+||.
T Consensus 373 ~~~~~~f~~g-~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 373 AAVIERFREG-KEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHcC-CCcEEEEccccccCCccc
Confidence 544433 444 457999999999999995
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.91 E-value=1.6e-22 Score=223.37 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 479999999999998877 999999999999999999744443 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+.++.+...+ ...-.+||+++|++.| .+.+.. .. ..... .++++||||||.++
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~~-~~~~~---~~~~vViDEah~~~ 140 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQIL-VNNLNN----GA-IPSLS---VFTLMIFDECHNTS 140 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHH-HHHHHT----SS-SCCGG---GCSEEEETTGGGCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHH-HHHHhc----Cc-ccccc---cCCEEEEECccccC
Confidence 9999998754332 2334589999999887 333322 11 00233 78999999999985
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.7e-23 Score=234.30 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=167.1
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHH-c---CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNAL-T---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL-~---G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|..++..+++| + |+.+.||+|||+++++|++ ..| . +..|.|++|+..|+.+-++++..++...++.
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il-~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML-SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHH-HHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHH-HHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 3789999999999887 4 9999999999999999997 444 3 3479999999999999999999999988888
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+....++.... .....++|+++|++.| ++++... ....+ .++++||||+|.++-+..
T Consensus 220 ~~~~~~~~~~~--~~~~~~~Ivv~T~~~l-~~~l~~~------~~~~~---~~~lIIiDEaH~~~~~~~----------- 276 (508)
T 3fho_A 220 TAFGIKDSVPK--GAKIDAQIVIGTPGTV-MDLMKRR------QLDAR---DIKVFVLDEADNMLDQQG----------- 276 (508)
T ss_dssp EEC------------CCCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEECCHHHHTTC-------------
T ss_pred EEEEeCCcccc--cccCCCCEEEECHHHH-HHHHHcC------Ccccc---CCCEEEEechhhhcccCC-----------
Confidence 87766554332 2234789999999887 4444321 11233 799999999999852111
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.......+...+..
T Consensus 277 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 290 (508)
T 3fho_A 277 ----LGDQSMRIKHLLPR-------------------------------------------------------------- 290 (508)
T ss_dssp ----CHHHHHHHHHHSCT--------------------------------------------------------------
T ss_pred ----cHHHHHHHHHhCCc--------------------------------------------------------------
Confidence 01111111111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
-.++.|||+|.....+++...|..+.
T Consensus 291 ------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~ 316 (508)
T 3fho_A 291 ------------------------------------------------------NTQIVLFSATFSERVEKYAERFAPNA 316 (508)
T ss_dssp ------------------------------------------------------TCEEEEEESCCSTHHHHHHHHHSTTC
T ss_pred ------------------------------------------------------CCeEEEEeCCCCHHHHHHHHHhcCCC
Confidence 01345677777665555555554443
Q ss_pred EEeCCCCCc-ccccCCCeEE--eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 314 IEVPTNLPN-IRVDLPIQSF--ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 314 v~IPt~~p~-~R~d~~d~i~--~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
..+...... ........+. .....|...+.+.+.. ..+.++||||+++..++.++..|.+.|+.+..+|+++...
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL--LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGA 394 (508)
T ss_dssp EEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----C
T ss_pred eEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 332221111 1111111111 2344555555544433 3567999999999999999999999999999999975554
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++..+-. +.| ...|.|||+|+++|+||.
T Consensus 395 ~R~~il~~f~~g-~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 395 QRDAIMDSFRVG-TSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp TTGGGTHHHHSS-SCCCCEECC-----CCCT
T ss_pred HHHHHHHHHHCC-CCeEEEeCChhhcCCCcc
Confidence 55433333 556 457999999999999994
No 27
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=4e-23 Score=237.54 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC------CCEEEEecCHHHHHHH-HHHHHHHhhhcC
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRD-AEWMERVHRFLG 71 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G------~~VhVvT~NdyLA~RD-ae~~~~~y~~LG 71 (711)
+.|+|.|..++..+++|+ |+.+.||.|||+++.+|+......+ ..|.||+|+..|+.+- .+++..++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 468999999999999876 9999999999999999996433332 7899999999999999 8888887765 5
Q ss_pred CeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcc----hhhhhcCCCCCccEEEeechhhh
Q 005155 72 LSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAAN----SEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 72 Ltv~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~----~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++++.+.++.+..+ +...-.+||+|+|++.| .+.+... ....... .+.++||||||.+
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L-----~~~l~~~~~~~~~~~~~~---~~~lvViDEaH~~ 148 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-----ENSLLNLENGEDAGVQLS---DFSLIIIDECHHT 148 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHH-----HHHTC--------CCCGG---GCSEEEEESGGGC
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHH-----HHHHhccccccccceecc---cCcEEEEECcccc
Confidence 89999998865332 33345789999999887 2322211 1112233 7899999999987
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.89 E-value=2.1e-21 Score=228.48 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=101.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.||+|+..|+.+-.+.+..++..+|+++
T Consensus 248 ~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 58999999999998877 999999999999999999744444 77899999999999999999999999999999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+... +...-.+||+++|++.| .+.++ .. .. ... .++++||||||.+.
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~----~~--~~~~~~---~~~~iViDEaH~~~ 384 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 384 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHH-HHHHH----SS--SCCCGG---GCSEEEETTGGGCS
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHH-HHHHH----hc--cccccc---cCCEEEEECccccC
Confidence 99999876443 23345789999999887 33332 21 11 233 78999999999975
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=4.6e-22 Score=234.21 Aligned_cols=262 Identities=15% Similarity=0.219 Sum_probs=179.1
Q ss_pred CCchhHHHHHHHHhC--------CCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHD--------GSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~--------G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|..++..+.+ ..|++..||+|||++|.+|++.....|.+|.|++|+..||.|-++.+..++..+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~ 447 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIH 447 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCce
Confidence 578999999887765 349999999999999999998555679999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
|++++++++..+++..+ .+||++||++.| .+. .... ++.++||||+|.+-.+. +
T Consensus 448 v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------~~~~---~l~lVVIDEaHr~g~~q-r---- 507 (780)
T 1gm5_A 448 VALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QED-------VHFK---NLGLVIIDEQHRFGVKQ-R---- 507 (780)
T ss_dssp EEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHC-------CCCS---CCCEEEEESCCCC----------
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hhh-------hhcc---CCceEEecccchhhHHH-H----
Confidence 99999999877765433 489999999754 332 2234 78999999999852110 0
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.. +.. . ..
T Consensus 508 -----------------------------------~~------------------l~~-~-----------------~~- 515 (780)
T 1gm5_A 508 -----------------------------------EA------------------LMN-K-----------------GK- 515 (780)
T ss_dssp -----------------------------------CC------------------CCS-S-----------------SS-
T ss_pred -----------------------------------HH------------------HHH-h-----------------CC-
Confidence 00 000 0 00
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
-.++.+||+|.....-.+.
T Consensus 516 ------------------------------------------------------------~~~vL~mSATp~p~tl~~~- 534 (780)
T 1gm5_A 516 ------------------------------------------------------------MVDTLVMSATPIPRSMALA- 534 (780)
T ss_dssp ------------------------------------------------------------CCCEEEEESSCCCHHHHHH-
T ss_pred ------------------------------------------------------------CCCEEEEeCCCCHHHHHHH-
Confidence 0124566777644332222
Q ss_pred HcC-CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhh--------HHHHHHHHHH---
Q 005155 308 MFQ-MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN--------SEYLSDLLKQ--- 375 (711)
Q Consensus 308 iY~-l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~--------SE~Ls~~L~~--- 375 (711)
.|+ +++..|... |..|. |...+.....+...+.+.+.+....|+.++|||++++. ++.+++.|++
T Consensus 535 ~~g~~~~s~i~~~-p~~r~--~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~ 611 (780)
T 1gm5_A 535 FYGDLDVTVIDEM-PPGRK--EVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 611 (780)
T ss_dssp HTCCSSCEEECCC-CSSCC--CCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC
T ss_pred HhCCcceeeeecc-CCCCc--ceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc
Confidence 233 344443211 11111 11122222234455667777666789999999998765 4667788887
Q ss_pred CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 376 QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 376 ~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.++.+..+|+++...++++.+-+ +.| ...|.|||+++++|+||.
T Consensus 612 ~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 612 PEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp ---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBCCCSSCCCSCSCCT
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEECCCCCccccCC
Confidence 47888899998777778766665 445 568999999999999994
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.88 E-value=8.8e-21 Score=231.68 Aligned_cols=261 Identities=17% Similarity=0.124 Sum_probs=180.3
Q ss_pred CCchhHHHHHHHHhC----CC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHD----GS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|.|..++..+++ |+ |+++.||.|||++|++|++.....|++|.|++|+..||.|-++.+...+..++++
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~ 682 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 682 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCe
Confidence 478999999997765 54 9999999999999999998777789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
++.+.+..+..+++.. -.+||++||+.- |... .... .+.++||||+|.+-.
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~l-----l~~~-------~~~~---~l~lvIiDEaH~~g~-------- 739 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL-----LQSD-------VKFK---DLGLLIVDEEHRFGV-------- 739 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH-----HHSC-------CCCS---SEEEEEEESGGGSCH--------
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH-----HhCC-------cccc---ccceEEEechHhcCh--------
Confidence 9999888776554322 258999999843 3321 2234 899999999999410
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.....+..+.. .
T Consensus 740 -------------~~~~~l~~l~~---------~---------------------------------------------- 751 (1151)
T 2eyq_A 740 -------------RHKERIKAMRA---------N---------------------------------------------- 751 (1151)
T ss_dssp -------------HHHHHHHHHHT---------T----------------------------------------------
T ss_pred -------------HHHHHHHHhcC---------C----------------------------------------------
Confidence 00111111110 0
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..+.+||+|.....-.+.
T Consensus 752 -------------------------------------------------------------~~vl~lSATp~p~~l~~~- 769 (1151)
T 2eyq_A 752 -------------------------------------------------------------VDILTLTATPIPRTLNMA- 769 (1151)
T ss_dssp -------------------------------------------------------------SEEEEEESSCCCHHHHHH-
T ss_pred -------------------------------------------------------------CCEEEEcCCCChhhHHHH-
Confidence 013455555543222211
Q ss_pred HcCC-CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEe
Q 005155 308 MFQM-PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (711)
Q Consensus 308 iY~l-~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLn 384 (711)
.+++ +...|.+ .|..|......+..... ..+.+.+.+....|.+|+|||++++.++.+++.|++. ++.+.++|
T Consensus 770 ~~~~~~~~~i~~-~~~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lh 845 (1151)
T 2eyq_A 770 MSGMRDLSIIAT-PPARRLAVKTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 845 (1151)
T ss_dssp HTTTSEEEECCC-CCCBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECC
T ss_pred HhcCCCceEEec-CCCCccccEEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 2222 2222222 12223222222222221 2334444455567899999999999999999999998 88899999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++...+++..+.. ..| ...|.|||+++++|+||.
T Consensus 846 g~~~~~eR~~il~~F~~g-~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 846 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp SSCCHHHHHHHHHHHHTT-SCCEEEESSTTGGGSCCT
T ss_pred CCCCHHHHHHHHHHHHcC-CCcEEEECCcceeeeccc
Confidence 98777777766655 455 568999999999999995
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.87 E-value=2.3e-21 Score=224.76 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=99.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++-....|..+.+++|+..||.+-++.+. -+..+|++|+..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HHHhcCCEEEEEeC
Confidence 57899999999988877 9999999999999999997544568899999999999999999885 34556999999999
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+....++.. -.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l-~~~l~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKA-DSLIRN----R--ASWIK---AVSCLVVDEIHLLD 151 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHH-HHHHHT----T--CSGGG---GCCEEEETTGGGGG
T ss_pred CCCcchhhc-cCCCEEEECHHHH-HHHHHc----C--hhHHh---hcCEEEEeeeeecC
Confidence 876443322 3789999999886 223332 1 12244 78999999999874
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.87 E-value=1.3e-20 Score=218.51 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|+|+|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..+.+++|+..||.+-++.+. -+..+|++|+..
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~-~~~~~g~~v~~~ 108 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG-GGGGGTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH-HhhcCCCEEEEE
Confidence 578999999998 66666 99999999999999999974434 58899999999999999999885 445579999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+|+....++.. -.++|+|+|++.+ ...++. . ...++ ++.++||||||.+.
T Consensus 109 ~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 109 SGDYDTDDAWL-KNYDIIITTYEKL-DSLWRH----R--PEWLN---EVNYFVLDELHYLN 158 (715)
T ss_dssp CSCSSSCCGGG-GGCSEEEECHHHH-HHHHHH----C--CGGGG---GEEEEEECSGGGGG
T ss_pred eCCCCCchhhc-CCCCEEEEcHHHH-HHHHhC----C--hhHhh---ccCEEEEechhhcC
Confidence 99876544433 3789999999886 223332 1 12244 78999999999964
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.87 E-value=6.2e-21 Score=228.72 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||+++.+|+.-.... +..|.||+|+..|+.+-++.+..++..+|+++
T Consensus 248 ~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (936)
T 4a2w_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (936)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 68999999999998887 999999999999999998633233 77899999999999999999999999999999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+...+ ...-.+||+++|++.| .+.+. ... ..... .++++||||||.+.
T Consensus 328 ~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L-~~~l~----~~~-~~~l~---~~~liViDEaH~~~ 384 (936)
T 4a2w_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DGT-LTSLS---IFTLMIFDECHNTT 384 (936)
T ss_dssp EEECCC-----CCHHHHHHCSEEEECHHHH-HHHHH----SSS-CCCGG---GCSEEEEETGGGCS
T ss_pred EEEECCcchhhHHHHhccCCCEEEecHHHH-HHHHH----cCc-ccccc---CCCEEEEECccccC
Confidence 999998764432 2234689999999887 33332 211 11234 78999999999975
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=4.6e-21 Score=220.37 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-....+ ..+.|++|+..|+.+-.+.+..++..+|+++
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 68999999999998876 9999999999999999997333332 6799999999999999999999998899999
Q ss_pred EEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+.. .+...-.+||+|+|++.| .+.|. .. .. ... .+.++||||||.+.
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L-~~~l~----~~--~~~~l~---~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQIL-VNNLK----KG--TIPSLS---IFTLMIFDECHNTS 149 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHH-HHHHH----TT--SSCCGG---GCSEEEEETGGGCS
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHH-HHHHh----cC--cccccc---cccEEEEeCCCccc
Confidence 9999986532 222334689999999887 33332 21 11 233 78999999999985
No 35
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.86 E-value=1.3e-21 Score=217.11 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=98.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..++..+.+|+ |+.+.||.|||+++++|+......++ +|.|++|+..|+.+-.+.+..+..+.+++++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 58899999999877654 99999999999999998874333566 8999999999999999999888777778999998
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+..++ ..-.++|+++|++.+. ++ .....+ .+.++||||+|.+.
T Consensus 193 ~~~~~~~~-~~~~~~I~i~T~~~l~----~~------~~~~~~---~~~liIiDE~H~~~ 238 (510)
T 2oca_A 193 GGASKDDK-YKNDAPVVVGTWQTVV----KQ------PKEWFS---QFGMMMNDECHLAT 238 (510)
T ss_dssp GGCCTTGG-GCTTCSEEEEEHHHHT----TS------CGGGGG---GEEEEEEETGGGCC
T ss_pred cCCccccc-cccCCcEEEEeHHHHh----hc------hhhhhh---cCCEEEEECCcCCC
Confidence 88765433 4466899999987541 11 112334 78999999999974
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.85 E-value=6.7e-21 Score=221.47 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=98.3
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|+|+|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..|.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l-~~~g~~v~~~ 101 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-EKIGLRVAMA 101 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG-GGGTCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHH-HhcCCEEEEe
Confidence 588999999997 77777 99999999999999999974444 5889999999999999999998644 4469999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++.+...+. .-.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 102 ~G~~~~~~~~-~~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 102 TGDYDSKDEW-LGKYDIIIATAEKF-DSLLRH----G--SSWIK---DVKILVADEIHLIG 151 (720)
T ss_dssp CSCSSCCCGG-GGGCSEEEECHHHH-HHHHHH----T--CTTGG---GEEEEEEETGGGGG
T ss_pred cCCCCccccc-cCCCCEEEECHHHH-HHHHHc----C--hhhhh---cCCEEEEECCcccC
Confidence 9987654432 33789999999876 222322 1 12234 78999999999874
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=1.3e-19 Score=218.63 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=97.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|.-++..+.+|+ |+.+.||.|||+++.+|+....-.|..+.|++|+..||.+-++.+..++. |++++.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G 116 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITG 116 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeC
Confidence 47889999999999988 99999999999999999875555678899999999999998888877654 899999998
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
+.+. .-.++|+|+|++.| ++.+... ....+ .+.++||||||.++ |..+.
T Consensus 117 ~~~~-----~~~~~IlV~Tpe~L-----~~~l~~~--~~~l~---~l~lvViDEaH~l~-d~~~g 165 (997)
T 4a4z_A 117 DVQI-----NPDANCLIMTTEIL-----RSMLYRG--ADLIR---DVEFVIFDEVHYVN-DQDRG 165 (997)
T ss_dssp SCEE-----CTTSSEEEEEHHHH-----HHHHHHT--CSGGG---GEEEEEECCTTCCC-TTCTT
T ss_pred CCcc-----CCCCCEEEECHHHH-----HHHHHhC--chhhc---CCCEEEEECccccc-ccchH
Confidence 8642 23479999999877 3333222 12344 79999999999875 55443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-19 Score=221.00 Aligned_cols=118 Identities=21% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ |+.+.||+|||++|.+|++.....|..|.|++|+..||.|-+..+..++. .|+++.+
T Consensus 184 ~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltG 259 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 259 (1108)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeC
Confidence 57899999999999988 99999999999999999986556788999999999999998888877665 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++. .-.++|+|+|++.| ++.+.... ..++ .+.++||||||.|+
T Consensus 260 d~~~-----~~~~~IlV~Tpe~L-----~~~L~~~~--~~l~---~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 260 DITI-----NPDAGCLVMTTEIL-----RSMLYRGS--EVMR---EVAWVIFDEVHYMR 303 (1108)
T ss_dssp SCBC-----CCSCSEEEEEHHHH-----HHHHHHCS--SHHH---HEEEEEEETGGGTT
T ss_pred cccc-----CCCCCEEEeChHHH-----HHHHHcCc--cccc---cCCEEEEhhhhhcc
Confidence 8652 23589999999876 44443321 2345 79999999999985
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.85 E-value=1.1e-20 Score=229.03 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=100.6
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC----eEE
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL----SVG 75 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL----tv~ 75 (711)
| ++|..++..+++|+ |+.+.||+|||+ +++|+....+ .|..+.|++|+..||.|.++.+..++..+|+ +++
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 7 99999999999987 999999999998 8888876554 5778999999999999999999999999999 999
Q ss_pred EEcCCCCHHHH----HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER----RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r----~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++|+.+...+ ...-.+||+++|++.| .+.+.. ++ .+.++||||||.|+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L-----~~~l~~------L~---~l~~lViDEah~~l 188 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRNFKIVITTTQFL-----SKHYRE------LG---HFDFIFVDDVDAIL 188 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH-----HHCSTT------SC---CCSEEEESCHHHHH
T ss_pred EEeCCCChhhHHHHHhhccCCCEEEEcHHHH-----HHHHHH------hc---cCCEEEEeChhhhh
Confidence 99999875443 1112389999999876 343321 44 78999999999987
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.84 E-value=7e-20 Score=222.86 Aligned_cols=124 Identities=21% Similarity=0.181 Sum_probs=100.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++.+|+......|..|.|++|+..||.|.++.+..|. ..|++|+++.+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~G 156 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYS 156 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeC
Confidence 68999999999999987 9999999999997766665434478899999999999999999999966 88999999999
Q ss_pred CCCHHHH-----Hhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEER-----RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r-----~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++..++ +..- .+||+++|++.| .|++. . ...+ .+.++||||||.++
T Consensus 157 g~~~~er~~~~~~l~~g~~~IlV~Tp~rL-~~~l~----~----l~~~---~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 157 SMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNRE----K----LSQK---RFDFVFVDDVDAVL 209 (1104)
T ss_dssp TCCTTHHHHHHHHHHTSCCSEEEEEHHHH-HHSHH----H----HHTS---CCSEEEESCHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEECHHHH-HHHHH----h----hccc---CcCEEEEeCCCccc
Confidence 9875332 2223 389999999887 34332 1 2234 89999999998765
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=3.3e-22 Score=219.85 Aligned_cols=110 Identities=22% Similarity=0.108 Sum_probs=87.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt-v~~i~ 78 (711)
.|+|.|..+...+.+++ |+.+.||.|||+++.+|+.. + |+.|.|++|+..|+.+-++.+.. ||++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~--~-~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~~~~ 165 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE--L-STPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH--H-CSCEEEEESSHHHHHHHHHHGGG----GCGGGEEEBS
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH--c-CCCEEEEECCHHHHHHHHHHHHh----CCCcceEEEC
Confidence 58999999999888766 99999999999999998863 2 88999999999999986665554 5999 99888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+. .++|+++|.+.+ ...+. .... .+.++||||+|.+.
T Consensus 166 g~~~~-------~~~Ivv~T~~~l-----~~~~~-----~~~~---~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 166 GRIKE-------LKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (472)
T ss_dssp SSCBC-------CCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEETGGGTT
T ss_pred CCcCC-------cCCEEEEEcHHH-----HHHHH-----HhcC---CCCEEEEECCcCCC
Confidence 87642 579999998654 22221 1223 68999999999975
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.1e-19 Score=213.66 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..++..+.+|+ |+.+.||.|||++|.+|++...-.|..|.+++|+..||.+-++.+..+|. .|++++|
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltG 161 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 161 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeC
Confidence 58899999999999887 99999999999999988874444788999999999999998888887665 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+.+. .-.++|+++|+..| ++.+... ....+ .+.++||||||.|. |.
T Consensus 162 d~~~-----~~~~~IvV~Tpe~L-----~~~L~~~--~~~l~---~l~lVViDEaH~l~-d~ 207 (1010)
T 2xgj_A 162 DITI-----NPDAGCLVMTTEIL-----RSMLYRG--SEVMR---EVAWVIFDEVHYMR-DK 207 (1010)
T ss_dssp SCEE-----CTTCSEEEEEHHHH-----HHHHHHT--CTTGG---GEEEEEEETGGGGG-CT
T ss_pred CCcc-----CCCCCEEEEcHHHH-----HHHHHcC--cchhh---cCCEEEEechhhhc-cc
Confidence 8643 12579999999765 4333322 23345 89999999999985 54
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.82 E-value=2.8e-20 Score=205.70 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|.|+|- .++.+++|+ |+.+.||+|||+++++|++..++ .|..+.|++|++.||.|-++.++ |++++..
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 76 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GLPIRYQ 76 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cceeeee
Confidence 4778886 467777765 88999999999999999976555 57789999999999999888764 7777654
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...... ...-...|.++|++.+ .+++... ..+. ++.++||||||.+
T Consensus 77 ~~~~~~---~~~~~~~i~~~t~~~l-----~~~l~~~---~~l~---~~~~iViDEah~~ 122 (451)
T 2jlq_A 77 TPAVKS---DHTGREIVDLMCHATF-----TTRLLSS---TRVP---NYNLIVMDEAHFT 122 (451)
T ss_dssp CTTCSC---CCCSSCCEEEEEHHHH-----HHHHHHC---SCCC---CCSEEEEETTTCC
T ss_pred eccccc---cCCCCceEEEEChHHH-----HHHhhCc---cccc---CCCEEEEeCCccC
Confidence 433211 1223457888998665 2222211 2344 7999999999965
No 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=4.7e-19 Score=196.47 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhc
Q 005155 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSN 89 (711)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~a 89 (711)
++.+|+ |+.+.||+|||++|.+|++-..+ .|..|.|++|++.||.+.++.+. |+++.......... ..
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---~t 87 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---HQ 87 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC---CC
Confidence 355666 88999999999999999985555 67899999999999999888775 77776544332210 11
Q ss_pred cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 90 YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 90 Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-..-|.+.|.+.+ ...+... ..++ ++.++||||||.+
T Consensus 88 ~~~~i~~~~~~~l-----~~~l~~~---~~l~---~~~~iViDEaH~~ 124 (459)
T 2z83_A 88 GNEIVDVMCHATL-----THRLMSP---NRVP---NYNLFVMDEAHFT 124 (459)
T ss_dssp CCCSEEEEEHHHH-----HHHHHSC---C-CC---CCSEEEESSTTCC
T ss_pred CCcEEEEEchHHH-----HHHhhcc---cccc---CCcEEEEECCccC
Confidence 1223555555433 1112111 2244 8999999999973
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.78 E-value=6.5e-20 Score=211.08 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|.|+|-.+..++++|+ |+.+.||+|||++|++|++...+ .|..+.|++|++.||.+.++.+. |+.++...
T Consensus 171 ~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v~~~~ 244 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPIRYQT 244 (618)
T ss_dssp CCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEECC
T ss_pred cCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCceeEec
Confidence 46777776666778888 99999999999999999975544 46689999999999998887665 66666322
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.... ....-...|.+.|.+.+ ...+... ..+. .+.++||||||.+
T Consensus 245 ~~l~---~~~tp~~~i~~~t~~~l-----~~~l~~~---~~l~---~~~~iViDEah~~ 289 (618)
T 2whx_A 245 PAVK---SDHTGREIVDLMCHATF-----TTRLLSS---TRVP---NYNLIVMDEAHFT 289 (618)
T ss_dssp TTSS---CCCCSSSCEEEEEHHHH-----HHHHHHC---SSCC---CCSEEEEESTTCC
T ss_pred ccce---eccCCCceEEEEChHHH-----HHHHhcc---cccc---CCeEEEEECCCCC
Confidence 1110 00001112333333221 1111111 1244 8999999999997
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=4.2e-18 Score=197.03 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=76.3
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR 91 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~ 91 (711)
+.+|+ |+.+.||+|||+++.+|++ . .|.+|.|++|++.||.+.++.+ .+.+|.+++...++.. ....
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll-~--~g~~vLVl~PTReLA~Qia~~l---~~~~g~~vg~~vG~~~-----~~~~ 297 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYA-A--QGYKVLVLNPSVAATLGFGAYM---SKAHGIDPNIRTGVRT-----ITTG 297 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHH-H--TTCCEEEEESCHHHHHHHHHHH---HHHHSCCCEEECSSCE-----ECCC
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHH-H--CCCeEEEEcchHHHHHHHHHHH---HHHhCCCeeEEECcEe-----ccCC
Confidence 44555 8899999999999988875 2 5778999999999999988854 4566888888877743 3456
Q ss_pred CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 92 ~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
++|+|+|++.| +.+. ....+ ++.++||||||.
T Consensus 298 ~~IlV~TPGrL----l~~~------~l~l~---~l~~lVlDEAH~ 329 (666)
T 3o8b_A 298 APVTYSTYGKF----LADG------GCSGG---AYDIIICDECHS 329 (666)
T ss_dssp CSEEEEEHHHH----HHTT------SCCTT---SCSEEEETTTTC
T ss_pred CCEEEECcHHH----HhCC------CcccC---cccEEEEccchh
Confidence 89999999986 3321 22334 799999999964
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.74 E-value=8.4e-17 Score=182.50 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCchhHHHHHHHHhC----C-C--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHD----G-S--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----G-~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
.|+|.|..++-.+.+ | + ++.|.||+|||++++.++....- .++.|.|++|+..|+.|-. ..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~---~~ 254 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK---DK 254 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH---HH
Confidence 477899999887653 3 2 89999999999997665542222 4589999999999999755 23
Q ss_pred HhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 66 VHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 66 ~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.|+.+|..++.+.++. ..-.++|+++|+..|. +.+...-. ....... .++++||||||.+.
T Consensus 255 ~~~~~~~~~~~~~~~~------~~~~~~I~v~T~~~l~-~~~~~~~~--~~~~~~~---~~~lvIiDEaH~~~ 315 (590)
T 3h1t_A 255 TFTPFGDARHKIEGGK------VVKSREIYFAIYQSIA-SDERRPGL--YKEFPQD---FFDLIIIDECHRGS 315 (590)
T ss_dssp CCTTTCSSEEECCC--------CCSSCSEEEEEGGGC-------CCG--GGGSCTT---SCSEEEESCCC---
T ss_pred HHHhcchhhhhhhccC------CCCCCcEEEEEhhhhc-cccccccc--cccCCCC---ccCEEEEECCcccc
Confidence 4556677777665432 2346799999999873 21211000 0011122 68999999999985
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.73 E-value=3.7e-17 Score=179.82 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=65.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A-L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Yg 97 (711)
|+.+.||+|||++|++|++-.+ -.|.+|.|++|+..||.|-++.++ |+++++..++++. ...-..-+.+.
T Consensus 6 lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---~~~~~~~~~~~ 76 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---ERTGNEIVDFM 76 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------------CCCSEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---cCCCCceEEEE
Confidence 8999999999999988887344 467799999999999998776654 7788866554332 11123345556
Q ss_pred CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 98 T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|.+.+ ...+.. ....+ ++.++||||+|.+
T Consensus 77 ~~~~l-----~~~l~~---~~~~~---~l~~vViDEaH~~ 105 (431)
T 2v6i_A 77 CHSTF-----TMKLLQ---GVRVP---NYNLYIMDEAHFL 105 (431)
T ss_dssp EHHHH-----HHHHHH---TCCCC---CCSEEEEESTTCC
T ss_pred chHHH-----HHHHhc---Ccccc---CCCEEEEeCCccC
Confidence 65544 111111 12244 7999999999995
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.72 E-value=1.4e-17 Score=183.90 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.3
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCcceec
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIkL 421 (711)
.+.++||||+|++.++.+++.|++.|+++..+|+. +++..+-. +.| .-.|.|||++++||+||.+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g-~~~vLVaT~v~e~GiDipv 241 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK-KPDFILATDIAEMGANLCV 241 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C-CCSEEEESSSTTCCTTCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC-CceEEEECChhheeeccCc
Confidence 47899999999999999999999999999999983 23333333 445 5589999999999999973
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.72 E-value=1.1e-17 Score=197.20 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHH--H-c--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNA--L-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~Lpa~l~A--L-~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|.++|...++..+ +|. ++...||+|||+ .+|+++.. + . |..+.|++|++.||.+.++.+. ..+|++
T Consensus 93 lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~---~~~~~~ 167 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA---EEMDVK 167 (773)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH---HHTTCC
T ss_pred CChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHH---HHhCCc
Confidence 47889999998665 454 899999999999 45655322 2 2 5669999999999998887554 444544
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
++..++.....+....-.++|+|+|++.+. +.+... ..+. ++.++||||+|.
T Consensus 168 v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~-----r~l~~~---~~l~---~~~~lIlDEah~ 219 (773)
T 2xau_A 168 LGEEVGYSIRFENKTSNKTILKYMTDGMLL-----REAMED---HDLS---RYSCIILDEAHE 219 (773)
T ss_dssp BTTTEEEEETTEEECCTTCSEEEEEHHHHH-----HHHHHS---TTCT---TEEEEEECSGGG
T ss_pred hhheecceeccccccCCCCCEEEECHHHHH-----HHHhhC---cccc---CCCEEEecCccc
Confidence 432222100001112236789999998872 222111 2344 799999999996
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=1.5e-16 Score=200.63 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=98.6
Q ss_pred CchhHHHHHHHHhC-CC--eEEecCCCcHHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 3 HFDVQIIGGAVLHD-GS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 3 p~dvQl~g~~~L~~-G~--IaEm~TGEGKTLva~Lpa~l~AL~------------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+.++|-.+.+..++ ++ ++.+.||+|||++|.||++ ++|. |..|..|+|...||.+-+..++..|
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il-~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCML-REIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHH-HHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHH-HHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 45899999986553 44 9999999999999999985 7763 5679999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 68 RFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 68 ~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+|++|+..+|+++... +..-.+||+++|+..+ |.|..+. .+....+ .+.++||||||.+
T Consensus 159 ~~~gi~V~~~tGd~~~~~-~~~~~~~IlVtTpEkl--d~llr~~---~~~~~l~---~v~~vIiDEvH~l 219 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCK-EEISATQIIVCTPEKW--DIITRKG---GERTYTQ---LVRLIILDEIHLL 219 (1724)
T ss_dssp TTTTCCEEECCSSCSSCC-TTGGGCSEEEECHHHH--HHHTTSS---TTHHHHT---TEEEEEETTGGGG
T ss_pred hhCCCEEEEEECCCCCCc-cccCCCCEEEECHHHH--HHHHcCC---ccchhhc---CcCEEEEecchhc
Confidence 999999999999876432 2345789999999874 4332211 1123455 7999999999943
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.71 E-value=8.1e-18 Score=195.43 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=54.3
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCcceec
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIkL 421 (711)
.+.++||||++++.++.+++.|++.|+++..||++ +++..+-. +.| .-.|.||||+++||+||.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVaTdv~e~GIDipv 474 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA 474 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEECGGGGTTCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEECchhhcceeeCC
Confidence 57899999999999999999999999999999983 34433333 345 5589999999999999973
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.71 E-value=3.4e-15 Score=179.78 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEEeCCCcchHhHHHHHH-hcCC-CccEEEE
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNARPKYAAREAETVA-QAGR-KYAITIS 409 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~-~gi~~~vLnA~~~~~~~Ea~Iia-~AG~-~G~VTIA 409 (711)
.....|..++.+.+.. ..+..+||||+++..++.++..|.. .|+++..+|+++...+++..+-. +.|. .-.|.||
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3456788888877765 5788999999999999999999995 69999999999877788876666 5664 4689999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+++|+|+|+.
T Consensus 563 T~v~~~GlDl~ 573 (968)
T 3dmq_A 563 SEIGSEGRNFQ 573 (968)
T ss_dssp SCCTTCSSCCT
T ss_pred cchhhcCCCcc
Confidence 99999999995
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=1.4e-15 Score=168.35 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCC-CccEEEEcC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGR-KYAITISTN 411 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~-~G~VTIATn 411 (711)
...|..++.+.+.+....|.++||||.++..++.+...|.+. |+++..+++.+...+|+..+-. +.|. ...+.|+|+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 356788888888777788999999999999999999999986 9999999998766666655544 4553 334899999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
++|+|+|+.
T Consensus 403 ~~~~Glnl~ 411 (500)
T 1z63_A 403 AGGFGINLT 411 (500)
T ss_dssp CC-CCCCCT
T ss_pred cccCCCchh
Confidence 999999984
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=9.9e-16 Score=193.22 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=97.6
Q ss_pred CchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEE
Q 005155 3 HFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVG 75 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~ 75 (711)
+.|+|-.+...++++. ++.+.||+|||++|-+|++ ++|. |..|.+++|+..||.+-+.++...| ..+|++|+
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail-~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~ 1005 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAIL-RMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV 1005 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHH-HHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHH-HHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEE
Confidence 5689999999886543 8999999999999999996 6663 5679999999999999999887655 57999999
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+|+.+...+ ..-.+||+++|++.+ |.|..+... ....+ .+.++|+||+|.+
T Consensus 1006 ~ltGd~~~~~~-~~~~~~IiV~TPEkl--d~llr~~~~---~~~l~---~v~lvViDE~H~l 1058 (1724)
T 4f92_B 1006 LLTGETSTDLK-LLGKGNIIISTPEKW--DILSRRWKQ---RKNVQ---NINLFVVDEVHLI 1058 (1724)
T ss_dssp ECCSCHHHHHH-HHHHCSEEEECHHHH--HHHHTTTTT---CHHHH---SCSEEEECCGGGG
T ss_pred EEECCCCcchh-hcCCCCEEEECHHHH--HHHHhCccc---ccccc---eeeEEEeechhhc
Confidence 99998765443 334689999999875 444332221 12344 7999999999965
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.68 E-value=5.9e-16 Score=156.04 Aligned_cols=143 Identities=24% Similarity=0.256 Sum_probs=115.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..++..+++|+ ++.+.||+|||++|.+|++.... .|..+.|++|+..||.|-++++..+...+|
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 130 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR 130 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 58999999999999887 99999999999999999985544 266799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
++++++.++.+..... ...++||+++|++.| .+++... ....+ .+.++||||||.++ |.+
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~l~-~~~------- 192 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL-IDFLECG------KTNLR---RTTYLVLDEADRML-DMG------- 192 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SCCCT---TCCEEEETTHHHHH-HTT-------
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CCCcc---cccEEEEeCHHHHh-hhC-------
Confidence 9999999998755433 335689999999987 5555432 12234 78999999999986 443
Q ss_pred CCCCCCccchHHHHHHHHHcc
Q 005155 150 GEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 193 --------~~~~~~~i~~~~~ 205 (242)
T 3fe2_A 193 --------FEPQIRKIVDQIR 205 (242)
T ss_dssp --------CHHHHHHHHTTSC
T ss_pred --------cHHHHHHHHHhCC
Confidence 3446666666664
No 57
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=156.39 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=114.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+++|..+...+++|+ |+++.||+|||++|++|++-... .|..|.|++|+..||.+.++.+..++..+|+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 155 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH 155 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc
Confidence 38999999999999888 99999999999999999974433 4788999999999999999999999999999
Q ss_pred eEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 73 SVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 73 tv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
+++++.++.+.... ...-++||+++|++.+ .++++.. + ....+ .+.++||||||.|+ |.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~----~-~~~~~---~l~~lViDEah~l~-~~~-------- 217 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-LDHMQNT----P-GFMYK---NLQCLVIDEADRIL-DVG-------- 217 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHC----T-TCCCT---TCCEEEECSHHHHH-HTT--------
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHH-HHHHHcc----C-Ccccc---cCCEEEEcChHHHh-hhh--------
Confidence 99999998775433 2335689999999887 4444331 1 12234 78999999999986 443
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 218 -------~~~~l~~i~~~~~ 230 (262)
T 3ly5_A 218 -------FEEELKQIIKLLP 230 (262)
T ss_dssp -------CHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHhCC
Confidence 3346677777775
No 58
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=1.6e-16 Score=167.80 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=74.6
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++.+..+|+.++.+.+... .+.++||||++++.++.++..|.+.|+++..||+++.+.+++..+.. +.| ...|+|
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLV 83 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLV 83 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEE
T ss_pred EEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEE
Confidence 34566788999888777553 48899999999999999999999999999999998777777766665 445 678999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
|||+|+||+||.
T Consensus 84 aT~va~~Gidi~ 95 (300)
T 3i32_A 84 ATDVAARGLDIP 95 (300)
T ss_dssp ECSTTTCSTTCC
T ss_pred EechhhcCcccc
Confidence 999999999994
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.64 E-value=1.3e-14 Score=168.58 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=55.0
Q ss_pred CcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hc--CCCccEEEEcCCCcCCcceec
Q 005155 354 RPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 354 rPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~A--G~~G~VTIATnmAGRGTDIkL 421 (711)
..-+|||.|.+.++.+++.|.+.|+.+.++|+++...+|+..+.. +. | .-.|.||||+++||+||.+
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi~v 390 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNLSI 390 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCCCB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCcCc
Confidence 345888999999999999999999999999998766666655444 44 4 4589999999999999943
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.63 E-value=4.7e-15 Score=148.24 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=102.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++...+ .|..|.|++|+..||.+.++.+..+....|+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 58999999999998887 99999999999999999974332 4778999999999999999999999999999
Q ss_pred eEEEEcCCCCH-HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 73 SVGLIQRGMIP-EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 73 tv~~i~~~~~~-~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++++.++.+. .+......+||+++|++.+ .+++.... ..... .+.++||||||.++
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~---~~~~lViDEah~~~ 184 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRL-LQHMDETV-----SFHAT---DLQMLVLDEADRIL 184 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHH-HHHHHHCS-----SCCCT---TCCEEEETTHHHHH
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHH-HHHHHhcC-----Ccccc---cccEEEEeChHHHh
Confidence 99999988653 3334446789999999887 34443210 12233 78999999999886
No 61
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.63 E-value=7.1e-16 Score=154.00 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=74.1
Q ss_pred CeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEE
Q 005155 329 IQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAIT 407 (711)
Q Consensus 329 d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VT 407 (711)
..+.....+|+.++.+.+.. ..+.++||||+++..++.+++.|.+.|+++..+|+++.+.+++..+-. +.| ...|+
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vl 85 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVL 85 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEE
T ss_pred eEEeCCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEE
Confidence 34556678899988877754 468899999999999999999999999999999998777777665555 445 56799
Q ss_pred EEcCCCcCCccee
Q 005155 408 ISTNMAGRGTDII 420 (711)
Q Consensus 408 IATnmAGRGTDIk 420 (711)
||||+|+||+||.
T Consensus 86 vaT~~~~~Gidi~ 98 (212)
T 3eaq_A 86 VATDVAARGLDIP 98 (212)
T ss_dssp EECTTTTCSSSCC
T ss_pred EecChhhcCCCCc
Confidence 9999999999994
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.60 E-value=9.7e-15 Score=145.20 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=106.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+++|..++..+++|+ |+.+.||+|||++|.+|++.... .|..+.|++|+..||.|-++++..+. ..
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~ 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YK 120 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-cc
Confidence 68999999999999887 99999999999999999974332 56789999999999999999998875 56
Q ss_pred CCeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+++.++.++.+... +...-++||+++|++.+ .+++... ....+ .+.++||||||.++ |.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~-~~~------ 183 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMNN------SVNLR---SITYLVIDEADKML-DME------ 183 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHH-HHHHHTT------CCCCT---TCCEEEECCHHHHH-HTT------
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CcCcc---cceEEEEECHHHHh-ccc------
Confidence 899999988865432 22334689999999887 3333221 12244 79999999999986 432
Q ss_pred cCCCCCCccchHHHHHHHHHcc
Q 005155 149 SGEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 184 ---------~~~~~~~i~~~~~ 196 (228)
T 3iuy_A 184 ---------FEPQIRKILLDVR 196 (228)
T ss_dssp ---------CHHHHHHHHHHSC
T ss_pred ---------hHHHHHHHHHhCC
Confidence 3446666766664
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=146.55 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=113.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|+++|..+...+++|+ |+.+.||+|||+++.+|++...+. +..|.|++|++.||.+-++.+..+...+|+++++
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 58999999999999887 999999999999999999744443 3469999999999999999999999999999999
Q ss_pred EcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 77 IQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 77 i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
+.++.+.. .+.....+||+++|++.| .++|+. .+ ....+ .+.++||||||.++ |..
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~~-~~~l~---~~~~lViDEah~l~-~~~------------ 202 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRL-IDHLEN----TK-GFNLR---ALKYLVMDEADRIL-NMD------------ 202 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHH-HHHHHH----ST-TCCCT---TCCEEEECSHHHHH-HTT------------
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHc----CC-CcCcc---ccCEEEEcChhhhh-ccC------------
Confidence 99987743 333456889999999887 444432 11 12234 78999999999886 432
Q ss_pred CccchHHHHHHHHHcc
Q 005155 155 DVARYPVAAKVAELLV 170 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 203 ---~~~~l~~i~~~~~ 215 (249)
T 3ber_A 203 ---FETEVDKILKVIP 215 (249)
T ss_dssp ---CHHHHHHHHHSSC
T ss_pred ---hHHHHHHHHHhCC
Confidence 3345666666664
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.58 E-value=1.2e-14 Score=143.83 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=111.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc----C
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL----G 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L----G 71 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++ ..+. +..+.|++|+..||.+-++++..+...+ +
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM-EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 58999999999998877 9999999999999999997 4443 5689999999999999999999999888 8
Q ss_pred CeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+.++++.++.+....... ..+||+++|++.+ .++++.. ..... .+.++||||||.++ +.+
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~-~~~------- 166 (219)
T 1q0u_A 105 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI-NDFIREQ------ALDVH---TAHILVVDEADLML-DMG------- 166 (219)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH-HHHHHTT------CCCGG---GCCEEEECSHHHHH-HTT-------
T ss_pred eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHH-HHHHHcC------CCCcC---cceEEEEcCchHHh-hhC-------
Confidence 999999988765443333 3679999999887 3444321 12234 78999999999986 322
Q ss_pred CCCCCCccchHHHHHHHHHcc
Q 005155 150 GEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~ 170 (711)
++..+..+...+.
T Consensus 167 --------~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 167 --------FITDVDQIAARMP 179 (219)
T ss_dssp --------CHHHHHHHHHTSC
T ss_pred --------hHHHHHHHHHhCC
Confidence 3456667776664
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.58 E-value=5.7e-15 Score=155.02 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
+|+++|..+++.++.| + |+.+.||+|||++|++|++-.... +..+.|++|++.||.|.++.+..+..++ +++
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~ 193 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE
Confidence 6999999999999987 4 999999999999999999733322 3369999999999999999999998876 799
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++..++.+.. +.....+||++||++.| .|+|.. . ...... .+.++||||||.|+
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~IlV~TP~~l-~~~l~~----~-~~~~l~---~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 194 LAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMI 248 (300)
T ss_dssp EEEESTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT----T-CCCCGG---GCSEEEETTHHHHH
T ss_pred EEEEeCCccHh-hhhcCCCCEEEECHHHH-HHHHHh----c-CCCChh---hceEEEEeCHHHHh
Confidence 99888875432 23357789999999987 454432 1 112234 78999999999997
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.58 E-value=1.4e-14 Score=145.68 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..++..+++|+ |+.+.||+|||++|++|++ ..+ .+..+.|++|+..||.+-++.+..+...+++++.
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL-QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEE
Confidence 48999999999999887 9999999999999999997 444 4678999999999999999999999999999999
Q ss_pred EEcCCCCHHHH--Hhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER--RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++.+.... .... .++|+++|++.+ ++++.... .... .+.++||||||.++
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~~~ 186 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRV-FDMLNRRY------LSPK---WIKMFVLDEADEML 186 (237)
T ss_dssp EECC-------------CCCSEEEECHHHH-HHHHHTTS------SCST---TCCEEEEESHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHH-HHHHHhCC------cCcc---cCcEEEECCchHhh
Confidence 98887653322 2222 389999999887 45554321 1233 78999999999986
No 67
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.57 E-value=1.6e-14 Score=146.16 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++++|++...+. |..|.|++|+..||.+.++.+..+.
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 58999999999999887 999999999999999999754442 3589999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 68 RFLGLSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 68 ~~LGLtv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...+++++++.++.+.. .+.....+||+++|++.| .+++... ....+ .+.++||||||.++
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~ 187 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL-VDFIEKN------KISLE---FCKYIVLDEADRML 187 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHH-HHHHHTT------SBCCT---TCCEEEEETHHHHH
T ss_pred ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHH-HHHHHcC------CCChh---hCCEEEEeCHHHHH
Confidence 99999999999887633 233445789999999887 4444321 12234 78999999999986
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=150.68 Aligned_cols=131 Identities=20% Similarity=0.321 Sum_probs=102.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..++..+++|+ ++.+.||+|||++|.+|++.... .|..|.|++|+..||.+-++.+..++..+|+++.
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIH 130 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 48999999999999887 99999999999999999974333 3557999999999999999999999999999998
Q ss_pred EEcCCCCHHHH---HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 76 LIQRGMIPEER---RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 76 ~i~~~~~~~~r---~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.+.++.....+ .....+||+++|++.+ .++++. .......+ .+.++||||||.++-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~~~~~~~~---~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRL-IYLLKQ----DPPGIDLA---SVEWLVVDESDKLFED 190 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHH-HHHHHS----SSCSCCCT---TCCEEEESSHHHHHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHH-HHHHHh----CCCCcccc---cCcEEEEeChHHhccc
Confidence 87665332221 1234679999999887 344432 21122344 7899999999999743
No 69
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=3.1e-14 Score=138.76 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=111.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..|+.+-++++..+...+ ++++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL-ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHH-HHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHH-HHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999887 9999999999999999997 444 24579999999999999999999999888 8999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+...++.+.... .....+||+++|++.+ .+.+... ....+ .+.++||||||.++ |..
T Consensus 104 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~-~~~---------- 162 (206)
T 1vec_A 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRI-LDLIKKG------VAKVD---HVQMIVLDEADKLL-SQD---------- 162 (206)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEETHHHHT-STT----------
T ss_pred EEEeCCccHHHHHHhcCCCCCEEEeCHHHH-HHHHHcC------CcCcc---cCCEEEEEChHHhH-hhC----------
Confidence 999998775433 3345689999999887 3444321 12234 78999999999986 321
Q ss_pred CCCccchHHHHHHHHHcc
Q 005155 153 SKDVARYPVAAKVAELLV 170 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~ 170 (711)
++..+..+...+.
T Consensus 163 -----~~~~l~~i~~~~~ 175 (206)
T 1vec_A 163 -----FVQIMEDIILTLP 175 (206)
T ss_dssp -----THHHHHHHHHHSC
T ss_pred -----cHHHHHHHHHhCC
Confidence 4456677777764
No 70
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.56 E-value=1.7e-14 Score=144.22 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=102.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++++|+. ..+ .+..|.|++|+..||.|.++.+..+...+ ++++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 124 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL-DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 124 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceE
Confidence 48999999999999887 9999999999999999996 444 35689999999999999999999988766 9999
Q ss_pred EEEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++..++.+...+. ....+||+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~ 179 (230)
T 2oxc_A 125 HVFIGGTPLSQDKTRLKKCHIAVGSPGRI-KQLIELD------YLNPG---SIRLFILDEADKLL 179 (230)
T ss_dssp EEECTTSCHHHHHHHTTSCSEEEECHHHH-HHHHHTT------SSCGG---GCCEEEESSHHHHH
T ss_pred EEEeCCCCHHHHHHhccCCCEEEECHHHH-HHHHhcC------Ccccc---cCCEEEeCCchHhh
Confidence 9999988754433 345789999999887 3444321 12234 78899999999986
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.6e-13 Score=155.75 Aligned_cols=85 Identities=24% Similarity=0.269 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc--cEEEEcCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITISTNM 412 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G--~VTIATnm 412 (711)
..|+..+.+.+.+..+.|.+|||||......+.|...|...|+++..+++.+...+|++.|-. ++|..+ .+.|+|..
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 568888888888888899999999999999999999999999999999998766777766655 555555 59999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
+|.|+|+.
T Consensus 635 gg~GlNL~ 642 (800)
T 3mwy_W 635 GGLGINLM 642 (800)
T ss_dssp HTTTCCCT
T ss_pred ccCCCCcc
Confidence 99999984
No 72
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.53 E-value=2.5e-12 Score=149.24 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=93.3
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.++..++..-.....+|.|......+. .-.++..+.. |... ..|.........+...++.++....+.|.+|||
T Consensus 371 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r-~~~l-~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 444 (664)
T 1c4o_A 371 LRFEEFLERVSQVVFVSATPGPFELAH----SGRVVEQIIR-PTGL-LDPLVRVKPTENQILDLMEGIRERAARGERTLV 444 (664)
T ss_dssp CCHHHHHHTCSEEEEEESSCCHHHHHH----CSEEEEECSC-TTCC-CCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHhhcCCEEEEecCCCHHHHHh----hhCeeeeeec-cCCC-CCCeEEEecccchHHHHHHHHHHHHhcCCEEEE
Confidence 345556665566788999987543222 1122222211 1111 112222334456777788888887788999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
||+|...++.|++.|.+.|+++..+|+++.+.+|+..+-. +.| .-.|+||||+++||+||.
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip 506 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIP 506 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCC
Confidence 9999999999999999999999999998766666654443 456 457999999999999994
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.53 E-value=2.4e-12 Score=148.52 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc--cEEEEc
Q 005155 335 ARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITIST 410 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G--~VTIAT 410 (711)
...|+..+...+.... ..+..|||||.+....+.|...|...|+++..+++.+...+|++.+-. +.|... .+.|+|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 3456665433333322 358999999999999999999999999999999998766677765555 666544 489999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
..+|+|+|+.
T Consensus 477 ~a~g~Glnl~ 486 (644)
T 1z3i_X 477 KAGGCGLNLI 486 (644)
T ss_dssp GGSCTTCCCT
T ss_pred ccccCCcccc
Confidence 9999999983
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.52 E-value=8.6e-14 Score=137.53 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=98.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+.+|+ |+.+.||+|||+++++|++ ..+ .+..+.|++|+..||.+-++.+..+....|++++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999999887 9999999999999999997 444 3568999999999999999999999999999999
Q ss_pred EEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++.+..... ....+||+++|++.| ++++... ..... .+.++||||||.++
T Consensus 115 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 168 (224)
T 1qde_A 115 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQRR------RFRTD---KIKMFILDEADEML 168 (224)
T ss_dssp EECC----------CTTCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCcchHHHHhcCCCCCEEEECHHHH-HHHHHhC------Ccchh---hCcEEEEcChhHHh
Confidence 999887644333 234589999999887 3444321 12233 78999999999986
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=6e-14 Score=138.53 Aligned_cols=127 Identities=22% Similarity=0.237 Sum_probs=102.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+.+|+ |+.+.||.|||+++.+|+. ..+. +..+.|++|+..|+.+-++++..+...+ |+++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH-HhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 48999999999998887 9999999999999999997 4432 3479999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
+...++.+....... ..++|+++|++.+ .++++. . ....+ .+.++||||||.++-
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN----K--SLNLK---HIKHFILDECDKMLE 172 (220)
T ss_dssp EEESCCSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT----T--SSCCT---TCCEEEEESHHHHHS
T ss_pred EEEeCCCChHHHHHHHhcCCCCEEEeCHHHH-HHHHHh----C--CCCcc---cCCEEEEcCHHHHhc
Confidence 999998875444332 2469999999886 333332 1 12244 789999999999973
No 76
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.51 E-value=1.9e-13 Score=165.26 Aligned_cols=121 Identities=21% Similarity=0.118 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHhC----------------CCeEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHD----------------GSIAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----------------G~IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae 61 (711)
.|+|.|.-|+..+.+ +-++.|.||+|||+++ +++. ..+. +..|.||||+..|+.|-.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 478899999987653 2399999999999997 5554 3343 2589999999999998777
Q ss_pred HHHHHhhhcCCeEEEEcCCCC-HHHHHh--ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 62 WMERVHRFLGLSVGLIQRGMI-PEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 62 ~~~~~y~~LGLtv~~i~~~~~-~~~r~~--aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+..|... .+.++.+ ...+.. .-.++|+++|+..|. +.+... ....... ++.++||||||++.
T Consensus 349 ~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~-~~l~~~----~~~~~~~---~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 349 EYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLN-NLMKAE----SDLPVYN---QQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHH-HHHHHC----CCCGGGG---SCEEEEEESCCTTH
T ss_pred HHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHH-HHHhcc----cchhccc---cccEEEEEccchhc
Confidence 76665431 1223322 332222 246899999999873 222221 0011233 67899999999975
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.50 E-value=2.4e-13 Score=132.32 Aligned_cols=124 Identities=25% Similarity=0.258 Sum_probs=98.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+|+|..+...+.+|+ ++.+.||+|||+++++|++ ..+ .+..+.|++|+..|+.+-++.+..++.. +
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA-ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--L 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--S
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--c
Confidence 58999999999999887 9999999999999999997 444 3668999999999999999988887654 7
Q ss_pred eEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 73 SVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 73 tv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++....++.+.. .+.....++|+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 157 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRA-LDYLRQG------VLDLS---RVEVAVLDEADEML 157 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SSCCT---TCSEEEEESHHHHH
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEEEChhHhh
Confidence 788888876532 233345789999999886 3444331 12234 79999999999986
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.41 E-value=2.1e-12 Score=124.68 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=73.1
Q ss_pred EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 331 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 331 i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+.....+|+.++.+.+... .+.++||||++...++.++..|...|+++..+|+++.+.+++..+-. +.| ...|.||
T Consensus 11 ~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLva 87 (172)
T 1t5i_A 11 VKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVA 87 (172)
T ss_dssp EECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEE
T ss_pred EECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEE
Confidence 4456778999888777653 67799999999999999999999999999999998777777766655 445 6689999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+++|||+|+.
T Consensus 88 T~~~~~Gldi~ 98 (172)
T 1t5i_A 88 TNLFGRGMDIE 98 (172)
T ss_dssp SSCCSTTCCGG
T ss_pred CCchhcCcchh
Confidence 99999999994
No 79
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=130.91 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CCCEEEEecCHHHHHH-HHHHHHHHhhhcC
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDYLAQR-DAEWMERVHRFLG 71 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G~~VhVvT~NdyLA~R-Dae~~~~~y~~LG 71 (711)
+.|+|.|..+...+++|+ |+.+.||.|||+++.+|+.-.... +..|.|++|+..|+.+ -.+++..+... +
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~ 110 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 110 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-T
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-C
Confidence 368999999999888766 999999999999999998633222 6789999999999998 66777777655 8
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++++...++.+.. .+.....++|+++|+..| .+++.............. .++++||||||.++
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~~~~~~~---~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-ENSLLNLENGEDAGVQLS---DFSLIIIDECHHTN 175 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHH-HHHHHC-------CCCGG---GCSEEEETTC----
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHH-HHHHhccCcccccccchh---cccEEEEECchhhc
Confidence 8998888764321 222334689999999876 333332211000012233 78999999999985
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.38 E-value=5.5e-12 Score=120.20 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=73.1
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.+.....+|+.++.+.+.. ..+.++||||+++..++.+++.|.+.|+++..+|+++.+.+++..+-. +.| ...|.|
T Consensus 14 ~~~~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv 90 (163)
T 2hjv_A 14 VIQVREENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLV 90 (163)
T ss_dssp EEECCGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE
T ss_pred EEECChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3445678899988877765 467899999999999999999999999999999998766666655554 455 568999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||++++||+|+.
T Consensus 91 ~T~~~~~Gld~~ 102 (163)
T 2hjv_A 91 ATDVAARGIDIE 102 (163)
T ss_dssp ECGGGTTTCCCS
T ss_pred ECChhhcCCchh
Confidence 999999999995
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.34 E-value=4.2e-12 Score=124.20 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=61.0
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++....+|+.++.+.+.. ...+.++||||+++..++.++..|...|+++..+++++.+.+++..+-. +.| .-.|.|
T Consensus 24 ~~~v~~~~K~~~L~~ll~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLv 101 (185)
T 2jgn_A 24 VVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILV 101 (185)
T ss_dssp EEECCGGGHHHHHHHHHHH-C-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEE
T ss_pred EEEeCcHHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3455677899988877765 3467899999999999999999999999999999998666666655554 456 567999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||+++|||+||.
T Consensus 102 aT~~~~~Gldi~ 113 (185)
T 2jgn_A 102 ATAVAARGLDIS 113 (185)
T ss_dssp EEC------CCC
T ss_pred EcChhhcCCCcc
Confidence 999999999994
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=126.06 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=72.3
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++....+|...+.+.+.. .+.++||||+++..++.+++.|+..|+++..+++++.+.+++..+-. +.| .-.|.|
T Consensus 34 ~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv 109 (191)
T 2p6n_A 34 VEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLV 109 (191)
T ss_dssp EEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEE
T ss_pred EEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEE
Confidence 3456677899888776653 46689999999999999999999999999999998777777765555 456 567999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||+++|||+||.
T Consensus 110 aT~~~~~Gldi~ 121 (191)
T 2p6n_A 110 ATDVASKGLDFP 121 (191)
T ss_dssp ECHHHHTTCCCC
T ss_pred EcCchhcCCCcc
Confidence 999999999994
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.31 E-value=2e-11 Score=116.32 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=69.2
Q ss_pred eChhH-HHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc
Q 005155 333 ATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (711)
Q Consensus 333 ~t~~~-K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT 410 (711)
....+ |..++.+.+.. ..+.++||||++++.++.++..|.+.|+++..+|+++...+++..+-. +.| ...|.|||
T Consensus 11 ~~~~~~K~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T 87 (165)
T 1fuk_A 11 VEEEEYKYECLTDLYDS--ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILIST 87 (165)
T ss_dssp EESGGGHHHHHHHHHHH--TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEE
T ss_pred CCcchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 33445 88888776655 256799999999999999999999999999999998766666655544 455 56899999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
++++||+|+.
T Consensus 88 ~~~~~G~d~~ 97 (165)
T 1fuk_A 88 DLLARGIDVQ 97 (165)
T ss_dssp GGGTTTCCCC
T ss_pred ChhhcCCCcc
Confidence 9999999995
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=2.3e-11 Score=117.00 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
..+|+.++.+.+.. ..+.++||||+++..++.++..|.+.|+++..+|+++.+.+++..+-. +.| ...|.|||+++
T Consensus 18 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~ 94 (175)
T 2rb4_A 18 RKDKYQALCNIYGS--ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHHHTT--SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSC
T ss_pred hHhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecch
Confidence 34488887766644 256799999999999999999999999999999998767677655555 455 56899999999
Q ss_pred cCCccee
Q 005155 414 GRGTDII 420 (711)
Q Consensus 414 GRGTDIk 420 (711)
|||+|+.
T Consensus 95 ~~Gid~~ 101 (175)
T 2rb4_A 95 ARGIDVK 101 (175)
T ss_dssp CTTTCCT
T ss_pred hcCCCcc
Confidence 9999994
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.25 E-value=1.3e-10 Score=131.57 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|.-.+- ++.+|+ ++||.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++.. +++++.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~----l~~~~~ 79 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKL----LGLKTG 79 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGG----GTCCEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHh----cCCcEE
Confidence 47888877643 455776 99999999999999999863 478999999999999988876655 577777
Q ss_pred EEcCCCC----------H---------------------------------------HHHHhccCCCeEEECCCchhhHH
Q 005155 76 LIQRGMI----------P---------------------------------------EERRSNYRCDITYTNNSELGFDY 106 (711)
Q Consensus 76 ~i~~~~~----------~---------------------------------------~~r~~aY~~DI~YgT~~elgfDy 106 (711)
.+.+... + ..|+.+..|||+++|.+-|--+.
T Consensus 80 ~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~ 159 (540)
T 2vl7_A 80 FLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKP 159 (540)
T ss_dssp EC---------------------------------------------------------CTTGGGCSEEEEETHHHHSHH
T ss_pred EecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHH
Confidence 6553210 0 01334567899999987662223
Q ss_pred HHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 107 LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 107 LrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.+..+.......... +..++|+||||.+ |.++
T Consensus 160 ~~~~~~~~~~~~~~~---~~~~vIiDEAHnl--~~a~ 191 (540)
T 2vl7_A 160 IRNSVFCNKDDCLKL---EDYLIVIDEAHNL--LEAD 191 (540)
T ss_dssp HHHHHSCSSTTSCCG---GGEEEEETTGGGG--GGGG
T ss_pred HHHhhCcccccccCc---CCCEEEEEccccH--HHHH
Confidence 333222000000223 6789999999998 4354
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.17 E-value=3.1e-11 Score=124.34 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..+...++++ .|+.+.||.|||+++.+++......|. .|.|++|+..|+.+-.+.+..+....++.++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 6899999999976644 388999999999999888764434554 8999999999999999999888777777888888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+... .....++|+++|++.+ ..+. ....+ .++++||||||.+.
T Consensus 193 ~~~~~~~-~~~~~~~I~v~T~~~l-----~~~~-----~~~~~---~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 193 GGASKDD-KYKNDAPVVVGTWQTV-----VKQP-----KEWFS---QFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSSTT-CCCTTCSEEEECHHHH-----TTSC-----GGGGG---GEEEEEEETGGGCC
T ss_pred CCCcchh-hhccCCcEEEEchHHH-----HhhH-----HHHHh---hCCEEEEECCccCC
Confidence 7764322 2235689999999644 2211 12234 78999999999985
No 87
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.16 E-value=7.4e-10 Score=128.47 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=92.4
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.++..++..-.....+|.|......++ .-.++..+. +|.... .|.........+...++.++....+.|.+|||
T Consensus 377 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-r~~~l~-~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 450 (661)
T 2d7d_A 377 LRFEEFEKHMHNIVYVSATPGPYEIEH----TDEMVEQII-RPTGLL-DPLIDVRPIEGQIDDLIGEIQARIERNERVLV 450 (661)
T ss_dssp CCHHHHHHTCSEEEEECSSCCHHHHHH----CSSCEEECC-CTTCCC-CCEEEEECSTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred ccHHHHhccCCCEEEEecCCChhHHHh----hhCeeeeee-cccCCC-CCeEEEecccchHHHHHHHHHHHHhcCCeEEE
Confidence 345556555556778999986543222 112222211 111111 11122233445677788888887778999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
||+|...++.|++.|.+.|+++..+|+++.+.+|+..+-. +.| .-.|+||||+++||.||.
T Consensus 451 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIP 512 (661)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccC
Confidence 9999999999999999999999999998766667655444 556 457999999999999994
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.10 E-value=1.9e-10 Score=130.26 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+.|+|.|.-.+- ++.+|+ ++|+.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++..+.+.+++++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~ 78 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITF 78 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccE
Confidence 357888887544 455777 99999999999999999974 688999999999999999999998888889999
Q ss_pred EEEcCCC---------------------------------CH--------------------HHHHhccCCCeEEECCCc
Q 005155 75 GLIQRGM---------------------------------IP--------------------EERRSNYRCDITYTNNSE 101 (711)
Q Consensus 75 ~~i~~~~---------------------------------~~--------------------~~r~~aY~~DI~YgT~~e 101 (711)
.++.+.. +. ..|+.+-.|||+++|.+-
T Consensus 79 ~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~ 158 (551)
T 3crv_A 79 SFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPY 158 (551)
T ss_dssp EECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHH
T ss_pred EEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchH
Confidence 8876521 00 014556789999999986
Q ss_pred hhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 102 lgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
|--+.+++.+. ... ...++||||||.+. | ++.
T Consensus 159 l~~~~~~~~~~------~~~---~~~~vIiDEAHnl~-d-~~~ 190 (551)
T 3crv_A 159 FFIDRYREFID------IDL---REYMIVIDEAHNLD-K-VNE 190 (551)
T ss_dssp HHCHHHHTTSC------CCS---TTEEEEETTGGGGG-G-GGG
T ss_pred hcCHHHHHhcC------CCc---CCeEEEEecccchH-H-HHH
Confidence 62222232211 122 67899999999986 6 654
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.64 E-value=1.5e-11 Score=117.90 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCc
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAG 414 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAG 414 (711)
.+|..++.+.+.. ..+.++||||+++..++.+++.|+..|+++..+|+++...+++..+-. +.| ...|.|||++++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVAA 91 (170)
Confidence 5677776665544 356789999999999999999999999999999998666666654444 344 457999999999
Q ss_pred CCccee
Q 005155 415 RGTDII 420 (711)
Q Consensus 415 RGTDIk 420 (711)
||+|+.
T Consensus 92 ~Gid~~ 97 (170)
T 2yjt_D 92 RGIDIP 97 (170)
Confidence 999995
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.93 E-value=9e-10 Score=110.76 Aligned_cols=123 Identities=20% Similarity=0.080 Sum_probs=89.1
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC----CEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE----GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~----~VhVvT~NdyLA~RDae~~~~~y~-~LGLtv 74 (711)
.+++|.-+...+.+|+ ++...||+|||..+.++++-..+. |+ ++.++.|+..||.+-++.+...+. .+|..+
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 4789999999999998 889999999999888887644442 33 788899999999999888766553 457777
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+...... .+...-.++|+++|++.+ .+.|+. ..+ ++.++||||||.+.+|.
T Consensus 142 g~~~~~~---~~~~~~~~~Ivv~Tpg~l-~~~l~~---------~l~---~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 142 GYSVRFE---SILPRPHASIMFCTVGVL-LRKLEA---------GIR---GISHVIVDEIHERDINT 192 (235)
T ss_dssp EEEETTE---EECCCSSSEEEEEEHHHH-HHHHHH---------CCT---TCCEEEECCTTSCCHHH
T ss_pred EEeechh---hccCCCCCeEEEECHHHH-HHHHHh---------hhc---CCcEEEEECCccCCcch
Confidence 7543221 111123578999999877 344432 144 89999999999863343
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.87 E-value=4.9e-09 Score=106.25 Aligned_cols=110 Identities=21% Similarity=0.086 Sum_probs=85.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt-v~~i~ 78 (711)
.|+|.|..+...+.+++ |+.+.||.|||+++..++.. .+..+.|++|+..|+.+-.+.+.. +|++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v~~~~ 165 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG----GCGGGEEEES
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeEEEEe
Confidence 57899999999887765 89999999999998887752 288999999999999875555544 5899 88887
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.. ..++|+++|...+ ...+. .... .++++||||+|.+.
T Consensus 166 g~~~-------~~~~i~v~T~~~l-----~~~~~-----~~~~---~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 166 GRIK-------ELKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (237)
T ss_dssp SSCB-------CCCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEECSSCCC
T ss_pred CCCC-------CcCCEEEEeHHHH-----HhhHH-----Hhcc---cCCEEEEECCccCC
Confidence 7653 3679999996543 22221 1223 68999999999974
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.84 E-value=1.2e-08 Score=105.91 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=73.7
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCcc-EEEE
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYA-ITIS 409 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~-VTIA 409 (711)
.....|+.++.+.+.+..+.|.+|||||.+....+.|...|.+. |+++..+++.+...+|++.+-. +.|.... +.|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34568999998888887788999999999999999999999985 9999999998766677766655 5663444 7899
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+.+|+|+|+.
T Consensus 172 t~~~g~Glnl~ 182 (271)
T 1z5z_A 172 VKAGGFGINLT 182 (271)
T ss_dssp CCTTCCCCCCT
T ss_pred hhhhcCCcCcc
Confidence 99999999984
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.92 E-value=2.1e-05 Score=90.64 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+|+|-|.--+- ++.+|+ ++|+.||.|||+++++|+...+. .|.+|.|+|++..|+.|-.+++..+-...++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 57788866554 456676 99999999999999999975443 488999999999999999999999988889998
Q ss_pred EEEcC
Q 005155 75 GLIQR 79 (711)
Q Consensus 75 ~~i~~ 79 (711)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 87665
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.23 E-value=0.00033 Score=80.45 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=56.6
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHH--HHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKT--LVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKT--Lva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+.|..++...+.++ ++.-.+|+||| ++++++++ ..+ .|..|.+++||..+|.|-.+.++.....+|++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l-~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH-HHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-HHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 467999998887777 88889999999 45556654 333 466899999999999999999998888888763
No 95
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.25 E-value=0.22 Score=58.05 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=68.3
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHH-HHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAY-LNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~-l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-|-|.-++-. .+|. ++...-|+|||.+.+--+. +..-.| ..+.+||.|.-.|..-.+.+..+ +|-.
T Consensus 13 n~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~---l~~~----- 83 (724)
T 1pjr_A 13 NKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL---LGGA----- 83 (724)
T ss_dssp CHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH---HGGG-----
T ss_pred CHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---hccc-----
Confidence 4567665543 3566 8899999999987765443 222123 57999999998777544444433 2211
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|....||.....- -- +.+|-|+|+.|..
T Consensus 84 ------------~~~~~v~Tfhs~~~~ilr~~~~~~-----g~---~~~f~i~d~~d~~ 122 (724)
T 1pjr_A 84 ------------AEDVWISTFHSMCVRILRRDIDRI-----GI---NRNFSILDPTDQL 122 (724)
T ss_dssp ------------GTTSEEEEHHHHHHHHHHHHGGGG-----TC---CTTCEECCHHHHH
T ss_pred ------------ccCcEEeeHHHHHHHHHHHHHHHh-----CC---CCCCEECCHHHHH
Confidence 124788999999998888754321 11 4568899998863
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.17 E-value=1.6 Score=49.33 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=68.7
Q ss_pred hhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc-C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT-G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~-G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+-|.-++-. .+|. ++...-|+|||.+.+--+....-. | ..+.++|+|.-.|..-.+.+..+ +|-.
T Consensus 12 ~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~---~~~~------ 81 (647)
T 3lfu_A 12 DKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL---MGTS------ 81 (647)
T ss_dssp HHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH---HCSC------
T ss_pred HHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH---hccc------
Confidence 456655542 2455 889999999998766544322223 2 58999999999998666665544 3321
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...+.++|...|....|+...... -- +.++-|+|+.|..
T Consensus 82 -----------~~~~~v~Tfhs~~~~il~~~~~~~-----~~---~~~~~i~~~~~~~ 120 (647)
T 3lfu_A 82 -----------QGGMWVGTFHGLAHRLLRAHHMDA-----NL---PQDFQILDSEDQL 120 (647)
T ss_dssp -----------CTTCEEEEHHHHHHHHHHHTTGGG-----TC---CTTCEEECHHHHH
T ss_pred -----------cCCcEEEcHHHHHHHHHHHHHHHh-----CC---CCCCEEeCHHHHH
Confidence 135888999999988888653211 11 3467888988764
No 97
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.10 E-value=0.069 Score=61.48 Aligned_cols=109 Identities=26% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHH-HHHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAA-YLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa-~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
|...|-|.-++-.. +|. ++...-|+|||.+.+--+ ++..-.| ..+.+||.|.-.|..-.+.+... +|-.
T Consensus 1 ~~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~---l~~~-- 74 (673)
T 1uaa_A 1 MRLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT---LGRK-- 74 (673)
T ss_dssp -CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH---SCTT--
T ss_pred CCCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---cCcc--
Confidence 45567787766543 555 788999999998766443 3222123 68999999999988555554433 3321
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-..++.++|...|...+|+..... .-. +.+|-|+|+.|..
T Consensus 75 --------------~~~~~~v~Tfhs~~~~il~~~~~~----~g~----~~~~~i~d~~~~~ 114 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDIIKREYAA----LGM----KANFSLFDDTDQL 114 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHHHHHHHHH----TTC----CCCCCEECHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHHHHHHHHH----hCC----CCCCEEeCHHHHH
Confidence 012588899999999988875321 111 3456788988764
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.49 E-value=0.15 Score=58.46 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+. +....+..|.|+++|..-|.+-.+.+.
T Consensus 183 ~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 183 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 56777776655544 7888899999976543332 222268899999999988877766654
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.76 E-value=0.21 Score=57.29 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=40.6
Q ss_pred hhHHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 5 dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
+-|..|+...+ ... |++=.-|+|||-|.+-.++...-.|+.|.|+|+|..=+..-.+.+
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHH
Confidence 45777777544 343 777789999997655444433457999999999977665554444
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.27 Score=58.34 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+ .+....+..|.|+|+|..-|.+-.+.+..
T Consensus 363 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 363 SSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 56888877776655 889999999997644333 33334789999999999888877776654
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.95 E-value=0.27 Score=58.34 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+ .+....|..|.|+++|.--|.+-.+.+.
T Consensus 359 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 359 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp HHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 56777777655555 788899999997644333 2222368899999999988877666654
No 102
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.08 E-value=0.17 Score=49.57 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.|.|||..++-.+.-..-.|+.|.+++|.
T Consensus 17 mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 47799977666665344589999999976
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=90.75 E-value=0.99 Score=49.08 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.++|-|.--.-.+... .++++.-+-|||.+++..++..++. |..|.++.++..-|+.-++.+.++++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 3556665433333322 3899999999997655555445554 55799999999999988888888887654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=90.71 E-value=0.83 Score=51.97 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+++|-|.--.-.+...+ ++++.-|.|||.+++..+.+.++. |..|.++.++...|+.-++.+.++++.++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 45677754443444444 899999999997655444445554 34699999999999999888888887664
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.65 E-value=0.23 Score=47.99 Aligned_cols=30 Identities=20% Similarity=0.022 Sum_probs=21.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
..|.|||..+.-.+.-....|+.|.++++.
T Consensus 11 ~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 348899987655554334578899999987
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.73 E-value=0.56 Score=53.45 Aligned_cols=60 Identities=20% Similarity=0.074 Sum_probs=44.2
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
-+-|..++-.+..+. +..=.-|+|||.++.-.+....-.|..|.+++||.-.|++-.+..
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 467888877776655 677789999997544433334457999999999999998766543
No 107
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.35 E-value=4.8 Score=39.79 Aligned_cols=36 Identities=31% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
+|. ++--..|-|||-+|+-.++-.+-.|.+|.|+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 454 333445666776554444434558999999954
No 108
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.26 E-value=2.6 Score=43.72 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=32.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
-+.|+|||-++...+.+.+-.|+.|.++...-+-+... +++..+.+.+|+.+-
T Consensus 105 g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-~ql~~~~~~~~l~~~ 157 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQLRLLGEKVGVPVL 157 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-HHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-HHHHHhcccCCeEEE
Confidence 46899998766666656677899999988654322111 223334445566554
No 109
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.25 E-value=2.2 Score=47.13 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=35.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
=.+|+|||-++.-.+...+-.|+.|.+++...|=+. ..+++..+.+..|+.+..
T Consensus 104 G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~-a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 104 GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA-AYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHH-HHHHHHHHHHTTTCCEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchh-HHHHHHHHHHhcCCceee
Confidence 358999987655555545678999999986544321 234555566677776553
No 110
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.13 E-value=2 Score=47.61 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=35.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.+|+|||.+++-.+...+-.|+.|.+++.-.|=+. -.+++....+..|+.+..
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a-a~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG-AYHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH-HHHHHHHHHGGGTCEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh-HHHHHHHHHHhcCCcEEe
Confidence 48999987544444435668999999986544331 245666666777887653
No 111
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.46 E-value=1.8 Score=45.41 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=32.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+|+|||.++...+.+.+-.|+.|.++....+=+. -.+++....+.+|+.+
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-AIEQLKIWGERVGATV 162 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHHHHHHHHHHTCEE
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-HHHHHHHHHHHcCCcE
Confidence 48999997666666556778999999886543211 1233444455667765
No 112
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.39 E-value=1.6 Score=50.42 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHH----hCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 2 RHFDVQIIGGAVL----HDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 2 rp~dvQl~g~~~L----~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
.|..-|.-++-.| .+|. +..-.||+|||++++-. +..+ ++++.|||+|..+|.+-++++..|+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~--~~~~-~~~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNL--IKEV-NKPTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH--HHHH-CCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHH--HHHh-CCCEEEEECCHHHHHHHHHHHHHHc
Confidence 4667776554433 3452 56788999999765432 2333 6789999999999999999988886
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.04 E-value=0.42 Score=48.12 Aligned_cols=30 Identities=13% Similarity=-0.188 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+|.|||..+.-.+.-.+-.|..|.++++.-
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 588999776666654445788999997643
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.46 E-value=5.5 Score=43.52 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=36.3
Q ss_pred hhHHHHHHHHh------CCC-eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHH
Q 005155 5 DVQIIGGAVLH------DGS-IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 5 dvQl~g~~~L~------~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae 61 (711)
+-|..+.-.+. +|. ++.-..|+|||.++...+....-.|. .|.++|+|.-.|+.-.+
T Consensus 28 ~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 45666665442 223 88889999999654333322222454 89999999887765443
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=78.71 E-value=1.4 Score=44.31 Aligned_cols=47 Identities=21% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 25 GEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
|.|||..++-.+.-..-.|+.|.|++|.-- .|..+ ..+.+.+|+++-
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge--~~i~s~~g~~~~ 84 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSE--EDVVSHNGLKVK 84 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CC
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchH--HHHHhhcCCeeE
Confidence 559998777767644568999999997532 33222 235555566543
No 116
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=78.38 E-value=1.8 Score=45.97 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=27.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+.--+-|+|||.+++-.|+..|-.|++|.+|...
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4555899999987666666678899999999987
No 117
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=78.31 E-value=2 Score=41.39 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=24.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|+--++|+|||.+++-.++..|..|++|.++
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4556899999987666666567889999875
No 118
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.84 E-value=1.7 Score=43.85 Aligned_cols=53 Identities=21% Similarity=0.108 Sum_probs=27.0
Q ss_pred EEecCC---CcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 20 AEMKTG---EGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 20 aEm~TG---EGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.++-|| .|||..++-.+.-....|+.|.|++|.- -.|..+ ..+..-+|++.-+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~--D~R~~~--~~I~Sr~G~~~~a 85 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI--DDRYHK--EKVVSHNGNAIEA 85 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc--CCcchh--hhHHHhcCCceee
Confidence 344455 6999655444543345789999999843 133222 2455666666543
No 119
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=77.37 E-value=6.7 Score=48.53 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=70.0
Q ss_pred CchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHcCC------CEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 005155 3 HFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALTGE------GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~------~VhVvT~NdyLA~RDae~~~~~y~-~LGLtv 74 (711)
..+-|..++-.- .+. ++...-|+|||-|.+--+.-....|. .+.|+|.|...|..-.+.+..... .++-
T Consensus 11 ~t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~-- 87 (1232)
T 3u4q_A 11 WTDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ-- 87 (1232)
T ss_dssp CCHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc--
Confidence 366677665544 333 89999999999887765543333443 799999996666555444443221 1111
Q ss_pred EEEcCCCCHH-HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPE-ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~-~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++ +.. .+...--..+.++|...|....|+.+... ... +.+|-|+||.+.-+
T Consensus 88 ---~~~-~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~----~~~----~~~f~~~d~~~~~~ 140 (1232)
T 3u4q_A 88 ---RPG-SLHIRRQLSLLNRASISTLHSFCLQVLKKYYYL----IDL----DPGFRIADQTEGEL 140 (1232)
T ss_dssp ---STT-CHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGG----TTC----CTTCEECCHHHHHH
T ss_pred ---Ccc-hHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHh----cCC----CCCCeeCCHHHHHH
Confidence 011 111 11222234567799999988888765432 111 23445888876443
No 120
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.93 E-value=3.1 Score=41.59 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
|+--+.|+|||.+++-.|+..|..|+.|.+|=...
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45568999999876666666778899999987543
No 121
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.55 E-value=12 Score=40.97 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=33.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
-++|+|||.+++-.|+..+.. |+.|.++....+-+.- .+++.......|+.+-.
T Consensus 107 G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a-~~ql~~~~~~~~l~v~~ 161 (433)
T 2xxa_A 107 GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA-IKQLETLAEQVGVDFFP 161 (433)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH-HHHHHHHHHHHTCEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH-HHHHHhhcccCCeeEEe
Confidence 468999997555545445777 9999999887543211 12233334556776643
No 122
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=71.46 E-value=3.4 Score=40.11 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=25.3
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+-.+.|+|||.+++-.+...|..|++|.+|-.+
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 445799999987666666567789999998654
No 123
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.48 E-value=10 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
-.+|+|||.++...+.+.+-.|+.|.++...-
T Consensus 105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 36899999766666655677899999998754
No 124
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.53 E-value=3.6 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=25.6
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
--+-|+|||.+++-.++..|..|+.|.+|-.+
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34789999987666666677899999999876
No 125
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=69.51 E-value=4.2 Score=42.10 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=26.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+.|+|||.+++-.|...|..|++|.+|-.+
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4455789999987666666678899999999653
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.42 E-value=3.5 Score=42.30 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.1
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+..++||||+|.+-
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999973
No 127
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=69.30 E-value=4.5 Score=40.00 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=25.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
|+-.+.|.|||.+++-.|+..|..|+.|.+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 445689999998766666656778999999854
No 128
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=69.09 E-value=4 Score=40.08 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=25.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|+-.+.|.|||.+++-.|...|-.|++|.+|=.+
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3445899999987666666567789999988654
No 129
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.47 E-value=10 Score=39.38 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=25.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
=.+|+|||-++...+...+..|+.|.++....+
T Consensus 105 G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 105 GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378999987666555556778999999987643
No 130
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.42 E-value=13 Score=39.09 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=23.6
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.+|+|||-++...+.+.+-.|+.|.++...-
T Consensus 113 ~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4999999766555555677899999987654
No 131
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=68.31 E-value=5.5 Score=41.50 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=27.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.--+.|+|||.+++-.|+..|-.|++|.+|....
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 55668999999876666665788899999999864
No 132
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=67.89 E-value=16 Score=33.57 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.|.-++....+.++.|.+++..-+..-++. +...|+++..+.++|++.+|.... ..+|+++|.
T Consensus 25 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 25 LLKDVLMTENPDSCIIFCRTKEHVNQLTDE----LDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp HHHHHHHHHCCSSEEEECSSHHHHHHHHHH----HHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHHhcCCCcEEEEECCHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 344445667888999999998766655544 455699999999999988887543 357888883
No 133
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=67.86 E-value=4.2 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+.|+|||.+++-.|...|..|++|.+|-.+
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3345689999987666666678899999998554
No 134
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=67.69 E-value=14 Score=34.47 Aligned_cols=62 Identities=26% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
|..++..+.+.++.|.+++..-+..-++. +...|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 22 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 22 LFDLLDVLEFNQVVIFVKSVQRCIALAQL----LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp HHHHHHHSCCSSEEEECSSHHHHHHHHHH----HHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHHH----HHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 34445667888999999998776655544 445699999999999988887543 358888884
No 135
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=66.98 E-value=4.4 Score=41.23 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=26.9
Q ss_pred CCeEEecCC---CcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 17 GSIAEMKTG---EGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 17 G~IaEm~TG---EGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
|+ .++-|| .|||..++-.++-....|+.|.|++|.-- .|.. ..+.+.+|+++-
T Consensus 19 g~-l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~Ryg---~~i~sr~G~~~~ 74 (234)
T 2orv_A 19 GQ-IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--TRYS---SSFCTHDRNTME 74 (234)
T ss_dssp CE-EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--CCC--------------CE
T ss_pred eE-EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--ccch---HHHHhhcCCeeE
Confidence 54 444455 59997766666644567999999997531 2211 345555566644
No 136
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=66.90 E-value=16 Score=33.72 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
|..++....+.++.|.+++..-+..-++.+ ...|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 21 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKL----RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHH----HHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344456678889999999987776555544 45699999999999988887543 357888883
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.99 E-value=3 Score=38.60 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.8
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+.+++||||++++
T Consensus 83 ~~~lLilDE~~~~ 95 (149)
T 2kjq_A 83 EAEYLAVDQVEKL 95 (149)
T ss_dssp GCSEEEEESTTCC
T ss_pred CCCEEEEeCcccc
Confidence 4679999999984
No 138
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=65.94 E-value=18 Score=31.09 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcCCcEEEEec--chhhHHHHHHHHHHCCCCeEEEeCC-Cc-chHhHHHHHHhcCC
Q 005155 342 ARQEVESMFRLGRPVLVGST--SVENSEYLSDLLKQQGIPHNVLNAR-PK-YAAREAETVAQAGR 402 (711)
Q Consensus 342 Ii~ei~~~~~~grPVLV~t~--Si~~SE~Ls~~L~~~gi~~~vLnA~-~~-~~~~Ea~Iia~AG~ 402 (711)
|.+-|+.+..+|.|..||.+ |..+...+...-++.|+...||... |+ -..+-.+..+.||.
T Consensus 40 irdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktags 104 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhccc
Confidence 45556777789999999986 5677888999999999999999874 11 12334567777773
No 139
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=65.93 E-value=5.5 Score=41.69 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=28.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.--+.|+|||.+++..|...|-.|++|.+|....
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56668999999876666666778899999999874
No 140
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=65.67 E-value=11 Score=35.06 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.|.-++..+.+.++.|.+++..-+..-++. +...|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVE----MIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHH----HHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 333444556678899999998877655554 445699999999999998887553 358888884
No 141
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=65.41 E-value=32 Score=32.36 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=56.6
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCC
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnm 412 (711)
.+..+....|++.|.+......-+-|.|++-.+++.+.+.|.+.|+++.+++... . ...+.|+|.|=-
T Consensus 41 ~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~--~----------~~~~~v~v~t~~ 108 (174)
T 3dmn_A 41 PNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN--Q----------RLAPGVIVVPSF 108 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGG
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccc--c----------ccCCCeEEEEcc
Confidence 4556667778888877223345599999999999999999999999999887631 0 125689999977
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
...|.-+.
T Consensus 109 ~~KGlEf~ 116 (174)
T 3dmn_A 109 LAKGLEFD 116 (174)
T ss_dssp GCTTCCEE
T ss_pred ccCCcCCC
Confidence 77776553
No 142
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=65.32 E-value=4.7 Score=39.19 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~Nd 53 (711)
+.-.+-|+|||.+++-.|...|.. |++|.+|=.+.
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 455688999998766666656777 99999986643
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=65.06 E-value=24 Score=36.63 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=11.8
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||||.|
T Consensus 108 ~~kvviIdead~l 120 (334)
T 1a5t_A 108 GAKVVWVTDAALL 120 (334)
T ss_dssp SCEEEEESCGGGB
T ss_pred CcEEEEECchhhc
Confidence 5789999999997
No 144
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=64.38 E-value=5.6 Score=41.02 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=27.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+.|+|||.+++-.|...|..|++|.+|-..
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 5556889999987776666678889999998664
No 145
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=64.37 E-value=3.9 Score=40.72 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=25.8
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
-.+.|+|||.+++..|...|..|++|.+|=...
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 457899999876666666678899999997653
No 146
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=64.36 E-value=5.2 Score=40.45 Aligned_cols=30 Identities=27% Similarity=0.187 Sum_probs=23.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
-+-|.|||.+++-.|+..|..|++|.+|=.
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rVlliD~ 38 (289)
T 2afh_E 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGC 38 (289)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 388999998766666656778999988743
No 147
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=64.00 E-value=6.9 Score=41.34 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.--+.|+|||.+++-.|...|-.|++|.+|....
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56668999999876666666788899999999764
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=63.71 E-value=8.1 Score=36.83 Aligned_cols=35 Identities=9% Similarity=-0.102 Sum_probs=20.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+..=.+|.|||..+-..+-...-.|..|..++.++
T Consensus 56 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 66678999999765443322223355666555533
No 149
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=63.70 E-value=5.2 Score=40.68 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+-.+.|.|||.+++-.+...|..|++|.+|=...
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3457899999876666666678899998885543
No 150
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=63.32 E-value=22 Score=34.40 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 35 AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 35 pa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.-++....+..+.|.|++..-+. ++...+...|+.+..+.++|++.+|.... ..+|+++|+
T Consensus 23 ~~ll~~~~~~~~lVF~~~~~~~~----~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 23 SDLLYVASPDRAMVFTRTKAETE----EIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HHHHHHHCCSCEEEECSSHHHHH----HHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHhCCCCeEEEEeCCHHHHH----HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 33445667889999999876555 44444555699999999999988877553 357999995
No 151
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=62.34 E-value=5.5 Score=39.53 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=23.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
-+-|.|||.+++-.|+..|..|++|.+|=.
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence 378999998776666666788999988744
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.16 E-value=18 Score=37.02 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=11.4
Q ss_pred ccEEEeechhhhh
Q 005155 126 FHFAIVDEVDSVL 138 (711)
Q Consensus 126 ~~~aIVDEvDs~L 138 (711)
..++||||+|.+.
T Consensus 129 ~~vlilDE~~~l~ 141 (386)
T 2qby_A 129 QVVIVLDEIDAFV 141 (386)
T ss_dssp CEEEEEETHHHHH
T ss_pred eEEEEEcChhhhh
Confidence 5689999999985
No 153
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=61.24 E-value=7.2 Score=39.75 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|+ -+-|+|||.+++-.|+..|-.|++|.+|=..
T Consensus 46 v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 46 VY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp EE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56 6999999987666666667789999998554
No 154
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=61.21 E-value=7.7 Score=39.22 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=25.0
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.+-|.|||.+++-.|+..|..|++|.+|=...
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~ 75 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 47799999876666666778999999886654
No 155
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.18 E-value=18 Score=40.59 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=31.4
Q ss_pred ecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 22 MKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 22 m~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
=.+|+|||-+ ..|+.+ .+-.|+.|.+|+...|=+ ...+|+.......|+.+.
T Consensus 108 G~~GvGKTTl~~kLA~~-l~~~G~kVllVd~D~~r~-aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 108 GLQGSGKTTTCSKLAYY-YQRKGWKTCLICADTFRA-GAFDQLKQNATKARIPFY 160 (504)
T ss_dssp CSTTSSHHHHHHHHHHH-HHHTTCCEEEEEECCSSS-HHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHH-HHhCCCeEEEEeccccch-hHHHHHHHHhhccCceEE
Confidence 3589999854 555544 456799999998743211 112444444455566654
No 156
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=61.13 E-value=4.9 Score=39.97 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
|+-.+-|+|||.+++-.|+..| .|++|.+|-.+..
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4456899999987666666567 8999999977643
No 157
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=59.87 E-value=4.3 Score=39.32 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=24.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+-|+|||.+++-.|...|..|++|.+|--..
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7899999876666666778899999987653
No 158
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=59.65 E-value=5.9 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=12.7
Q ss_pred eEEecCCCcHHHHHHHH
Q 005155 19 IAEMKTGEGKTLVSTLA 35 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lp 35 (711)
+..=.+|.|||.++-..
T Consensus 71 ll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKM 87 (309)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 66778999999765433
No 159
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.52 E-value=6.7 Score=40.43 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.7
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
...+++|||+|.+.
T Consensus 130 ~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 130 GIYIIVLDEIDFLP 143 (387)
T ss_dssp SEEEEEEETTTHHH
T ss_pred CeEEEEEccHhhhc
Confidence 35689999999985
No 160
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=57.96 E-value=6.8 Score=40.64 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=10.0
Q ss_pred EEEeechhhhh
Q 005155 128 FAIVDEVDSVL 138 (711)
Q Consensus 128 ~aIVDEvDs~L 138 (711)
++||||+|.+.
T Consensus 136 vlilDEi~~l~ 146 (384)
T 2qby_B 136 IIYLDEVDTLV 146 (384)
T ss_dssp EEEEETTHHHH
T ss_pred EEEEECHHHhc
Confidence 99999999974
No 161
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=57.76 E-value=8.7 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
++-.+-|.|||.+++-.|...|..| +|.+|-...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 3456889999987666666567789 999986553
No 162
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=57.35 E-value=10 Score=42.82 Aligned_cols=35 Identities=31% Similarity=0.277 Sum_probs=28.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+.--+.|+|||.+++-.|+..|-.|++|.+|....
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 55667999999877776666788899999999874
No 163
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=57.22 E-value=36 Score=38.91 Aligned_cols=128 Identities=9% Similarity=0.027 Sum_probs=65.2
Q ss_pred hcCccccccCCcccHHHHHHHHcCCC--eEEeCCCCCcccc------cCCCeEEeC-hhHHHHHHHHHHHHhh-hcCCcE
Q 005155 287 LYPKLSGMTGTAKTEEKEFLKMFQMP--VIEVPTNLPNIRV------DLPIQSFAT-ARGKWEYARQEVESMF-RLGRPV 356 (711)
Q Consensus 287 ~Y~kl~GmTGTa~te~~Ef~~iY~l~--vv~IPt~~p~~R~------d~~d~i~~t-~~~K~~aIi~ei~~~~-~~grPV 356 (711)
....+.-+|||+.. -+.|.+.-|++ .+.+|+-.|.... +.| ..|.. ..+-+.++.+.+.+.. ..+-.+
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~i~~l~~~~~g~~ 451 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVS-SKYDTLDEKELDRMATVIEDIILKVKKNT 451 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCSCGGGEEEEEECCC--------CHHHHHHHHHHHHHHHHHHCSCE
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCCCCHHHeEEEEeCCCC-CcCCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 44556677888875 45555666664 3456654443221 111 11111 1223455666555543 234469
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcC--CCcCCccee
Q 005155 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN--MAGRGTDII 420 (711)
Q Consensus 357 LV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATn--mAGRGTDIk 420 (711)
|||++|-..-+.+++.|+ .+... +.-++...+++.-+-.-. ..|+|.++|- -..-|+|+.
T Consensus 452 lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~ 513 (620)
T 4a15_A 452 IVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFP 513 (620)
T ss_dssp EEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC-------
T ss_pred EEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCC
Confidence 999999999999988876 23333 211111123333333323 4789999974 889999997
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=56.36 E-value=8.1 Score=38.55 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=12.3
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+..+++|||+|.++
T Consensus 124 ~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 124 QLSCVVVDDIERLL 137 (272)
T ss_dssp SEEEEEECCHHHHT
T ss_pred CCcEEEEEChhhhh
Confidence 56899999999985
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=55.04 E-value=13 Score=41.55 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=42.3
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcce
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDI 419 (711)
.|..|+|.|.|....+.|.+.|.+.|++....+. ..+ . .+|.|.|+.--..+|--.
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-----~~~------~-~~g~v~i~~g~L~~GF~~ 436 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-----LDE------A-SDRGRYLMIGAAEHGFVD 436 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-----GGG------C-CTTCEEEEESCCCSCEEE
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-----hhh------c-CCCcEEEEEcccccCccc
Confidence 4678999999999999999999999998654322 111 1 467888888777788643
No 166
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=54.90 E-value=11 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=27.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHH--HcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA--LTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A--L~G~~VhVvT~N 52 (711)
+.--+.|+|||.+++-.|+..| -.|++|.+|...
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 5556899999977666665567 789999999986
No 167
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=54.43 E-value=36 Score=35.29 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
|.-++....+..+.|.|++..-+. .+...+...|+.+..+.++|++.+|.... ..+|+++|+
T Consensus 19 L~~ll~~~~~~~~LVF~~t~~~~~----~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 19 LSDLLYVASPDRAMVFTRTKAETE----EIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp HHHHHHHHCCSSEEEECSSHHHHH----HHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred HHHHHHhcCCCCEEEEECCHHHHH----HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 344456667999999999976554 44555566799999999999988777554 468999996
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=52.54 E-value=38 Score=35.02 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=23.7
Q ss_pred CCCe--EEecCCCcHHHHHHHHHHHHHHc------CCCEEEEecCHH
Q 005155 16 DGSI--AEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDY 54 (711)
Q Consensus 16 ~G~I--aEm~TGEGKTLva~Lpa~l~AL~------G~~VhVvT~Ndy 54 (711)
.|.+ .--.+|.|||..+.-.++-.++. |.+|..++...-
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4553 44569999997655555422333 667777766543
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.14 E-value=21 Score=36.82 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=25.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecC--HHHHHHHHHHHHHHhhhcCC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVN--DYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~N--dyLA~RDae~~~~~y~~LGL 72 (711)
+..=.+|.|||..+-.. ...+... ++.++..| +... ....+..++..+|.
T Consensus 48 li~G~~G~GKTtl~~~l--~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 48 TLLGRPGTGKTVTLRKL--WELYKDKTTARFVYINGFIYRN--FTAIIGEIARSLNI 100 (389)
T ss_dssp EEECCTTSSHHHHHHHH--HHHHTTSCCCEEEEEETTTCCS--HHHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHH--HHHHhhhcCeeEEEEeCccCCC--HHHHHHHHHHHhCc
Confidence 45667999999765432 2455544 34444433 2211 12234455555654
No 170
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.89 E-value=18 Score=38.28 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=11.7
Q ss_pred CccEEEeechhhhhh
Q 005155 125 PFHFAIVDEVDSVLI 139 (711)
Q Consensus 125 ~~~~aIVDEvDs~Li 139 (711)
...+++|||+|+++-
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 346999999999863
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=50.53 E-value=11 Score=39.78 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=12.0
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
..-++++||+|.+.
T Consensus 132 ~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 132 RKTLILIQNPENLL 145 (318)
T ss_dssp CEEEEEEECCSSSC
T ss_pred CceEEEEecHHHhh
Confidence 56789999999985
No 172
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=49.25 E-value=32 Score=33.65 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 005155 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (711)
Q Consensus 633 ~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~ 677 (711)
..|+..|..++..+-+..+.+++...--+..|+-+|..|+.|+.+
T Consensus 3 ~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~ 47 (193)
T 3kyp_A 3 QDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQK 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcC
Confidence 468899999999999999999999999999999999999999965
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=47.73 E-value=71 Score=34.68 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=59.3
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHH
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEER 86 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~N---dyLA~RDae~~~~~y~~LGLtv~~i-~~~~~~~~r 86 (711)
+..|. +.--.+|.|||..+.-.+...+. .|..|.+++.. ..|..|-.. ..+|+....+ .+.++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~------~~~~~~~~~l~~g~l~~~~~ 273 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLC------AEGNINAQNLRTGKLTPEDW 273 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHH------HHHTCCHHHHHTSCCCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHH
Confidence 34566 56678999999766655554444 47789988754 233333211 1223322111 123444332
Q ss_pred Hhc-------cCCCeEEECCCchhhHHHHHhhhcchhhhh-cCCCCCccEEEeechhhhh
Q 005155 87 RSN-------YRCDITYTNNSELGFDYLRDNLAANSEQLV-MRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 87 ~~a-------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v-~r~~R~~~~aIVDEvDs~L 138 (711)
... ...++..-..+.+..+-++..+.. .+ .. ++.++|||+...|.
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~----l~~~~---~~~livID~l~~~~ 326 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRR----LKQES---GLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHH----HHTTT---CCCEEEEECGGGSC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH----HHHHc---CCCEEEEccHHHhc
Confidence 211 123455444445555555543321 11 12 68899999999875
No 174
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.32 E-value=54 Score=34.35 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=43.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHH---CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~---~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn 411 (711)
..|..+||.+++.+-+..+.+.+++ .|+++..++++....+++..+-. ..| ...|.|+|.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECH
Confidence 5678899999999999999999988 68899999987443333322222 233 357889883
No 175
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=47.19 E-value=53 Score=33.84 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 30 LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 30 Lva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
....+..++....+.++.|++++..-|..-++. +...|+.+..+.++|++++|.... ..+|+++|.
T Consensus 253 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAE----LSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp HHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHH----HHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHH----HHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 344455555677889999999998776655544 445599999999999998887654 468999985
No 176
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=47.02 E-value=12 Score=34.63 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=11.3
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..+++|||+|.+
T Consensus 102 ~~~vliiDe~~~l 114 (226)
T 2chg_A 102 PFKIIFLDEADAL 114 (226)
T ss_dssp SCEEEEEETGGGS
T ss_pred CceEEEEeChhhc
Confidence 5679999999986
No 177
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=46.88 E-value=34 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.6
Q ss_pred hcC-CcEEEEe-cchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLG-RPVLVGS-TSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~g-rPVLV~t-~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+. +||+|.| .+-..|...+..|+..|+...+|+++
T Consensus 86 ~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG 123 (134)
T 3g5j_A 86 ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGG 123 (134)
T ss_dssp HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTH
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCc
Confidence 355 9999999 68888999999999999977777774
No 178
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=46.77 E-value=24 Score=35.34 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~el 102 (711)
.+|.|||..+-..+- .+.+..++...+++
T Consensus 62 p~GtGKT~la~~la~---------------------------------------------------~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 62 PPGNGKTLLARAVAT---------------------------------------------------ECSATFLNISAASL 90 (297)
T ss_dssp SSSSCHHHHHHHHHH---------------------------------------------------HTTCEEEEEESTTT
T ss_pred cCCCCHHHHHHHHHH---------------------------------------------------HhCCCeEEeeHHHH
Q ss_pred -------hhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 103 -------GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 103 -------gfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+-..++..+..-... ...++++||+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-------~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHM-------QPSIIFIDEVDSLL 126 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHT-------CSEEEEEETGGGTS
T ss_pred hhcccchHHHHHHHHHHHHHHc-------CCcEEEeccHHHhc
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=45.67 E-value=36 Score=32.55 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=12.5
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+.+++||||..+++
T Consensus 119 ~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 119 RYALLIVDSATALY 132 (243)
T ss_dssp CEEEEEEETSSGGG
T ss_pred CceEEEEeCchHHH
Confidence 68899999999986
No 180
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=45.21 E-value=56 Score=36.43 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=69.6
Q ss_pred Hhhhc-CccccccCCcccHHHHHHHHcCCC--eE------EeCCCCCcccc-----cCCCeEEeC-hhHHHHHHHHHHHH
Q 005155 284 LFKLY-PKLSGMTGTAKTEEKEFLKMFQMP--VI------EVPTNLPNIRV-----DLPIQSFAT-ARGKWEYARQEVES 348 (711)
Q Consensus 284 ~F~~Y-~kl~GmTGTa~te~~Ef~~iY~l~--vv------~IPt~~p~~R~-----d~~d~i~~t-~~~K~~aIi~ei~~ 348 (711)
+|... ..+.-+|||+.. -..|.+..|++ .. .+|+..+..+. +.|. -|.. ..+-+.++.+.+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~-~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTS-KYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCC-CTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCC-ccccCCHHHHHHHHHHHHH
Confidence 44555 566677888865 45566677775 21 13432211110 0110 0111 12335667777766
Q ss_pred hhh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc--CCCcCCcceec
Q 005155 349 MFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST--NMAGRGTDIIL 421 (711)
Q Consensus 349 ~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT--nmAGRGTDIkL 421 (711)
..+ .+-.+|||++|-..-+.+.+. .+.+ ++--. +... ..++.. -.-..++|.+|| .-..-|+|+.=
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~--v~~q~-~~~~-~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLP--KYVES-EDSS-VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSS--EEECC-SSCC-HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCc--EEEcC-CCCC-HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 543 344799999999999888862 3444 33221 1111 122332 112246899998 68899999983
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.93 E-value=37 Score=37.63 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=11.6
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
...++||||||.+.
T Consensus 148 ~~~vliIDEid~l~ 161 (516)
T 1sxj_A 148 KHFVIIMDEVDGMS 161 (516)
T ss_dssp TSEEEEECSGGGCC
T ss_pred CCeEEEEECCCccc
Confidence 56799999999873
No 182
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=44.93 E-value=19 Score=38.26 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=26.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHH--HcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA--LTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A--L~G~~VhVvT~N 52 (711)
+.--+-|+|||.+++-.|...| ..|++|++|...
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4445899999976666665567 789999999987
No 183
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=44.85 E-value=15 Score=37.92 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=24.3
Q ss_pred cCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHH
Q 005155 23 KTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY 54 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~Ndy 54 (711)
.+|+|||-++...+...+. .|+.|.+++...+
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 5899999766665555665 7999999987654
No 184
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=44.46 E-value=29 Score=32.63 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 411 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATn 411 (711)
..++.-+++.+.+..+.|..|+|.|.+.+.++.|-+.|-. .-+||++....+ .+++ .|.|++.
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~-----------~~~~--PV~L~~~ 88 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP-----------RGGA--PVEIAWP 88 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS-----------TTCC--SEEEECT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC-----------CCCC--CEEEeCC
Confidence 4567778888988899999999999999999999999965 458998754321 1333 5888875
Q ss_pred CC---c-CCcceecCC
Q 005155 412 MA---G-RGTDIILGG 423 (711)
Q Consensus 412 mA---G-RGTDIkLgg 423 (711)
.. + +.+=|.|+|
T Consensus 89 ~~~~~~~~~vLinL~~ 104 (150)
T 3sxu_A 89 QKRSSSRRDILISLRT 104 (150)
T ss_dssp TSCCCSCCSEEEECCS
T ss_pred CCCCCCcCCEEEECCC
Confidence 42 2 445566665
No 185
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.97 E-value=22 Score=38.95 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=11.2
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
...+++|||+|.+
T Consensus 106 ~~~iLfIDEI~~l 118 (447)
T 3pvs_A 106 RRTILFVDEVHRF 118 (447)
T ss_dssp CCEEEEEETTTCC
T ss_pred CCcEEEEeChhhh
Confidence 4679999999987
No 186
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=42.87 E-value=47 Score=31.34 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 37 YLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 37 ~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
++... .+.++.|.+++..-+..-++. +...|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 39 ll~~~~~~~k~lVF~~~~~~~~~l~~~----L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 39 LLNATGKDSLTLVFVETKKGADSLEDF----LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHC-CCSCEEEEESCHHHHHHHHHH----HHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHH----HHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 34444 477899999998776655544 455699999999999887776543 457888884
No 187
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=42.73 E-value=53 Score=34.22 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
++++.+.||.+.+ .+..........|.|+........ .+.+..+.+.|.+||+ ++.|.++++.+.+..++.|+
T Consensus 66 ~~~~a~~~g~~~~--~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~ 141 (350)
T 3rc1_A 66 AKRFTERFGGEPV--EGYPALLERDDVDAVYVPLPAVLH--AEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGL 141 (350)
T ss_dssp HHHHHHHHCSEEE--ESHHHHHTCTTCSEEEECCCGGGH--HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCc--CCHHHHhcCCCCCEEEECCCcHHH--HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 4556666766543 333333333345666654333222 1233344568999999 68899999999999999998
Q ss_pred CeEEEeCC--CcchHhHHHHHHhcCCCccEEEEc
Q 005155 379 PHNVLNAR--PKYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~~vLnA~--~~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
...+-.-. ......=.+++ ++|.-|.|.-.+
T Consensus 142 ~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~v~ 174 (350)
T 3rc1_A 142 LLMENFMFLHHPQHRQVADML-DEGVIGEIRSFA 174 (350)
T ss_dssp CEEEECGGGGCTHHHHHHHHH-HTTTTCSEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 87653221 00111122333 567788776543
No 188
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=42.65 E-value=13 Score=39.33 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=24.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.+=|+|||.+++-.|+..|..|++|.+|--..
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46799999876666665688999999997653
No 189
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=42.20 E-value=18 Score=37.77 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|=|-|||-+++-.++..|..|++|.+|=.-
T Consensus 56 KGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 56 KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 678999988776666678899999988654
No 190
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=41.89 E-value=75 Score=33.19 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
++++.+.|+..+....+..........|.|+........ .+.+..+.+.|.+||+ ++.|.++++.+.+..++.|.
T Consensus 62 ~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~ 139 (357)
T 3ec7_A 62 AQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH--ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGK 139 (357)
T ss_dssp HHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH--HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH--HHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCC
Confidence 455666666533333333333333345655544333222 1233344568999999 67799999999999999998
Q ss_pred Ce-EEE-eCCC-cchHhHHHHHHhcCCCccEEEEc
Q 005155 379 PH-NVL-NARP-KYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~-~vL-nA~~-~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
.. .+- +-+- .....=.+++ ++|.-|.|...+
T Consensus 140 ~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~v~ 173 (357)
T 3ec7_A 140 RMVQIGFMRRYDKGYVQLKNII-DSGEIGQPLMVH 173 (357)
T ss_dssp CCEEEECGGGGSHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred eEEEEeecccCCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 76 442 2210 0111112333 568888876544
No 191
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=41.62 E-value=59 Score=33.59 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..++....+.++.|++++..-+..-++ .+..+|+.+..+.+++++++|.... ..+|+++|+
T Consensus 248 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~----~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAK----KITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHH----HHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHHhhcCCCcEEEEEecHHHHHHHHH----HHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 34444556678899999999876655444 4455699999999999988887654 358999995
No 192
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.15 E-value=54 Score=33.60 Aligned_cols=63 Identities=25% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..++....++++.|++++..-|..-++.+ ...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 240 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 240 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLL----VEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp HHHHHHHHSCCSEEEEECSCHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 3344456668889999999987776555544 44699999999999988887553 358999995
No 193
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=40.39 E-value=65 Score=30.64 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=41.3
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+.++.|.+++..-+..-++. +...|+++..+.+++++.+|.... .++|+++|.
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~----L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEY----LLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHH----HHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCCCEEEEECCHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 356799999998777655554 445699999999999988887553 468888883
No 194
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=40.37 E-value=82 Score=32.50 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
.+++.+.|+..+....+..........|.|+........ .+.+..+.+.|.+||+ .+.|.++++.+.+..++.|.
T Consensus 41 ~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (344)
T 3mz0_A 41 AQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH--ESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK 118 (344)
T ss_dssp HHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH--HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH--HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence 355666676543333443333333345666544332222 1233344568999999 67799999999999999998
Q ss_pred Ce-EEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 379 PH-NVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~-~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
.. .+-.-. .++. +. .+++ ++|.-|.|...+
T Consensus 119 ~~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 152 (344)
T 3mz0_A 119 RLVQVGFMR-RYDSGYVQLKEAL-DNHVIGEPLMIH 152 (344)
T ss_dssp CCEEECCGG-GGSHHHHHHHHHH-HTTTTSSEEEEE
T ss_pred EEEEEeccc-ccCHHHHHHHHHH-HcCCCCCcEEEE
Confidence 77 442111 1111 12 2333 568888776543
No 195
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=39.96 E-value=28 Score=34.48 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=21.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|+=-.||+|||.+++..+...+-.|..|...
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 4556799999987655554445578777764
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.53 E-value=22 Score=36.66 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=11.5
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.|
T Consensus 110 ~~~viiiDe~~~l 122 (340)
T 1sxj_C 110 GFKLIILDEADAM 122 (340)
T ss_dssp SCEEEEETTGGGS
T ss_pred CceEEEEeCCCCC
Confidence 5789999999987
No 197
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.27 E-value=22 Score=37.60 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
|.-.+-|.|||.+++-.|...|..|++|.+|-..
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3445889999987666665567789999999865
No 198
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=39.08 E-value=18 Score=38.96 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=25.1
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
.--+-|+|||-+++-.|...|..|+.|.+|..
T Consensus 7 ~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 7 FLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 34467999998766666667889999999875
No 199
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=38.95 E-value=59 Score=32.62 Aligned_cols=46 Identities=7% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 005155 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (711)
Q Consensus 632 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~ 677 (711)
-..|...|..++..+-+..+.+++-..--+..++-+|..|+.|+.+
T Consensus 32 l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~ 77 (225)
T 2e50_A 32 IEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhc
Confidence 3457788899999888888999998888899999999999999975
No 200
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=38.59 E-value=59 Score=36.02 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~~ 100 (711)
+..++....|..+.|.+++..-++.-++.+ ...|+.+..+.+++++++|.... ..+|+++|+.
T Consensus 227 l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L----~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARL----QSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred HHHHHHhcCCCcEEEEeCCHHHHHHHHHHH----HHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 333445557889999999987766555554 44699999999999998887654 3589999973
No 201
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=38.10 E-value=44 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.2
Q ss_pred hhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
..+.+||+|.|.+-..|...+..|+..|+. ..+|.++
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG 86 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 86 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCC
Confidence 357789999999999999999999999996 5566653
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=37.60 E-value=40 Score=34.00 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=27.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
++-.+.|.|||-+++-.+...+..|+.|.++....
T Consensus 10 ~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 67789999999876666655677899998887743
No 203
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.48 E-value=21 Score=35.71 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=11.3
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.+
T Consensus 107 ~~~viiiDe~~~l 119 (323)
T 1sxj_B 107 KHKIVILDEADSM 119 (323)
T ss_dssp CCEEEEEESGGGS
T ss_pred CceEEEEECcccC
Confidence 3689999999997
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.30 E-value=28 Score=38.01 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=60.5
Q ss_pred cccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEeC
Q 005155 249 EKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEVP 317 (711)
Q Consensus 249 ~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~IP 317 (711)
|+.+|+| ||..+++. +|-+.. -+.|..+|+.|. -|+|=.||.+|- ++-+..-.+.+++.|-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~--------Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIEL--------PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH--------HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH--------HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 7899998 88876654 444432 245667777653 589999999984 5667777888887664
Q ss_pred CCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 318 TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 318 t~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
...-. .-|..+.+ +.+.++....+...|++||..-+.
T Consensus 215 ~s~l~-------sk~vGese---~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 215 GAELV-------QKYIGEGS---RMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp GGGGS-------CSSTTHHH---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred hHHhh-------ccccchHH---HHHHHHHHHHHHhCCceEeeecch
Confidence 31100 00222222 234444444456789999976444
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.27 E-value=14 Score=40.73 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=60.9
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEe
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (711)
.|+.+|+| ||...++. +|-+. -.+.+..+|+.|. -|+|=.||.+|- ++-+..-.|.+++.|
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~--------~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIE--------LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHH--------HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 46788998 88876553 33322 1245667777663 589999999985 566777888888876
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
....-.. -|..+.+ ..+..+........|++||...+.
T Consensus 247 ~~s~l~s-------k~~Gese---~~ir~~F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 247 PASGIVD-------KYIGESA---RIIREMFAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp EGGGTCC-------SSSSHHH---HHHHHHHHHHHHSCSEEEEEECCC
T ss_pred ehhhhcc-------ccchHHH---HHHHHHHHHHHhcCCceeeeeccc
Confidence 5321100 0223322 234444444456789999976554
No 206
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=36.85 E-value=37 Score=34.36 Aligned_cols=47 Identities=28% Similarity=0.234 Sum_probs=24.2
Q ss_pred chhHHHHHHHHhCCC------eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEe
Q 005155 4 FDVQIIGGAVLHDGS------IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~------IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT 50 (711)
+..-+.|.+..+.|+ |+=..||.|||.+.+..+...+-.|..|...=
T Consensus 10 ~~~~~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 10 HSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp ------------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccchhhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344456666666554 67778999999876554443455788777654
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=36.79 E-value=32 Score=37.39 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=11.9
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
+..+++|||+|.+.
T Consensus 194 ~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 194 KVDILLIDDVQFLI 207 (440)
T ss_dssp TCSEEEEECGGGGS
T ss_pred CCCEEEEeCccccc
Confidence 46799999999975
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=36.64 E-value=23 Score=32.75 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCC--eEEecCCCcHHHHH-HHHHHHHHHcCCCEEEEecCHHH
Q 005155 16 DGS--IAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYL 55 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva-~Lpa~l~AL~G~~VhVvT~NdyL 55 (711)
.|. +.-=.+|.|||..+ ++.-.+..-.|..|..++..+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 455 34446999999654 33333322458778777765543
No 209
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.53 E-value=38 Score=35.06 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~el 102 (711)
.+|.|||..+-..+ +.+.+..+..+... ++.-.-.++.
T Consensus 53 ppGtGKT~la~ala--~~~~~~~~~~i~~~----------------------------------------~l~~~~~g~~ 90 (322)
T 1xwi_A 53 PPGTGKSYLAKAVA--TEANNSTFFSISSS----------------------------------------DLVSKWLGES 90 (322)
T ss_dssp SSSSCHHHHHHHHH--HHTTSCEEEEEECC----------------------------------------SSCCSSCCSC
T ss_pred CCCccHHHHHHHHH--HHcCCCcEEEEEhH----------------------------------------HHHhhhhhHH
Q ss_pred hhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 103 gfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...+..-....... ...+++|||+|++
T Consensus 91 -----~~~~~~lf~~a~~~---~~~vl~iDEid~l 117 (322)
T 1xwi_A 91 -----EKLVKNLFQLAREN---KPSIIFIDEIDSL 117 (322)
T ss_dssp -----HHHHHHHHHHHHHT---SSEEEEEETTTGG
T ss_pred -----HHHHHHHHHHHHhc---CCcEEEeecHHHh
No 210
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=34.77 E-value=63 Score=33.48 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.0
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+.-++||||+|.+
T Consensus 138 ~~~llvlDe~~~l 150 (412)
T 1w5s_A 138 HYLLVILDEFQSM 150 (412)
T ss_dssp CEEEEEEESTHHH
T ss_pred CeEEEEEeCHHHH
Confidence 4568999999997
No 211
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.63 E-value=47 Score=33.77 Aligned_cols=13 Identities=46% Similarity=0.928 Sum_probs=11.3
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.+
T Consensus 133 ~~~vliiDE~~~l 145 (353)
T 1sxj_D 133 PYKIIILDEADSM 145 (353)
T ss_dssp SCEEEEETTGGGS
T ss_pred CceEEEEECCCcc
Confidence 5679999999987
No 212
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=34.53 E-value=29 Score=36.42 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHH------cCCCEEEEecCH
Q 005155 16 DGSIAE--MKTGEGKTLVSTLAAYLNAL------TGEGVHVVTVND 53 (711)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~Lpa~l~AL------~G~~VhVvT~Nd 53 (711)
.|.+.+ -..|.|||..+.-.++..++ .|.+|..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455444 46899999766555542234 366777776654
No 213
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=34.40 E-value=38 Score=29.13 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|+...+|.++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG 88 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGG 88 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCc
Confidence 567899999999999999999999999966677663
No 214
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=34.22 E-value=57 Score=27.77 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|++ ..+|.++
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG 92 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGG 92 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCC
Confidence 57899999999999999999999999996 5567664
No 215
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=34.08 E-value=56 Score=33.34 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..++....+.++.|++++..-|.+-++. +...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGK----LKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHH----HHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHH----HHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 334444555778899999998766654444 455699999999999988887654 358999985
No 216
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=34.02 E-value=1.5e+02 Score=25.46 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=37.1
Q ss_pred cCCcEEEEecc------hhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 352 LGRPVLVGSTS------VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 352 ~grPVLV~t~S------i~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
+..||.||+.+ .-.|...-+.|.+.|++....|-. ...+...++....|...
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~-~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNIL-ENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG-GCHHHHHHHHHHHTCSS
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECC-CCHHHHHHHHHHHCCCC
Confidence 34589999984 888999999999999999988864 22222334555556543
No 217
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.52 E-value=54 Score=34.11 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=13.2
Q ss_pred eEEecCCCcHHHHHHHHH
Q 005155 19 IAEMKTGEGKTLVSTLAA 36 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa 36 (711)
+..=.+|.|||.++-..+
T Consensus 55 ll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 556679999998765444
No 218
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=32.84 E-value=30 Score=36.71 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH------cCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL------TGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL------~G~~VhVvT~N 52 (711)
|+-.|=|+|||.+++-.|+..|. .|++|.+|=-.
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D 152 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 44568899999876666655553 68999988764
No 219
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=32.74 E-value=80 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=27.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCe
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPH 380 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~ 380 (711)
.+.+||+|.|.+-..|...+..|++.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~ 68 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTH 68 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSS
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCC
Confidence 567899999999999999999999999863
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=32.70 E-value=36 Score=35.13 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=23.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCCEEEEecCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVND 53 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A-L~G~~VhVvT~Nd 53 (711)
+.-=.||.|||..+...+.... -.|..|..++.++
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 6667899999975543333223 4678888777654
No 221
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=32.48 E-value=38 Score=28.55 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=30.1
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
.+.+||+|.|.+-..|...+..|++.|+...+|.+
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecc
Confidence 46789999999999999999999999995556655
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=32.33 E-value=36 Score=31.86 Aligned_cols=34 Identities=24% Similarity=0.067 Sum_probs=20.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+..=.+|.|||..+-..+....-.|..|..++..
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 5566799999976543332222346667666654
No 223
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=32.24 E-value=36 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=30.1
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
.+.+||+|.|.+-..|...+..|++.|+...+|.+
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCC
Confidence 46789999999999999999999999996556655
No 224
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=32.21 E-value=1.3e+02 Score=30.80 Aligned_cols=104 Identities=8% Similarity=0.048 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 005155 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (711)
Q Consensus 301 e~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~g 377 (711)
.+++|.+.||.+-+ ..+.......+..|.|+......+.+ +.+..+.+.|.+||+ ++.|.++++.+.+.-++.|
T Consensus 61 ~a~~~a~~~g~~~~-y~d~~ell~~~~iDaV~I~tP~~~H~--~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 137 (350)
T 4had_A 61 RAREMADRFSVPHA-FGSYEEMLASDVIDAVYIPLPTSQHI--EWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137 (350)
T ss_dssp HHHHHHHHHTCSEE-ESSHHHHHHCSSCSEEEECSCGGGHH--HHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCee-eCCHHHHhcCCCCCEEEEeCCCchhH--HHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence 35677777776421 22333333334567776544433332 233344468999998 6889999999999999999
Q ss_pred CCeEEEeCCCcchH--hH-HHHHHhcCCCccEEEE
Q 005155 378 IPHNVLNARPKYAA--RE-AETVAQAGRKYAITIS 409 (711)
Q Consensus 378 i~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIA 409 (711)
+...+-.-. .++. +. .++| +.|.-|.|.-.
T Consensus 138 ~~l~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~i 170 (350)
T 4had_A 138 VVVTEAYMI-TYSPVWQKVRSLI-DEGAIGSLRHV 170 (350)
T ss_dssp CCEEECCGG-GGSHHHHHHHHHH-HTTTTSSEEEE
T ss_pred CceeEeeee-ecCHHHHHhhHhh-hcCCCCcceee
Confidence 887663321 1111 12 2333 57888887544
No 225
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=32.13 E-value=53 Score=35.67 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=19.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+.-=.+|.|||+.+-..+ +.+.+..+..+..+
T Consensus 171 LL~GppGtGKT~lA~aia--~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 171 LLFGPPGTGKSYLAKAVA--TEANNSTFFSISSS 202 (444)
T ss_dssp EEECSTTSSHHHHHHHHH--HHCCSSEEEEECCC
T ss_pred EEECCCCCCHHHHHHHHH--HHcCCCCEEEEeHH
Confidence 666779999997664333 23435544444443
No 226
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=31.72 E-value=1.1e+02 Score=32.26 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
++++.+.||.++ ..+..........|.|+........ .+.+..+.+.|.+||+ ++.|.++++.|.+..++.|+
T Consensus 41 ~~~~a~~~g~~~--~~~~~ell~~~~vD~V~i~tp~~~H--~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~ 116 (387)
T 3moi_A 41 RERFGKEYGIPV--FATLAEMMQHVQMDAVYIASPHQFH--CEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGV 116 (387)
T ss_dssp HHHHHHHHTCCE--ESSHHHHHHHSCCSEEEECSCGGGH--HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCe--ECCHHHHHcCCCCCEEEEcCCcHHH--HHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCC
Confidence 345555665542 2222222222234555543322222 1333445568999999 68899999999999999998
Q ss_pred CeEEEeCCCcch--HhH-HHHHHhcCCCccEEEEc
Q 005155 379 PHNVLNARPKYA--ARE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~~vLnA~~~~~--~~E-a~Iia~AG~~G~VTIAT 410 (711)
...+-.-. .++ -+. .+++ +.|.-|.|...+
T Consensus 117 ~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~~~ 149 (387)
T 3moi_A 117 HLVVGTSR-SHDPVVRTLRAIV-QEGSVGRVSMLN 149 (387)
T ss_dssp CEEECCCG-GGSHHHHHHHHHH-HHCTTCCEEEEE
T ss_pred eEEEEecc-ccCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 87653221 111 122 2333 568888876554
No 227
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=31.49 E-value=60 Score=29.42 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=29.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|++ ..+|.++
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG 114 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDG 114 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCC
Confidence 56789999999999999999999999995 6677775
No 228
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=31.36 E-value=93 Score=31.25 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..+.|++++..-|.. +...+...|+.+..+.++++..+|.... ..+|+++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~----l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKE----LASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHH----HHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHH----HHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 56689999999766554 4445555699999999999988887554 458999995
No 229
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.06 E-value=1.6e+02 Score=24.72 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=37.5
Q ss_pred HHHHhhhcCCcEEEEec------chhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 345 EVESMFRLGRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 345 ei~~~~~~grPVLV~t~------Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
.+.+..+. -||+||+. ..-.|..+...|.+.|++...+|-.. +.+-..++....|..+
T Consensus 9 ~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~ 72 (105)
T 2yan_A 9 RLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKAYSNWPT 72 (105)
T ss_dssp HHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG-CHHHHHHHHHHHTCCS
T ss_pred HHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC-CHHHHHHHHHHHCCCC
Confidence 33333333 37888884 56789999999999999999988742 2221223444556544
No 230
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=30.93 E-value=39 Score=35.73 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 16 DGSIAE--MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
.|.+.+ =..|.|||..+.-.+...+..|..|..++...-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 466444 468999997665555544567888888887543
No 231
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=30.50 E-value=2.1e+02 Score=32.76 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=42.5
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.|..|.|.|.+..-|++-++ ++.-.|+++..+.++++..+|.... ..+|++||+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~----~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~ 497 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTS----FLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 497 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHH----HHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred cCCEEEEEECCHHHHHHHHH----HHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC
Confidence 68899999998877765554 4455699999999999988887652 468999985
No 232
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=30.44 E-value=2e+02 Score=30.93 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=61.1
Q ss_pred HHHHHHHcCCCe---EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHH
Q 005155 302 EKEFLKMFQMPV---IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQ 375 (711)
Q Consensus 302 ~~Ef~~iY~l~v---v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~ 375 (711)
.+++.+.|+.+. ....+..........|.|+......+. .+.+..+.+.|.+||+ .+.|.++++.|.+..++
T Consensus 122 ~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h--~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 199 (433)
T 1h6d_A 122 AKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH--AEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKA 199 (433)
T ss_dssp HHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH--HHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH--HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 456777888652 223333333333356777655433332 2333344568899998 46788999999999999
Q ss_pred CCCCeEEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 376 QGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 376 ~gi~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
.|+...+-.-. .++. +. .+++ +.|.-|.|.-..
T Consensus 200 ~g~~~~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~v~ 235 (433)
T 1h6d_A 200 ANKKLMIGYRC-HYDPMNRAAVKLI-RENQLGKLGMVT 235 (433)
T ss_dssp HTCCEEECCGG-GGCHHHHHHHHHH-HTTSSCSEEEEE
T ss_pred hCCeEEEEech-hcCHHHHHHHHHH-HcCCCCCcEEEE
Confidence 99887653211 1111 12 2233 568888876543
No 233
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=30.42 E-value=44 Score=34.93 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.3
Q ss_pred CccEEEeechhhhhhh
Q 005155 125 PFHFAIVDEVDSVLID 140 (711)
Q Consensus 125 ~~~~aIVDEvDs~LiD 140 (711)
+..++++||+|.+.-+
T Consensus 137 ~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 137 QKGIVFIDEIDKISRL 152 (376)
T ss_dssp TTSEEEEETGGGC---
T ss_pred CCeEEEEcCHHHHhhh
Confidence 4579999999998533
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=30.41 E-value=26 Score=35.08 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=11.4
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.+
T Consensus 110 ~~~vliiDe~~~l 122 (327)
T 1iqp_A 110 SFKIIFLDEADAL 122 (327)
T ss_dssp SCEEEEEETGGGS
T ss_pred CCeEEEEeCCCcC
Confidence 5679999999987
No 235
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=30.40 E-value=98 Score=32.04 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 34 Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+.-++....+.++.|.+++..-+.. +...+...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~----l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDW----LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHH----HHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHH----HHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 3344566777899999999866654 4444455699999999999988887654 357888885
No 236
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=29.97 E-value=1.3e+02 Score=30.83 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=55.7
Q ss_pred HHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCC
Q 005155 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 303 ~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
+++.+.|+.. ..+..........|.|+......+. .+.+..+.+.|.+||+ .+.|.++++.+.+..++.|+.
T Consensus 42 ~~~~~~~~~~---~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (331)
T 4hkt_A 42 EAIAGAYGCE---VRTIDAIEAAADIDAVVICTPTDTH--ADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK 116 (331)
T ss_dssp HHHHHHTTCE---ECCHHHHHHCTTCCEEEECSCGGGH--HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC---cCCHHHHhcCCCCCEEEEeCCchhH--HHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence 4555556543 2222222222234555543322222 1233344567999998 678999999999999999988
Q ss_pred eEEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 380 HNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 380 ~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
..+-.-. .++. +. .+++ +.|.-|.|....
T Consensus 117 ~~v~~~~-r~~p~~~~~~~~i-~~g~iG~i~~~~ 148 (331)
T 4hkt_A 117 LMVGFNR-RFDPHFMAVRKAI-DDGRIGEVEMVT 148 (331)
T ss_dssp EEECCGG-GGCHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred EEEcccc-cCCHHHHHHHHHH-HcCCCCceEEEE
Confidence 7653221 1111 11 2333 568888776543
No 237
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.77 E-value=1.1e+02 Score=31.54 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEEeCCCcchH--hH-HHHHHhcCCCccEEEE
Q 005155 346 VESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIS 409 (711)
Q Consensus 346 i~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIA 409 (711)
+..+.+.|.+||+ ++.|.++++.+.+..++.|+...+-.-. .++. +. .+++ +.|.-|.|.-.
T Consensus 83 ~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~v 150 (354)
T 3db2_A 83 IEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSS-RRLGALRKMKEMI-DTKEIGEVSSI 150 (354)
T ss_dssp HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGG-GGSHHHHHHHHHH-HTTTTCCEEEE
T ss_pred HHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeech-hcCHHHHHHHHHH-hcCCCCCeEEE
Confidence 3344568999999 6788999999999999999887663321 1111 12 2233 56888887644
No 238
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=29.28 E-value=52 Score=33.06 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVv 49 (711)
|+=..||.|||.+++..+...+-.|..|..+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 6667899999987555443334466666654
No 239
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=29.18 E-value=61 Score=27.84 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=32.5
Q ss_pred hhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
..+.+||+|.|.+-..|...+..|++.|+...+|.++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG 89 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGN 89 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCC
Confidence 3578999999999999999999999999976777775
No 240
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=28.47 E-value=1.6e+02 Score=30.21 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 005155 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (711)
Q Consensus 301 e~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~g 377 (711)
-++++.+.|+.+-+ .............|.|+......+.+ +.+..+.+.|.+||+ ++.|.++++.+.+.-++.|
T Consensus 69 ~a~~~a~~~g~~~~-y~d~~ell~~~~iDaV~IatP~~~H~--~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 145 (393)
T 4fb5_A 69 LAEARAGEFGFEKA-TADWRALIADPEVDVVSVTTPNQFHA--EMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSG 145 (393)
T ss_dssp THHHHHHHHTCSEE-ESCHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCee-cCCHHHHhcCCCCcEEEECCChHHHH--HHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcC
Confidence 35667777776421 12222223333456666544444432 233344468999998 5889999999999999999
Q ss_pred CCeEEEeCCCcchH--hHH-HHHHhcCCCccEEEEc
Q 005155 378 IPHNVLNARPKYAA--REA-ETVAQAGRKYAITIST 410 (711)
Q Consensus 378 i~~~vLnA~~~~~~--~Ea-~Iia~AG~~G~VTIAT 410 (711)
+...+-.-. .++. +.+ +++ +.|.-|.|.-..
T Consensus 146 ~~l~vg~~~-R~~p~~~~~k~~i-~~G~iG~i~~v~ 179 (393)
T 4fb5_A 146 KVAALGYNY-IQNPVMRHIRKLV-GDGVIGRVNHVR 179 (393)
T ss_dssp SCEEECCGG-GGCHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred Ccccccccc-ccChHHHHHHHHH-HcCCCcccccee
Confidence 887763321 1111 222 333 568888886543
No 241
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=28.15 E-value=42 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|++ ..+|.++
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG 116 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCc
Confidence 56789999999999999999999999996 5667775
No 242
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=28.12 E-value=1.7e+02 Score=29.91 Aligned_cols=104 Identities=10% Similarity=0.085 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
+++|.+.|+.+.+ ..+..........|.|+......+. .+.+..+.+.|.+||+ ++.|.++++.+.+..++.|+
T Consensus 42 a~~~a~~~~~~~~-~~~~~~ll~~~~vD~V~i~tp~~~H--~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~ 118 (334)
T 3ohs_X 42 AKEFAQKHDIPKA-YGSYEELAKDPNVEVAYVGTQHPQH--KAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118 (334)
T ss_dssp HHHHHHHHTCSCE-ESSHHHHHHCTTCCEEEECCCGGGH--HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcc-cCCHHHHhcCCCCCEEEECCCcHHH--HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4556666665311 1222222222345666554333322 1333444568999998 67899999999999999998
Q ss_pred CeEEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 379 PHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
...+-.-. .++. +. .+++ +.|.-|.|.-.+
T Consensus 119 ~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 151 (334)
T 3ohs_X 119 FLMEAIWT-RFFPASEALRSVL-AQGTLGDLRVAR 151 (334)
T ss_dssp CEEEECGG-GGSHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred EEEEEEhH-hcCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 77653221 1111 12 2333 468888876554
No 243
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=27.94 E-value=25 Score=35.06 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=11.4
Q ss_pred CccEEEeechhhh
Q 005155 125 PFHFAIVDEVDSV 137 (711)
Q Consensus 125 ~~~~aIVDEvDs~ 137 (711)
+..++||||+|.+
T Consensus 102 ~~~vliiDe~~~l 114 (319)
T 2chq_A 102 PFKIIFLDEADAL 114 (319)
T ss_dssp CCEEEEEETGGGS
T ss_pred CceEEEEeCCCcC
Confidence 5689999999987
No 244
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=27.70 E-value=48 Score=28.64 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=29.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
.+.+||+|.|.+-..|...+..|++.|++...|.+
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~G 88 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETT
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecC
Confidence 46789999999999999999999999997554544
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.40 E-value=80 Score=30.07 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=26.8
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
..|. +.--.+|.|||..+.-.+...+-.|.+|..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3565 45568999999765544443455788898888754
No 246
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.35 E-value=59 Score=36.46 Aligned_cols=34 Identities=32% Similarity=0.261 Sum_probs=27.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
+.--++|.|||.+++-.|...|-.|+.|.++...
T Consensus 331 ~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 5566899999987666666567889999999776
No 247
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=27.02 E-value=56 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.1
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+ +||+|.|.+-..|...+..|++.|++..+|.++
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG 86 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGG 86 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEccc
Confidence 35 899999999999999999999999986667664
No 248
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=26.99 E-value=1.8e+02 Score=31.06 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC----CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEc
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~----gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
+.++||.+++.+-++...+.+++. |+++..++++.....+...+.. ...|.|+|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T 109 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILT 109 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEEC
Confidence 778999999999888877766664 8999999986433333223322 35788888
No 249
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=32.45 E-value=14 Score=34.32 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 005155 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (711)
Q Consensus 38 l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~------~DI~YgT~ 99 (711)
+....+.++.|.+++..-+..-++ .+...|+.+..+.++|++.+|..... ++|+++|.
T Consensus 25 l~~~~~~~~iVF~~~~~~~~~l~~----~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 25 LKQPEATRSIVFVRKRERVHELAN----WLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 344456788899988766654444 44456899999999999888776542 46777773
No 250
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.18 E-value=25 Score=38.70 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=58.6
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEe
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (711)
.|..+|+| ||....+. +|-+. -.+.+..+|+.+. -|+|=.||.+|- ++-+..-.+.+++.|
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~--------~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIV--------LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTH--------HHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 47789999 88876554 33332 1234556666553 589999999985 566777788887766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
-...-. .-|..+.++ .+..+....+...|++||...+.
T Consensus 247 ~~s~l~-------~~~vGese~---~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 247 AAPQLV-------QMYIGEGAK---LVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp EGGGGC-------SSCSSHHHH---HHHHHHHHHHHHCSEEEEEECTH
T ss_pred ehhhhh-------hcccchHHH---HHHHHHHHHHhcCCeEEeecchh
Confidence 431100 012333332 33444444445679999977554
No 251
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=26.17 E-value=1.8e+02 Score=35.65 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=43.9
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHH---CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~---~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn 411 (711)
..|..+||.+++.+-+..+.+.|++ .|+++..++++....+++..+-. ..| .-.|.|+|.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEECH
Confidence 5778899999999999999999998 67888999987443333333322 233 357889983
No 252
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.14 E-value=59 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=12.7
Q ss_pred eEEecCCCcHHHHHHHH
Q 005155 19 IAEMKTGEGKTLVSTLA 35 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lp 35 (711)
+..=.+|.|||.++-..
T Consensus 59 ll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANII 75 (338)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 66678999999765443
No 253
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=25.99 E-value=1.2e+02 Score=31.21 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=43.3
Q ss_pred HHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 38 LNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 38 l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+... .+..+.|.+++..-|..-++ .+...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 270 l~~~~~~~~~lVf~~~~~~~~~l~~----~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 270 LNATGKDSLTLVFVETKKGADSLED----FLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp HHTCCTTCEEEEECSSHHHHHHHHH----HHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred HHhcCCCCeEEEEECCHHHHHHHHH----HHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 3444 46779999999876665444 4445699999999999988887654 358999985
No 254
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=25.99 E-value=62 Score=31.48 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~N 52 (711)
++-=+.|.|||-. ..|..+ .+ .|+.|.||...
T Consensus 18 ~~~GkgGvGKTTl~~~La~~-l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRY-LE-DNYKVAYVNLD 50 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHH-HT-TTSCEEEEECC
T ss_pred EEeCCCCCCHHHHHHHHHHH-HH-CCCeEEEEeCC
Confidence 4455789999854 444444 45 88888888643
No 255
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=25.97 E-value=28 Score=37.06 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=16.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHH------HcCCCEEEEecC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA------LTGEGVHVVTVN 52 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A------L~G~~VhVvT~N 52 (711)
|+--|=|+|||.+++-.|+..| ..|++|.+|=-.
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D 155 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEES
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 4445889999986666665555 468899888654
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=25.95 E-value=53 Score=33.87 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.9
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
..|. +.--.+|.|||..+.-.++-.|..|.+|.+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4566 666789999997555555434556767777763
No 257
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=25.85 E-value=68 Score=35.58 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.7
Q ss_pred CccEEEeechhhhh
Q 005155 125 PFHFAIVDEVDSVL 138 (711)
Q Consensus 125 ~~~~aIVDEvDs~L 138 (711)
...+++|||+|++.
T Consensus 108 ~p~ILfIDEid~l~ 121 (476)
T 2ce7_A 108 APCIVFIDEIDAVG 121 (476)
T ss_dssp CSEEEEEETGGGTC
T ss_pred CCCEEEEechhhhh
Confidence 45799999999984
No 258
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=25.65 E-value=2.5e+02 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=28.9
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCC----CCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQG----IPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~g----i~~~vLnA~ 386 (711)
..+..+||.+++.+-++.+.+.+++.+ +.+..+.++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 134 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 134 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECC
Confidence 356789999999999999888887743 677777775
No 259
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=25.63 E-value=1.4e+02 Score=31.70 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 43 GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 43 G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
+.++.|.+.+..-|. ++...+...|+.+..+.++++..+|..+. .++|+++|.
T Consensus 300 ~~~~lVF~~t~~~a~----~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGAD----FLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHH----HHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CCCEEEEEeCcHHHH----HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 445999999876555 45555556799999999999988887654 368999995
No 260
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.44 E-value=29 Score=38.30 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=59.5
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEe
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (711)
.|+.+|+| ||..+.+. +|-+.. .+.+..+|+.|. -|+|--||.+|- ++-+..-.+.+++.|
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~--------Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVEL--------PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHH--------HHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHH--------HHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 47789998 88876553 333321 244566777663 589999999985 566777788887765
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
-... .- . -|..+.++ .+..+....+...|++||...+.
T Consensus 248 ~~s~--l~----s-k~vGesek---~ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 248 VGSE--LI----Q-KYLGDGPR---LCRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp ESGG--GC----C-SSSSHHHH---HHHHHHHHHHHTCSEEEEEEEES
T ss_pred EHHH--hh----h-ccCchHHH---HHHHHHHHHHhcCCcEEEEehhh
Confidence 3211 00 0 02233332 34444444456789999976554
No 261
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=25.39 E-value=2.8e+02 Score=29.88 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=61.7
Q ss_pred HHHHHcCCCe-EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecc-----hhhHHHHHHHHHHCC
Q 005155 304 EFLKMFQMPV-IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS-----VENSEYLSDLLKQQG 377 (711)
Q Consensus 304 Ef~~iY~l~v-v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~S-----i~~SE~Ls~~L~~~g 377 (711)
-+.++-++++ ...|.|-|..|.+.. .+ .....+|.. .......|+|+--| ...++.+++-|.+.|
T Consensus 224 ~L~kl~~Ldi~~I~P~HGpi~r~~~~-~i-i~~Y~~w~~-------~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G 294 (410)
T 4dik_A 224 GAEKLSSLKIKALLPGHGLIWKKDPQ-RL-LNHYVSVAK-------GDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKG 294 (410)
T ss_dssp HHHHHHTSCCSEEEESSSCBBSSCHH-HH-HHHHHHHHH-------TCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCEEecCCcchhhcCHH-HH-HHHHHHhhc-------ccccccceeeEEecccChHHHHHHHHHHHHHhcC
Confidence 3556667776 567999999885421 11 111222221 10112247776555 456889999999999
Q ss_pred CCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCc
Q 005155 378 IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414 (711)
Q Consensus 378 i~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAG 414 (711)
++..+.+-..-....-.+|++.+.+...|.|+|..-+
T Consensus 295 v~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~ 331 (410)
T 4dik_A 295 FTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE 331 (410)
T ss_dssp CEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT
T ss_pred CceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC
Confidence 9876543210011234578888988999999887644
No 262
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=25.37 E-value=1.1e+02 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=42.8
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.|..+.|.+.+..-+++-++.+ ...|+.+..+.++|++++|.... ..+|+++|+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L----~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSL----QNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHH----HHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 5778999999987776655554 44699999999999998887654 358999996
No 263
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=25.17 E-value=49 Score=29.14 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=30.5
Q ss_pred hcCCcEEEEecchhh--HHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSVEN--SEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~--SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+.+||+|.|.+-.. |...+..|++.|++..+|.++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG 106 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGA 106 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCc
Confidence 457899999999887 899999999999986666663
No 264
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=25.16 E-value=50 Score=37.31 Aligned_cols=30 Identities=33% Similarity=0.197 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEecCHH
Q 005155 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (711)
Q Consensus 25 GEGKTLva~Lpa~l~AL~G~~VhVvT~Ndy 54 (711)
|||||.+++=.+...|..|++|.++--++.
T Consensus 71 GEGKSTtsinLA~alA~~GkkVLLiLR~Ps 100 (557)
T 3pzx_A 71 GEGKTTTSVGLTDALARLGKRVMVCLREPS 100 (557)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999998766555556789999999844433
No 265
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=24.55 E-value=46 Score=40.93 Aligned_cols=76 Identities=16% Similarity=0.048 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
|-..|-...+.-+......|..|||.+++..-++...+.+++ .++...++++.....++...+.. ..| ...|.|
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g-~~dIvV 711 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG-KIDILI 711 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC-CCCEEE
Confidence 344454433223333346788999999999999888877765 35777888774322222222222 334 457889
Q ss_pred Ec
Q 005155 409 ST 410 (711)
Q Consensus 409 AT 410 (711)
+|
T Consensus 712 ~T 713 (1151)
T 2eyq_A 712 GT 713 (1151)
T ss_dssp EC
T ss_pred EC
Confidence 99
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=24.52 E-value=71 Score=30.46 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecC
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN 52 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~N 52 (711)
.|. +..-.+|.|||..+.=-++-.+. .|+.|.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 455 56668999999755433332234 46788887753
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.33 E-value=34 Score=37.49 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEe
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (711)
.|+-+|+| ||....+. +|-+. ..+.+..+|+.+. -|+|=.||.+|. ++-+..-.|.+++.|
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~--------~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVE--------LPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHH--------HHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 46789998 88765542 23222 2245666776663 689999999985 556667778888766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
....-. . -|..+.+ ..+.++....+...|++||...+.
T Consensus 238 ~~~~l~------~-~~~Ge~e---~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 238 NGSEFV------H-KYLGEGP---RMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp EGGGTC------C-SSCSHHH---HHHHHHHHHHHHTCSEEEEEECTH
T ss_pred ecchhh------c-cccchhH---HHHHHHHHHHHHcCCCeeechhhh
Confidence 431100 0 0222222 223444444456679999976543
No 268
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=24.31 E-value=1.9e+02 Score=29.86 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=41.1
Q ss_pred HHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 347 ESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 347 ~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
..+.+.|.+||+ .+.|.++++.+.+..++.|....+-.-. .++. +. .+++ ++|.-|.|.-.+
T Consensus 93 ~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 160 (354)
T 3q2i_A 93 IECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQN-RRNATLQLLKRAM-QEKRFGRIYMVN 160 (354)
T ss_dssp HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGG-GGSHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred HHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcc-cCCHHHHHHHHHH-hcCCCCceEEEE
Confidence 344568999998 6779999999999999999887553211 1111 12 2233 578888886543
No 269
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=24.19 E-value=2.5e+02 Score=26.30 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=36.7
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC-----CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEc
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQ-----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~-----gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
+.++||.+++.+-++.+.+.+++. ++.+.+++++.....+. ..+.+ + ...|+|+|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~-~-~~~i~v~T 141 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKK-N-CPHIVVGT 141 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH-HHHHH-S-CCSEEEEC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH-HHHhc-C-CCCEEEeC
Confidence 457999999999999988887764 78888888763322222 22222 2 23677776
No 270
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.10 E-value=1.7e+02 Score=34.44 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
|-..|-.+..--+......|..+||.+++..-++...+.+++ .|+++.+++++.+..++...+-. ..| ...|.|
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvV 476 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVI 476 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEE
Confidence 344455443333444445788999999999988887776655 37999999987544333332222 334 457889
Q ss_pred EcC
Q 005155 409 STN 411 (711)
Q Consensus 409 ATn 411 (711)
+|.
T Consensus 477 gT~ 479 (780)
T 1gm5_A 477 GTH 479 (780)
T ss_dssp ECT
T ss_pred ECH
Confidence 885
No 271
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=24.03 E-value=77 Score=28.22 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=29.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+=..|...+..|++.|+. ...|.++
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG 108 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDG 108 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCC
Confidence 56799999999999999999999999986 3334443
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=23.92 E-value=1e+02 Score=32.28 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=31.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.+|.|||-+....+.+..-.|..|.++...-+-+. ..+++....+.+|+.+.
T Consensus 137 ~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~-a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG-AIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT-HHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc-hHHHHHHHHHHcCceEE
Confidence 48999986555555445667888988876543211 22344444556676554
No 273
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=23.84 E-value=26 Score=34.64 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=39.2
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhcc--cccCCCCCcceEEEecchhhhhhcc
Q 005155 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (711)
Q Consensus 551 ~~~V~~~GGL~VIgTerheSrRiD~QLrGR--aGRQGDpGss~f~lSleD~l~~~f~ 605 (711)
..+|.+-|=.||.|+ |||| ||-.||.....|-.+|+=+++++-|
T Consensus 129 GAeViA~GnI~V~G~-----------LrG~a~AGa~Gn~~A~I~a~~l~pe~l~Iag 174 (210)
T 1hf2_A 129 GAEILAGGSVVVFGK-----------AQGNIRAGLNEGGQAVVAALDLQTSLIQIAG 174 (210)
T ss_dssp TCEEEESSCEEEEEE-----------ECSEEEECTTTCTTCEEEEEEECCSEEEETT
T ss_pred CCEEEeCCcEEEEEe-----------eceEEEeCCCCCCCcEEEeccCcceEEEECC
Confidence 468899999999998 6677 7999999999999999999999865
No 274
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=23.81 E-value=66 Score=28.51 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=31.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|+. ..+|+++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG 120 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGG 120 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCC
Confidence 57889999999999999999999999996 6677764
No 275
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=23.79 E-value=1.3e+02 Score=32.31 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 005155 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (711)
Q Consensus 633 ~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~ 677 (711)
..|...|..++..+-+..+.+++...-.+.+++-+|..|+.|+.|
T Consensus 56 ~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G 100 (359)
T 3fs3_A 56 KKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVG 100 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 557888988888888888888888888889999999999999974
No 276
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=23.67 E-value=1.8e+02 Score=31.16 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC----CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEc
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~----gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
+.++||.+++.+-++...+.+++. |+++.+++++.....+...+.. ...|.|+|
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T 112 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVT 112 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEEC
Confidence 778999999999888887777664 8999999886322222222322 24688888
No 277
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.66 E-value=38 Score=37.68 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=58.7
Q ss_pred ccccccCh--hhhHHHHh-HhCCccccCceeeeeeeehhHhhhcC-------ccccccCCcccH-HHHHHHHcCCCeEEe
Q 005155 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (711)
Q Consensus 248 ~~gr~ws~--GLHQaiEa-KEgv~I~~es~t~a~Is~q~~F~~Y~-------kl~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (711)
.|+-+|+| ||....+. +|-+.. .+.+...|+.|. -|+|-.||.+|- ++-+..-.+..++.|
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~--------pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL--------PLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH--------HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH--------HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 47789998 88875543 333321 245566777663 589999999985 455667778887765
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchh
Q 005155 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (711)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~ 364 (711)
-...= - .-|..+.+ +.+.++........|++||...+.
T Consensus 275 s~s~L------~-sk~vGese---k~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 275 IGSEL------V-QKYVGEGA---RMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp EGGGG------C-CCSSSHHH---HHHHHHHHHHHHTCSEEEEEECCT
T ss_pred EhHHh------h-cccCCHHH---HHHHHHHHHHHhcCCceEeecccc
Confidence 32110 0 01223322 233444444456679999977554
No 278
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=23.46 E-value=60 Score=29.48 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.2
Q ss_pred hhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
..+.+||+|.|.+-..|...+..|+..|+. ..+|.++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 90 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 90 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCH
Confidence 357789999999999999999999999996 5566663
No 279
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=23.28 E-value=69 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEEeCC
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~-~~vLnA~ 386 (711)
.+.+||+|.|.+-..|...+..|++.|++ ..+|.++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG 116 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGG 116 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSC
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCc
Confidence 57889999999999999999999999995 6677775
No 280
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=23.25 E-value=2.6e+02 Score=30.55 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred HHHHHHHcCCC-eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcC------CcEEE---EecchhhHHHHHH
Q 005155 302 EKEFLKMFQMP-VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLG------RPVLV---GSTSVENSEYLSD 371 (711)
Q Consensus 302 ~~Ef~~iY~l~-vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~g------rPVLV---~t~Si~~SE~Ls~ 371 (711)
++++.+.||.+ +....+..........|.|+......+. .+.+..+.+.| .+||+ .+.|.++++.|.+
T Consensus 82 a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~~H--~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~ 159 (479)
T 2nvw_A 82 SLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEH--YEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYS 159 (479)
T ss_dssp HHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHH--HHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHH
T ss_pred HHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcHHH--HHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHH
Confidence 45566677763 2222332233332345666655444443 23334445678 88998 5678999999999
Q ss_pred HHHHCC-CCeEEEeCCCcchH--hH-HHHHHhcCCCccEEEE
Q 005155 372 LLKQQG-IPHNVLNARPKYAA--RE-AETVAQAGRKYAITIS 409 (711)
Q Consensus 372 ~L~~~g-i~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIA 409 (711)
..++.| +...+-.-. .++. +. .+++ ++|.-|.|.-.
T Consensus 160 ~a~~~g~~~~~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~v 199 (479)
T 2nvw_A 160 ISQQRANLQTIICLQG-RKSPYIVRAKELI-SEGCIGDINSI 199 (479)
T ss_dssp HHHTCTTCEEEEECGG-GGCHHHHHHHHHH-HTTTTCSEEEE
T ss_pred HHHHcCCeEEEEEecc-ccCHHHHHHHHHH-HcCCCCCeEEE
Confidence 999999 876553221 1111 12 2233 56888877644
No 281
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=23.17 E-value=3.2e+02 Score=27.98 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=54.7
Q ss_pred cccccCCcccHH-HHHHHHcCCCeEEeCCCCCcc--cccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHH
Q 005155 291 LSGMTGTAKTEE-KEFLKMFQMPVIEVPTNLPNI--RVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSE 367 (711)
Q Consensus 291 l~GmTGTa~te~-~Ef~~iY~l~vv~IPt~~p~~--R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE 367 (711)
+.|.||..|..- +.+.+ |+.+ .+.|-| |.. ..-....+|.+-. ++.+.+ .-=+.|.|...+.+.
T Consensus 18 V~Gasg~~G~~~~~~l~~-~g~~-~V~~Vn-P~~~g~~i~G~~vy~sl~--------el~~~~--~~Dv~ii~vp~~~~~ 84 (294)
T 2yv1_A 18 VQGITGRQGSFHTKKMLE-CGTK-IVGGVT-PGKGGQNVHGVPVFDTVK--------EAVKET--DANASVIFVPAPFAK 84 (294)
T ss_dssp EETTTSHHHHHHHHHHHH-TTCC-EEEEEC-TTCTTCEETTEEEESSHH--------HHHHHH--CCCEEEECCCHHHHH
T ss_pred EECCCCCHHHHHHHHHHh-CCCe-EEEEeC-CCCCCceECCEeeeCCHH--------HHhhcC--CCCEEEEccCHHHHH
Confidence 348888776643 33444 6777 333444 221 1223455666532 222211 223555555556666
Q ss_pred HHHHHHHHCCCCeEE-EeCCCcchHhHHHHHHhcCCCccEEEEcCCCc
Q 005155 368 YLSDLLKQQGIPHNV-LNARPKYAAREAETVAQAGRKYAITISTNMAG 414 (711)
Q Consensus 368 ~Ls~~L~~~gi~~~v-LnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAG 414 (711)
.+...+.+.|++.-+ +...-. .+.+.++.+.|-+.|-..|.-|+.|
T Consensus 85 ~~v~ea~~~Gi~~vVi~t~G~~-~~~~~~l~~~A~~~gi~viGPNc~G 131 (294)
T 2yv1_A 85 DAVFEAIDAGIELIVVITEHIP-VHDTMEFVNYAEDVGVKIIGPNTPG 131 (294)
T ss_dssp HHHHHHHHTTCSEEEECCSCCC-HHHHHHHHHHHHHHTCEEECSSCCE
T ss_pred HHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEEcCCCce
Confidence 666667778888444 444321 2334455554443444455555543
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=23.13 E-value=73 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=26.6
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
+..|. |.--.+|.|||..+.-.+.-.|..|..|.+++-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34566 677889999997665555545567777777764
No 283
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=22.98 E-value=2.6e+02 Score=28.76 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEEeCCCcchH--hH-HHHHHhc
Q 005155 327 LPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQA 400 (711)
Q Consensus 327 ~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~--~E-a~Iia~A 400 (711)
..|.|+......+. .+.+..+.+.|.+||+ ++.|.++++.+.+.-++.|....+-.-. .+.. +. .+++ +.
T Consensus 82 ~vD~V~i~tp~~~H--~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~-R~~p~~~~~k~~i-~~ 157 (340)
T 1zh8_A 82 LVDAVDLTLPVELN--LPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENF-RHVPAFWKAKELV-ES 157 (340)
T ss_dssp CCSEEEECCCGGGH--HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGG-GGCHHHHHHHHHH-HT
T ss_pred CCCEEEEeCCchHH--HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecc-cCCHHHHHHHHHH-hc
Confidence 35666554333322 1333344568999999 5679999999999999999887653221 1111 11 2333 56
Q ss_pred CCCccEEE
Q 005155 401 GRKYAITI 408 (711)
Q Consensus 401 G~~G~VTI 408 (711)
|.-|.|.-
T Consensus 158 g~iG~i~~ 165 (340)
T 1zh8_A 158 GAIGDPVF 165 (340)
T ss_dssp TTTSSEEE
T ss_pred CCCCCcEE
Confidence 77887764
No 284
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=22.91 E-value=1.4e+02 Score=28.54 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.8
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHC-----CCCeEEEeCC
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQ-----GIPHNVLNAR 386 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~-----gi~~~vLnA~ 386 (711)
.+..+||.+++.+-++.+.+.+++. ++++.+++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~ 130 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGG 130 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 4568999999999999988888764 6777888875
No 285
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=22.89 E-value=91 Score=31.54 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEE
Q 005155 347 ESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNV 382 (711)
Q Consensus 347 ~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~v 382 (711)
..+.+.|.+||+ .+.|.++++.+.+..++.|+...+
T Consensus 84 ~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v 122 (308)
T 3uuw_A 84 KILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMV 122 (308)
T ss_dssp HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344568999998 678999999999999999988765
No 286
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=22.71 E-value=1.9e+02 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=44.3
Q ss_pred eChhHHHHHHHHHHHHhhh-cCCc---EEEEecchh-hHHHHHHHHHHCCCCeEEEeCC
Q 005155 333 ATARGKWEYARQEVESMFR-LGRP---VLVGSTSVE-NSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~-~grP---VLV~t~Si~-~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+..+....|+++|.+.+. .|.+ |.|.|++.. .+..+...|.+.|||+.+..+.
T Consensus 318 ~~~~~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~~ 376 (1166)
T 3u4q_B 318 ANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKA 376 (1166)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSCC
T ss_pred CChHHHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCCc
Confidence 4556667789999988876 6655 999999984 8999999999999999986654
No 287
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=22.69 E-value=1.2e+02 Score=36.95 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=52.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDIT 95 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~ 95 (711)
++...-|+|||-+.+--+.-..- .+..+.+++||..=-. --..+...+|... ...|.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt----~~~rl~~~l~~~~----------------~~~~~ 64 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL----MEYELAKTPDMGG----------------MIRAQ 64 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH----HHHHHTCCSSCSE----------------ESSEE
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH----HHHHHHHhhhhcc----------------eeeeE
Confidence 56677899999877655432222 3578999966654111 0123334444211 12588
Q ss_pred EECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++|...|++.+|+..- +..+-|+|+.|..
T Consensus 65 V~TFhsla~~il~~~g-------------~~~~~ild~~~~~ 93 (1166)
T 3u4q_B 65 VFSFSRLAWRVLQHTG-------------GMSRPFLTSTGVQ 93 (1166)
T ss_dssp EECHHHHHHHHHHHHS-------------CTTSCEECHHHHH
T ss_pred EecHHHHHHHHHHHcC-------------CCcccCcCHHHHH
Confidence 9999999998888641 2345678888754
No 288
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.67 E-value=1.9e+02 Score=29.66 Aligned_cols=103 Identities=8% Similarity=-0.057 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCC
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi 378 (711)
.+++.+.|+. ....+..........|.|+........ .+.+..+.+.|.+||+ .+.|.++++.+.+..++.|+
T Consensus 42 ~~~~a~~~g~--~~~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 117 (344)
T 3euw_A 42 AQRLAEANGA--EAVASPDEVFARDDIDGIVIGSPTSTH--VDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGAS 117 (344)
T ss_dssp HHHHHHTTTC--EEESSHHHHTTCSCCCEEEECSCGGGH--HHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHcCC--ceeCCHHHHhcCCCCCEEEEeCCchhh--HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 3556666662 223333333333345666554333222 1233344568999998 57788999999999999998
Q ss_pred CeEEEeCCCcchH--hH-HHHHHhcCCCccEEEEc
Q 005155 379 PHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 379 ~~~vLnA~~~~~~--~E-a~Iia~AG~~G~VTIAT 410 (711)
...+-.-. .++. +. .+++ +.|.-|.|.-..
T Consensus 118 ~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 150 (344)
T 3euw_A 118 KVMLGFNR-RFDPSFAAINARV-ANQEIGNLEQLV 150 (344)
T ss_dssp GEEECCGG-GGCHHHHHHHHHH-HTTTTSSEEEEE
T ss_pred eEEecchh-hcCHHHHHHHHHH-hcCCCCceEEEE
Confidence 76553221 1111 12 2333 567788775543
No 289
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=22.62 E-value=2.4e+02 Score=25.19 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=37.4
Q ss_pred CcEEEEecc------hhhHHHHHHHHHHCCC-CeEEEeCCCcchHhHHHHHHhcCCCc--cEEE
Q 005155 354 RPVLVGSTS------VENSEYLSDLLKQQGI-PHNVLNARPKYAAREAETVAQAGRKY--AITI 408 (711)
Q Consensus 354 rPVLV~t~S------i~~SE~Ls~~L~~~gi-~~~vLnA~~~~~~~Ea~Iia~AG~~G--~VTI 408 (711)
-||+||..+ .--|...-++|...|+ +....+-. ...+....+...+|.+- +|-|
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~-~~~~~r~~l~~~sg~~TvPqIFI 82 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVL-DDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETT-SCHHHHHHHHHHHTCCSSCEEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeeccc-CCHHHHHHHHHhccCCCCCeEeE
Confidence 499999765 5568888889999998 57777664 23344456777777653 3544
No 290
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=22.62 E-value=2e+02 Score=32.22 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=21.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
.+|.|||-.+.+.+.+..-.|..|.+.....
T Consensus 301 pNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 5899998765555554556788898875543
No 291
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=22.25 E-value=2.3e+02 Score=33.10 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=46.6
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhh-------cCCeEEEEcCCCCHHHHHhccC-----------CCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRF-------LGLSVGLIQRGMIPEERRSNYR-----------CDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~-------LGLtv~~i~~~~~~~~r~~aY~-----------~DI~YgT~ 99 (711)
.+..|.|.+++..-+.+-++.+...... .|+.+..+.+++++++|..++. ..|+++|+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 4778999999999888888887754332 5899999999999999886643 26899997
No 292
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=22.21 E-value=1.4e+02 Score=30.79 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=37.6
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC--------CCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR--------GMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~--------~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+.+|.|.+++..-+..-++ .+...|+.+..+.+ +++..+|.... .++|+++|.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~----~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~ 427 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVN----ELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS 427 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHH----HHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG
T ss_pred CCCeEEEEEccHHHHHHHHH----HHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC
Confidence 68899999999766665444 44445999999999 88776666443 368998884
No 293
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.20 E-value=3.1e+02 Score=24.06 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=36.3
Q ss_pred CCcEEEEecc------hhhHHHHHHHHHHCCCC---eEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 353 GRPVLVGSTS------VENSEYLSDLLKQQGIP---HNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 353 grPVLV~t~S------i~~SE~Ls~~L~~~gi~---~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
.-||.||+.+ .--|...-++|.+.|++ ....+-. ...+...++....|.+.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~-~~~~~~~~l~~~sg~~t 74 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVL-EDPELREGIKEFSEWPT 74 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECT-TCHHHHHHHHHHHTCCS
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEec-CCHHHHHHHHHHhCCCC
Confidence 4589999985 77899999999999999 6777764 22233335555666544
No 294
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=21.89 E-value=2.5e+02 Score=28.68 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEEeCCCcch--HhH-HHHHHhcCCCccEEEEc
Q 005155 346 VESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYA--ARE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 346 i~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~--~~E-a~Iia~AG~~G~VTIAT 410 (711)
+..+.+.|.+||+ .+.|.++++.+.+..++.|+...+-.-. .++ -+. .+++ +.|.-|.|.-..
T Consensus 84 ~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~i~ 152 (330)
T 3e9m_A 84 AKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKS-VFLPITQKVKATI-QEGGLGEILWVQ 152 (330)
T ss_dssp HHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSG-GGCHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhh-hhCHHHHHHHHHH-hCCCCCCeEEEE
Confidence 3344568999999 7789999999999999999876653221 111 112 2333 567778775544
No 295
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.86 E-value=1.2e+02 Score=31.02 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=39.1
Q ss_pred cEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCC
Q 005155 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (711)
Q Consensus 355 PVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnm 412 (711)
-|+|-+.+.+.+........++|++..+-+.. ....+.+-+.++.+...|.+|.||
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG--~s~~~~~~L~~aa~~~~vv~a~N~ 130 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG--FSEPQKAQLRAAGEKIALVFSANM 130 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCC--CCHHHHHHHHHHTTTSEEEECSCC
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCC--CCHHHHHHHHHHhccCCEEEECCC
Confidence 47777777887777777888888886654543 223333445556667889999999
No 296
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=21.60 E-value=72 Score=34.81 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=26.3
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
+..|. |.-..+|.|||..++-.++-.|..|.+|.+++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 44666 777889999997665555534556777777764
No 297
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=21.29 E-value=2e+02 Score=31.33 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=43.9
Q ss_pred cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+.++.|.+++..-|..-++.+...+. -|+.+..+.++|++.+|.... ..+|+++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 467899999998877766666554432 289999999999998887654 368999995
No 298
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=21.29 E-value=2.5e+02 Score=25.42 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=35.6
Q ss_pred cEEEEec------chhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 355 PVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 355 PVLV~t~------Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
+|.||+. ..-.|..+-+.|.+.|++...+|-.. +.+...++....|.+.
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~t 90 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPT 90 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCS
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCC
Confidence 7888887 56788999999999999999998742 2222334555667654
No 299
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=21.19 E-value=2.9e+02 Score=29.69 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=55.3
Q ss_pred CchhHHHHHH-HHh------CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHH---HHHHHHHHHHhhhcC
Q 005155 3 HFDVQIIGGA-VLH------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA---QRDAEWMERVHRFLG 71 (711)
Q Consensus 3 p~dvQl~g~~-~L~------~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA---~RDae~~~~~y~~LG 71 (711)
-+|+|.++=+ .+. +|. |+-+ |-||.-++-=-+.+.+..|-.|.+++|-.|.- ....++...+.+..|
T Consensus 159 ~HPtQaLaDl~Ti~E~~G~l~glkva~v--GD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g 236 (365)
T 4amu_A 159 EHPTQIIADFMTMKEKFGNLKNKKIVFI--GDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG 236 (365)
T ss_dssp CCHHHHHHHHHHHHHHHSSCTTCEEEEE--SSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEEEE--CCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC
Confidence 4799998855 332 333 5544 77764433222223456799999999988765 233345666777788
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECC
Q 005155 72 LSVGLIQRGMIPEERRSNYRCDITYTNN 99 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (711)
.++-+. . +++ ...-+|||+|.+.
T Consensus 237 ~~i~~~-~--d~~--eav~~aDVVytd~ 259 (365)
T 4amu_A 237 GSLRFS-T--DKI--LAAQDADVIYTDV 259 (365)
T ss_dssp CEEEEE-S--CHH--HHTTTCSEEEECC
T ss_pred CEEEEE-C--CHH--HHhcCCCEEEecc
Confidence 776542 2 232 2457899999863
No 300
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=21.16 E-value=1.4e+02 Score=31.12 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=50.4
Q ss_pred CCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEEeCCCcch---HhH-HHHHHh
Q 005155 327 LPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYA---ARE-AETVAQ 399 (711)
Q Consensus 327 ~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~---~~E-a~Iia~ 399 (711)
..|.|+........+ +.+..+.+.|.+||+ ++.|.++++.+.+..++.|+...+-.-. .++ -+. .+++ +
T Consensus 88 ~vD~V~I~tp~~~H~--~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~-R~~~p~~~~~k~~i-~ 163 (361)
T 3u3x_A 88 NIGLIVSAAVSSERA--ELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSE-HFESPATVKAGELV-A 163 (361)
T ss_dssp TCCEEEECCCHHHHH--HHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHH-HHTCHHHHHHHHHH-H
T ss_pred CCCEEEEeCChHHHH--HHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechH-hhCCHHHHHHHHHH-H
Confidence 356665544443332 334445578999999 5889999999999999999987664321 111 122 2333 6
Q ss_pred cCCCccEEEEc
Q 005155 400 AGRKYAITIST 410 (711)
Q Consensus 400 AG~~G~VTIAT 410 (711)
+|.-|.|.-.+
T Consensus 164 ~g~iG~i~~~~ 174 (361)
T 3u3x_A 164 AGAIGEVVHIV 174 (361)
T ss_dssp TTTTSSEEEEE
T ss_pred cCCCCCeEEEE
Confidence 78888876554
No 301
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=21.15 E-value=65 Score=37.45 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=35.1
Q ss_pred CchhHHHHHHHHhC---CC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHH
Q 005155 3 HFDVQIIGGAVLHD---GS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (711)
Q Consensus 3 p~dvQl~g~~~L~~---G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~ 57 (711)
+++-|.-+.-.+.+ |. +....=|-|||.++.+.+. .+.+. +.|..||..=++
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a--~~~~~-~~vtAP~~~a~~ 231 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS--RIAGR-AIVTAPAKASTD 231 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH--HSSSC-EEEECSSCCSCH
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH--HHHhC-cEEECCCHHHHH
Confidence 34567777666653 33 7888899999976666664 55554 777788776444
No 302
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=21.15 E-value=3.8e+02 Score=27.31 Aligned_cols=106 Identities=11% Similarity=0.001 Sum_probs=61.7
Q ss_pred cHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHH---H
Q 005155 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDL---L 373 (711)
Q Consensus 300 te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~---L 373 (711)
..++++.+.|+...+ -............|.|+......+.+ +.+..+.+.|.+||+ ++.|.++++.|.+. -
T Consensus 49 ~~a~~~a~~~g~~~~-~~d~~~ll~~~~iDaV~I~tP~~~H~--~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~ 125 (390)
T 4h3v_A 49 EAVRAAAGKLGWSTT-ETDWRTLLERDDVQLVDVCTPGDSHA--EIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKA 125 (390)
T ss_dssp HHHHHHHHHHTCSEE-ESCHHHHTTCTTCSEEEECSCGGGHH--HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcc-cCCHHHHhcCCCCCEEEEeCChHHHH--HHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHH
Confidence 345677788876522 12222333334567776654444442 233444568999998 78899999999555 5
Q ss_pred HHCCCCeEEEeCCCcch--HhH-HHHHHhcCCCccEEEEc
Q 005155 374 KQQGIPHNVLNARPKYA--ARE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 374 ~~~gi~~~vLnA~~~~~--~~E-a~Iia~AG~~G~VTIAT 410 (711)
++.|+...+-.-. .++ -+. .++| +.|.-|.|.-..
T Consensus 126 ~~~g~~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~v~ 163 (390)
T 4h3v_A 126 AAGGIRSMVGFTY-RRVPAIALARKLV-ADGKIGTVRHVR 163 (390)
T ss_dssp HHTTCCEEEECGG-GGSHHHHHHHHHH-HTTSSCSEEEEE
T ss_pred HhcCCceEEEeee-ccCchHHHHHHHH-HcCCCCcceeeE
Confidence 5588887764321 111 122 2233 678888886543
No 303
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=21.02 E-value=86 Score=28.45 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=30.9
Q ss_pred hcCCcEEEEecch--hhHHHHHHHHHHCCCCeEEEeCC
Q 005155 351 RLGRPVLVGSTSV--ENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 351 ~~grPVLV~t~Si--~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.+.+||+|.|.+- ..|...+..|+..|+...+|.++
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG 107 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGG 107 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCc
Confidence 4678999999998 68999999999999977777774
No 304
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.02 E-value=3.1e+02 Score=23.64 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=36.8
Q ss_pred cCCcEEEEec------chhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 352 LGRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 352 ~grPVLV~t~------Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
+..||.||+. +.--|...-+.|.+.|++...++-.. ..+...++....|.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPT 71 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCS
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCC
Confidence 4569999995 67778999999999999999888642 2222334555566543
No 305
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=20.70 E-value=2.1e+02 Score=26.46 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH-------h---ccC-----------CCeEEECCCchhhHHHHHhhh
Q 005155 56 AQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR-------S---NYR-----------CDITYTNNSELGFDYLRDNLA 112 (711)
Q Consensus 56 A~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~-------~---aY~-----------~DI~YgT~~elgfDyLrD~l~ 112 (711)
+..|++.|..+|+.||.+|-+.. +.+.++ +. . .|. -+.+|||.+.+..+-|...+.
T Consensus 39 t~~D~~~L~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~~l~~i~~~F~ 116 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRNKN-DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFR 116 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEETTEEEETTEEEEHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCCEEEEee-CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCCCCEEEEeCCcEeHHHHHHHhc
Confidence 88999999999999999987543 444322 11 1 121 257777777666666666554
No 306
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=20.53 E-value=1.7e+02 Score=35.81 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhc---------------C---CcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 339 WEYARQEVESMFRL---------------G---RPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 339 ~~aIi~ei~~~~~~---------------g---rPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
...|+++|.+.... | +-|-|.+++-..+..+.+.|.+.|||+..+.
T Consensus 519 a~~iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~~gIP~~~~~ 582 (1180)
T 1w36_B 519 AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 (1180)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHTTTCCEEETT
T ss_pred HHHHHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHHCCCCEEEcc
Confidence 34577777776542 1 2389999999999999999999999997665
No 307
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=20.50 E-value=2.1e+02 Score=31.33 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCC
Q 005155 630 AIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGAN 679 (711)
Q Consensus 630 ~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~ 679 (711)
.--..|...|......+-+..+.+++...--+.+++-+|..|+.|++|..
T Consensus 94 ~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ 143 (417)
T 2ayu_A 94 EKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQE 143 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33456888999988888888899999899999999999999999998754
No 308
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=20.43 E-value=2.4e+02 Score=32.73 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC----CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEc
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~----gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIAT 410 (711)
+.++||.+++.+-++...+.+++. |+++.+++++.....+...+.. ...|.|+|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~T 353 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVT 353 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEc
Confidence 788999999999988887777664 8999999986322222222222 35799998
No 309
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=20.34 E-value=2.5e+02 Score=28.66 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH--------H---hccCC-----------CeEEECCCchhhHHHHHhhhc
Q 005155 56 AQRDAEWMERVHRFLGLSVGLIQRGMIPEER--------R---SNYRC-----------DITYTNNSELGFDYLRDNLAA 113 (711)
Q Consensus 56 A~RDae~~~~~y~~LGLtv~~i~~~~~~~~r--------~---~aY~~-----------DI~YgT~~elgfDyLrD~l~~ 113 (711)
+..|++.|..+|+.||.+|-+. .+.+.++- + ..+.| +.+||+.+.+..|-|.+.|..
T Consensus 44 t~~D~~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~~~h~~~d~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~ 122 (278)
T 3od5_A 44 TCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKG 122 (278)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHHSCCTTBSCEEEEEESCEETTEEECSSSEEEHHHHHHTTST
T ss_pred CHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHhhcccCCCEEEEEEECCCCCCEEEEeCCeEEHHHHHHHhcc
Confidence 6799999999999999998754 34443221 1 11222 567888888877777776653
No 310
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=20.32 E-value=2.3e+02 Score=29.87 Aligned_cols=105 Identities=8% Similarity=-0.047 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 005155 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (711)
Q Consensus 301 e~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV---~t~Si~~SE~Ls~~L~~~g 377 (711)
.++++.+.|+..-+ ..+..........|.|+......+.+ +.+..+.+.|.+||+ ++.|.++++.|.+.-++.|
T Consensus 71 ~a~~~a~~~~~~~~-y~d~~~ll~~~~vD~V~I~tp~~~H~--~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 147 (412)
T 4gqa_A 71 MAERHAAKLGAEKA-YGDWRELVNDPQVDVVDITSPNHLHY--TMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAG 147 (412)
T ss_dssp HHHHHHHHHTCSEE-ESSHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeE-ECCHHHHhcCCCCCEEEECCCcHHHH--HHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhC
Confidence 34667777776421 22323333333456666544433332 233344568999998 5779999999999999999
Q ss_pred CCeEEEeCCCcch--HhH-HHHHHhcCCCccEEEEc
Q 005155 378 IPHNVLNARPKYA--ARE-AETVAQAGRKYAITIST 410 (711)
Q Consensus 378 i~~~vLnA~~~~~--~~E-a~Iia~AG~~G~VTIAT 410 (711)
..+.+-.-. .++ -+. .++| +.|.-|.|.-..
T Consensus 148 ~~~~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~~~ 181 (412)
T 4gqa_A 148 VKTMVAFNN-IKTPAALLAKQII-ARGDIGEPVRFR 181 (412)
T ss_dssp CCEEEECGG-GTSHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred Ceeeeccce-ecCHHHHHHHHHH-hcCCcCCeEEEE
Confidence 988764321 111 122 2333 568888876543
No 311
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=20.22 E-value=76 Score=32.74 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 005155 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (711)
Q Consensus 33 ~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (711)
.+..++....+.++.|++++..-+. ++...+...|+.+..+.+++++++|.... ..+|+++|+
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVD----WLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHH----HHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 3344445667789999999986555 44455556799999999999988877653 347888886
Done!